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Juárez G, Sanz-Novo M, Aguado R, Alonso JL, León I, Alonso ER. The eight structures of caffeic acid: a jet-cooled laser ablated rotational study. RSC Adv 2022; 13:212-219. [PMID: 36605649 PMCID: PMC9768571 DOI: 10.1039/d2ra07124j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2022] [Accepted: 12/04/2022] [Indexed: 12/24/2022] Open
Abstract
This work reports a complete conformational analysis of caffeic acid, an exceptionally versatile pharmacophore, using laser ablation chirped-pulse Fourier transform microwave spectroscopy. The whole conformational space consisting of eight distinct species has been fully deciphered based on the trend of the rotational constants supported by theoretical computations. We show how rotational spectroscopy can be confidently used to distinguish between conformers even when the structural differences are minimal, such as those involved in the conformational panorama of caffeic acid. Additionally, the structural information here provided, such as the planarity observed in all the conformers, could help to elucidate the mechanisms underlying the biological and pharmacological activity of hydroxycinnamic acids.
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Affiliation(s)
- G. Juárez
- Grupo de Espectroscopía Molecular (GEM), Edificio Quifima, Laboratorios de Espectroscopía y Bioespectroscopía, Unidad Asociada CSIC, Parque Científico Uva Universidad de ValladolidPaseo de Belén 547011 ValladolidSpain
| | - M. Sanz-Novo
- Grupo de Espectroscopía Molecular (GEM), Edificio Quifima, Laboratorios de Espectroscopía y Bioespectroscopía, Unidad Asociada CSIC, Parque Científico Uva Universidad de ValladolidPaseo de Belén 547011 ValladolidSpain
| | - R. Aguado
- Grupo de Espectroscopía Molecular (GEM), Edificio Quifima, Laboratorios de Espectroscopía y Bioespectroscopía, Unidad Asociada CSIC, Parque Científico Uva Universidad de ValladolidPaseo de Belén 547011 ValladolidSpain
| | - J. L. Alonso
- Grupo de Espectroscopía Molecular (GEM), Edificio Quifima, Laboratorios de Espectroscopía y Bioespectroscopía, Unidad Asociada CSIC, Parque Científico Uva Universidad de ValladolidPaseo de Belén 547011 ValladolidSpain
| | - I. León
- Grupo de Espectroscopía Molecular (GEM), Edificio Quifima, Laboratorios de Espectroscopía y Bioespectroscopía, Unidad Asociada CSIC, Parque Científico Uva Universidad de ValladolidPaseo de Belén 547011 ValladolidSpain
| | - E. R. Alonso
- Grupo de Espectroscopía Molecular (GEM), Edificio Quifima, Laboratorios de Espectroscopía y Bioespectroscopía, Unidad Asociada CSIC, Parque Científico Uva Universidad de ValladolidPaseo de Belén 547011 ValladolidSpain
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2
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Alessandrini S, Melosso M, Jiang N, Bizzocchi L, Dore L, Puzzarini C. Conformational stability of cyclopropanecarboxaldehyde is ruled by vibrational effects. Mol Phys 2021. [DOI: 10.1080/00268976.2021.1955988] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Silvia Alessandrini
- Scuola Normale Superiore, Pisa, Italy
- Dipartimento di Chimica “Giacomo Ciamician”, Università di Bologna, Bologna, Italy
| | - Mattia Melosso
- Dipartimento di Chimica “Giacomo Ciamician”, Università di Bologna, Bologna, Italy
| | - Ningjing Jiang
- Dipartimento di Chimica “Giacomo Ciamician”, Università di Bologna, Bologna, Italy
| | - Luca Bizzocchi
- Scuola Normale Superiore, Pisa, Italy
- Dipartimento di Chimica “Giacomo Ciamician”, Università di Bologna, Bologna, Italy
| | - Luca Dore
- Dipartimento di Chimica “Giacomo Ciamician”, Università di Bologna, Bologna, Italy
| | - Cristina Puzzarini
- Dipartimento di Chimica “Giacomo Ciamician”, Università di Bologna, Bologna, Italy
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3
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Léon I, Tasinato N, Spada L, Alonso ER, Mata S, Balbi A, Puzzarini C, Alonso JL, Barone V. Looking for the Elusive Imine Tautomer of Creatinine: Different States of Aggregation Studied by Quantum Chemistry and Molecular Spectroscopy. Chempluschem 2021; 86:1374-1386. [PMID: 34255935 PMCID: PMC8519097 DOI: 10.1002/cplu.202100224] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2021] [Revised: 06/22/2021] [Indexed: 01/06/2023]
Abstract
New spectroscopic experiments and state-of-the-art quantum-chemical computations of creatinine in different aggregation states unequivocally unveiled a significant tuning of tautomeric equilibrium by the environment: from the exclusive presence of the amine tautomer in the solid state and aqueous solution to a mixture of amine and imine tautomers in the gas phase. Quantum-chemical calculations predict the amine species as the most stable tautomer by about 30 kJ mol-1 in condensed phases. On the contrary, moving to the isolated forms, both Z and E imine isomers become more stable by about 7 kJ mol-1 . Since the imine isomers and one amine tautomer are separated by significant energy barriers, all of them should be present in the gas phase. This prediction has indeed been confirmed by high-resolution rotational spectroscopy, which provides the first experimental characterization of the elusive imine tautomer. The interpretation of the complicated hyperfine structure of the rotational spectrum, originated by three 14 N nuclei, makes it possible to use the spectral signatures as a sort of fingerprint for each individual tautomer in the complex sample.
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Affiliation(s)
- Iker Léon
- Grupo de Espectroscopia Molecular (GEM), Edificio Quifima, Laboratorios de Espectroscopia y Bioespectroscopia Parque Cientifico UVa, Universidad de Valladolid, 47011, Valladolid, Spain
| | - Nicola Tasinato
- Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126, Pisa, Italy
| | - Lorenzo Spada
- Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126, Pisa, Italy.,Dipartimento di Chimica "Giacomo Ciamician", Alma Mater Studiorum -, Università di Bologna, Via Selmi 2, 40126, Bologna, Italy
| | - Elena R Alonso
- Grupo de Espectroscopia Molecular (GEM), Edificio Quifima, Laboratorios de Espectroscopia y Bioespectroscopia Parque Cientifico UVa, Universidad de Valladolid, 47011, Valladolid, Spain
| | - Santiago Mata
- Grupo de Espectroscopia Molecular (GEM), Edificio Quifima, Laboratorios de Espectroscopia y Bioespectroscopia Parque Cientifico UVa, Universidad de Valladolid, 47011, Valladolid, Spain
| | - Alice Balbi
- Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126, Pisa, Italy
| | - Cristina Puzzarini
- Dipartimento di Chimica "Giacomo Ciamician", Alma Mater Studiorum -, Università di Bologna, Via Selmi 2, 40126, Bologna, Italy
| | - Jose L Alonso
- Grupo de Espectroscopia Molecular (GEM), Edificio Quifima, Laboratorios de Espectroscopia y Bioespectroscopia Parque Cientifico UVa, Universidad de Valladolid, 47011, Valladolid, Spain
| | - Vincenzo Barone
- Scuola Normale Superiore, Piazza dei Cavalieri 7, I-56126, Pisa, Italy
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4
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Alonso ER, Fusè M, León I, Puzzarini C, Alonso JL, Barone V. Exploring the Maze of Cycloserine Conformers in the Gas Phase Guided by Microwave Spectroscopy and Quantum Chemistry. J Phys Chem A 2021; 125:2121-2129. [DOI: 10.1021/acs.jpca.1c00455] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Elena R. Alonso
- Instituto Biofisika (UPV/EHU, CSIC), University of the Basque Country, Fundación Biofísica Bizkaia/Biofisika Bizkaia Fundazioa (FBB), Barrio Sarriena s/n, Leioa, Spain
| | - Marco Fusè
- SMART Laboratory, Scuola Normale Superiore di Pisa, piazza dei Cavalieri 7, 56126 Pisa, Italy
| | - Iker León
- Grupo de Espectroscopia Molecular (GEM), Edificio Quifima, Laboratorios de Espectroscopia y Bioespectroscopia Parque Cientifico UVa, Universidad de Valladolid, 47005 Valladolid, Spain
| | - Cristina Puzzarini
- Dipartimento di “Chimica Giacomo Ciamician”, University of Bologna, via F. Selmi 2, 40126, Bologna, Italy
| | - José L. Alonso
- Grupo de Espectroscopia Molecular (GEM), Edificio Quifima, Laboratorios de Espectroscopia y Bioespectroscopia Parque Cientifico UVa, Universidad de Valladolid, 47005 Valladolid, Spain
| | - Vincenzo Barone
- SMART Laboratory, Scuola Normale Superiore di Pisa, piazza dei Cavalieri 7, 56126 Pisa, Italy
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Quesada Moreno MM, Pinacho P, Pérez C, Šekutor M, Schreiner PR, Schnell M. London Dispersion and Hydrogen-Bonding Interactions in Bulky Molecules: The Case of Diadamantyl Ether Complexes. Chemistry 2020; 26:10817-10825. [PMID: 32428323 PMCID: PMC7497036 DOI: 10.1002/chem.202001444] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Revised: 05/12/2020] [Indexed: 02/05/2023]
Abstract
Diadamantyl ether (DAE, C20 H30 O) represents a good model to study the interplay between London dispersion and hydrogen-bond interactions. By using broadband rotational spectroscopy, an accurate experimental structure of the diadamantyl ether monomer is obtained and its aggregates with water and a variety of aliphatic alcohols of increasing size are analyzed. In the monomer, C-H⋅⋅⋅H-C London dispersion attractions between the two adamantyl subunits further stabilize its structure. Water and the alcohol partners bind to diadamantyl ether through hydrogen bonding and non-covalent Owater/alcohol ⋅⋅⋅H-CDAE and C-Halcohol ⋅⋅⋅H-CDAE interactions. Electrostatic contributions drive the stabilization of all the complexes, whereas London dispersion interactions become more pronounced with increasing size of the alcohol. Complexes with dominant dispersion contributions are significantly higher in energy and were not observed in the experiment. The results presented herein shed light on the first steps of microsolvation and aggregation of molecular complexes with London dispersion energy donor (DED) groups and the kind of interactions that control them.
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Affiliation(s)
- María Mar Quesada Moreno
- Deutsches Elektronen-SynchrotronNotkestr. 8522607HamburgGermany
- Institute of Physical ChemistryChristian-Albrechts-Universität zu KielMax-Eyth-Str. 124118KielGermany
| | - Pablo Pinacho
- Deutsches Elektronen-SynchrotronNotkestr. 8522607HamburgGermany
- Institute of Physical ChemistryChristian-Albrechts-Universität zu KielMax-Eyth-Str. 124118KielGermany
| | - Cristóbal Pérez
- Deutsches Elektronen-SynchrotronNotkestr. 8522607HamburgGermany
- Institute of Physical ChemistryChristian-Albrechts-Universität zu KielMax-Eyth-Str. 124118KielGermany
| | - Marina Šekutor
- Institute of Organic ChemistryJustus Liebig UniversityHeinrich-Buff-Ring 1735392GiessenGermany
| | - Peter R. Schreiner
- Institute of Organic ChemistryJustus Liebig UniversityHeinrich-Buff-Ring 1735392GiessenGermany
| | - Melanie Schnell
- Deutsches Elektronen-SynchrotronNotkestr. 8522607HamburgGermany
- Institute of Physical ChemistryChristian-Albrechts-Universität zu KielMax-Eyth-Str. 124118KielGermany
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León I, Alonso ER, Mata S, Cabezas C, Alonso JL. Unveiling the Neutral Forms of Glutamine. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201907222] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Iker León
- Grupo de Espectrocopía Molecular (GEM)Edificio QuifimaLaboratorios de Espectroscopia y BioespectroscopiaUnidad Asociada CSICParque Científico UVaUniversidad de Valladolid 47011 Valladolid Spain
| | - Elena R. Alonso
- Grupo de Espectrocopía Molecular (GEM)Edificio QuifimaLaboratorios de Espectroscopia y BioespectroscopiaUnidad Asociada CSICParque Científico UVaUniversidad de Valladolid 47011 Valladolid Spain
| | - Santiago Mata
- Grupo de Espectrocopía Molecular (GEM)Edificio QuifimaLaboratorios de Espectroscopia y BioespectroscopiaUnidad Asociada CSICParque Científico UVaUniversidad de Valladolid 47011 Valladolid Spain
| | - Carlos Cabezas
- Grupo de Espectrocopía Molecular (GEM)Edificio QuifimaLaboratorios de Espectroscopia y BioespectroscopiaUnidad Asociada CSICParque Científico UVaUniversidad de Valladolid 47011 Valladolid Spain
| | - Jose Luis Alonso
- Grupo de Espectrocopía Molecular (GEM)Edificio QuifimaLaboratorios de Espectroscopia y BioespectroscopiaUnidad Asociada CSICParque Científico UVaUniversidad de Valladolid 47011 Valladolid Spain
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7
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León I, Alonso ER, Mata S, Cabezas C, Alonso JL. Unveiling the Neutral Forms of Glutamine. Angew Chem Int Ed Engl 2019; 58:16002-16007. [DOI: 10.1002/anie.201907222] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2019] [Revised: 08/21/2019] [Indexed: 11/08/2022]
Affiliation(s)
- Iker León
- Grupo de Espectrocopía Molecular (GEM) Edificio Quifima Laboratorios de Espectroscopia y Bioespectroscopia Unidad Asociada CSIC Parque Científico UVa Universidad de Valladolid 47011 Valladolid Spain
| | - Elena R. Alonso
- Grupo de Espectrocopía Molecular (GEM) Edificio Quifima Laboratorios de Espectroscopia y Bioespectroscopia Unidad Asociada CSIC Parque Científico UVa Universidad de Valladolid 47011 Valladolid Spain
| | - Santiago Mata
- Grupo de Espectrocopía Molecular (GEM) Edificio Quifima Laboratorios de Espectroscopia y Bioespectroscopia Unidad Asociada CSIC Parque Científico UVa Universidad de Valladolid 47011 Valladolid Spain
| | - Carlos Cabezas
- Grupo de Espectrocopía Molecular (GEM) Edificio Quifima Laboratorios de Espectroscopia y Bioespectroscopia Unidad Asociada CSIC Parque Científico UVa Universidad de Valladolid 47011 Valladolid Spain
| | - Jose Luis Alonso
- Grupo de Espectrocopía Molecular (GEM) Edificio Quifima Laboratorios de Espectroscopia y Bioespectroscopia Unidad Asociada CSIC Parque Científico UVa Universidad de Valladolid 47011 Valladolid Spain
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