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Yashmin F, Sharma R, Mazumder LJ, Sharma PK. Noble gas dative bonding with coinage metal carbene complexes: A theoretical study. J Comput Chem 2024; 45:536-545. [PMID: 37994117 DOI: 10.1002/jcc.27253] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Revised: 09/28/2023] [Accepted: 10/28/2023] [Indexed: 11/24/2023]
Abstract
The structure and stability of noble gas (Ng) bound [NHCM]+ complexes (M = Cu, Ag, and Au) were investigated using Quantum chemical calculations. Dissociation energies, enthalpy, and free energy changes were computed to comprehend the stability of these Ng-bonded complexes. The nature of interactions associated to the bonding between metal and noble gas atoms was studied through the computation of electron density-based descriptors. Detailed electronic structure study revealed electron donation from the noble gas atoms towards the metal center, resulting in the formation of dative bonds.
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Affiliation(s)
- Farnaz Yashmin
- Department of Chemistry, Cotton University, Guwahati, India
| | - Rohan Sharma
- Department of Chemistry, Cotton University, Guwahati, India
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2
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Atsumi M, Pyykkö P. 10-Valence-Electron C≡O and the 14-VE C≡Pt: Two Triple-Bonded Isoelectronic Families Differing by a dδ 4 Ring. Inorg Chem 2023; 62:21083-21090. [PMID: 38050990 PMCID: PMC10751794 DOI: 10.1021/acs.inorgchem.3c02889] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Revised: 10/27/2023] [Accepted: 10/31/2023] [Indexed: 12/07/2023]
Abstract
10-VE A≡A' Diatomics, such as N≡N, C≡O, etc., have a strong σ2π4 triple bond plus a lone pair at each end. In our studies on 14-VE A≡B systems, such as C≡Pt, we find a similar bonding system plus a (5dδ)4 ring. Here, the A atom belongs to groups 13-17 and the B atom to groups 7-11. Also the BB' combinations, triatomics, such as PtCO or DsCO or uranyl, and longer chains, such as AuCN and [NC-Au-CN]-, are discussed. The δ ring directly contributes to nuclear quadrupole coupling constants, and DFT calculations using the BH and H or mPW1K functionals reproduce the experimental trends of the NQCC.
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Affiliation(s)
- Michiko Atsumi
- Hylleraas
Centre for Quantum Molecular Sciences, Department of Chemistry, University of Oslo, Norway. Postboks 1033, Oslo 0315, Norway
| | - Pekka Pyykkö
- Department
of Chemistry, Faculty of Science, University
of Helsinki, P.O.Box 55 (A. I. Virtasen aukio 1), Helsinki 00014, Finland
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3
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Schulz A, Surkau J. Main group cyanides: from hydrogen cyanide to cyanido-complexes. REV INORG CHEM 2022. [DOI: 10.1515/revic-2021-0044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
Homoleptic cyanide compounds exist of almost all main group elements. While the alkali metals and alkaline earth metals form cyanide salts, the cyanides of the lighter main group elements occur mainly as covalent compounds. This review gives an overview of the status quo of main group element cyanides and cyanido complexes. Information about syntheses are included as well as applications, special substance properties, bond lengths, spectroscopic characteristics and computations. Cyanide chemistry is presented mainly from the field of inorganic chemistry, but aspects of chemical biology and astrophysics are also discussed in relation to cyano compounds.
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Affiliation(s)
- Axel Schulz
- Chemie , Universität Rostock , Albert-Einstein-Straße 3a, 18059 Rostock , Mecklenburg-Vorpommern , Germany
| | - Jonas Surkau
- Chemie , Universität Rostock , Albert-Einstein-Straße 3a, 18059 Rostock , Mecklenburg-Vorpommern , Germany
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4
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Baradyn M, Ratkiewicz A. On-The-Fly Kinetics of the Hydrogen Abstraction by Hydroperoxyl Radical: An Application of the Reaction Class Transition State Theory. Front Chem 2022; 9:806873. [PMID: 35174142 PMCID: PMC8841336 DOI: 10.3389/fchem.2021.806873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2021] [Accepted: 12/22/2021] [Indexed: 11/23/2022] Open
Abstract
A Reaction Class Transition State Theory (RC-TST) is applied to calculate thermal rate constants for hydrogen abstraction by OOH radical from alkanes in the temperature range of 300–2500 K. The rate constants for the reference reaction C2H6 + ∙OOH → ∙C2H5 + H2O2, is obtained with the Canonical Variational Transition State Theory (CVT) augmented with the Small Curvature Tunneling (SCT) correction. The necessary parameters were obtained from M06-2X/aug-cc-pVTZ data for a training set of 24 reactions. Depending on the approximation employed, only the reaction energy or no additional parameters are needed to predict the RC-TST rates for other class representatives. Although each of the reactions can in principle be investigated at higher levels of theory, the approach provides a nearly equally reliable rate constant at a fraction of the cost needed for larger and higher level calculations. The systematic error is smaller than 50% in comparison with high level computations. Satisfactory agreement with literature data, augmented by the lack of necessity of tedious and time consuming transition state calculations, facilitated the seamless application of the proposed methodology to the Automated Reaction Mechanism Generators (ARMGs) programs.
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Jana G, Pal R, Chattaraj PK. XNgNSi (X = HCC, F; Ng = Kr, Xe, Rn): A New Class of Metastable Insertion Compounds Containing Ng-C/F and Ng-N Bonds and Possible Isomerization therein. J Phys Chem A 2021; 125:10514-10523. [PMID: 34747606 DOI: 10.1021/acs.jpca.1c07677] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Recently, astronomically important silaisocyanoacetylene (HCCNSi) possessing a large dipole moment has been detected for the first time with the help of crossed molecular beam experiments. Quantum chemical computations at higher levels of theory have also been performed to characterize the transient species. In this study, we have analyzed the equilibrium geometry, stability, reactivity, and energetics as well as the nature of bonding in the noble gas (Ng) inserted HCCNSi compound. We have also considered its F analogue to understand the influence of the most electronegative atom in the compound. Metastable behavior of the XNgNSi compounds (X = HCC, F; Ng = Kr-Rn) is examined by calculating thermochemical parameters like free energy change (ΔG) and zero-point-energy-corrected dissociation energy (D0) at 298 K for all possible two-body (2B) and three-body (3B) (both neutral as well as ionic) dissociation channels using coupled-cluster theory [CCSD(T)] in addition to density functional theory (DFT) as well as second order Møller-Plesset perturbation theory (MP2). The set of predicted compounds is found to be endergonic in nature, having high positive free energy change suggesting the thermochemical stability of the compounds except for the 2B Ng-release paths. Though thermodynamically feasible, they are kinetically protected with very high activation free energy barriers. Interestingly, the release of Ng from the parent moiety XNgNSi produces the XSiN isomer, by 180° flipping of the NSi moiety. This can also be seen in the dynamical simulation carried out with the help of atom-centered density matrix propagation (ADMP) technique at 2000K for 1 ps. The bonding in Ng-C, Ng-F, and Ng-N bonds of the studied compounds is analyzed and described with the aid of natural bond orbital (NBO), topological parameters computed using atoms-in-molecules theory (AIM), energy decomposition analysis (EDA), and adaptive natural density partitioning (AdNDP) methods. The natural charge distribution on the constituent atoms suggests that the compounds can be partitioned into both ways of representations, viz., neutral radical as well as ionic fragments. Lastly, the reactivity of the compounds is scrutinized using certain reactivity descriptors calculated within the domain of conceptual density functional theory (CDFT).
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Affiliation(s)
- Gourhari Jana
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai-400076, India
| | - Ranita Pal
- Advanced Technology Development Centre, Indian Institute of Technology Kharagpur, Kharagpur-721302, India
| | - Pratim Kumar Chattaraj
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai-400076, India.,Department of Chemistry, Indian Institute of Technology Kharagpur, Kharagpur-721302, India
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Liu YT, Li AY. Long-bonding and bonding nature in noble gas insertion compounds MNgBY of transition metal-boron bond. J Mol Model 2021; 27:360. [PMID: 34817695 DOI: 10.1007/s00894-021-04970-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2021] [Accepted: 10/26/2021] [Indexed: 11/27/2022]
Abstract
The nature of inert gas bonding has always been an important topic. The bonds of noble gases cover the entire range of chemical bonds, from the weakest van der Waals forces, to non-covalent interactions, and to covalent bonds. Two types of methods were used to investigate the properties of chemical bonds in the inert gas inserted compound MNgBY with the transition metal M = Cu/Ag/Au and substituents Y = O/S/NH, one based on orbital analysis and the other based on electron density analysis. The NBO/NRT analysis shows that in these compounds there exists long-bonding striding the noble gas between the transitional metal and boron, similar to the noble gas insertion compounds HNgX of hydrohalide, and so a three-center four-electron bond exists among the M-Ng-B part. The electron density analyses show that the M-Ng bond between the metal Cu/Ag/Au and noble gas and the Ng-B bond in the Cu/Ag compounds are partial covalent but the Ng-B bond in Au compounds is a typical covalent bond. The large relativistic effects of Au cause the bonds in Au compounds shorter and stronger than the bonds in Ag/Cu compounds. The properties of the M-Ng and Ng-B bonds are not affected by substituents Y, but the bond lengths are sensitive to substituents.
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Affiliation(s)
- Yan Tao Liu
- School of Chemistry and Chemical Engineering, Southwest University, Chongqing, 400715, People's Republic of China
| | - An Yong Li
- School of Chemistry and Chemical Engineering, Southwest University, Chongqing, 400715, People's Republic of China.
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7
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Ghara M, Chattaraj PK. Noble Gas Binding Ability of an Au(I) Cation Stabilized by a Frustrated Lewis Pair: A DFT Study. Front Chem 2020; 8:616. [PMID: 32850643 PMCID: PMC7396548 DOI: 10.3389/fchem.2020.00616] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2020] [Accepted: 06/11/2020] [Indexed: 11/23/2022] Open
Abstract
The noble gas (Ng) binding ability of a monocationic [(FLP)Au]+ species has been investigated by a computational study. Here, the monocationic [(FLP)Au]+ species is formed by coordination of Au(I) cation with the phosphorous (Lewis base) and the boron (Lewis acid) centers of a frustrated Lewis pair (FLP). The bonds involving Au and P, and Au and B atoms in [(FLP)Au]+ are partially covalent in nature as revealed by Wiberg bond index (WBI) values, electron density analysis and energy decomposition analysis (EDA). The zero point energy corrected bond dissociation energy (D0), enthalpy and free energy changes are computed for the dissociation of Au-Ng bonds to assess the Ng binding ability of [(FLP)Au]+ species. The D0 ranges from 6.0 to 13.3 kcal/mol, which increases from Ar to Rn. Moreover, the dissociation of Au-Ng bonds is endothermic as well as endergonic for Ng = Kr-Rn, whereas the same for Ng = Ar is endothermic but exergonic at room temperature. The partial covalent character of the bonds between Au and Ng atoms is demonstrated by their WBI values and electron density analysis. The Ng atoms get slight positive charges of 0.11–0.23 |e|, which indicates some amount of charge transfer takes place from it. EDA demonstrates that electrostatic and orbital interactions have equal contributions to stabilize the Ng-Au bonds in the [(FLP)AuNg]+ complex.
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Affiliation(s)
- Manas Ghara
- Department of Chemistry and Center for Theoretical Studies, Indian Institute of Technology, Kharagpur, India
| | - Pratim Kumar Chattaraj
- Department of Chemistry and Center for Theoretical Studies, Indian Institute of Technology, Kharagpur, India.,Department of Chemistry, Indian Institute of Technology Bombay, Mumbai, India
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8
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Jana G, Chattaraj PK. Effect of substitution on the bonding in He dimer confined within dodecahedrane: A computational study. J Comput Chem 2020; 41:2398-2405. [PMID: 32827169 DOI: 10.1002/jcc.26403] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Revised: 08/01/2020] [Accepted: 08/04/2020] [Indexed: 12/11/2022]
Abstract
The effect of substitution in the dodecahedrane (C20 H20 ) cage on bonding in the confined He dimer is analyzed. The HeHe distances inside the halogenated dodecahedrane C20 X20 (X = FBr) cages are found to be less than half of that in the free He dimer. Comparing the equilibrium structure of He2 @C20 H20 with He2 @C20 X20 at ωB97XD/def2-TZVPP level, it is found that the He-He distances are relatively larger in the latter cases indicating the influence of halogen groups on the interaction between the cage and the trapped He pair. The viability of the He2 @C20 X20 complexes is reflected in the presence of a very high activation energy barrier against the thermochemically feasible dissociation process producing free He2 and C20 X20 . Quantum theory of atoms in molecules (QTAIM) approach reveals a partial covalent interaction between He pair.
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Affiliation(s)
- Gourhari Jana
- Department of Chemistry and Centre for Theoretical Studies, Indian Institute of Technology Kharagpur, Kharagpur, India
| | - Pratim K Chattaraj
- Department of Chemistry and Centre for Theoretical Studies, Indian Institute of Technology Kharagpur, Kharagpur, India
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai, India
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9
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Tomeno S, Maesato M, Yoshida Y, Kiswandhi A, Kitagawa H. Triangular-Lattice Organic Mott Insulator with a Disorder-Free Polyanion. Inorg Chem 2020; 59:8647-8651. [PMID: 32538624 DOI: 10.1021/acs.inorgchem.0c00880] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We report the synthesis, crystal and band structures, and transport properties of organic conductor κ-(ET)2Cu[Au(CN)2]Cl [ET = bis(ethylenedithio)tetrathiafulvalene], which has a triangular spin-lattice (S = 1/2) composed of (ET)2•+ dimers and polyanions with no disorder. The anisotropy of triangular lattice t'/t = 1.19 and physical properties indicate that this material is the first ET-based quantum-spin-liquid candidate having a nearly regular triangular lattice with a disorder-free anion.
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Affiliation(s)
- Shinya Tomeno
- Division of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Mitsuhiko Maesato
- Division of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Yukihiro Yoshida
- Division of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Andhika Kiswandhi
- Division of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan.,Institute for Solid State Physics, The University of Tokyo, Kashiwanoha, Kashiwa, Chiba 277-8581, Japan
| | - Hiroshi Kitagawa
- Division of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan
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10
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Zhang G, Su Y, Zou X, Fu L, Song J, Chen D, Sun C. Charge-Shift Bonding in Xenon Hydrides: An NBO/NRT Investigation on HXeY···HX (Y = Cl, Br, I; X = OH, Cl, Br, I, CCH, CN) via H-Xe Blue-Shift Phenomena. Front Chem 2020; 8:277. [PMID: 32391318 PMCID: PMC7191121 DOI: 10.3389/fchem.2020.00277] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2020] [Accepted: 03/23/2020] [Indexed: 11/13/2022] Open
Abstract
Noble-gas bonding represents curiosity. Some xenon hydrides, such as HXeY (Y = Cl, Br, I) and their hydrogen-bonded complexes HXeY···HX (Y = Cl, Br, I; X = OH, Cl, Br, I, CN, CCH), have been identified in matrixes by observing H-Xe frequencies or its monomer-to-complex blue shifts. However, the H-Xe bonding in HXeY is not yet completely understood. Previous theoretical studies provide two answers. The first one holds that it is a classical covalent bond, based on a single ionic structure H-Xe+ Y-. The second one holds that it is resonance bonding between H-Xe+ Y- and H- Xe+-Y. This study investigates the H-Xe bonding, via unusual blue-shifted phenomena, combined with some NBO/NRT calculations for chosen hydrogen-bonded complexes HXeY···HX (Y = Cl, Br, I; X = OH, Cl, Br, I, CN, CCH). This study provides new insights into the H-Xe bonding in HXeY. The H-Xe bond in HXeY is not a classical covalent bond. It is a charge-shift (CS) bond, a new class of electron-pair bonds, which is proposed by Shaik and Hiberty et al. The unusual blue shift in studied hydrogen-bonded complexes is its H-Xe CS bonding character in IR spectroscopy. It is expected that these studies on the H-Xe bonding and its IR spectroscopic property might assist the chemical community in accepting this new-class electron-pair bond concept.
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Affiliation(s)
- Guiqiu Zhang
- Key Laboratory of Molecular and Nano Probes, College of Chemistry, Chemical Engineering and Materials Science, Collaborative Innovation Center of Functionalized Probes for Chemical Imaging, Ministry of Education, Shandong Normal University, Jinan, China
| | | | | | | | | | | | - Chuanzhi Sun
- Key Laboratory of Molecular and Nano Probes, College of Chemistry, Chemical Engineering and Materials Science, Collaborative Innovation Center of Functionalized Probes for Chemical Imaging, Ministry of Education, Shandong Normal University, Jinan, China
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11
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Das B, Chakraborty A, Chakraborty S. Experimental and theoretical investigation of ground state intramolecular proton transfer (GSIPT) in salicylideneaniline Schiff base derivatives in polar protic medium. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 225:117443. [PMID: 31677426 DOI: 10.1016/j.saa.2019.117443] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2019] [Revised: 07/22/2019] [Accepted: 07/29/2019] [Indexed: 06/10/2023]
Abstract
Ground state intramolecular proton transfer process has been comprehensively investigated in three salicylideneaniline Schiff base derivatives (SB1, SB2, and SB3) using experimental and theoretical methods. It has been confirmed that all the three Schiff base molecules in the ground electronic state exist in the enol form in non-polar and polar aprotic solvents. Keto form is being populated by the polar protic solvent through ground state intramolecular proton transfer (GSIPT) process. Ground state equilibrium between the enol and keto tautomers for SB1 and SB3 is mainly governed by the proton donating ability of the solvent. Ground state equilibria between the enol and keto tautomers of SB2 which is a positional isomer of SB3 is governed by the polarity and proton donating ability of the solvents. Excited state intramolecular proton transfer (ESIPT) process is also evidenced in all the three Schiff base molecules. Theoretical calculations at the B3LYP/cc-pVDZ level in the gas phase and in different solvents using polarisable continuum model (PCM) have failed to establish the GSIPT process. Microsolvation of individual enol and keto conformers has been investigated considering upto three solvent molecules. The energetics of the individual conformers together with the corresponding transition state have been calculated. It has been confirmed that the keto conformer is more stable compared to the enol conformer in microsolvated cluster of three methanol molecules. Lowering of activation energy for the enol to keto tautomerisation in the presence of methanol also supports the experimental observation for GSIPT process. TDDFT/B3LYP/cc-pVDZ single point calculations for microsolvated clusters of enol and keto form of the Schiff base molecules exhibit an excellent agreement with the experimentally obtained absorption spectra. Difference in spectral nature of the Schiff base molecules has been explained using natural bond orbital (NBO) analysis. Quantum theory of atoms in molecules (QTAIM) has also been utilised to understand the GSIPT process in detail.
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Affiliation(s)
- Bijoya Das
- Department of Chemistry, Birla Institute of Technology and Science, Pilani. Pilani Campus, Vidya Vihar, Pilani, Rajasthan - 333031, India
| | - Amrita Chakraborty
- Department of Chemistry, Birla Institute of Technology and Science, Pilani. Pilani Campus, Vidya Vihar, Pilani, Rajasthan - 333031, India
| | - Shamik Chakraborty
- Department of Chemistry, Birla Institute of Technology and Science, Pilani. Pilani Campus, Vidya Vihar, Pilani, Rajasthan - 333031, India.
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12
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Ligand stabilized transient “MNC” and its influence on MNC → MCN isomerization process: a computational study (M = Cu, Ag, and Au). Theor Chem Acc 2019. [DOI: 10.1007/s00214-019-2532-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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13
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Ghara M, Pan S, Chattaraj PK. Donor-Acceptor vs Electron-Shared Bonding: Triatomic Si nC 3-n ( n ≤ 3) Clusters Stabilized by Cyclic Alkyl(amino) Carbene. J Phys Chem A 2019; 123:10764-10771. [PMID: 31774284 DOI: 10.1021/acs.jpca.9b09807] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
SinC3-n (n ≤ 3) clusters are interstellar species that are transient in nature at ambient conditions. Herein, the structure, stability, and nature of bonding in cyclic alkyl(amino) carbene (cAAC) protected SinC3-n (n ≤ 3) clusters are studied in silico. The Si3(cAAC)3 complex was previously reported to be synthesized in large scale. The present results indicate that because the C-CcAAC bond is stronger than the Si-CcAAC bond, C3(cAAC)3 and SiC2(cAAC)3 complexes have significantly larger stability with respect to ligand dissociation than the Si3(cAAC)3 complex, while Si2C(cAAC)3 has almost the same stability as in the latter complex. Moreover, considering the Si3(cAAC)3 complex as a precursor, the hypothetical successive single Si substitution process by a single C atom in Si3(cAAC)3 complex is exergonic in nature. The bonding situation is analyzed by employing natural bond orbital (NBO), electron density, and energy decomposition analyses in combination with the natural orbital for chemical valence theory. These studies show that the nature of bonding in C-CcAAC and Si-CcAAC bonds differs significantly from each other. The former bonds are best described as an electron-shared double bond, whereas the latter bonds are of donor-acceptor type consisting of two components, Si←CcAAC σ-donation and Si→CcAAC π-back-donation. Nevertheless, in the former bonds, covalent character is larger than the ionic one but in the latter bonds the reverse is true. For some Si-CcAAC bonds, the π-natural orbital cannot be located by the NBO method, presumably because of slightly lower occupancy than the cutoff values, but the electron density analysis confirms that different Si-CcAAC bonds in a given complex are almost equivalent in terms of electron density distribution. This paper reports an interesting change in bonding pattern when one replaces Si by a C atom in triatomic silicon carbide clusters stabilized by a ligand.
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Affiliation(s)
- Manas Ghara
- Department of Chemistry and Center for Theoretical Studies , Indian Institute of Technology Kharagpur , Kharagpur 721302 , India
| | - Sudip Pan
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Jiangsu National Synergetic Innovation Center for Advanced Materials , Nanjing Tech University , Nanjing 211816 , China
| | - Pratim K Chattaraj
- Department of Chemistry and Center for Theoretical Studies , Indian Institute of Technology Kharagpur , Kharagpur 721302 , India.,Department of Chemistry , Indian Institute of Technology Bombay , Mumbai 400076 , India
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14
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Wen M, Li ZZ, Li AY. OBCN isomerization and noble gas insertion compounds of identical valence electron number species: stability and bonding. Phys Chem Chem Phys 2019; 21:26311-26323. [PMID: 31781710 DOI: 10.1039/c9cp04980k] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A series of new noble gas (Ng) insertion compounds of the general type XNgX, XNgY and XNgY+ has been theoretically studied using ab initio and DFT methods herein. We first studied the isomerization process of the OBCN compound, and then investigated the bonding properties and stability of the compounds formed by inserting Ng into the single bond of the three low energy isomers by high-level ab initio calculations. The OBNgCN compounds are thermochemically stable with respect to all dissociation channels except for the processes of releasing OBCN/OBNC and free Ng. Furthermore, the two dissociation processes OBNgCN → Ng + OBNC and OBNgNC → Ng + OBCN are kinetically prohibited by the relatively high free energy barrier ranging from 22.7 to 31.7 kcal mol-1 except for the OBKrCN and OBKrNC analogues. And the adaptive natural density partitioning (AdNDP) analysis indicated that chemical bonding in OBNgCN compounds is realized via a delocalized 3-center 2-electron (3c-2e) σ-bond in the B-Ng-C moiety and a totally delocalized 5-center 2-electron (5c-2e) σ-bond in the whole O-B-Ng-C-N. Natural bond orbital (NBO) theory, atoms-in-molecules (AIM) and energy decomposition analysis (EDA) based on the molecular wavefunction revealed that the B-Ng bond and Ng-C bond have some covalent character in OBNgCN. In addition, the calculation and detailed bonding analysis on a large number of neutral and monocationic compounds with identical valence electron numbers to OBNgCN demonstrate that the two bonds directly linked to the Ng atoms have covalent properties in neutral compounds, whereas Ng forms one typical covalent bond and one partial covalent and partial ionic bond with the neighboring atoms in the monocationic compounds.
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Affiliation(s)
- Mei Wen
- School of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, P. R. China.
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15
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Li ZZ, Wen M, Li AY. Rg nBe 3B 3+: theoretical investigation of Be 3B 3+ and its rare gas capability. J Mol Model 2019; 25:349. [PMID: 31741081 DOI: 10.1007/s00894-019-4248-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2019] [Accepted: 10/30/2019] [Indexed: 11/24/2022]
Abstract
A series of Be3B3+ and its rare gas (Rg) containing complexes RgnBe3B3+ (Rg = He-Rn, n = 1-6) have been predicted theoretically using the B3LYP, MP2, and CCSD(T) methods to explore structures, stability, charge distributions, and nature of bonding. Both Be3B3+ and RgBe3B3+ are the global minima on the potential energy surfaces. In the RgnBe3B3+ complexes, the dissociation energy drops with the increase in number of Rg. Natural bond orbital (NBO) and topological analysis of the electron density (AIM) show that the Rg-Be bonds for Kr-Rn have some covalent character. The Rg-Be bond is stabilized dominantly by the Rg → Be3B3+ σ-donation from the valence p orbital of Rg to the vacant valence LUMO orbital of Rgn-1Be3B3+. Besides, other two π-donations also play important roles in stabilizing the Rg-Be bonds.
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Affiliation(s)
- Zhuo Zhe Li
- School of Chemistry and Chemical Engineering, Southwest University, Tiansheng Road No. 2, Chongqing, 400715, People's Republic of China.
| | - Mei Wen
- School of Chemistry and Chemical Engineering, Southwest University, Tiansheng Road No. 2, Chongqing, 400715, People's Republic of China
| | - An Yong Li
- School of Chemistry and Chemical Engineering, Southwest University, Tiansheng Road No. 2, Chongqing, 400715, People's Republic of China.
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16
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Affiliation(s)
- Gerd Ballmann
- Inorganic and Organometallic Chemistry Universität Erlangen-Nürnberg Egerlandstrasse 1 91058 Erlangen Germany
| | - Holger Elsen
- Inorganic and Organometallic Chemistry Universität Erlangen-Nürnberg Egerlandstrasse 1 91058 Erlangen Germany
| | - Sjoerd Harder
- Inorganic and Organometallic Chemistry Universität Erlangen-Nürnberg Egerlandstrasse 1 91058 Erlangen Germany
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Abstract
Preference for the binding mode of the CN- ligand to Mg (Mg-CN vs. Mg-NC) is investigated. A monomeric Mg complex with a terminal CN ligand was prepared using the dipyrromethene ligand Mes DPM which successfully blocks dimerization. While reaction of (Mes DPM)MgN(SiMe3 )2 with Me3 SiCN gave the coordination complex (Mes DPM)MgN(SiMe3 )2 ⋅NCSiMe3 , reaction with (Mes DPM)Mg(nBu) led to (Mes DPM)MgNC⋅(THF)2 . A Mg-NC/Mg-CN ratio of ≈95:5 was established by crystal-structure determination and DFT calculations. IR studies show absorbances for CN stretching at 2085 cm-1 (Mg-NC) and 2162 cm-1 (Mg-CN) as confirmed by 13 C labeling. In solution and in the solid state, the CN ligand rotates within the pocket. The calculated isomerization barrier is only 12.0 kcal mol-1 and the 13 C NMR signal for CN decoalesces at -85 °C (Mg-NC: 175.9 ppm, Mg-CN: 144.3 ppm). Experiment and theory both indicate that Mg complexes with the CN- ligand should not be named cyanides but are more properly defined as isocyanides.
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Affiliation(s)
- Gerd Ballmann
- Inorganic and Organometallic ChemistryUniversität Erlangen-NürnbergEgerlandstrasse 191058ErlangenGermany
| | - Holger Elsen
- Inorganic and Organometallic ChemistryUniversität Erlangen-NürnbergEgerlandstrasse 191058ErlangenGermany
| | - Sjoerd Harder
- Inorganic and Organometallic ChemistryUniversität Erlangen-NürnbergEgerlandstrasse 191058ErlangenGermany
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Saha R, Jana G, Pan S, Merino G, Chattaraj PK. How Far Can One Push the Noble Gases Towards Bonding?: A Personal Account. Molecules 2019; 24:E2933. [PMID: 31412650 PMCID: PMC6719121 DOI: 10.3390/molecules24162933] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2019] [Revised: 07/29/2019] [Accepted: 07/30/2019] [Indexed: 01/29/2023] Open
Abstract
Noble gases (Ngs) are the least reactive elements in the periodic table towards chemical bond formation when compared with other elements because of their completely filled valence electronic configuration. Very often, extreme conditions like low temperatures, high pressures and very reactive reagents are required for them to form meaningful chemical bonds with other elements. In this personal account, we summarize our works to date on Ng complexes where we attempted to theoretically predict viable Ng complexes having strong bonding to synthesize them under close to ambient conditions. Our works cover three different types of Ng complexes, viz., non-insertion of NgXY type, insertion of XNgY type and Ng encapsulated cage complexes where X and Y can represent any atom or group of atoms. While the first category of Ng complexes can be thermochemically stable at a certain temperature depending on the strength of the Ng-X bond, the latter two categories are kinetically stable, and therefore, their viability and the corresponding conditions depend on the size of the activation barrier associated with the release of Ng atom(s). Our major focus was devoted to understand the bonding situation in these complexes by employing the available state-of-the-art theoretic tools like natural bond orbital, electron density, and energy decomposition analyses in combination with the natural orbital for chemical valence theory. Intriguingly, these three types of complexes represent three different types of bonding scenarios. In NgXY, the strength of the donor-acceptor Ng→XY interaction depends on the polarizing power of binding the X center to draw the rather rigid electron density of Ng towards itself, and sometimes involvement of such orbitals becomes large enough, particularly for heavier Ng elements, to consider them as covalent bonds. On the other hand, in most of the XNgY cases, Ng forms an electron-shared covalent bond with X while interacting electrostatically with Y representing itself as [XNg]+Y-. Nevertheless, in some of the rare cases like NCNgNSi, both the C-Ng and Ng-N bonds can be represented as electron-shared covalent bonds. On the other hand, a cage host is an excellent moiety to examine the limits that can be pushed to attain bonding between two Ng atoms (even for He) at high pressure. The confinement effect by a small cage-like B12N12 can even induce some covalent interaction within two He atoms in the He2@B12N12 complex.
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Affiliation(s)
- Ranajit Saha
- Department of Chemistry and Centre for Theoretical Studies Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Gourhari Jana
- Department of Chemistry and Centre for Theoretical Studies Indian Institute of Technology Kharagpur, Kharagpur 721302, India
| | - Sudip Pan
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Jiangsu National Synergetic Innovation Center for Advanced Materials, Nanjing Tech University, Nanjing 211816, China.
| | - Gabriel Merino
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida. Km 6 Antigua Carretera a Progreso. Apdo. Postal 73, Cordemex, Mérida 97310, Yuc., Mexico.
| | - Pratim Kumar Chattaraj
- Department of Chemistry and Centre for Theoretical Studies Indian Institute of Technology Kharagpur, Kharagpur 721302, India.
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India.
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Hou M, Jin K, Li Q, Liu S. Systematic study of the substitution effect on the tetrel bond between 1,4-diazabicyclo[2.2.2]octane and TH 3X. RSC Adv 2019; 9:18459-18466. [PMID: 35515262 PMCID: PMC9064731 DOI: 10.1039/c9ra03351c] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2019] [Accepted: 06/03/2019] [Indexed: 11/21/2022] Open
Abstract
A tetrel bond was characterized in the complexes of 1,4-diazabicyclo[2.2.2]octane (DABCO) with TH3X (T = C, Si, Ge; X= -Me, -H, -OH, -NH2, -F, -Cl, -Br, -I, -CN, -NO2). DABCO engages in a weak tetrel bond with CH3X but a stronger one with SiH3X and GeH3X. SiH3X is favorable to bind with DABCO relative to GeH3X, inconsistent with the magnitude of the σ-hole on the tetrel atom. The methyl group in the tetrel donor weakens the tetrel bond but an enhancing effect is found for the other substituents, particularly -NO2. The substitution effect is also related to the nature of the tetrel atom. The halogen substitution from F to I has a weakening effect in the CH3X complex but an enhancing effect in the SiH3X complex and a negligible effect in the GeH3X complex. The above abnormal results found in these complexes can be partly attributed to the charge transfer from the lone pair on the nitrogen atom of DABCO into the anti-bonding orbital σ*(T-X) of TH3X. The stability of both SiH3X and GeH3X complexes is primarily controlled by electrostatic interactions and polarization.
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Affiliation(s)
- Mingchang Hou
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University Yantai 264005 People's Republic of China
| | - Kunyu Jin
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University Yantai 264005 People's Republic of China
| | - Qingzhong Li
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University Yantai 264005 People's Republic of China
| | - Shufeng Liu
- Shandong Key Laboratory of Biochemical Analysis, College of Chemistry and Molecular Engineering, Qingdao University of Science and Technology Qingdao 266042 PR China
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Jana G, Jha R, Pan S, Chattaraj PK. Microsolvation of lithium–phosphorus double helix: a DFT study. Theor Chem Acc 2019. [DOI: 10.1007/s00214-019-2462-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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21
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Understanding the sequence of the electronic flow along the HCN/CNH isomerization within a bonding evolution theory quantum topological framework. Theor Chem Acc 2019. [DOI: 10.1007/s00214-019-2440-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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22
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Pan S, Jana G, Merino G, Chattaraj PK. Noble-Noble Strong Union: Gold at Its Best to Make a Bond with a Noble Gas Atom. ChemistryOpen 2019; 8:173-187. [PMID: 30740292 PMCID: PMC6356865 DOI: 10.1002/open.201800257] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2018] [Revised: 12/25/2018] [Indexed: 11/29/2022] Open
Abstract
This Review presents the current status of the noble gas (Ng)‐noble metal chemistry, which began in 1977 with the detection of AuNe+ through mass spectroscopy and then grew from 2000 onwards; currently, the field is in a somewhat matured state. On one side, modern quantum chemistry is very effective in providing important insights into the structure, stability, and barrier for the decomposition of Ng compounds and, as a result, a plethora of viable Ng compounds have been predicted. On the other hand. experimental achievement also goes beyond microscopic detection and characterization through spectroscopic techniques and crystal structures at ambient temperature; for example, (AuXe4)2+(Sb2F11−)2 have also been obtained. The bonding between two noble elements of the periodic table can even reach the covalent limit. The relativistic effect makes gold a very special candidate to form a strong bond with Ng in comparison to copper and silver. Insertion compounds, which are metastable in nature, depending on their kinetic stability, display an even more fascinating bonding situation. The degree of covalency in Ng–M (M=noble metal) bonds of insertion compounds is far larger than that in non‐insertion compounds. In fact, in MNgCN (M=Cu, Ag, Au) molecules, the M−Ng and Ng−C bonds might be represented as classical 2c–2e σ bonds. Therefore, noble metals, particularly gold, provide the opportunity for experimental chemists to obtain sufficiently stable complexes with Ng at room temperature in order to characterize them by using experimental techniques and, with the intriguing bonding situation, to explore them with various computational tools from a theoretical perspective. This field is relatively young and, in the coming years, a lot of advancement is expected experimentally as well as theoretically.
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Affiliation(s)
- Sudip Pan
- Institute of Advanced Synthesis School of Chemistry and Molecular Engineering Jiangsu National Synergetic Innovation Center for Advanced Materials Nanjing Tech University Nanjing 211816 China
| | - Gourhari Jana
- Department of Chemistry and Centre for Theoretical Studies Indian Institute of Technology Kharagpur Kharagpur 721302 India
| | - Gabriel Merino
- Departamento de Física Aplicada Centro de Investigación y de Estudios Avanzados Unidad Mérida. Km 6 Antigua Carretera a Progreso. Apdo. Postal 73 Cordemex 97310 Mérida, Yuc. México
| | - Pratim K Chattaraj
- Department of Chemistry and Centre for Theoretical Studies Indian Institute of Technology Kharagpur Kharagpur 721302 India.,Department of Chemistry Indian Institute of Technology Bombay Mumbai 400076 India
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23
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Jana G, Pan S, Merino G, Chattaraj PK. Noble Gas Inserted Metal Acetylides (Metal = Cu, Ag, Au). J Phys Chem A 2018; 122:7391-7401. [DOI: 10.1021/acs.jpca.8b05404] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Gourhari Jana
- Department of Chemistry and Centre for Theoretical Studies, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India
| | - Sudip Pan
- Institute of Advanced Synthesis, School of Chemistry and Molecular Engineering, Jiangsu National Synergetic Innovation Center for Advanced Materials, Nanjing Tech University, Nanjing, China
| | - Gabriel Merino
- Departamento de Física Aplicada, Centro de Investigación y de Estudios Avanzados, Unidad Mérida. Km 6 Antigua Carretera a Progreso. Apdo. Postal 73, Cordemex, 97310, Mérida, Yuc., México
| | - Pratim K. Chattaraj
- Department of Chemistry and Centre for Theoretical Studies, Indian Institute of Technology Kharagpur, Kharagpur, 721302, India
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai-400076, India
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