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Santiwarodom W, Apilardmongkol P, Kuamit T, Parasuk V. Theoretical study of electrochemical reduction of CO 2 to CO using a nickel-N 4-Schiff base complex. Phys Chem Chem Phys 2024; 26:24068-24077. [PMID: 39248005 DOI: 10.1039/d4cp02521k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/10/2024]
Abstract
The electrochemical reduction (ECR) of CO2 to CO by nickel-N4-Schiff base complexes as catalysts was investigated using density functional theory (DFT). Three nickel complexes, 1-Ni, 2-Ni, and [2-Ni]Me were considered. Two CO2 reduction pathways, i.e., external and internal proton transfer, were proposed and their reaction energy profiles were computed. The external proton transfer pathway which includes three steps has no transition state. The reaction energies for all steps are exothermic and the reaction catalyzed by 1-Ni has the lowest overall reaction energy (-5.72 eV) followed by those by 2-Ni (-5.56 eV) and [2-Ni]Me (-5.54 eV). The internal proton transfer pathway is composed of four steps. The internal proton transfer step (carboxylic formation) includes a transition state. The CO2 reduction by [2-Ni]Me could not proceed via this mechanism, since [2-Ni]Me does not have an NH group in the ligand and 1-Ni has a lower activation energy (0.83 eV), which is in agreement with the experiment. The charge of the pre-adsorption nickel complex seems to be related to the activity of the catalysts. The catalyst with a less positive nickel charge is more active.
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Affiliation(s)
- Wilasinee Santiwarodom
- Center of Excellence in Computational Chemistry (CECC), Department of Chemistry, Faculty of Science, Chulalongkorn University, Pathumwan, Bangkok 10330, Thailand.
| | - Pavee Apilardmongkol
- Center of Excellence in Computational Chemistry (CECC), Department of Chemistry, Faculty of Science, Chulalongkorn University, Pathumwan, Bangkok 10330, Thailand.
| | - Thanawit Kuamit
- Center of Excellence in Computational Chemistry (CECC), Department of Chemistry, Faculty of Science, Chulalongkorn University, Pathumwan, Bangkok 10330, Thailand.
| | - Vudhichai Parasuk
- Center of Excellence in Computational Chemistry (CECC), Department of Chemistry, Faculty of Science, Chulalongkorn University, Pathumwan, Bangkok 10330, Thailand.
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2
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Kim KH, Seo SE, Park CS, Kim S, Lee S, Ryu C, Yong D, Park YM, Kwon OS. Open-Bandgap Graphene-Based Field-Effect Transistor Using Oligo(phenylene-ethynylene) Interfacial Chemistry. Angew Chem Int Ed Engl 2022; 61:e202209726. [PMID: 35969510 PMCID: PMC9826410 DOI: 10.1002/anie.202209726] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Indexed: 01/11/2023]
Abstract
Organic interfacial compounds (OICs) are required as linkers for the highly stable and efficient immobilization of bioprobes in nanobiosensors using 2D nanomaterials such as graphene. Herein, we first demonstrated the fabrication of a field-effect transistor (FET) via a microelectromechanical system process after covalent functionalization on large-scale graphene by introducing oligo(phenylene-ethynylene)amine (OPE). OPE was compared to various OICs by density functional theory simulations and was confirmed to have a higher binding energy with graphene and a lower band gap than other OICs. OPE can improve the immobilization efficiency of a bioprobe by forming a self-assembly monolayer via anion-based reaction. Using this technology, Magainin I-conjugated OGMFET (MOGMFET) showed a high sensitivity, high selectivity, with a limit of detection of 100 cfu mL-1 . These results indicate that the OPE OIC can be applied for stable and comfortable interfacing technology for biosensor fabrication.
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Affiliation(s)
- Kyung Ho Kim
- Infectious Disease Research CenterKorea Research Institute of Bioscience and Biotechnology (KRIBB)Daejeon34141Republic of Korea
| | - Sung Eun Seo
- Infectious Disease Research CenterKorea Research Institute of Bioscience and Biotechnology (KRIBB)Daejeon34141Republic of Korea
| | - Chul Soon Park
- Infectious Disease Research CenterKorea Research Institute of Bioscience and Biotechnology (KRIBB)Daejeon34141Republic of Korea
| | - Soomin Kim
- Infectious Disease Research CenterKorea Research Institute of Bioscience and Biotechnology (KRIBB)Daejeon34141Republic of Korea
| | - Soohyun Lee
- Infectious Disease Research CenterKorea Research Institute of Bioscience and Biotechnology (KRIBB)Daejeon34141Republic of Korea
| | - Choong‐Min Ryu
- Infectious Disease Research CenterKorea Research Institute of Bioscience and Biotechnology (KRIBB)Daejeon34141Republic of Korea
| | - Dongeun Yong
- Department of Laboratory Medicine and Research Institute of Bacterial ResistanceYonsei University College of MedicineSeoulRepublic of Korea
| | - Yoo Min Park
- Division of Nano-Bio Sensors/Chips DevelopmentNational NanoFab Center (NNFC)DaejeonRepublic of Korea
| | - Oh Seok Kwon
- Infectious Disease Research CenterKorea Research Institute of Bioscience and Biotechnology (KRIBB)Daejeon34141Republic of Korea
- College of Biotechnology and BioengineeringSungkyunkwan UniversitySuwon16419Republic of Korea
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3
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Kim KH, Seo SE, Park CS, Kim S, Lee S, Ryu CM, Yong D, Park YM, Kwon OS. Open‐Bandgap Graphene‐based Field‐Effect Transistor Using Oligo(phenylene‐ethynylene) Interfacial Chemistry. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202209726] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Kyung Ho Kim
- KRIBB: Korea Research Institute of Bioscience and Biotechnology Infectious Disease Research Center KOREA, REPUBLIC OF
| | - Sung Eun Seo
- KRIBB: Korea Research Institute of Bioscience and Biotechnology Infectious Disease Research Center KOREA, REPUBLIC OF
| | - Chul Soon Park
- KRIBB: Korea Research Institute of Bioscience and Biotechnology Infectious Disease Research Center KOREA, REPUBLIC OF
| | - Soomin Kim
- KRIBB: Korea Research Institute of Bioscience and Biotechnology Infectious Disease Research Center KOREA, REPUBLIC OF
| | - Soohyun Lee
- KRIBB: Korea Research Institute of Bioscience and Biotechnology Infectious Disease Research Center KOREA, REPUBLIC OF
| | - Choong-Min Ryu
- KRIBB: Korea Research Institute of Bioscience and Biotechnology Infectious Disease Research Center KOREA, REPUBLIC OF
| | - Dongeun Yong
- Yonsei University College of Medicine Department of Laboratory Medicine and Research Institute of Bacterial Resistanc KOREA, REPUBLIC OF
| | - Yoo Min Park
- National NanoFab Center Division of Nano-Bio Sensors/Chips Development KOREA, REPUBLIC OF
| | - Oh Seok Kwon
- Korea Research Institute of Bioscience and Biotechnology Infectious Disease Research Center 125 Gwahak-ro, Yuseong-gu 34141 Daejeon KOREA, REPUBLIC OF
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4
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Hua H, Ni Y. The adsorption behaviors of N 2O on penta-graphene and Ni-doped penta-graphene. RSC Adv 2022; 12:23937-23945. [PMID: 36093239 PMCID: PMC9400166 DOI: 10.1039/d2ra03424g] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2022] [Accepted: 08/09/2022] [Indexed: 01/21/2023] Open
Abstract
In order to develop the adsorption application of penta-graphene (PG) to N2O gas molecule, we calculated the sensing properties of PG and Ni-doped PG to N2O molecule via first-principles calculations. Based on the calculated adsorption energy, charge transfer, band gap, density of states and partial density of states, we observed that this gas molecule was weakly physically adsorbed on the surface of intrinsic PG, while the adsorption behaviors on the surface of Ni-doped PG were greatly influenced by the doping sites and adsorption orientations. With the Ni atom doped at the sp2 hybridized carbon site, strong chemical adsorption between the gas molecule and the substrate was induced. The adsorption structure of the N2O molecule with its N atom close to the substrate exhibited better stability. Moreover, an external perpendicular electric field could enhance the adsorption performance of the N2O molecule and adjust the charge transfer between the molecule and substrate. Our results broaden the adsorption applications of PG and indicate that Ni-doped PG is a potential candidate for N2O gas sensors. N2O molecule is chemically adsorbed on the surface of Ni-doped penta-graphene only when the Ni atom is doped at the sp2 hybridized carbon site. External perpendicular electric field can enhance the adsorption performance.![]()
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Affiliation(s)
- Hu Hua
- Hubei Engineering Technology Research Center of Energy Photoelectric Device and System, Hubei University of Technology, Wuhan, 430068, China
- College of Science, Hubei University of Technology, Wuhan, 430068, China
| | - Yun Ni
- Hubei Engineering Technology Research Center of Energy Photoelectric Device and System, Hubei University of Technology, Wuhan, 430068, China
- College of Science, Hubei University of Technology, Wuhan, 430068, China
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Mousavian P, Esrafili MD, Sardroodi JJ. Activation of the methane C–H bond by Al- and Ga-doped graphenes: a DFT investigation. NEW J CHEM 2021. [DOI: 10.1039/d1nj03456a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The potential of Al- and Ge-embedded graphene to activate the C–H bond of CH4 in the presence of a N2O molecule was studied using DFT calculations.
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Affiliation(s)
| | - Mehdi D. Esrafili
- Department of Chemistry, Faculty of Basic Sciences, University of Maragheh, P.O. Box 55136-553, Maragheh, Iran
| | - Jaber J. Sardroodi
- Department of Chemistry, Azarbaijan Shahid Madani University, Tabriz, Iran
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Jiao A, Jiang X, Liu J, Ma Y, Zhang H. Density Functional Theory Investigation on the Catalytic Reduction of NO by CO on the Char Surface: the Effect of Iron. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2020; 54:2422-2428. [PMID: 31951386 DOI: 10.1021/acs.est.9b07081] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
The catalytic reduction of NO in the presence of CO was investigated by density functional theory calculations with consideration of the iron involved in char (Fe-adsorbed char). The quantitative information of reaction kinetics was also evaluated using canonical variational transition-state theory in the temperature range of 500-1800 K. The analysis of the associated adsorption energies indicates that the affinity of the carbon active site toward NO and CO is stronger than that at the Fe site, and the NO adsorption on the carbon site in the N-down mode is the most energetically favorable. Following the chemisorption step, the reactions proceed for N2O, N2, and CO2 desorption by different reduction mechanisms, depending on whether CO exists. The FeO group formed and transformed during the NO reduction is of significant importance for the whole catalytic process. The results show that the heterogeneous reduction of NO is promoted much more dramatically with the help of CO, which brings about a decrease in the activation energies accompanied by an increase in the reaction rate constants. The effectiveness of the Fe-adsorbed model derives from its prominent effect on NO-CO reaction and becomes more realistic than the original metal-free structure.
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Affiliation(s)
- Anyao Jiao
- School of Mechanical Engineering , Shanghai Jiao Tong University , Minhang District, Shanghai 200240 , China
| | - Xiumin Jiang
- School of Mechanical Engineering , Shanghai Jiao Tong University , Minhang District, Shanghai 200240 , China
| | - Jiaxun Liu
- School of Mechanical Engineering , Shanghai Jiao Tong University , Minhang District, Shanghai 200240 , China
| | - Yang Ma
- School of Mechanical Engineering , Shanghai Jiao Tong University , Minhang District, Shanghai 200240 , China
| | - Hai Zhang
- School of Mechanical Engineering , Shanghai Jiao Tong University , Minhang District, Shanghai 200240 , China
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Cortes-Arriagada D, Mella A. Performance of doped graphene nanoadsorbents with first-row transition metals (Sc Zn) for the adsorption of water-soluble trivalent arsenicals: A DFT study. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.111665] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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8
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Riyaz M, Goel N. Single‐Atom Catalysis Using Chromium Embedded in Divacant Graphene for Conversion of Dinitrogen to Ammonia. Chemphyschem 2019; 20:1954-1959. [DOI: 10.1002/cphc.201900519] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2019] [Revised: 05/31/2019] [Indexed: 11/12/2022]
Affiliation(s)
- Mohd Riyaz
- Theoretical & Computational Chemistry group Department of Chemistry & Centre for Advanced studies in ChemistryPanjab University Chandigarh- 160014 India
| | - Neetu Goel
- Theoretical & Computational Chemistry group Department of Chemistry & Centre for Advanced studies in ChemistryPanjab University Chandigarh- 160014 India
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Hamadi H, Shakerzadeh E, Esrafili MD. A DFT study on the potential application of Si@C24N24 porous fullerene as an innovative and highly active catalyst for NO reduction. Chem Phys Lett 2019. [DOI: 10.1016/j.cplett.2019.03.057] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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10
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Esrafili MD, Asadollahi S, Heydari S. A DFT study on NO reduction to N 2O using Al- and P-doped hexagonal boron nitride nanosheets. J Mol Graph Model 2019; 89:41-49. [PMID: 30870648 DOI: 10.1016/j.jmgm.2019.02.013] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2018] [Revised: 02/24/2019] [Accepted: 02/25/2019] [Indexed: 10/27/2022]
Abstract
Using the dispersion-corrected DFT calculations, the catalytic reduction of NO molecules to N2O is investigated over Al- and P-doped hexagonal boron nitride nanosheets (h-BNNS). It is found that NO dissociation over both these surfaces needs a very large energy barrier, which indicates it cannot proceed at normal temperature. In contrast, the results show that NO molecules can be easily reduced into N2O via a dimer mechanism. The obtained activation energies reveal that the catalytic activity of Al-doped h-BNNS is better than that of P-doped one, mainly due to the moderate coadsorption energies of NO molecules over this surface.
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Affiliation(s)
- Mehdi D Esrafili
- Laboratory of Theoretical Chemistry, Department of Chemistry, University of Maragheh, Maragheh, Iran.
| | - Soheila Asadollahi
- Laboratory of Theoretical Chemistry, Department of Chemistry, University of Maragheh, Maragheh, Iran
| | - Safa Heydari
- Laboratory of Theoretical Chemistry, Department of Chemistry, University of Maragheh, Maragheh, Iran
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11
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Xiang C, Li A, Yang S, Lan Z, Xie W, Tang Y, Xu H, Wang Z, Gu H. Enhanced hydrogen storage performance of graphene nanoflakes doped with Cr atoms: a DFT study. RSC Adv 2019; 9:25690-25696. [PMID: 35530093 PMCID: PMC9070027 DOI: 10.1039/c9ra04589a] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2019] [Accepted: 08/12/2019] [Indexed: 01/19/2023] Open
Abstract
The hydrogen storage performances of novel graphene nanoflakes doped with Cr atoms were systematically investigated using first-principles density functional theory. The calculated results showed that one Cr atom could be successfully doped into the graphene nanoflake with a binding energy of −4.402 eV. Different from the H2 molecule moving away from the pristine graphene nanoflake surface, the built Cr-doped graphene nanoflake exhibited a high affinity to the H2 molecule with a chemical adsorption energy of −0.574 eV. Moreover, the adsorptions of two to five H2 molecules on the Cr-doped graphene nanoflake were studied as well. It was found that there were a maximum of three H2 molecules stored on the graphene nanoflake doped with one Cr atom. Also, the further calculations showed that the numbers of the stored H2 molecules were effectively improved to be six (or nine) when the graphene nanoflakes were doped with two (or three) Cr atoms. This research reveals that the graphene nanoflake doped with Cr atom could be a promising material to store H2 molecules and its H2 storage performance could be effectively enhanced through modifying the number of doped Cr atoms. Our study reveals that the H2 storage performance of a graphene nanoflake based material could be significantly enhanced through doping with Cr atoms.![]()
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Affiliation(s)
- Chunqi Xiang
- School of Physics and Electronic Information
- Hubei Key Laboratory for Processing and Application of Catalytic Materials
- Huanggang Normal University
- Huanggang 438000
- P. R. China
| | - Ao Li
- School of Physics and Electronic Information
- Hubei Key Laboratory for Processing and Application of Catalytic Materials
- Huanggang Normal University
- Huanggang 438000
- P. R. China
| | - Shulin Yang
- School of Physics and Electronic Information
- Hubei Key Laboratory for Processing and Application of Catalytic Materials
- Huanggang Normal University
- Huanggang 438000
- P. R. China
| | - Zhigao Lan
- School of Physics and Electronic Information
- Hubei Key Laboratory for Processing and Application of Catalytic Materials
- Huanggang Normal University
- Huanggang 438000
- P. R. China
| | - Wei Xie
- School of Physics and Electronic Information
- Hubei Key Laboratory for Processing and Application of Catalytic Materials
- Huanggang Normal University
- Huanggang 438000
- P. R. China
| | - Yiming Tang
- School of Physics and Electronic Information
- Hubei Key Laboratory for Processing and Application of Catalytic Materials
- Huanggang Normal University
- Huanggang 438000
- P. R. China
| | - Huoxi Xu
- School of Physics and Electronic Information
- Hubei Key Laboratory for Processing and Application of Catalytic Materials
- Huanggang Normal University
- Huanggang 438000
- P. R. China
| | - Zhao Wang
- Faculty of Physics and Electronic Sciences
- Hubei University
- Wuhan 430062
- P. R. China
| | - Haoshuang Gu
- School of Physics and Electronic Information
- Hubei Key Laboratory for Processing and Application of Catalytic Materials
- Huanggang Normal University
- Huanggang 438000
- P. R. China
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Periodic and non-periodic DFT modeling of CO reduction on the surface of Ni-doped graphene nanosheet. MOLECULAR CATALYSIS 2018. [DOI: 10.1016/j.mcat.2018.06.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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13
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Esrafili MD. NO reduction by CO molecule over Si-doped boron nitride nanosheet: A dispersion-corrected DFT study. Chem Phys Lett 2018. [DOI: 10.1016/j.cplett.2018.02.020] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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14
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Metal‐Free Reduction of NO over a Fullerene‐like Boron Nitride Nanocluster: A Mechanistic Study by DFT Calculations. ChemistrySelect 2018. [DOI: 10.1002/slct.201702812] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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15
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Jayaprakash GK, Flores-Moreno R. Regioselectivity in hexagonal boron nitride co-doped graphene. NEW J CHEM 2018. [DOI: 10.1039/c8nj03679a] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The active electron transfer (ET) sites on the graphene surface can be controlled by hexagonal boron nitride (h-BN) doping.
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Affiliation(s)
| | - Roberto Flores-Moreno
- Departamento de Química
- Centro Universitario de Ciencias Exactas e Ingenierías
- Universidad Guadalajara
- Mexico
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