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Jurček O, Chattopadhyay S, Kalenius E, Linnanto JM, Kiesilä A, Jurček P, Radiměřský P, Marek R. Unsymmetric Chiral Ligands for Large Metallo-Macrocycles: Selectivity of Orientational Self-Sorting. Angew Chem Int Ed Engl 2024:e202409134. [PMID: 38845398 DOI: 10.1002/anie.202409134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2024] [Indexed: 08/02/2024]
Abstract
Nature uses various chiral and unsymmetric building blocks to form substantial and complex supramolecular assemblies. In contrast, the majority of organic ligands used in metallosupramolecular chemistry are symmetric and achiral. Here we extend the group of unsymmetric chiral bile acids used as a scaffold for organic bispyridyl ligands by employing chenodeoxycholic acid (CDCA), an epimer of the previously used ursodeoxycholic acid (UDCA). The epimerism, flexibility, and bulkiness of the ligands leads to large structural differences in coordination products upon reaction with Pd(NO3)2. The UDCA-bispyridyl ligand self-assembles quantitatively into a single crown-like Pd3L6 complex, whereas the CDCA ligand provides a mixture of coordination complexes of general formula PdnL2n, i.e., Pd2L4, Pd3L6, Pd4L8, Pd5L10, and even Pd6L12 containing an impressive 120 chiral centers. The coordination products were studied by a combination of analytical methods, with ion-mobility mass spectrometry (IM-MS) providing valuable details on their structure and allowed an effective separation of m/z 1461 to individual signals according to the arrival time distribution, thereby revealing four different ions of [Pd3L6(NO3)3]3+, [Pd4L8(NO3)4]4+, [Pd5L10(NO3)5]5+, and [Pd6L12(NO3)6]6+. The structures of all the complexes were modelled using DFT calculations. Finally, the challenges and conclusions in determining the specific structural identity of these unsymmetric species are discussed.
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Affiliation(s)
- Ondřej Jurček
- Department of Natural Drugs, Faculty of Pharmacy, Masaryk University, Palackého 1946/1, CZ-61200, Brno, Czechia
- Department of Chemistry, Faculty of Science, Masaryk University, Kamenice 5, CZ-62500, Brno, Czechia
- CEITEC-Central European Institute of Technology, Masaryk University, Kamenice 5, CZ-62500, Brno, Czechia
| | - Subhasis Chattopadhyay
- Department of Chemistry, Faculty of Science, Masaryk University, Kamenice 5, CZ-62500, Brno, Czechia
- CEITEC-Central European Institute of Technology, Masaryk University, Kamenice 5, CZ-62500, Brno, Czechia
| | - Elina Kalenius
- Department of Chemistry, University of Jyvaskyla P. O. Box 35, FI-40014, Jyväskylä, Finland
| | - Juha M Linnanto
- Institute of Physics, University of Tartu, W. Ostwald Street 1, 50411, Tartu, Estonia
| | - Anniina Kiesilä
- Department of Chemistry, University of Jyvaskyla P. O. Box 35, FI-40014, Jyväskylä, Finland
| | - Pia Jurček
- CEITEC-Central European Institute of Technology, Masaryk University, Kamenice 5, CZ-62500, Brno, Czechia
| | - Petr Radiměřský
- Department of Chemistry, Faculty of Science, Masaryk University, Kamenice 5, CZ-62500, Brno, Czechia
| | - Radek Marek
- Department of Chemistry, Faculty of Science, Masaryk University, Kamenice 5, CZ-62500, Brno, Czechia
- CEITEC-Central European Institute of Technology, Masaryk University, Kamenice 5, CZ-62500, Brno, Czechia
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2
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de Montmollin J, Solea AB, Chen DW, Fadaei-Tirani F, Severin K. Orientational Self-Sorting in Octahedral Palladium Cages: Scope and Limitations of the " cis Rule". Inorg Chem 2024; 63:4583-4588. [PMID: 38198590 DOI: 10.1021/acs.inorgchem.3c04033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2024]
Abstract
Octahedral coordination cages of the general formula [Pd6L12](BF4)12 were obtained by combining [Pd(CH3CN)4](BF4)2 with heteroditopic N-donor ligands. Four different ligands were employed. These ligands have 3-pyridyl donor groups at one end and 4-pyridyl, imidazolyl, or triazolyl donor groups at the other end. According to a geometric analysis, cages with a cis configuration at the six metal centers should be preferred ("cis rule"). This prediction was corroborated by spectroscopic data and crystallographic analyses. Limitations of the "cis rule" were also encountered, and possible explanations are discussed.
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Affiliation(s)
- Jean de Montmollin
- Institute of Chemical Sciences and Engineering, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne CH-1015, Switzerland
| | - Atena B Solea
- Institute of Chemical Sciences and Engineering, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne CH-1015, Switzerland
| | - Damien W Chen
- Institute of Chemical Sciences and Engineering, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne CH-1015, Switzerland
| | - Farzaneh Fadaei-Tirani
- Institute of Chemical Sciences and Engineering, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne CH-1015, Switzerland
| | - Kay Severin
- Institute of Chemical Sciences and Engineering, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne CH-1015, Switzerland
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3
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Takahashi S, Iuchi S, Hiraoka S, Sato H. Theoretical and computational methodologies for understanding coordination self-assembly complexes. Phys Chem Chem Phys 2023; 25:14659-14671. [PMID: 37051715 DOI: 10.1039/d3cp00082f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/14/2023]
Abstract
This perspective highlights three theoretical and computational methods to capture the coordination self-assembly processes at the molecular level: quantum chemical modeling, molecular dynamics, and reaction network analysis. These methods cover the different scales from the metal-ligand bond to a more global aspect, and approaches that are best suited to understand the coordination self-assembly from different perspectives are introduced. Theoretical and numerical researches based on these methods are not merely ways of interpreting the experimental studies but complementary to them.
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Affiliation(s)
- Satoshi Takahashi
- Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1 Komaba, Meguro-ku, Tokyo 153-8902, Japan.
| | - Satoru Iuchi
- Graduate School of Informatics, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan
| | - Shuichi Hiraoka
- Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, 3-8-1 Komaba, Meguro-ku, Tokyo 153-8902, Japan.
| | - Hirofumi Sato
- Department of Molecular Engineering, Kyoto University, Nishikyo-ku, Kyoto 615-8510, Japan.
- Fukui Institute for Fundamental Chemistry, Kyoto University, Sakyo-ku, Kyoto 606-8103, Japan
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4
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Ghorai S, Maji S, Paul B, Samanta K, Kumar Sen S, Natarajan R. Chiral Self-Sorting in Pd 6 L 12 Metal-Organic Cages. Chem Asian J 2023; 18:e202201312. [PMID: 36808865 DOI: 10.1002/asia.202201312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2022] [Revised: 02/04/2023] [Accepted: 02/20/2023] [Indexed: 02/22/2023]
Abstract
Chiral self-sorting during the formation of cage-like molecules continues to fascinate and advance our understanding of the phenomenon in general. Herein, we report the chiral self-sorting in the Pd6 L12 -type metal-organic cages. When a racemic mixture of axially chiral bis-pyridyl ligands undergo coordination-driven self-assembly with Pd(II) ions to form Pd6 L12 -type cages, the system has the option of chiral self-sorting to afford any of at least 70 pairs of (one homochiral and 69 heterochiral) enantiomers and 5 meso isomers or a statistical mixture of everything. However, the system resulted in diastereoselective self-assembly through a high-fidelity chiral social self-sorting to form a racemic mixture of D3 symmetric heterochiral [Pd6 (L6R/6S )12 ]12+ /[Pd6 (L6S/6R )12 ]12+ cages.
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Affiliation(s)
- Sandipan Ghorai
- Organic and Medicinal Chemistry Division, CSIR Indian Institute of Chemical Biology, 4 Raja S C Mullick Road, Kolkata, 700031, India.,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Suman Maji
- Organic and Medicinal Chemistry Division, CSIR Indian Institute of Chemical Biology, 4 Raja S C Mullick Road, Kolkata, 700031, India.,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Bhaswati Paul
- Organic and Medicinal Chemistry Division, CSIR Indian Institute of Chemical Biology, 4 Raja S C Mullick Road, Kolkata, 700031, India.,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Krishanu Samanta
- Organic and Medicinal Chemistry Division, CSIR Indian Institute of Chemical Biology, 4 Raja S C Mullick Road, Kolkata, 700031, India.,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Shovan Kumar Sen
- Organic and Medicinal Chemistry Division, CSIR Indian Institute of Chemical Biology, 4 Raja S C Mullick Road, Kolkata, 700031, India.,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Ramalingam Natarajan
- Organic and Medicinal Chemistry Division, CSIR Indian Institute of Chemical Biology, 4 Raja S C Mullick Road, Kolkata, 700031, India.,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
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5
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Sarkar M, Boomishankar R. Mapping the Assembly of Neutral Tetrahedral Cages Tethered by Oximido Linkers and Their Guest Encapsulation Studies. Inorg Chem 2023; 62:1855-1863. [PMID: 35623320 DOI: 10.1021/acs.inorgchem.2c01178] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
A primary criterion for the design of polyhedral metal-organic cages is the requirement of geometrically matched pairs of metal ions and ligand moieties. However, understanding the pathway it takes to reach the final polyhedral structure can provide more insights into the self-assembly process and improved design strategies. In this regard, we report two neutral tetrahedral cages with the formulas {[Pd3(NiPr)3PO]4(L1)6} (1-TD) and {[Pd3(NiPr)3PO]4(L2)6} (2-TD) starting from the acetate-bridged cluster {[Pd3(NiPr)3PO]2(OAc)2(OH)}2·2(CH3)2SO (HEXA-Pd) and the respective oxamide precursors (L1H2: [C2(NH2)2O2]) and (L2H2: (C2(NHMe)2O2]). When subtle variations in the reaction conditions were made, two new tetrameric Pd12 assemblies, {[Pd3(NiPr)3PO]4(L1)2(OAc)4(OMe)4} (1-TM) and {[Pd3(NiPr)3PO]4(L2)2(OAc)4(OMe)4} (2-TM), were obtained from the same precursors. Detailed investigations using NMR, mass spectrometry, X-ray crystallography, and computational studies indicate that the macrocyclic complexes 1-TM and 2-TM are the reaction intermediates involved in the formation of the tetrahedral cages 1-TD and 2-TD, respectively. Moreover, the tetrahedral cages 1-TD and 2-TD exhibited intrinsic cavities of volume ∼85 Å3. Guest encapsulation studies revealed that the cage 1-TD can encapsulate a wide range of guest molecules such as CH2Cl2, CHCl3, CCl4, C6H6, and C6H5F. Interestingly, 1-TD was shown to exhibit a preferential binding of C6H5F and C6H6 over other halogenated guest molecules, as determined from NMR titrations and computational studies.
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Affiliation(s)
- Meghamala Sarkar
- Department of Chemistry, Indian Institute of Science Education and Research (IISER), Pune, Dr. Homi Bhabha Road, Pune 411008, India
| | - Ramamoorthy Boomishankar
- Department of Chemistry, Indian Institute of Science Education and Research (IISER), Pune, Dr. Homi Bhabha Road, Pune 411008, India.,Centre for Energy Science, Indian Institute of Science Education and Research (IISER), Pune, Dr. Homi Bhabha Road, Pune 411008, India
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6
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Bobylev E, de Bruin B, Reek JNH. Catalytic Formation of Coordination-Based Self-Assemblies by Halide Impurities. Inorg Chem 2021; 60:12498-12505. [PMID: 34327986 PMCID: PMC8397307 DOI: 10.1021/acs.inorgchem.1c01714] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2021] [Indexed: 11/29/2022]
Abstract
The dynamics of metal organic polyhedra (MOP) play a crucial role for their application in catalysis and host-guest chemistry and as functional materials. In this contribution, we study the influence of possible contaminations of different metal precursors on the kinetic properties of MOP. Exemplary five different MOP are studied with metal precursors of varying quality. The metal precursors are either obtained from commercial sources or prepared by various literature procedures. Studies into the self-assembly process using 1H NMR and MS analyses were performed on Pt2L4, Pd2L4, Pd6L12, Pd12L24, and Ni4L6 assemblies. Commonly found impurities are shown to play a prominent role guiding selective formation of MOP, as they allow for an escape from otherwise kinetically trapped intermediates. The energy requirement for selective sphere formation is significantly lowered in many examples providing evidence for a catalytic role of halide impurities/additives in the self-assembly process. Furthermore, even though most analytical features such as 1H NMR and MS analyses show identical results for assemblies with different types of metal precursors, the dynamics of formed assemblies differs significantly if slightly less pure starting materials are used. Tiny amounts of halide contaminations make the MOP more dynamic, which can play an important role for substrate diffusion especially if bulky substrates are used. We believe that this study on the influence of impurities (which were shown to be present in some commercial sources) on the kinetic properties of MOP together with procedures of obtaining high purity metal precursors provides important information for future material preparation and provides a better understanding of already known examples.
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Affiliation(s)
- Eduard.
O. Bobylev
- van ’t Hoff Institute for Molecular
Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Bas de Bruin
- van ’t Hoff Institute for Molecular
Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Joost N. H. Reek
- van ’t Hoff Institute for Molecular
Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands
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7
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Tessarolo J, Lee H, Sakuda E, Umakoshi K, Clever GH. Integrative Assembly of Heteroleptic Tetrahedra Controlled by Backbone Steric Bulk. J Am Chem Soc 2021; 143:6339-6344. [PMID: 33900773 PMCID: PMC8154538 DOI: 10.1021/jacs.1c01931] [Citation(s) in RCA: 52] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Indexed: 12/20/2022]
Abstract
A bent fluorenone-based dipyridyl ligand LA reacts with PdII cations to a solvent-dependent dynamic library of [PdnL2n] assemblies, constituted by a [Pd3LA6] ring and a [Pd4LA8] tetrahedron as major components, and a [Pd6LA12] octahedron as minor component. Introduction of backbone steric hindrance in ligand LB allows exclusive formation of the [Pd6LB12] octahedron. Combining equimolar amounts of both ligands results in integrative self-sorting to give an unprecedented [Pd4LA4LB4] heteroleptic tetrahedron. Key to the non-statistical assembly outcome is exploiting the structural peculiarity of the [Pd4L8] tetrahedral topology, where the four lean ligands occupy two doubly bridged edges and the bulky ligands span the four remaining, singly bridged edges. Hence, the system finds a compromise between the entropic drive to form an assembly smaller than the octahedron and the enthalpic prohibition of pairing two bulky ligands on the same edge of the triangular ring. The emission of luminescent LA is maintained in both homoleptic [Pd3LA6] and heteroleptic [Pd4LA4LB4].
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Affiliation(s)
- Jacopo Tessarolo
- Department
of Chemistry and Chemical Biology, TU Dortmund
University, Otto-Hahn-Straße 6, 44227 Dortmund, Germany
| | - Haeri Lee
- Department
of Chemistry, Hannam University, 1646, Yuseong-daero, Yuseong-gu, Daejeon 34054, Republic of Korea
| | - Eri Sakuda
- Department
of Chemistry and Chemical Biology, TU Dortmund
University, Otto-Hahn-Straße 6, 44227 Dortmund, Germany
- Division
of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, 1-14, Bunkyo-machi, Nagasaki 852-8521, Japan
| | - Keisuke Umakoshi
- Division
of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, 1-14, Bunkyo-machi, Nagasaki 852-8521, Japan
| | - Guido H. Clever
- Department
of Chemistry and Chemical Biology, TU Dortmund
University, Otto-Hahn-Straße 6, 44227 Dortmund, Germany
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8
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Li F, Lindoy LF. Metalloligand Strategies for Assembling Heteronuclear Nanocages – Recent Developments. Aust J Chem 2019. [DOI: 10.1071/ch19279] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The use of metalloligands as building blocks for the assembly of metallo-organic cages has received increasing attention over the past two decades or so. In part, the popularity of this approach reflects its stepwise nature that lends itself to the predesigned construction of metallocages and especially heteronuclear metallocages. The focus of the present discussion is on the use of metalloligands for the construction of discrete polyhedral cages, very often incorporating heterometal ions as structural elements. The metalloligand approach uses metal-bound multifunctional ligand building blocks that display predesigned structural properties for coordination to a second metal ion such that the rational design and construction of both homo- and heteronuclear metal–organic cages are facilitated. The present review covers published literature in the area from early 2015 to early 2019.
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