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Hu Y, Tahara K, De Feyter S. Molecular islands at the liquid-solid interface. Chem Commun (Camb) 2024; 60:8852-8855. [PMID: 39081056 DOI: 10.1039/d4cc02402h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/16/2024]
Abstract
Molecular islands of various shapes and sizes composed of a few tens of molecules only are formed at the liquid-solid interface, at room temperature, by an alkoxylated dehydrobenzo[12]annulene (DBA) derivative. Molecules are packed into hexagons. Scanning tunneling microscopy reveals the variety in molecular island structures and their stability. For molecular islands up to 7 hexagonal pores, all 244 possible structures are simulated and compared with experimental observations. Force field calculations give insights into the relative stability of the molecular islands and the factors contributing to it.
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Affiliation(s)
- Yi Hu
- Division of Molecular Imaging and Photonics, Department of Chemistry, KU Leuven, 3001 Leuven, Belgium.
- Institute for Advanced Study, Shenzhen University, Shenzhen 518060, China
| | - Kazukuni Tahara
- Department of Applied Chemistry, School of Science and Technology, Meiji University, Kawasaki, Kanagawa 214-8571, Japan.
| | - Steven De Feyter
- Division of Molecular Imaging and Photonics, Department of Chemistry, KU Leuven, 3001 Leuven, Belgium.
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2
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Tessari Z, Rinkovec T, De Feyter S. Chiral induction in substrate-supported self-assembled molecular networks under nanoconfinement conditions. NANOSCALE ADVANCES 2024; 6:892-901. [PMID: 38298576 PMCID: PMC10825934 DOI: 10.1039/d3na00894k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/17/2023] [Accepted: 01/04/2024] [Indexed: 02/02/2024]
Abstract
Self-assembly on surfaces often produces chiral networks, even when starting from achiral building blocks. However, when achiral molecules are used to produce chiral networks, two possible enantiomorphs are created with equal probability, rendering therefore the overall surface achiral. This outcome can be changed by finding a way to promote the preferential formation of one of the two enantiomorphs. In this regard, the creation of nanoconfined space, which has been called molecular corral, having a chosen orientation with respect to the substrate symmetry has been demonstrated to be a valid way to obtain the preferential self-assembly of a network having a determined chirality. In this study we aim to further expand the understanding of the principles of such mechanism, in particular by looking at unexplored parameters that could have a role in the production of the observed bias. In this way a deeper comprehension of the mechanisms at the base of the chiral self-assembly could be obtained.
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Affiliation(s)
- Zeno Tessari
- Division of Molecular Imaging and Photonics, Department of Chemistry KU Leuven, Celestijnenlaan 200 F 3001 Leuven Belgium
| | - Tamara Rinkovec
- Division of Molecular Imaging and Photonics, Department of Chemistry KU Leuven, Celestijnenlaan 200 F 3001 Leuven Belgium
| | - Steven De Feyter
- Division of Molecular Imaging and Photonics, Department of Chemistry KU Leuven, Celestijnenlaan 200 F 3001 Leuven Belgium
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Applegate L, Samarasiri VS, Leddy J, Forbes TZ. Impacts of Surface Adsorption on Water Uptake within a Metal Organic Nanotube Material. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2022; 38:14025-14035. [PMID: 36343277 PMCID: PMC9686127 DOI: 10.1021/acs.langmuir.2c01124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/02/2022] [Revised: 10/25/2022] [Indexed: 06/16/2023]
Abstract
The confinement-dependent properties of solvents, particularly water, within nanoporous spaces impart unique physical and chemical behavior compared to those of the bulk. This has previously been demonstrated for a U(VI)-based metal organic nanotube that displays ice-like arrays of water molecules within the 1-D pore space and complete selectivity to H2O over all other solvents and isotopologues. Based upon our previous work on D2O and HTO adsorption processes, we suggested that the water uptake was controlled by a two-step process: (1) surface adsorption via hydrogen bonding to hydrophilic amine and carboxylic groups and (2) diffusion of the water into the hydrophobic 1-D nanochannels. The current study seeks to evaluate this hypothesis and expand our existing kinetic model for the water diffusion step to account for the initial surface adsorption process. Vapor sorption experiments, paired with thermogravimetric and Fourier-transform infrared analyses, yielded uptake data that were fit using a Langmuir model for the surface-adsorption step of the mechanism. The water adsorption curve was designated a type IV Brunauer-Emmett-Teller isotherm, which indicated that our original hypothesis was correct. Additional work with binary solvent systems enabled us to evaluate the uptake in a range of conditions and determine that the uptake is not controlled by the vapor pressure but is instead completely dependent on the relative humidity of the system.
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Yu LH, Cai ZF, Verstraete L, Xia Y, Fang Y, Cuccia L, Ivasenko O, De Feyter S. Defect-engineered surfaces to investigate the formation of self-assembled molecular networks. Chem Sci 2022; 13:13212-13219. [PMID: 36425498 PMCID: PMC9667956 DOI: 10.1039/d2sc04599k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/17/2022] [Accepted: 10/24/2022] [Indexed: 08/28/2024] Open
Abstract
Herein we report the impact of covalent modification (grafting), inducing lateral nanoconfinement conditions, on the self-assembly of a quinonoid zwitterion derivative into self-assembled molecular networks at the liquid/solid interface. At low concentrations where the compound does not show self-assembly behaviour on bare highly oriented pyrolytic graphite (HOPG), close-packed self-assembled structures are visualized by scanning tunneling microscopy on covalently modified HOPG. The size of the self-assembled domains decreases with increasing the density of grafted molecules, i.e. the molecules covalently bound to the surface. The dynamics of domains are captured with molecular resolution, revealing not only time-dependent growth and shrinkage processes but also the orientation conversion of assembled domains. Grafted pins play a key role in initiating the formation of on-surface molecular self-assembly and their stabilization, providing an elegant route to study various aspects of nucleation and growth processes of self-assembled molecular networks.
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Affiliation(s)
- Li-Hua Yu
- Department of Chemistry, Division of Molecular Imaging and Photonics, KU Leuven Celestijnenlaan 200F B-3001 Leuven Belgium
| | - Zhen-Feng Cai
- Department of Chemistry and Applied Biosciences, ETH Zurich Zurich CH-8093 Switzerland
| | - Lander Verstraete
- Department of Chemistry, Division of Molecular Imaging and Photonics, KU Leuven Celestijnenlaan 200F B-3001 Leuven Belgium
- imec Kapeldreef 75 3001 Leuven Belgium
| | - Yuanzhi Xia
- Department of Chemistry, Division of Molecular Imaging and Photonics, KU Leuven Celestijnenlaan 200F B-3001 Leuven Belgium
| | - Yuan Fang
- Jiangsu Key Laboratory for Carbon-Based Functional Materials & Devices, Soochow University Suzhou 215123 PR China
- Jiangsu Key Laboratory of Advanced Negative Carbon Technologies, Soochow University Suzhou 215123 Jiangsu PR China
| | - Louis Cuccia
- Department of Chemistry and Biochemistry, Concordia University 7141 Sherbrooke St. W. Montreal Québec Canada
| | - Oleksandr Ivasenko
- Department of Chemistry, Division of Molecular Imaging and Photonics, KU Leuven Celestijnenlaan 200F B-3001 Leuven Belgium
- Institute of Functional Nano & Soft Materials (FUNSOM), Joint International Research Laboratory of Carbon-Based Functional Materials and Devices, Soochow University Suzhou 215123 Jiangsu PR China
- Jiangsu Key Laboratory for Carbon-Based Functional Materials & Devices, Soochow University Suzhou 215123 PR China
| | - Steven De Feyter
- Department of Chemistry, Division of Molecular Imaging and Photonics, KU Leuven Celestijnenlaan 200F B-3001 Leuven Belgium
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5
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Verstraete L, De Feyter S. 2D Self-assembled molecular networks and on-surface reactivity under nanoscale lateral confinement. Chem Soc Rev 2021; 50:5884-5897. [PMID: 34027935 DOI: 10.1039/d0cs01338b] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Supramolecular self-assembly at surfaces provides a pathway for building chemically customized interfaces. Over the last three decades, research on the role of key parameters such as temperature, solute concentration, and molecular design has enabled a steady increase in the complexity of self-assembled molecular networks (SAMNs) that can thus be created. However, the structure and quality of SAMNs is often determined during the early stages of nucleation and growth. To study and influence self-assembly processes at this deterministic length scale, spatial confinement of molecular adsorbates to well-defined surface patterns with nanoscale lateral dimensions offers exciting possibilities. The aim of this tutorial review is to give an overview of the various ways in which confinement impacts SAMN formation, and how we can use that knowledge to direct assemblies towards desired structures. The possibility to exploit confinement for improved control over on-surface reactions is also contemplated.
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Affiliation(s)
- Lander Verstraete
- Department of Chemistry, Division of Molecular Imaging and Photonics, KU Leuven-University of Leuven, Celestijnenlaan 200F, B-3001 Leuven, Belgium.
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6
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Nieckarz D, Szabelski P. Theoretical Modeling of the Surface-Guided Self-Assembly of Functional Molecules. Chemphyschem 2020; 21:643-650. [PMID: 31894625 DOI: 10.1002/cphc.201901105] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2019] [Revised: 12/20/2019] [Indexed: 11/06/2022]
Abstract
Directing the self-assembly of organic building blocks with 2D templates has been a promising method to create molecular superstructures having unique physicochemical properties. In this work the on-surface self-assembly of simple ditopic functional molecules confined inside periodic nanotemplates was modeled by means of the lattice Monte Carlo simulation method. Two types of confinement, that is honeycomb porous networks and parallel grooves of controlled diameter and width were used in the calculations. Additionally, the effect of (pro)chirality of the adsorbing molecules on the outcome of the templated self-assembly was examined. To that end, enantiopure and racemic assemblies were studied and the resulting structures were identified and classified. The obtained findings demonstrated that suitable tuning of the structural parameters of the templates enables directing the self-assembly towards linear and cyclic aggregates with controlled size. Moreover, chiral resolution of the molecular conformers using honeycomb networks with adjusted pore size was found possible. Our theoretical predictions can be helpful in designing structured surfaces to direct self-assembly and polymerization of organic functional building blocks.
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Affiliation(s)
- Damian Nieckarz
- Department of Theoretical Chemistry, Institute of Chemical Sciences, Faculty of Chemistry, MariaCurie-Skłodowska University in Lublin, Pl. M.C. Skłodowskiej 3, 20-031, Lublin, Poland
| | - Paweł Szabelski
- Department of Theoretical Chemistry, Institute of Chemical Sciences, Faculty of Chemistry, MariaCurie-Skłodowska University in Lublin, Pl. M.C. Skłodowskiej 3, 20-031, Lublin, Poland
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7
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Seibel J, Amabilino DB, De Feyter S. Preferred Formation of Minority Concomitant Polymorphs in 2D Self‐Assembly under Lateral Nanoconfinement. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201908552] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Johannes Seibel
- Department of Chemistry Division of Molecular Imaging and Photonics KU Leuven—University of Leuven Celestijnenlaan 200F 3001 Leuven Belgium
| | - David B. Amabilino
- School of Chemistry & The GSK Carbon Neutral Laboratories for Sustainable Chemistry The University of Nottingham Triumph Road Nottingham NG7 2TU UK
| | - Steven De Feyter
- Department of Chemistry Division of Molecular Imaging and Photonics KU Leuven—University of Leuven Celestijnenlaan 200F 3001 Leuven Belgium
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8
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Keller TJ, Bahr J, Gratzfeld K, Schönfelder N, Majewski MA, Stępień M, Höger S, Jester SS. Nanopatterns of arylene-alkynylene squares on graphite: self-sorting and intercalation. Beilstein J Org Chem 2019; 15:1848-1855. [PMID: 31467606 PMCID: PMC6693369 DOI: 10.3762/bjoc.15.180] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2019] [Accepted: 07/16/2019] [Indexed: 11/23/2022] Open
Abstract
Supramolecular nanopatterns of arylene–alkynylene squares with side chains of different lengths are investigated by scanning tunneling microscopy at the solid/liquid interface of highly oriented pyrolytic graphite and 1,2,4-trichlorobenzene. Self-sorting leads to the intermolecular interdigitation of alkoxy side chains of identical length. Voids inside and between the squares are occupied by intercalated solvent molecules, which numbers depend on the sizes and shapes of the nanopores. In addition, planar and non-planar coronoid polycyclic aromatic hydrocarbons (i.e., butyloxy-substituted kekulene and octulene derivatives) are found to be able to intercalate into the intramolecular nanopores.
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Affiliation(s)
- Tristan J Keller
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Str. 1, 53121 Bonn, Germany
| | - Joshua Bahr
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Str. 1, 53121 Bonn, Germany
| | - Kristin Gratzfeld
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Str. 1, 53121 Bonn, Germany
| | - Nina Schönfelder
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Str. 1, 53121 Bonn, Germany
| | - Marcin A Majewski
- Wydział Chemii, Uniwersytet Wrocławski, ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Marcin Stępień
- Wydział Chemii, Uniwersytet Wrocławski, ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Sigurd Höger
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Str. 1, 53121 Bonn, Germany
| | - Stefan-S Jester
- Kekulé-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Str. 1, 53121 Bonn, Germany
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9
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Seibel J, Amabilino DB, De Feyter S. Preferred Formation of Minority Concomitant Polymorphs in 2D Self‐Assembly under Lateral Nanoconfinement. Angew Chem Int Ed Engl 2019; 58:12964-12968. [DOI: 10.1002/anie.201908552] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2019] [Indexed: 11/07/2022]
Affiliation(s)
- Johannes Seibel
- Department of Chemistry Division of Molecular Imaging and Photonics KU Leuven—University of Leuven Celestijnenlaan 200F 3001 Leuven Belgium
| | - David B. Amabilino
- School of Chemistry & The GSK Carbon Neutral Laboratories for Sustainable Chemistry The University of Nottingham Triumph Road Nottingham NG7 2TU UK
| | - Steven De Feyter
- Department of Chemistry Division of Molecular Imaging and Photonics KU Leuven—University of Leuven Celestijnenlaan 200F 3001 Leuven Belgium
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10
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Miller QRS, Kaszuba JP, Schaef HT, Bowden ME, McGrail BP, Rosso KM. Anomalously low activation energy of nanoconfined MgCO3 precipitation. Chem Commun (Camb) 2019; 55:6835-6837. [DOI: 10.1039/c9cc01337g] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Experimental study of nanoconfined MgCO3 nucleation and growth processes reveals elevated kinetics due to less strongly hydrated Mg2+.
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Affiliation(s)
- Quin R. S. Miller
- Department of Geology and Geophysics
- University of Wyoming
- Laramie
- USA
- Physical and Computational Sciences Directorate
| | - John P. Kaszuba
- Department of Geology and Geophysics
- University of Wyoming
- Laramie
- USA
- School of Energy Resources
| | - Herbert T. Schaef
- Physical and Computational Sciences Directorate
- Pacific Northwest National Laboratory
- Richland
- USA
| | - Mark E. Bowden
- William R. Wiley Environmental Molecular Sciences Laboratory
- Pacific Northwest National Laboratory
- Richland
- USA
| | - B. Peter McGrail
- Energy and Environment Directorate
- Pacific Northwest National Laboratory
- Richland
- USA
| | - Kevin M. Rosso
- Physical and Computational Sciences Directorate
- Pacific Northwest National Laboratory
- Richland
- USA
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