1
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Bhaiyya M, Panigrahi D, Rewatkar P, Haick H. Role of Machine Learning Assisted Biosensors in Point-of-Care-Testing For Clinical Decisions. ACS Sens 2024; 9:4495-4519. [PMID: 39145721 PMCID: PMC11443532 DOI: 10.1021/acssensors.4c01582] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2024] [Revised: 07/31/2024] [Accepted: 08/02/2024] [Indexed: 08/16/2024]
Abstract
Point-of-Care-Testing (PoCT) has emerged as an essential component of modern healthcare, providing rapid, low-cost, and simple diagnostic options. The integration of Machine Learning (ML) into biosensors has ushered in a new era of innovation in the field of PoCT. This article investigates the numerous uses and transformational possibilities of ML in improving biosensors for PoCT. ML algorithms, which are capable of processing and interpreting complicated biological data, have transformed the accuracy, sensitivity, and speed of diagnostic procedures in a variety of healthcare contexts. This review explores the multifaceted applications of ML models, including classification and regression, displaying how they contribute to improving the diagnostic capabilities of biosensors. The roles of ML-assisted electrochemical sensors, lab-on-a-chip sensors, electrochemiluminescence/chemiluminescence sensors, colorimetric sensors, and wearable sensors in diagnosis are explained in detail. Given the increasingly important role of ML in biosensors for PoCT, this study serves as a valuable reference for researchers, clinicians, and policymakers interested in understanding the emerging landscape of ML in point-of-care diagnostics.
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Affiliation(s)
- Manish Bhaiyya
- Department
of Chemical Engineering and the Russell Berrie Nanotechnology Institute, Technion, Israel Institute of Technology, Haifa 3200003, Israel
- School
of Electrical and Electronics Engineering, Ramdeobaba University, Nagpur 440013, India
| | - Debdatta Panigrahi
- Department
of Chemical Engineering and the Russell Berrie Nanotechnology Institute, Technion, Israel Institute of Technology, Haifa 3200003, Israel
| | - Prakash Rewatkar
- Department
of Mechanical Engineering, Israel Institute
of Technology, Haifa 3200003, Israel
| | - Hossam Haick
- Department
of Chemical Engineering and the Russell Berrie Nanotechnology Institute, Technion, Israel Institute of Technology, Haifa 3200003, Israel
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2
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Zhang B, Hou Z, Yang Y, Wong KC, Zhu H, Li X. SOFB is a comprehensive ensemble deep learning approach for elucidating and characterizing protein-nucleic-acid-binding residues. Commun Biol 2024; 7:679. [PMID: 38830995 PMCID: PMC11148103 DOI: 10.1038/s42003-024-06332-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Accepted: 05/15/2024] [Indexed: 06/05/2024] Open
Abstract
Proteins and nucleic-acids are essential components of living organisms that interact in critical cellular processes. Accurate prediction of nucleic acid-binding residues in proteins can contribute to a better understanding of protein function. However, the discrepancy between protein sequence information and obtained structural and functional data renders most current computational models ineffective. Therefore, it is vital to design computational models based on protein sequence information to identify nucleic acid binding sites in proteins. Here, we implement an ensemble deep learning model-based nucleic-acid-binding residues on proteins identification method, called SOFB, which characterizes protein sequences by learning the semantics of biological dynamics contexts, and then develop an ensemble deep learning-based sequence network to learn feature representation and classification by explicitly modeling dynamic semantic information. Among them, the language learning model, which is constructed from natural language to biological language, captures the underlying relationships of protein sequences, and the ensemble deep learning-based sequence network consisting of different convolutional layers together with Bi-LSTM refines various features for optimal performance. Meanwhile, to address the imbalanced issue, we adopt ensemble learning to train multiple models and then incorporate them. Our experimental results on several DNA/RNA nucleic-acid-binding residue datasets demonstrate that our proposed model outperforms other state-of-the-art methods. In addition, we conduct an interpretability analysis of the identified nucleic acid binding residue sequences based on the attention weights of the language learning model, revealing novel insights into the dynamic semantic information that supports the identified nucleic acid binding residues. SOFB is available at https://github.com/Encryptional/SOFB and https://figshare.com/articles/online_resource/SOFB_figshare_rar/25499452 .
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Affiliation(s)
- Bin Zhang
- School of Artificial Intelligence, Jilin University, Changchun, China
| | - Zilong Hou
- School of Artificial Intelligence, Jilin University, Changchun, China
| | - Yuning Yang
- Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Canada
| | - Ka-Chun Wong
- Department of Computer Science, City University of Hong Kong, Hong Kong, Hong Kong SAR
| | - Haoran Zhu
- School of Artificial Intelligence, Jilin University, Changchun, China.
| | - Xiangtao Li
- School of Artificial Intelligence, Jilin University, Changchun, China.
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3
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Liu L, Du K. A perspective on computer vision in biosensing. BIOMICROFLUIDICS 2024; 18:011301. [PMID: 38223547 PMCID: PMC10787640 DOI: 10.1063/5.0185732] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2023] [Accepted: 12/26/2023] [Indexed: 01/16/2024]
Abstract
Computer vision has become a powerful tool in the field of biosensing, aiding in the development of innovative and precise systems for the analysis and interpretation of biological data. This interdisciplinary approach harnesses the capabilities of computer vision algorithms and techniques to extract valuable information from various biosensing applications, including medical diagnostics, environmental monitoring, and food health. Despite years of development, there is still significant room for improvement in this area. In this perspective, we outline how computer vision is applied to raw sensor data in biosensors and its advantages to biosensing applications. We then discuss ongoing research and developments in the field and subsequently explore the challenges and opportunities that computer vision faces in biosensor applications. We also suggest directions for future work, ultimately underscoring the significant impact of computer vision on advancing biosensing technologies and their applications.
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Affiliation(s)
- Li Liu
- Department of Chemical and Environmental Engineering, University of California, Riverside, California 92521, USA
| | - Ke Du
- Department of Chemical and Environmental Engineering, University of California, Riverside, California 92521, USA
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4
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Huang J, Gao Y, Chang Y, Peng J, Yu Y, Wang B. Machine Learning in Bioelectrocatalysis. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024; 11:e2306583. [PMID: 37946709 PMCID: PMC10787072 DOI: 10.1002/advs.202306583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Indexed: 11/12/2023]
Abstract
At present, the global energy crisis and environmental pollution coexist, and the demand for sustainable clean energy has been highly concerned. Bioelectrocatalysis that combines the benefits of biocatalysis and electrocatalysis produces high-value chemicals, clean biofuel, and biodegradable new materials. It has been applied in biosensors, biofuel cells, and bioelectrosynthesis. However, there are certain flaws in the application process of bioelectrocatalysis, such as low accuracy/efficiency, poor stability, and limited experimental conditions. These issues can possibly be solved using machine learning (ML) in recent reports although the combination of them is still not mature. To summarize the progress of ML in bioelectrocatalysis, this paper first introduces the modeling process of ML, then focuses on the reports of ML in bioelectrocatalysis, and ultimately makes a summary and outlook about current issues and future directions. It is believed that there is plenty of scope for this interdisciplinary research direction.
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Affiliation(s)
- Jiamin Huang
- Department of Environmental Science and EngineeringUniversity of Science and Technology BeijingBeijing100083China
- CAS Key Laboratory of Nanosystem and Hierarchical FabricationNational Center for Nanoscience and TechnologyBeijing100190China
| | - Yang Gao
- CAS Key Laboratory of Nanosystem and Hierarchical FabricationNational Center for Nanoscience and TechnologyBeijing100190China
| | - Yanhong Chang
- Department of Environmental Science and EngineeringUniversity of Science and Technology BeijingBeijing100083China
| | - Jiajie Peng
- School of Computer ScienceNorthwestern Polytechnical UniversityXi'an710072China
| | - Yadong Yu
- College of Biotechnology and Pharmaceutical EngineeringNanjing Tech UniversityNanjing211816China
| | - Bin Wang
- CAS Key Laboratory of Nanosystem and Hierarchical FabricationNational Center for Nanoscience and TechnologyBeijing100190China
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5
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Zhang J, Srivatsa P, Ahmadzai FH, Liu Y, Song X, Karpatne A, Kong Z, Johnson BN. Reduction of Biosensor False Responses and Time Delay Using Dynamic Response and Theory-Guided Machine Learning. ACS Sens 2023; 8:4079-4090. [PMID: 37931911 PMCID: PMC10683760 DOI: 10.1021/acssensors.3c01258] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Accepted: 09/29/2023] [Indexed: 11/08/2023]
Abstract
Here, we provide a new methodology for reducing false results and time delay of biosensors, which are barriers to industrial, healthcare, military, and consumer applications. We show that integrating machine learning with domain knowledge in biosensing can complement and improve the biosensor accuracy and speed relative to the performance achieved by traditional regression analysis of a standard curve based on the biosensor steady-state response. The methodology was validated by rapid and accurate quantification of microRNA across the nanomolar to femtomolar range using the dynamic response of cantilever biosensors. Theory-guided feature engineering improved the performance and efficiency of several classification models relative to the performance achieved using traditional feature engineering methods (TSFRESH). In addition to the entire dynamic response, the technique enabled rapid and accurate quantification of the target analyte concentration and false-positive and false-negative results using the initial transient response, thereby reducing the required data acquisition time (i.e., time delay). We show that model explainability can be achieved by combining theory-guided feature engineering and feature importance analysis. The performance of multiple classifiers using both TSFRESH- and theory-based features from the biosensor's initial transient response was similar to that achieved using the entire dynamic response with data augmentation. We also show that the methodology can guide design of experiments for high-performance biosensing applications, specifically, the selection of data acquisition parameters (e.g., time) based on potential application-dependent performance thresholds. This work provides an example of the opportunities for improving biosensor performance, such as reducing biosensor false results and time delay, using explainable machine learning models supervised by domain knowledge in biosensing.
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Affiliation(s)
- Junru Zhang
- Grado
Department of Industrial and Systems Engineering, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - Purna Srivatsa
- Department
of Computer Science, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - Fazel Haq Ahmadzai
- Grado
Department of Industrial and Systems Engineering, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - Yang Liu
- Grado
Department of Industrial and Systems Engineering, Virginia Tech, Blacksburg, Virginia 24061, United States
- School
of Neuroscience, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - Xuerui Song
- Grado
Department of Industrial and Systems Engineering, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - Anuj Karpatne
- Department
of Computer Science, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - Zhenyu Kong
- Grado
Department of Industrial and Systems Engineering, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - Blake N. Johnson
- Grado
Department of Industrial and Systems Engineering, Virginia Tech, Blacksburg, Virginia 24061, United States
- School
of Neuroscience, Virginia Tech, Blacksburg, Virginia 24061, United States
- Department
of Materials Science and Engineering, Virginia
Tech, Blacksburg, Virginia 24061, United States
- Department
of Chemical Engineering, Virginia Tech, Blacksburg, Virginia 24061, United States
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6
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Georgas A, Georgas K, Hristoforou E. Advancements in SARS-CoV-2 Testing: Enhancing Accessibility through Machine Learning-Enhanced Biosensors. MICROMACHINES 2023; 14:1518. [PMID: 37630054 PMCID: PMC10456522 DOI: 10.3390/mi14081518] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Revised: 07/26/2023] [Accepted: 07/27/2023] [Indexed: 08/27/2023]
Abstract
The COVID-19 pandemic highlighted the importance of widespread testing for SARS-CoV-2, leading to the development of various new testing methods. However, traditional invasive sampling methods can be uncomfortable and even painful, creating barriers to testing accessibility. In this article, we explore how machine learning-enhanced biosensors can enable non-invasive sampling for SARS-CoV-2 testing, revolutionizing the way we detect and monitor the virus. By detecting and measuring specific biomarkers in body fluids or other samples, these biosensors can provide accurate and accessible testing options that do not require invasive procedures. We provide examples of how these biosensors can be used for non-invasive SARS-CoV-2 testing, such as saliva-based testing. We also discuss the potential impact of non-invasive testing on accessibility and accuracy of testing. Finally, we discuss potential limitations or biases associated with the machine learning algorithms used to improve the biosensors and explore future directions in the field of machine learning-enhanced biosensors for SARS-CoV-2 testing, considering their potential impact on global healthcare and disease control.
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Affiliation(s)
- Antonios Georgas
- School of Electrical and Computer Engineering, National Technical University of Athens, 15780 Athens, Greece; (K.G.); (E.H.)
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7
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McLamore ES, Datta SPA. A Connected World: System-Level Support Through Biosensors. ANNUAL REVIEW OF ANALYTICAL CHEMISTRY (PALO ALTO, CALIF.) 2023; 16:285-309. [PMID: 37018797 DOI: 10.1146/annurev-anchem-100322-040914] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
The goal of protecting the health of future generations is a blueprint for future biosensor design. Systems-level decision support requires that biosensors provide meaningful service to society. In this review, we summarize recent developments in cyber physical systems and biosensors connected with decision support. We identify key processes and practices that may guide the establishment of connections between user needs and biosensor engineering using an informatics approach. We call for data science and decision science to be formally connected with sensor science for understanding system complexity and realizing the ambition of biosensors-as-a-service. This review calls for a focus on quality of service early in the design process as a means to improve the meaningful value of a given biosensor. We close by noting that technology development, including biosensors and decision support systems, is a cautionary tale. The economics of scale govern the success, or failure, of any biosensor system.
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Affiliation(s)
- Eric S McLamore
- Department of Agricultural Sciences, Clemson University, Clemson, South Carolina, USA;
- Department of Environmental Engineering and Earth Sciences, Clemson University, Clemson, South Carolina, USA
| | - Shoumen P A Datta
- MIT Auto-ID Labs, Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA
- Medical Device (MDPnP) Interoperability and Cybersecurity Labs, Department of Anesthesiology, Massachusetts General Hospital, Harvard Medical School, Cambridge, Massachusetts, USA
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8
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Gao Q, Fu J, Li S, Ming D. Applications of Transistor-Based Biochemical Sensors. BIOSENSORS 2023; 13:bios13040469. [PMID: 37185544 PMCID: PMC10136501 DOI: 10.3390/bios13040469] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Revised: 04/07/2023] [Accepted: 04/10/2023] [Indexed: 05/17/2023]
Abstract
Transistor-based biochemical sensors feature easy integration with electronic circuits and non-invasive real-time detection. They have been widely used in intelligent wearable devices, electronic skins, and biological analyses and have shown broad application prospects in intelligent medical detection. Field-effect transistor (FET) sensors have high sensitivity, reasonable specificity, rapid response, and portability and provide unique signal amplification during biochemical detection. Organic field-effect transistor (OFET) sensors are lightweight, flexible, foldable, and biocompatible with wearable devices. Organic electrochemical transistor (OECT) sensors convert biological signals in body fluids into electrical signals for artificial intelligence analysis. In addition to biochemical markers in body fluids, electrophysiology indicators such as electrocardiogram (ECG) signals and body temperature can also cause changes in the current or voltage of transistor-based biochemical sensors. When modified with sensitive substances, sensors can detect specific analytes, improve sensitivity, broaden the detection range, and reduce the limit of detection (LoD). In this review, we introduce three kinds of transistor-based biochemical sensors: FET, OFET, and OECT. We also discuss the fabrication processes for transistor sources, drains, and gates. Furthermore, we demonstrated three sensor types for body fluid biomarkers, electrophysiology signals, and development trends. Transistor-based biochemical sensors exhibit excellent potential in multi-mode intelligent analysis and are good candidates for the next generation of intelligent point-of-care testing (iPOCT).
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Affiliation(s)
- Qiya Gao
- Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China
| | - Jie Fu
- Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China
| | - Shuang Li
- Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China
| | - Dong Ming
- Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China
- Department of Biomedical Engineering, College of Precision Instruments and Optoelectronics Engineering, Tianjin University, Tianjin 300072, China
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9
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Giordano GF, Ferreira LF, Bezerra ÍRS, Barbosa JA, Costa JNY, Pimentel GJC, Lima RS. Machine learning toward high-performance electrochemical sensors. Anal Bioanal Chem 2023:10.1007/s00216-023-04514-z. [PMID: 36637495 PMCID: PMC9838410 DOI: 10.1007/s00216-023-04514-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Revised: 12/30/2022] [Accepted: 01/02/2023] [Indexed: 01/14/2023]
Abstract
The so-coined fourth paradigm in science has reached the sensing area, with the use of machine learning (ML) toward data-driven improvements in sensitivity, reproducibility, and accuracy, along with the determination of multiple targets from a single measurement using multi-output regression models. Particularly, the use of supervised ML models trained on large data sets produced by electrical and electrochemical bio/sensors has emerged as an impacting trend in the literature by allowing accurate analyses even in the presence of usual issues such as electrode fouling, poor signal-to-noise ratio, chemical interferences, and matrix effects. In this trend article, apart from an outlook for the coming years, we present examples from the literature that demonstrate how helpful ML algorithms can be for dispensing the adoption of experimental methods to address the aforesaid interfering issues, ultimately contributing to translate testing technologies into on-site, practical, and daily applications.
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Affiliation(s)
- Gabriela F. Giordano
- Brazilian Nanotechnology National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, São Paulo 13083-100 Brazil
| | - Larissa F. Ferreira
- Brazilian Nanotechnology National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, São Paulo 13083-100 Brazil ,Institute of Chemistry, University of Campinas, Campinas, São Paulo 13083-970 Brazil
| | - Ítalo R. S. Bezerra
- Brazilian Nanotechnology National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, São Paulo 13083-100 Brazil ,Center for Natural and Human Sciences, Federal University of ABC, Santo André, São Paulo 09210-580 Brazil
| | - Júlia A. Barbosa
- Brazilian Nanotechnology National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, São Paulo 13083-100 Brazil ,São Carlos Institute of Chemistry, University of São Paulo, São Carlos, São Paulo 13566-590 Brazil
| | - Juliana N. Y. Costa
- Brazilian Nanotechnology National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, São Paulo 13083-100 Brazil ,Center for Natural and Human Sciences, Federal University of ABC, Santo André, São Paulo 09210-580 Brazil
| | - Gabriel J. C. Pimentel
- Brazilian Nanotechnology National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, São Paulo 13083-100 Brazil ,School of Sciences, São Paulo State University, Bauru, São Paulo 17033-360 Brazil
| | - Renato S. Lima
- Brazilian Nanotechnology National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, São Paulo 13083-100 Brazil ,Institute of Chemistry, University of Campinas, Campinas, São Paulo 13083-970 Brazil ,Center for Natural and Human Sciences, Federal University of ABC, Santo André, São Paulo 09210-580 Brazil ,São Carlos Institute of Chemistry, University of São Paulo, São Carlos, São Paulo 13566-590 Brazil
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10
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Zhang Y, Hu Y, Jiang N, Yetisen AK. Wearable artificial intelligence biosensor networks. Biosens Bioelectron 2023; 219:114825. [PMID: 36306563 DOI: 10.1016/j.bios.2022.114825] [Citation(s) in RCA: 17] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2022] [Revised: 10/12/2022] [Accepted: 10/16/2022] [Indexed: 11/07/2022]
Abstract
The demand for high-quality healthcare and well-being services is remarkably increasing due to the ageing global population and modern lifestyles. Recently, the integration of wearables and artificial intelligence (AI) has attracted extensive academic and technological attention for its powerful high-dimensional data processing of wearable biosensing networks. This work reviews the recent developments in AI-assisted wearable biosensing devices in disease diagnostics and fatigue monitoring demonstrating the trend towards personalised medicine with highly efficient, cost-effective, and accurate point-of-care diagnosis by finding hidden patterns in biosensing data and detecting abnormalities. The reliability of adaptive learning and synthetic data and data privacy still need further investigation to realise personalised medicine in the next decade. Due to the worldwide popularity of smartphones, they have been utilised for sensor readout, wireless data transfer, data processing and storage, result display, and cloud server communication leading to the development of smartphone-based biosensing systems. The recent advances have demonstrated a promising future for the healthcare system because of the increasing data processing power, transfer efficiency and storage capacity and diversifying functionalities.
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Affiliation(s)
- Yihan Zhang
- Department of Chemical Engineering, Imperial College London, South Kensington, London, SW7 2BU, UK
| | - Yubing Hu
- Department of Chemical Engineering, Imperial College London, South Kensington, London, SW7 2BU, UK.
| | - Nan Jiang
- West China School of Basic Medical Sciences & Forensic Medicine, Sichuan University, Chengdu, 610041, China; Jinfeng Laboratory, Chongqing, 401329, China.
| | - Ali K Yetisen
- Department of Chemical Engineering, Imperial College London, South Kensington, London, SW7 2BU, UK
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11
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Machine learning–based sensor array: full and reduced fluorescence data for versatile analyte detection based on gold nanocluster as a single probe. Anal Bioanal Chem 2022; 414:8365-8378. [DOI: 10.1007/s00216-022-04372-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2022] [Revised: 09/25/2022] [Accepted: 10/06/2022] [Indexed: 11/01/2022]
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12
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Paul A, Dhamu VN, Muthukumar S, Prasad S. E.P.A.S.S: Electroanalytical Pillbox Assessment Sensor System, A Case Study Using Metformin Hydrochloride. Anal Chem 2022; 94:10617-10625. [PMID: 35867902 DOI: 10.1021/acs.analchem.2c00611] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Adulteration of medications is an emerging and significant threat to human health and well-being, even though adulterants are still often not considered seriously in clinical or forensic toxicology. Screening of drug adulterations is a major challenge and concern for regulatory authorities worldwide. Metformin hydrochloride, an important drug to treat diabetes, is found to be adulterated worldwide and a major reason to worry about the health and safety procedure. We have demonstrated a first-of-a-kind electrochemical biomedical device utilizing exfoliated graphene oxide (GO)─Nafion-modified customized gold screen-printed electrodes (spiral electrochemical notification-coupled electrode, SENCE), driven by electrochemical adsorptive stripping voltammetry, to identify the trace level adulteration in metformin. The GO-Nafion-SPE interface has been characterized by powder X-ray diffraction, X-ray photoelectron spectroscopy, scanning electron microscopy, energy-dispersive X-ray analysis, and Fourier transform infrared. Custom-made screen-printed SENCEs have been functionalized with GO nanoparticles (transducer) to obtain a fingerprint signal response of metformin using differential pulse voltammetry. A linear calibrated dose response has been obtained with n = 3 repetitions with a low limit of detection of 10 ppm for metformin. We have used the sensing response as a function of adulteration, and it is extensively supported by rigorous statistical analysis along with the help of the machine learning tool. This is a first-of-its-kind IoT-enabled electrochemical sensor and analysis platform that can detect drug adulteration as a low, medium, and high output.
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Affiliation(s)
- Anirban Paul
- Department of Bioengineering, University of Texas at Dallas, Richardson, Texas 75080, United States
| | - Vikram Narayanan Dhamu
- Department of Bioengineering, University of Texas at Dallas, Richardson, Texas 75080, United States
| | - Sriram Muthukumar
- EnLiSense LLC, 1813 Audubon Pondway, Allen, Texas 75013, United States
| | - Shalini Prasad
- Department of Bioengineering, University of Texas at Dallas, Richardson, Texas 75080, United States.,EnLiSense LLC, 1813 Audubon Pondway, Allen, Texas 75013, United States
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Moreira G, Casso-Hartmann L, Datta SPA, Dean D, McLamore E, Vanegas D. Development of a Biosensor Based on Angiotensin-Converting Enzyme II for Severe Acute Respiratory Syndrome Coronavirus 2 Detection in Human Saliva. FRONTIERS IN SENSORS 2022; 3:917380. [PMID: 35992634 PMCID: PMC9386735 DOI: 10.3389/fsens.2022.917380] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the novel coronavirus responsible for COVID-19. Infection in humans requires angiotensin-converting enzyme II (hACE2) as the point of entry for SARS-CoV-2. PCR testing is generally definitive but expensive, although it is highly sensitive and accurate. Biosensor-based monitoring could be a low-cost, accurate, and non-invasive approach to improve testing capacity. We develop a capacitive hACE2 biosensor for intact SARS-CoV-2 detection in saliva. Laser-induced graphene (LIG) electrodes were modified with platinum nanoparticles. The quality control of LIG electrodes was performed using cyclic voltammetry. Truncated hACE2 was used as a biorecognition element and attached to the electrode surface by streptavidin-biotin coupling. Biolayer interferometry was used for qualitative interaction screening of hACE2 with UV-attenuated virions. Electrochemical impedance spectroscopy (EIS) was used for signal transduction. Truncated hACE2 binds wild-type SARS-CoV-2 and its variants with greater avidity than human coronavirus (common cold virus). The limit of detection (LoD) is estimated to be 2,960 copies/ml. The detection process usually takes less than 30 min. The strength of these features makes the hACE2 biosensor a potentially low-cost approach for screening SARS-CoV-2 in non-clinical settings with high demand for rapid testing (for example, schools and airports).
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Affiliation(s)
- Geisianny Moreira
- Department of Environmental Engineering and Earth Sciences, Clemson University, Clemson, SC, United States
- Global Alliance for Rapid Diagnostics, Michigan State University, Cambridge, MI, United States
| | - Lisseth Casso-Hartmann
- Department of Environmental Engineering and Earth Sciences, Clemson University, Clemson, SC, United States
| | - Shoumen Palit Austin Datta
- Medical Device (MDPnP) Interoperability and Cybersecurity Labs, Biomedical Engineering Program, Department of Anesthesiology, Massachusetts General Hospital, Harvard Medical School, Cambridge, MA, United States
- MIT Auto-ID Labs, Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA, United States
| | - Delphine Dean
- Center for Innovative Medical Devices and Sensors (REDDI Lab), Clemson University, Clemson, SC, United States
- Department of Bioengineering, Clemson University, Clemson, SC, United States
| | - Eric McLamore
- Department of Environmental Engineering and Earth Sciences, Clemson University, Clemson, SC, United States
- Global Alliance for Rapid Diagnostics, Michigan State University, Cambridge, MI, United States
- Department of Agricultural Sciences, Clemson University, Clemson, SC, United States
| | - Diana Vanegas
- Department of Environmental Engineering and Earth Sciences, Clemson University, Clemson, SC, United States
- Global Alliance for Rapid Diagnostics, Michigan State University, Cambridge, MI, United States
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14
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Nelis JLD, Bose U, Broadbent JA, Hughes J, Sikes A, Anderson A, Caron K, Schmoelzl S, Colgrave ML. Biomarkers and biosensors for the diagnosis of noncompliant pH, dark cutting beef predisposition, and welfare in cattle. Compr Rev Food Sci Food Saf 2022; 21:2391-2432. [DOI: 10.1111/1541-4337.12935] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Revised: 02/02/2022] [Accepted: 02/09/2022] [Indexed: 11/29/2022]
Affiliation(s)
| | - Utpal Bose
- CSIRO Agriculture and Food St Lucia Australia
| | | | | | - Anita Sikes
- CSIRO Agriculture and Food Coopers Plains Australia
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15
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Adams AC, Jha S, Lary DJ, Slinker JD. Machine Learning for Estimating Electron Transfer Rates From Square Wave Voltammetry. Chempluschem 2021; 87:e202100418. [PMID: 34859611 DOI: 10.1002/cplu.202100418] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2021] [Revised: 11/11/2021] [Indexed: 11/12/2022]
Abstract
Electrochemistry of surface-bound molecules is of high importance for numerous electronic and sensor applications. Extracting the electron transfer rate is beneficial for understanding surface-bound processes, but it requires experimental or computational rigor. We evaluate methods to determine electron transfer rates from large voltammetry sets from experiments via machine learning using decision tree ensembles, neural networks, and gaussian process regression models. We applied these to reproduce computational measures of electron transfer rates modeled by first principles. The best machine learning models were a random forest with 80 decision trees and a neural network with Bayesian regularization, producing root mean squared errors of 0.37 and 0.49 s-1 , respectively, corresponding to mean percent errors of 0.38 % and 0.52 %, respectively. This work establishes machine learning methods for rapidly acquiring electron transfer rates across large datasets for widespread applications.
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Affiliation(s)
- Austen C Adams
- Department of Physics, The University of Texas at Dallas, 800W. Campbell Rd., SCI 10, Richardson, TX 75080, USA
| | - Sauraj Jha
- Department of Materials Science and Engineering, The University of Texas at Dallas, 800W. Campbell Rd., SCI 10, Richardson, TX 75080, USA
| | - David J Lary
- Department of Physics, The University of Texas at Dallas, 800W. Campbell Rd., SCI 10, Richardson, TX 75080, USA
| | - Jason D Slinker
- Department of Physics, The University of Texas at Dallas, 800W. Campbell Rd., SCI 10, Richardson, TX 75080, USA
- Department of Materials Science and Engineering, The University of Texas at Dallas, 800W. Campbell Rd., SCI 10, Richardson, TX 75080, USA
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16
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Puthongkham P, Wirojsaengthong S, Suea-Ngam A. Machine learning and chemometrics for electrochemical sensors: moving forward to the future of analytical chemistry. Analyst 2021; 146:6351-6364. [PMID: 34585185 DOI: 10.1039/d1an01148k] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Electrochemical sensors and biosensors have been successfully used in a wide range of applications, but systematic optimization and nonlinear relationships have been compromised for electrode fabrication and data analysis. Machine learning and experimental designs are chemometric tools that have been proved to be useful in method development and data analysis. This minireview summarizes recent applications of machine learning and experimental designs in electroanalytical chemistry. First, experimental designs, e.g., full factorial, central composite, and Box-Behnken are discussed as systematic approaches to optimize electrode fabrication to consider the effects from individual variables and their interactions. Then, the principles of machine learning algorithms, including linear and logistic regressions, neural network, and support vector machine, are introduced. These machine learning models have been implemented to extract complex relationships between chemical structures and their electrochemical properties and to analyze complicated electrochemical data to improve calibration and analyte classification, such as in electronic tongues. Lastly, the future of machine learning and experimental designs in electrochemical sensors is outlined. These chemometric strategies will accelerate the development and enhance the performance of electrochemical devices for point-of-care diagnostics and commercialization.
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Affiliation(s)
- Pumidech Puthongkham
- Department of Chemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand. .,Electrochemistry and Optical Spectroscopy Center of Excellence (EOSCE), Chulalongkorn University, Bangkok 10330, Thailand.,Center of Excellence in Responsive Wearable Materials, Chulalongkorn University, Bangkok 10330, Thailand
| | - Supacha Wirojsaengthong
- Department of Chemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand.
| | - Akkapol Suea-Ngam
- Department of Materials, Department of Bioengineering, and Institute of Biomedical Engineering, Imperial College London, London, SW7 2AZ, UK
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17
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Taylor J, Ccopa-Rivera E, Kim S, Campbell R, Summerscales R, Kwon H. Machine Learning Analysis for Phenolic Compound Monitoring Using a Mobile Phone-Based ECL Sensor. SENSORS 2021; 21:s21186004. [PMID: 34577213 PMCID: PMC8473430 DOI: 10.3390/s21186004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/27/2021] [Revised: 08/25/2021] [Accepted: 09/03/2021] [Indexed: 01/23/2023]
Abstract
Machine learning (ML) can be an appropriate approach to overcoming common problems associated with sensors for low-cost, point-of-care diagnostics, such as non-linearity, multidimensionality, sensor-to-sensor variations, presence of anomalies, and ambiguity in key features. This study proposes a novel approach based on ML algorithms (neural nets, Gaussian Process Regression, among others) to model the electrochemiluminescence (ECL) quenching mechanism of the [Ru(bpy)3]2+/TPrA system by phenolic compounds, thus allowing their detection and quantification. The relationships between the concentration of phenolic compounds and their effect on the ECL intensity and current data measured using a mobile phone-based ECL sensor is investigated. The ML regression tasks with a tri-layer neural net using minimally processed time series data showed better or comparable detection performance compared to the performance using extracted key features without extra preprocessing. Combined multimodal characteristics produced an 80% more enhanced performance with multilayer neural net algorithms than a single feature based-regression analysis. The results demonstrated that the ML could provide a robust analysis framework for sensor data with noises and variability. It demonstrates that ML strategies can play a crucial role in chemical or biosensor data analysis, providing a robust model by maximizing all the obtained information and integrating nonlinearity and sensor-to-sensor variations.
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Affiliation(s)
- Joseph Taylor
- School of Engineering, Andrews University, Berrien Springs, MI 49104, USA; (J.T.); (E.C.-R.)
| | - Elmer Ccopa-Rivera
- School of Engineering, Andrews University, Berrien Springs, MI 49104, USA; (J.T.); (E.C.-R.)
| | - Solomon Kim
- Department of Computing, Andrews University, Berrien Springs, MI 49104, USA; (S.K.); (R.C.); (R.S.)
| | - Reise Campbell
- Department of Computing, Andrews University, Berrien Springs, MI 49104, USA; (S.K.); (R.C.); (R.S.)
| | - Rodney Summerscales
- Department of Computing, Andrews University, Berrien Springs, MI 49104, USA; (S.K.); (R.C.); (R.S.)
| | - Hyun Kwon
- School of Engineering, Andrews University, Berrien Springs, MI 49104, USA; (J.T.); (E.C.-R.)
- Correspondence: ; Tel.: +1-269-471-3890
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18
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FEAST of biosensors: Food, environmental and agricultural sensing technologies (FEAST) in North America. Biosens Bioelectron 2021; 178:113011. [PMID: 33517232 DOI: 10.1016/j.bios.2021.113011] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Revised: 01/04/2021] [Accepted: 01/16/2021] [Indexed: 02/08/2023]
Abstract
We review the challenges and opportunities for biosensor research in North America aimed to accelerate translational research. We call for platform approaches based on: i) tools that can support interoperability between food, environment and agriculture, ii) open-source tools for analytics, iii) algorithms used for data and information arbitrage, and iv) use-inspired sensor design. We summarize select mobile devices and phone-based biosensors that couple analytical systems with biosensors for improving decision support. Over 100 biosensors developed by labs in North America were analyzed, including lab-based and portable devices. The results of this literature review show that nearly one quarter of the manuscripts focused on fundamental platform development or material characterization. Among the biosensors analyzed for food (post-harvest) or environmental applications, most devices were based on optical transduction (whether a lab assay or portable device). Most biosensors for agricultural applications were based on electrochemical transduction and few utilized a mobile platform. Presently, the FEAST of biosensors has produced a wealth of opportunity but faces a famine of actionable information without a platform for analytics.
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19
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Pradhan R, Kalkal A, Jindal S, Packirisamy G, Manhas S. Four electrode-based impedimetric biosensors for evaluating cytotoxicity of tamoxifen on cervical cancer cells. RSC Adv 2020; 11:798-806. [PMID: 35423705 PMCID: PMC8693377 DOI: 10.1039/d0ra09155c] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2020] [Accepted: 12/06/2020] [Indexed: 11/21/2022] Open
Abstract
In the current study, novel four electrode-based impedimetric biosensors have been fabricated using photolithography techniques and utilized to evaluate the cytotoxicity of tamoxifen on cervical cancer cell lines. The cell impedance was measured employing the electric cell-substrate impedance sensing (ECIS) method over the frequency range of 100 Hz to 1 MHz. The results obtained from impedimetric biosensors indicate that tamoxifen caused a significant reduction in the number of HeLa cells on the electrode surfaces in a dose-dependent manner. Next, the impedance values recorded by the fabricated biosensors have been compared with the results obtained from the different conventional techniques such as 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT), live-dead cell assay, and flow cytometric analysis to estimate the cytotoxicity of tamoxifen. The impedimetric cytotoxicity of tamoxifen over the growth and proliferation of HeLa cells correlates well with the traditional methods. In addition, the IC50 values obtained from impedimetric data and MTT assay are comparable, signifying that the ECIS technique can be an alternative method to assess the cytotoxicity of different novel drugs. The working principle of the biosensor has been examined by scanning electron microscopy, indicating the detachment of cells from gold surfaces in a dose-dependent manner, signifying the decrease in impedance at higher drug doses.
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Affiliation(s)
- Rangadhar Pradhan
- Centre for Nanotechnology, Indian Institute of Technology Roorkee Roorkee-247667 Uttarakhand India +91-1332-273560 +91-1332-285490 +91-1332-285650
| | - Ashish Kalkal
- Department of Biotechnology, Indian Institute of Technology Roorkee Roorkee-247667 Uttarakhand India
| | - Shlok Jindal
- Department of Biotechnology, Indian Institute of Technology Roorkee Roorkee-247667 Uttarakhand India
| | - Gopinath Packirisamy
- Centre for Nanotechnology, Indian Institute of Technology Roorkee Roorkee-247667 Uttarakhand India +91-1332-273560 +91-1332-285490 +91-1332-285650
- Department of Biotechnology, Indian Institute of Technology Roorkee Roorkee-247667 Uttarakhand India
| | - Sanjeev Manhas
- Department of Electronics and Communication Engineering, Indian Institute of Technology Roorkee Roorkee-247667 Uttarakhand India +91-1332-285368 +91-1332-285147
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20
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Abstract
Chemometrics play a critical role in biosensors-based detection, analysis, and diagnosis. Nowadays, as a branch of artificial intelligence (AI), machine learning (ML) have achieved impressive advances. However, novel advanced ML methods, especially deep learning, which is famous for image analysis, facial recognition, and speech recognition, has remained relatively elusive to the biosensor community. Herein, how ML can be beneficial to biosensors is systematically discussed. The advantages and drawbacks of most popular ML algorithms are summarized on the basis of sensing data analysis. Specially, deep learning methods such as convolutional neural network (CNN) and recurrent neural network (RNN) are emphasized. Diverse ML-assisted electrochemical biosensors, wearable electronics, SERS and other spectra-based biosensors, fluorescence biosensors and colorimetric biosensors are comprehensively discussed. Furthermore, biosensor networks and multibiosensor data fusion are introduced. This review will nicely bridge ML with biosensors, and greatly expand chemometrics for detection, analysis, and diagnosis.
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Affiliation(s)
- Feiyun Cui
- Department of Chemical Engineering, Worcester Polytechnic Institute, 100 Institute Road, Worcester, Massachusetts 01609, United States
| | - Yun Yue
- Department of Electrical & Computer Engineering, Worcester Polytechnic Institute, Worcester, Massachusetts 01609, United States
| | - Yi Zhang
- Department of Biomedical Engineering, University of Connecticut, Storrs, Connecticut 06269, United States
| | - Ziming Zhang
- Department of Electrical & Computer Engineering, Worcester Polytechnic Institute, Worcester, Massachusetts 01609, United States
| | - H. Susan Zhou
- Department of Chemical Engineering, Worcester Polytechnic Institute, 100 Institute Road, Worcester, Massachusetts 01609, United States
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21
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Sidhu RK, Cavallaro ND, Pola CC, Danyluk MD, McLamore ES, Gomes CL. Planar Interdigitated Aptasensor for Flow-Through Detection of Listeria spp. in Hydroponic Lettuce Growth Media. SENSORS (BASEL, SWITZERLAND) 2020; 20:E5773. [PMID: 33053744 PMCID: PMC7600482 DOI: 10.3390/s20205773] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Revised: 10/09/2020] [Accepted: 10/10/2020] [Indexed: 02/07/2023]
Abstract
Irrigation water is a primary source of fresh produce contamination by bacteria during the preharvest, particularly in hydroponic systems where the control of pests and pathogens is a major challenge. In this work, we demonstrate the development of a Listeria biosensor using platinum interdigitated microelectrodes (Pt-IME). The sensor is incorporated into a particle/sediment trap for the real-time analysis of irrigation water in a hydroponic lettuce system. We demonstrate the application of this system using a smartphone-based potentiostat for rapid on-site analysis of water quality. A detailed characterization of the electrochemical behavior was conducted in the presence/absence of DNA and Listeria spp., which was followed by calibration in various solutions with and without flow. In flow conditions (100 mL samples), the aptasensor had a sensitivity of 3.37 ± 0.21 k log-CFU-1 mL, and the LOD was 48 ± 12 CFU mL-1 with a linear range of 102 to 104 CFU mL-1. In stagnant solution with no flow, the aptasensor performance was significantly improved in buffer, vegetable broth, and hydroponic media. Sensor hysteresis ranged from 2 to 16% after rinsing in a strong basic solution (direct reuse) and was insignificant after removing the aptamer via washing in Piranha solution (reuse after adsorption with fresh aptamer). This is the first demonstration of an aptasensor used to monitor microbial water quality for hydroponic lettuce in real time using a smartphone-based acquisition system for volumes that conform with the regulatory standards. The aptasensor demonstrated a recovery of 90% and may be reused a limited number of times with minor washing steps.
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Affiliation(s)
- Raminderdeep K. Sidhu
- Department of Biological & Agricultural Engineering, Texas A&M University, College Station, TX 77843, USA;
| | - Nicholas D. Cavallaro
- Agricultural & Biological Engineering, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL 32611, USA;
| | - Cicero C. Pola
- Department of Mechanical Engineering, Iowa State University, Ames, IA 50011, USA;
| | - Michelle D. Danyluk
- Food Science and Human Nutrition, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL 32611, USA;
| | - Eric S. McLamore
- Agricultural & Biological Engineering, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL 32611, USA;
| | - Carmen L. Gomes
- Department of Mechanical Engineering, Iowa State University, Ames, IA 50011, USA;
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22
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Soares RRA, Hjort RG, Pola CC, Parate K, Reis EL, Soares NFF, McLamore ES, Claussen JC, Gomes CL. Laser-Induced Graphene Electrochemical Immunosensors for Rapid and Label-Free Monitoring of Salmonella enterica in Chicken Broth. ACS Sens 2020; 5:1900-1911. [PMID: 32348124 DOI: 10.1021/acssensors.9b02345] [Citation(s) in RCA: 104] [Impact Index Per Article: 26.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Food-borne illnesses are a growing concern for the food industry and consumers, with millions of cases reported every year. Consequently, there is a critical need to develop rapid, sensitive, and inexpensive techniques for pathogen detection in order to mitigate this problem. However, current pathogen detection strategies mainly include time-consuming laboratory methods and highly trained personnel. Electrochemical in-field biosensors offer a rapid, low-cost alternative to laboratory techniques, but the electrodes used in these biosensors require expensive nanomaterials to increase their sensitivity, such as noble metals (e.g., platinum, gold) or carbon nanomaterials (e.g., carbon nanotubes, or graphene). Herein, we report the fabrication of a highly sensitive and label-free laser-induced graphene (LIG) electrode that is subsequently functionalized with antibodies to electrochemically quantify the food-borne pathogen Salmonella enterica serovar Typhimurium. The LIG electrodes were produced by laser induction on the polyimide film in ambient conditions and, hence, circumvent the need for high-temperature, vacuum environment, and metal seed catalysts commonly associated with graphene-based electrodes fabricated via chemical vapor deposition processes. After functionalization with Salmonella antibodies, the LIG biosensors were able to detect live Salmonella in chicken broth across a wide linear range (25 to 105 CFU mL-1) and with a low detection limit (13 ± 7 CFU mL-1; n = 3, mean ± standard deviation). These results were acquired with an average response time of 22 min without the need for sample preconcentration or redox labeling techniques. Moreover, these LIG immunosensors displayed high selectivity as demonstrated by nonsignificant response to other bacteria strains. These results demonstrate how LIG-based electrodes can be used for electrochemical immunosensing in general and, more specifically, could be used as a viable option for rapid and low-cost pathogen detection in food processing facilities before contaminated foods reach the consumer.
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Affiliation(s)
- Raquel R. A. Soares
- Department of Mechanical Engineering, Iowa State University, Ames 50011, Iowa, United States
- Department of Food Technology, Federal University of Viçosa, Viçosa 36570-900, Brazil
| | - Robert G. Hjort
- Department of Mechanical Engineering, Iowa State University, Ames 50011, Iowa, United States
| | - Cicero C. Pola
- Department of Mechanical Engineering, Iowa State University, Ames 50011, Iowa, United States
| | - Kshama Parate
- Department of Mechanical Engineering, Iowa State University, Ames 50011, Iowa, United States
| | - Efraim L. Reis
- Department of Chemistry, Federal University of Vicosa, Viçosa 36570-900, Brazil
| | - Nilda F. F. Soares
- Department of Food Technology, Federal University of Viçosa, Viçosa 36570-900, Brazil
| | - Eric S. McLamore
- Agricultural & Biological Engineering, University of Florida, Gainesville 32611, Florida, United States
| | - Jonathan C. Claussen
- Department of Mechanical Engineering, Iowa State University, Ames 50011, Iowa, United States
| | - Carmen L. Gomes
- Department of Mechanical Engineering, Iowa State University, Ames 50011, Iowa, United States
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23
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McLamore ES, Palit Austin Datta S, Morgan V, Cavallaro N, Kiker G, Jenkins DM, Rong Y, Gomes C, Claussen J, Vanegas D, Alocilja EC. SNAPS: Sensor Analytics Point Solutions for Detection and Decision Support Systems. SENSORS 2019; 19:s19224935. [PMID: 31766116 PMCID: PMC6891700 DOI: 10.3390/s19224935] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/03/2019] [Revised: 10/23/2019] [Accepted: 10/28/2019] [Indexed: 12/16/2022]
Abstract
In this review, we discuss the role of sensor analytics point solutions (SNAPS), a reduced complexity machine-assisted decision support tool. We summarize the approaches used for mobile phone-based chemical/biological sensors, including general hardware and software requirements for signal transduction and acquisition. We introduce SNAPS, part of a platform approach to converge sensor data and analytics. The platform is designed to consist of a portfolio of modular tools which may lend itself to dynamic composability by enabling context-specific selection of relevant units, resulting in case-based working modules. SNAPS is an element of this platform where data analytics, statistical characterization and algorithms may be delivered to the data either via embedded systems in devices, or sourced, in near real-time, from mist, fog or cloud computing resources. Convergence of the physical systems with the cyber components paves the path for SNAPS to progress to higher levels of artificial reasoning tools (ART) and emerge as data-informed decision support, as a service for general societal needs. Proof of concept examples of SNAPS are demonstrated both for quantitative data and qualitative data, each operated using a mobile device (smartphone or tablet) for data acquisition and analytics. We discuss the challenges and opportunities for SNAPS, centered around the value to users/stakeholders and the key performance indicators users may find helpful, for these types of machine-assisted tools.
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Affiliation(s)
- Eric S. McLamore
- Agricultural and Biological Engineering, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL 32611, USA or (V.M.); (N.C.); (G.K.); (Y.R.)
- Correspondence: ; Tel.: +1-(352)294-6703
| | - Shoumen Palit Austin Datta
- Agricultural and Biological Engineering, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL 32611, USA or (V.M.); (N.C.); (G.K.); (Y.R.)
- MIT Auto-ID Labs, Department of Mechanical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
- MDPnP Labs, Biomedical Engineering Program, Department of Anesthesiology, Massachusetts General Hospital, Harvard Medical School, 65 Landsdowne Street, Cambridge, MA 02139, USA
| | - Victoria Morgan
- Agricultural and Biological Engineering, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL 32611, USA or (V.M.); (N.C.); (G.K.); (Y.R.)
| | - Nicholas Cavallaro
- Agricultural and Biological Engineering, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL 32611, USA or (V.M.); (N.C.); (G.K.); (Y.R.)
| | - Greg Kiker
- Agricultural and Biological Engineering, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL 32611, USA or (V.M.); (N.C.); (G.K.); (Y.R.)
| | - Daniel M. Jenkins
- Molecular Biosciences and Bioengineering, University of Hawaii Manoa, Honolulu, HI 96822, USA;
| | - Yue Rong
- Agricultural and Biological Engineering, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL 32611, USA or (V.M.); (N.C.); (G.K.); (Y.R.)
| | - Carmen Gomes
- Mechanical Engineering, Iowa State University, Ames, IA 50011, USA;
| | - Jonathan Claussen
- Mechanical Engineering Department, Iowa State University, Ames, IA 50011, USA;
- Ames Laboratory, Ames, IA 50011, USA
| | - Diana Vanegas
- Environmental Engineering and Earth Sciences, Clemson University, Clemson, SC 29634, USA;
| | - Evangelyn C. Alocilja
- Global Alliance for Rapid Diagnostics, Michigan State University, East Lansing, MI 48824, USA;
- Nano-Biosensors Lab, Michigan State University, East Lansing, MI 48824, USA
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24
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Feng W, Zhang Y, Rong G, Feng Y. Finite Adaptability in Data-Driven Robust Optimization for Production Scheduling: A Case Study of the Ethylene Plant. Ind Eng Chem Res 2019. [DOI: 10.1021/acs.iecr.8b05119] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Wei Feng
- State Key Laboratory of Industrial Control Technology, College of Control Science and Engineering, Zhejiang University, Hangzhou 310027, China
| | - Yi Zhang
- State Key Laboratory of Industrial Control Technology, College of Control Science and Engineering, Zhejiang University, Hangzhou 310027, China
| | - Gang Rong
- State Key Laboratory of Industrial Control Technology, College of Control Science and Engineering, Zhejiang University, Hangzhou 310027, China
| | - Yiping Feng
- State Key Laboratory of Industrial Control Technology, College of Control Science and Engineering, Zhejiang University, Hangzhou 310027, China
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25
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Vanegas DC, Patiño L, Mendez C, Oliveira DAD, Torres AM, Gomes CL, McLamore ES. Laser Scribed Graphene Biosensor for Detection of Biogenic Amines in Food Samples Using Locally Sourced Materials. BIOSENSORS 2018; 8:E42. [PMID: 29695046 PMCID: PMC6023090 DOI: 10.3390/bios8020042] [Citation(s) in RCA: 71] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/06/2018] [Revised: 04/11/2018] [Accepted: 04/19/2018] [Indexed: 11/16/2022]
Abstract
In foods, high levels of biogenic amines (BA) are the result of microbial metabolism that could be affected by temperatures and storage conditions. Thus, the level of BA is commonly used as an indicator of food safety and quality. This manuscript outlines the development of laser scribed graphene electrodes, with locally sourced materials, for reagent-free food safety biosensing. To fabricate the biosensors, the graphene surface was functionalized with copper microparticles and diamine oxidase, purchased from a local supermarket; and then compared to biosensors fabricated with analytical grade materials. The amperometric biosensor exhibits good electrochemical performance, with an average histamine sensitivity of 23.3 µA/mM, a lower detection limit of 11.6 µM, and a response time of 7.3 s, showing similar performance to biosensors constructed from analytical grade materials. We demonstrated the application of the biosensor by testing total BA concentration in fish paste samples subjected to fermentation with lactic acid bacteria. Biogenic amines concentrations prior to lactic acid fermentation were below the detection limit of the biosensor, while concentration after fermentation was 19.24 ± 8.21 mg histamine/kg, confirming that the sensor was selective in a complex food matrix. The low-cost, rapid, and accurate device is a promising tool for biogenic amine estimation in food samples, particularly in situations where standard laboratory techniques are unavailable, or are cost prohibitive. This biosensor can be used for screening food samples, potentially limiting food waste, while reducing chances of foodborne outbreaks.
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Affiliation(s)
- Diana C Vanegas
- Department of Food Engineering, Universidad del Valle, Cali 760032, Colombia.
| | - Laksmi Patiño
- Department of Food Engineering, Universidad del Valle, Cali 760032, Colombia.
| | - Connie Mendez
- Department of Food Engineering, Universidad del Valle, Cali 760032, Colombia.
| | - Daniela Alves de Oliveira
- Department of Biological and Agricultural Engineering, Texas A&M University, College Station, TX 77843, USA.
| | - Alba M Torres
- Department of Biology, Universidad del Valle, Cali 760032, Colombia.
| | - Carmen L Gomes
- Department of Mechanical Engineering, Iowa State University, Ames, IA 50011, USA.
| | - Eric S McLamore
- Department of Agricultural and Biological Engineering, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL 32611, USA.
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