1
|
Kapil K, Xu S, Lee I, Murata H, Kwon SJ, Dordick JS, Matyjaszewski K. Highly Sensitive Detection of Bacteria by Binder-Coupled Multifunctional Polymeric Dyes. Polymers (Basel) 2023; 15:2723. [PMID: 37376368 DOI: 10.3390/polym15122723] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Revised: 06/15/2023] [Accepted: 06/16/2023] [Indexed: 06/29/2023] Open
Abstract
Infectious diseases caused by pathogens are a health burden, but traditional pathogen identification methods are complex and time-consuming. In this work, we have developed well-defined, multifunctional copolymers with rhodamine B dye synthesized by atom transfer radical polymerization (ATRP) using fully oxygen-tolerant photoredox/copper dual catalysis. ATRP enabled the efficient synthesis of copolymers with multiple fluorescent dyes from a biotin-functionalized initiator. Biotinylated dye copolymers were conjugated to antibody (Ab) or cell-wall binding domain (CBD), resulting in a highly fluorescent polymeric dye-binder complex. We showed that the unique combination of multifunctional polymeric dyes and strain-specific Ab or CBD exhibited both enhanced fluorescence and target selectivity for bioimaging of Staphylococcus aureus by flow cytometry and confocal microscopy. The ATRP-derived polymeric dyes have the potential as biosensors for the detection of target DNA, protein, or bacteria, as well as bioimaging.
Collapse
Affiliation(s)
- Kriti Kapil
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA
| | - Shirley Xu
- Department of Chemical and Biological Engineering, Center for Biotechnology & Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, NY 12180, USA
| | - Inseon Lee
- Department of Chemical and Biological Engineering, Center for Biotechnology & Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, NY 12180, USA
| | - Hironobu Murata
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA
| | - Seok-Joon Kwon
- Department of Chemical and Biological Engineering, Center for Biotechnology & Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, NY 12180, USA
| | - Jonathan S Dordick
- Department of Chemical and Biological Engineering, Center for Biotechnology & Interdisciplinary Studies, Rensselaer Polytechnic Institute, Troy, NY 12180, USA
| | - Krzysztof Matyjaszewski
- Department of Chemistry, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA 15213, USA
| |
Collapse
|
2
|
Research Progress on Up-Conversion Fluorescence Probe for Detection of Perfluorooctanoic Acid in Water Treatment. Polymers (Basel) 2023; 15:polym15030605. [PMID: 36771906 PMCID: PMC9920290 DOI: 10.3390/polym15030605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 01/07/2023] [Accepted: 01/16/2023] [Indexed: 01/27/2023] Open
Abstract
Perfluorooctanoic acid (PFOA) is a new type of organic pollutant in wastewater that is persistent, toxic, and accumulates in living organisms. The development of rapid and sensitive analytical methods to detect PFOA in environmental media is of great importance. Fluorescence detection has the advantages of high efficiency and low cost, in which fluorescent probes have excellent fluorescence properties, excellent bio-solubility, and remarkable photostability. It is necessary to review the fluorescence detection routes for PFOA. In addition, the up-conversion of fluorescent materials (UCNPs), as fluorescent materials to prepare fluorescent probes with, has significant advantages and also attracts the attention of researchers, however, reviews related to their application in detecting PFOA and comparing them with other routes are rare. Furthermore, there are many strategies to improve the performance of up-conversion fluorescent probes including SiO2 modification and amino modification. These strategies can enhance the detection effect of PFOA. Thus, this work reviews the types of fluorescence detection, the design, and synthesis of UCNPs, their recognition mechanism, properties, and their application progress. Moreover, the development trend and prospects of these detection probes are given.
Collapse
|
3
|
Seo JY, Choi MH, Lee BW, Lee JH, Shin S, Cho S, Cho KY, Baek KY. Feasible Detoxification Coating Material for Chemical Warfare Agents Using Poly(methyl methacrylate)-Branched Poly(ethyleneimine) Copolymer and Metal-Organic Framework Composites. ACS APPLIED MATERIALS & INTERFACES 2022; 14:50246-50255. [PMID: 36288400 DOI: 10.1021/acsami.2c15961] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Defense against chemical warfare agents (CWAs) is regarded as a top priority for the protection of humanity, but it still depends on physical protection with severe limitations such as residual toxicity and post-treatment requirement. In this study, a strategically designed functional polymeric substrate was composited with a metal-organic framework catalyst to remove toxicity immediately. A series of PMMA-BPEI copolymers exhibited high processability as a coating and accelerated the catalytic activity of Zr(IV)-based metal-organic framework catalysts (UiO-66). Among them, PMB12_40 composite coating on a cotton fabric, containing a PMMA-BPEI copolymer (PMMA/BPEI = 1/2) and 40% of UiO-66 catalyst, can efficiently decompose nerve agent simulants (methyl-paraoxon) under both liquid phase (t1/2 = 0.14 h) and humidified (t1/2 = 4.8 h) conditions. Moreover, a real agent, GD, was decomposed 100% by PMB12_40 in 4 h at 25 °C and 65% relative humidity. On the basis of superior catalytic activity, the PMB composites are anticipated to be a potential material for active chemical protection coating.
Collapse
Affiliation(s)
- Jin Young Seo
- Center for Materials Architecturing, Korea Institute of Science and Technology, Seoul 02792, Republic of Korea
- Department of Chemical and Biological Engineering, Korea University, Seoul 02481, Republic of Korea
| | - Min Hyuk Choi
- Center for Materials Architecturing, Korea Institute of Science and Technology, Seoul 02792, Republic of Korea
| | - Bo Woo Lee
- Center for Materials Architecturing, Korea Institute of Science and Technology, Seoul 02792, Republic of Korea
- Department of Chemical and Biological Engineering, Korea University, Seoul 02481, Republic of Korea
| | - Jung-Hyun Lee
- Department of Chemical and Biological Engineering, Korea University, Seoul 02481, Republic of Korea
| | - Seunghan Shin
- Green Chemistry and Materials Group, Korea Institute of Industrial Technology, Cheonan 31056, Republic of Korea
| | - Sangho Cho
- Center for Materials Architecturing, Korea Institute of Science and Technology, Seoul 02792, Republic of Korea
- Division of Nano & Information Technology, KIST School, Korea University of Science and Technology, Seoul 02792, Republic of Korea
| | - Kie Yong Cho
- Department of Industrial Chemistry, Pukyong National University, 45 Yongso-Ro, Nam-Gu, Busan 48513, Republic of Korea
| | - Kyung-Youl Baek
- Center for Materials Architecturing, Korea Institute of Science and Technology, Seoul 02792, Republic of Korea
- Division of Nano & Information Technology, KIST School, Korea University of Science and Technology, Seoul 02792, Republic of Korea
- KHU-KIST Department of Converging Science and Technology, Kyung Hee University, Seoul 02447, Republic of Korea
| |
Collapse
|
4
|
Fabre L, Rousset C, Monier K, Da Cruz-Boisson F, Bouvet P, Charreyre MT, Delair T, Fleury E, Favier A. Fluorescent Polymer-AS1411-Aptamer Probe for dSTORM Super-Resolution Imaging of Endogenous Nucleolin. Biomacromolecules 2022; 23:2302-2314. [PMID: 35549176 DOI: 10.1021/acs.biomac.1c01706] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Nucleolin is a multifunctional protein involved in essential biological processes. To precisely localize it and unravel its different roles in cells, fluorescence imaging is a powerful tool, especially super-resolution techniques. Here, we developed polymer-aptamer probes, both small and bright, adapted to direct stochastic optical reconstruction microscopy (dSTORM). Well-defined fluorescent polymer chains bearing fluorophores (AlexaFluor647) and a reactive end group were prepared via RAFT polymerization. The reactive end-group was then used for the oriented conjugation with AS1411, a DNA aptamer that recognizes nucleolin with high affinity. Conjugation via strain-promoted alkyne/azide click chemistry (SPAAC) between dibenzylcyclooctyne-ended fluorescent polymer chains and 3'-azido-functionalized nucleic acids proved to be the most efficient approach. In vitro and in cellulo evaluations demonstrated that selective recognition for nucleolin was retained. Their brightness and small size make these polymer-aptamer probes an appealing alternative to immunofluorescence, especially for super-resolution (10-20 nm) nanoscopy. dSTORM imaging demonstrated the ability of our fluorescent polymer-aptamer probe to provide selective and super-resolved detection of cell surface nucleolin.
Collapse
Affiliation(s)
- Laura Fabre
- Univ Lyon, CNRS, UMR 5223, Ingénierie des Matériaux Polymères, Université Claude Bernard Lyon 1, INSA Lyon, F-69622 Villeurbanne Cédex, France
| | - Corentin Rousset
- Univ Lyon, Centre Léon Bérard, UMR INSERM 1052 CNRS 5286, Centre de recherche en cancérologie de Lyon, Lyon F-69008, France
| | - Karine Monier
- Univ Lyon, Centre Léon Bérard, UMR INSERM 1052 CNRS 5286, Centre de recherche en cancérologie de Lyon, Lyon F-69008, France
| | - Fernande Da Cruz-Boisson
- Univ Lyon, CNRS, UMR 5223, Ingénierie des Matériaux Polymères, Université Claude Bernard Lyon 1, INSA Lyon, F-69622 Villeurbanne Cédex, France
| | - Philippe Bouvet
- Univ Lyon, Centre Léon Bérard, UMR INSERM 1052 CNRS 5286, Centre de recherche en cancérologie de Lyon, Lyon F-69008, France
| | - Marie-Thérèse Charreyre
- Univ Lyon, CNRS, UMR 5223, Ingénierie des Matériaux Polymères, Université Claude Bernard Lyon 1, INSA Lyon, F-69622 Villeurbanne Cédex, France
| | - Thierry Delair
- Univ Lyon, CNRS, UMR 5223, Ingénierie des Matériaux Polymères, Université Claude Bernard Lyon 1, INSA Lyon, F-69622 Villeurbanne Cédex, France
| | - Etienne Fleury
- Univ Lyon, CNRS, UMR 5223, Ingénierie des Matériaux Polymères, Université Claude Bernard Lyon 1, INSA Lyon, F-69622 Villeurbanne Cédex, France
| | - Arnaud Favier
- Univ Lyon, CNRS, UMR 5223, Ingénierie des Matériaux Polymères, Université Claude Bernard Lyon 1, INSA Lyon, F-69622 Villeurbanne Cédex, France
| |
Collapse
|
5
|
Zhou D, Zhu LW, Wu BH, Xu ZK, Wan LS. End-functionalized polymers by controlled/living radical polymerizations: synthesis and applications. Polym Chem 2022. [DOI: 10.1039/d1py01252e] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
This review focuses on end-functionalized polymers synthesized by controlled/living radical polymerizations and the applications in fields including bioconjugate formation, surface modification, topology construction, and self-assembly.
Collapse
Affiliation(s)
- Di Zhou
- MOE Key Laboratory of Macromolecular Synthesis and Functionalization, MOE Engineering Research Center of Membrane and Water Treatment Technology, and Key Laboratory of Adsorption and Separation Materials & Technologies of Zhejiang Province, Department of Polymer Science and Engineering, Zhejiang University, Hangzhou 310027, China
| | - Liang-Wei Zhu
- MOE Key Laboratory of Macromolecular Synthesis and Functionalization, MOE Engineering Research Center of Membrane and Water Treatment Technology, and Key Laboratory of Adsorption and Separation Materials & Technologies of Zhejiang Province, Department of Polymer Science and Engineering, Zhejiang University, Hangzhou 310027, China
| | - Bai-Heng Wu
- MOE Key Laboratory of Macromolecular Synthesis and Functionalization, MOE Engineering Research Center of Membrane and Water Treatment Technology, and Key Laboratory of Adsorption and Separation Materials & Technologies of Zhejiang Province, Department of Polymer Science and Engineering, Zhejiang University, Hangzhou 310027, China
| | - Zhi-Kang Xu
- MOE Key Laboratory of Macromolecular Synthesis and Functionalization, MOE Engineering Research Center of Membrane and Water Treatment Technology, and Key Laboratory of Adsorption and Separation Materials & Technologies of Zhejiang Province, Department of Polymer Science and Engineering, Zhejiang University, Hangzhou 310027, China
| | - Ling-Shu Wan
- MOE Key Laboratory of Macromolecular Synthesis and Functionalization, MOE Engineering Research Center of Membrane and Water Treatment Technology, and Key Laboratory of Adsorption and Separation Materials & Technologies of Zhejiang Province, Department of Polymer Science and Engineering, Zhejiang University, Hangzhou 310027, China
| |
Collapse
|
6
|
Reiber T, Zavoiura O, Dose C, Yushchenko DA. Fluorophore Multimerization as an Efficient Approach towards Bright Protein Labels. European J Org Chem 2021. [DOI: 10.1002/ejoc.202100117] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Thorge Reiber
- Department of Chemical Biology Miltenyi Biotec B.V. & Co. KG Friedrich-Ebert Straße 68 51429 Bergisch Gladbach Germany
| | - Oleksandr Zavoiura
- Department of Chemical Biology Miltenyi Biotec B.V. & Co. KG Friedrich-Ebert Straße 68 51429 Bergisch Gladbach Germany
| | - Christian Dose
- Department of Chemical Biology Miltenyi Biotec B.V. & Co. KG Friedrich-Ebert Straße 68 51429 Bergisch Gladbach Germany
| | - Dmytro A. Yushchenko
- Department of Chemical Biology Miltenyi Biotec B.V. & Co. KG Friedrich-Ebert Straße 68 51429 Bergisch Gladbach Germany
- Laboratory of Chemical Biology The Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences Flemingovo namesti 2 16610 Prague 6 Czech Republic
| |
Collapse
|
7
|
Gaillot C, Delolme F, Fabre L, Charreyre MT, Ladavière C, Favier A. Taking Advantage of Oxidation to Characterize Thiol-Containing Polymer Chains by MALDI-TOF Mass Spectrometry. Anal Chem 2020; 92:3804-3809. [PMID: 31990181 DOI: 10.1021/acs.analchem.9b05207] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
MALDI-TOF mass spectrometry analyses revealed the oxidation of thiol-containing polymer chain-ends during sample preparation using THF as solvent. In these conditions, the extent of oxidation was hardly reproducible, and led to various types of oxidized compounds. Preparing the samples at the last minute using commercial THF stabilized with an antioxidant led to more reproducible results, with the least oxidation. However, it is demonstrated herein that thiol oxidation can be advantageously taken into profit to further ascertain the presence of the thiol at the polymer chain-end. To force thiol oxidation we used THF without any antioxidant stabilizer, thus more prone to form peroxides. Thiol-containing polymer chains can thereby be indirectly evidenced by the formation of oxidation products such as chain-chain disulfide bonds and sulfonic acid chains-ends. More importantly, in these oxidizing conditions and in the negative mode, sulfonic acid-terminated polymer chains can be more sensitively detected than thiol ones (the low pKa of sulfonic acids facilitating their anionization in MALDI source). In conclusion, performing MALDI-TOF mass spectrometry analyses in oxidizing conditions, as complement to regular analyses, was found to be very useful for the chain-end identification of different thiol-containing polymer chains.
Collapse
Affiliation(s)
- Cassandre Gaillot
- Univ Lyon, Université Lyon 1, INSA de Lyon, CNRS, Laboratoire Ingénierie des Matériaux Polymères, UMR5223, F-69621 Villeurbanne, France
| | - Frédéric Delolme
- Univ Lyon, SFR BioSciences, Université Lyon 1, ENS de Lyon, Protein Science Facility, CNRS UMS3444, INSERM US8, F-69007 Lyon, France
| | - Laura Fabre
- Univ Lyon, Université Lyon 1, INSA de Lyon, CNRS, Laboratoire Ingénierie des Matériaux Polymères, UMR5223, F-69621 Villeurbanne, France
| | - Marie-Thérèse Charreyre
- Univ Lyon, Université Lyon 1, INSA de Lyon, CNRS, Laboratoire Ingénierie des Matériaux Polymères, UMR5223, F-69621 Villeurbanne, France
| | - Catherine Ladavière
- Univ Lyon, Université Lyon 1, INSA de Lyon, CNRS, Laboratoire Ingénierie des Matériaux Polymères, UMR5223, F-69621 Villeurbanne, France
| | - Arnaud Favier
- Univ Lyon, Université Lyon 1, INSA de Lyon, CNRS, Laboratoire Ingénierie des Matériaux Polymères, UMR5223, F-69621 Villeurbanne, France
| |
Collapse
|
8
|
Zhang Y, Gambardella A, Üçüncü M, Geng J, Clavadetscher J, Bradley M, Lilienkampf A. Multifunctional, histidine-tagged polymers: antibody conjugation and signal amplification. Chem Commun (Camb) 2020; 56:13856-13859. [DOI: 10.1039/d0cc04591h] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A polymer scaffold, with multiple reactive centres, was synthesised by RAFT polymerisation and conjugated to the antibody herceptin. A hexahistidine RAFT agent enabled simple purification of polymer–protein conjugates.
Collapse
Affiliation(s)
- Yichuan Zhang
- EaStCHEM School of Chemistry
- University of Edinburgh
- Edinburgh
- UK
- Shenzhen Institutes of Advanced Technology
| | | | - Muhammed Üçüncü
- EaStCHEM School of Chemistry
- University of Edinburgh
- Edinburgh
- UK
- Department of Analytical Chemistry, Faculty of Pharmacy
| | - Jin Geng
- EaStCHEM School of Chemistry
- University of Edinburgh
- Edinburgh
- UK
- Shenzhen Institutes of Advanced Technology
| | | | - Mark Bradley
- EaStCHEM School of Chemistry
- University of Edinburgh
- Edinburgh
- UK
| | | |
Collapse
|
9
|
Berki T, Bakunts A, Duret D, Fabre L, Ladavière C, Orsi A, Charreyre MT, Raimondi A, van Anken E, Favier A. Advanced Fluorescent Polymer Probes for the Site-Specific Labeling of Proteins in Live Cells Using the HaloTag Technology. ACS OMEGA 2019; 4:12841-12847. [PMID: 31460409 PMCID: PMC6682114 DOI: 10.1021/acsomega.9b01643] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2019] [Accepted: 07/16/2019] [Indexed: 06/01/2023]
Abstract
We report the site-specific and covalent bioconjugation of fluorescent polymer chains to proteins in live cells using the HaloTag technology. Polymer chains bearing a Halo-ligand precisely located at their α-chain-end were synthesized in a controlled manner owing to the RAFT polymerization process. They were labeled in lateral position by several organic fluorophores such as AlexaFluor 647. The resulting Halo-ligand polymer probe was finally shown to selectively recognize and label HaloTag proteins present at the membrane of live cells using confocal fluorescence microscopy. Such a polymer bioconjugation approach holds great promises for various applications ranging from cell imaging to cell surface functionalization.
Collapse
Affiliation(s)
- Thomas Berki
- Univ
Lyon, Université Lyon 1, INSA de Lyon, CNRS, Laboratoire Ingénierie
des Matériaux Polymères, UMR5223, F-69621 Villeurbanne, France
- Univ
Lyon, Ens de Lyon, CNRS, Laboratoire Joliot-Curie, USR3010, F-69364 Lyon, France
| | - Anush Bakunts
- Division of Genetics and Cell Biology and Experimental
Imaging Center, San Raffaele Scientific
Institute, Milan 20132, Italy
| | - Damien Duret
- Univ
Lyon, Université Lyon 1, INSA de Lyon, CNRS, Laboratoire Ingénierie
des Matériaux Polymères, UMR5223, F-69621 Villeurbanne, France
- Univ
Lyon, Ens de Lyon, CNRS, Laboratoire Joliot-Curie, USR3010, F-69364 Lyon, France
| | - Laura Fabre
- Univ
Lyon, Université Lyon 1, INSA de Lyon, CNRS, Laboratoire Ingénierie
des Matériaux Polymères, UMR5223, F-69621 Villeurbanne, France
| | - Catherine Ladavière
- Univ
Lyon, Université Lyon 1, INSA de Lyon, CNRS, Laboratoire Ingénierie
des Matériaux Polymères, UMR5223, F-69621 Villeurbanne, France
| | - Andrea Orsi
- Division of Genetics and Cell Biology and Experimental
Imaging Center, San Raffaele Scientific
Institute, Milan 20132, Italy
- Università
Vita-Salute San Raffaele, Milan 20132, Italy
| | - Marie-Thérèse Charreyre
- Univ
Lyon, Université Lyon 1, INSA de Lyon, CNRS, Laboratoire Ingénierie
des Matériaux Polymères, UMR5223, F-69621 Villeurbanne, France
- Univ
Lyon, Ens de Lyon, CNRS, Laboratoire Joliot-Curie, USR3010, F-69364 Lyon, France
| | - Andrea Raimondi
- Division of Genetics and Cell Biology and Experimental
Imaging Center, San Raffaele Scientific
Institute, Milan 20132, Italy
| | - Eelco van Anken
- Division of Genetics and Cell Biology and Experimental
Imaging Center, San Raffaele Scientific
Institute, Milan 20132, Italy
- Università
Vita-Salute San Raffaele, Milan 20132, Italy
| | - Arnaud Favier
- Univ
Lyon, Université Lyon 1, INSA de Lyon, CNRS, Laboratoire Ingénierie
des Matériaux Polymères, UMR5223, F-69621 Villeurbanne, France
- Univ
Lyon, Ens de Lyon, CNRS, Laboratoire Joliot-Curie, USR3010, F-69364 Lyon, France
| |
Collapse
|