Adsorption of cadmium by live and dead biomass of plant growth-promoting rhizobacteria

Integrated role of biochar and PGPR (Leclercia adecarboxylata HW04) in enhancing cadmium phytoremediation and stress tolerance in Glycine max L

Plant growth-promoting rhizobacteria (PGPR) and biochar (BC) are recognized as effective biological agents for enhancing stress tolerance and mitigating heavy metal toxicity in crops. Therefore, this study aims to investigate the effects of the cadmium (Cd)-resistant PGPR strain Leclercia adecarboxylata HW04 (>4 mM Cd resistance) on soybean plants exposed to 300 μM Cd. HW04 was observed to possess the innate ability to synthesize indole-3-acetic acid and exopolysaccharides, which facilitated the absorption of Cd in the medium. Scanning electron microscopy (SEM) images revealed that HW04 effectively colonized the porous structure of BC. Their combined treatment significantly enhanced photosynthesis and improved the morphological characteristics of soybean plants. Additionally, the Cd content in soybean shoots significantly increased following both the sole or combined treatments of BC and HW04. However, the combined treatments significantly reduced Cd content in the roots and soil by 31% and 47%, respectively. HW04 inoculation alone increased Cd content in the roots by 43.7% while lowering it in the soil by 7.4%. Additionally, the co-application of HW04 and BC significantly enhanced calcium (Ca) and magnesium (Mg) assimilation while promoting Cd/Fe accumulation in soybean shoots. The higher expression of signaling cascade genes, including GmCaMK1 and GmCDPK5 (Ca signaling) and GmMAPK4a and GmMAPK7 (MAP kinase signaling), in the co-applied crops further validate the findings. The increase in abscisic acid levels and the decrease in salicylic acid levels after HW04 and BC application were correlated with enhanced stress tolerance in crops. These findings suggest that the combined application of HW04 and BC could serve as an effective, eco-friendly approach for mitigating heavy metal toxicity in crops and promoting phytoremediation.

Biosorption of chromium by live and dead cells of Bacillus nitratireducens isolated from textile effluent

Bacillus nitratireducens was isolated from textile effluent and showed high tolerance to chromium (Cr), reaching up to a 1000 mg/L MIC value. This research was aimed at utilizing biosorbents from live and dead cells of B. nitratireducens to remove Cr from an aqueous solution. A batch biosorption test was performed, and mechanisms analysis was approached by an adsorption-desorption test, SEM-EDS, and FTIR analysis. Cr removal by dead cells in 25, 50, and 100 mg/L of Cr were 58.99 ± 0.7%, 69.8 ± 0.2%, and 82.87 ± 0.11%, respectively, while that by live cells was 73.08 ± 1.9%, 80.27 ± 6.33%, and 86.17 ± 1.93%, respectively. Live cells showed significantly higher Cr removal and adsorption capacities as compared to dead cells. In all concentrations, absorption contributed more than adsorption to the Cr removal by both live and dead cells. Absorption of Cr was subjected to occur due to passive mechanisms in dead cells while involving some active mechanisms in live cells. SEM-EDS confirmed the detection of Cr on the cell surface, while FTIR revealed the shifting of some peaks after the biosorption test, suggesting interactions between Cr and functional groups. Further TEM analysis is suggested to be conducted as a future approach to reveal the inner structure of cells and confirm the involvement of absorption mechanisms.

Enhancing soil health to minimize cadmium accumulation in agro-products: the role of microorganisms, organic matter, and nutrients

Agro-products accumulate Cd from the soil and are the main source of Cd in humans. Their use must therefore be minimized using effective strategies. Large soil beds containing low-to-moderate Cd-contamination are used to produce agro-products in many developing countries to keep up with the demand of their large populations. Improving the health of Cd-contaminated soils could be a cost-effective method for minimizing Cd accumulation in crops. In this review, the latest knowledge on the physiological and molecular mechanisms of Cd uptake and translocation in crops is presented, providing a basis for developing advanced technologies for producing Cd-safe agro-products. Inoculation of plant growth-promoting rhizobacteria and arbuscular mycorrhizal fungi, application of organic matter, essential nutrients, beneficial elements, regulation of soil pH, and water management are efficient techniques used to decrease soil Cd bioavailability and inhibiting the uptake and accumulation of Cd in crops. In combination, these strategies for improving soil health are environmentally friendly and practical for reducing Cd accumulation in crops grown in lightly to moderately Cd-contaminated soil.

The role of afforestation with diverse woody species in enhancing and restructuring the soil microenvironment in polymetallic coal gangue dumps

To elucidate the effects of long-term (20 years) afforestation with different woody plant species on the soil microenvironment in coal gangue polymetallic contaminated areas. This study analyzed the soil physicochemical properties, soil enzyme activities, soil ionophore, bacterial community structure, soil metabolite, and their interaction relationships at different vertical depths. Urease, sucrase, and acid phosphatase activities in the shallow soil layers increased by 4.70-7.45, 3.83-7.64, and 3.27-4.85 times, respectively, after the restoration by the four arboreal plant species compared to the plant-free control soil. Additionally, it reduced the content of available elements in the soil and alleviated the toxicity stress for Cd, Ni, Co, Cr, As, Fe, Cu, U, and Pb. After the long-term restoration of arboreal plants, the richness and Shannon indices of soil bacteria significantly increased by 4.77-23.81% and 2.93-7.93%, respectively, broadening the bacterial ecological niche. The bacterial community structure shaped by different arboreal plants exhibited high similarity, but the community similarity decreased with increasing vertical depth. Soils Zn, U, Sr, S, P, Mg, K, Fe, Cu, Ca, Ba, and pH were identified as important influencing factors for the community structure of Sphingomonas, Pseudarthrobacter, Nocardioides, and Thiobacillus. The metabolites such as sucrose, raffinose, L-valine, D-fructose 2, 6-bisphosphate, and oxoglutaric acid were found to have the greatest effect on the bacterial community in the rhizosphere soils for arboreal plants. The results of the study demonstrated that long-term planting for woody plants in gangue dumps could regulate microbial abundance and symbiotic patterns through the accumulation of rhizosphere metabolites in the soil, increase soil enzyme activity, reduce heavy metal levels, and improve the soil environment in coal gangue dumps.

Mechanisms of low cadmium accumulation in crops: A comprehensive overview from rhizosphere soil to edible parts

Cadmium (Cd) is a toxic heavy metal often found in soil and agricultural products. Due to its high mobility, Cd poses a significant health risk when absorbed by crops, a crucial component of the human diet. This absorption primarily occurs through roots and leaves, leading to Cd accumulation in edible parts of the plant. Our research aimed to understand the mechanisms behind the reduced Cd accumulation in certain crop cultivars through an extensive review of the literature. Crops employ various strategies to limit Cd influx from the soil, including rhizosphere microbial fixation and altering root cell metabolism. Additional mechanisms include membrane efflux, specific transport, chelation, and detoxification, facilitated by metalloproteins such as the natural resistance-associated macrophage protein (Nramp) family, heavy metal P-type ATPases (HMA), zinc-iron permease (ZIP), and ATP-binding cassette (ABC) transporters. This paper synthesizes differences in Cd accumulation among plant varieties, presents methods for identifying cultivars with low Cd accumulation, and explores the unique molecular biology of Cd accumulation. Overall, this review provides a comprehensive resource for managing agricultural lands with lower contamination levels and supports the development of crops engineered to accumulate minimal amounts of Cd.

Adsorption of Cd (II) by a novel living and non-living Cupriavidus necator GX_5: optimization, equilibrium and kinetic studies

Biosorbents have been extensively studied for heavy metal adsorption due to their advantages of low cost and high efficiency. In the study, the living and non-living biomass of Cupriavidus necator GX_5 previously isolated were evaluated for their adsorption capacity and/or removal efficiency for Cd (II) through batch experiments, SEM and FT-IR investigations. The maximum removal efficiency rates for the live and dead biomass were 60.51% and 78.53%, respectively, at an optimum pH of 6, a dosage of 1 g/L and an initial Cd (II) concentration of 5 mg/L. The pseudo-second-order kinetic model was more suitable for fitting the experimental data, indicating that the rate-limiting step might be chemisorption. The Freundlich isotherm model fit better than the Langmuir isotherm model, implying that the adsorption process of both biosorbents was heterogeneous. FT-IR observation reflected that various functional groups were involved in Cd (II) adsorption: -OH, -NH, C=O, C-O and C-C groups for the living biomass and -OH, -NH, C-H, C = O, C-N and N-H groups for the dead biomass. Our results imply that non-living biosorbents have a higher capacity and stronger strength for absorbing Cd (II) than living biomass. Therefore, we suggest that dead GX_5 is a promising adsorbent and can be used in Cd (II)-contaminated environments.

Cadmium stimulated cooperation between bacterial endophytes and plant intrinsic detoxification mechanism in Lonicera japonica thunb

Due to the intimate association between plant physiology and metabolism, the internal colonizing microbe (endophytes) community must be adjusted to support plant productivity in response to cell damage in plants under stress. However, how endophytes coordinate their activities with plant intrinsic mechanisms such as antioxidative systems and detoxification pathways during Cd accumulation remains unknown. In this hydroponic pot study, we investigated how exposure of Lonicera japonica. thunb. to different levels of Cd (0.5, 2.5, 5, 10, and 20 mg kg^-1) affected plant growth, metabolic pathways, and endophyte community structure and function. Although Cd accumulation increased at 5 mg kg^-1 Cd, the biomass and height of L. japonica increased in association with elevated endophyte-involved plant detoxification activities. Endophytes, such as Sphingomonas, Klenkia, and Modestobacter, expressed major antioxidative regulators (superoxide dismutase and ascorbate acid) to detoxify Cd in L. japonica. Furthermore, L. japonica and its endophytes synergistically regulated the toxic effects of Cd accumulation via multiple plant metabolic defensive pathways to increase resistance to metal-induced stress.

Investigation of cadmium and nickel biosorption by Pseudomonas sp. via response surface methodology

The environmental contamination of heavy metals has grown over the last several decades along with global industrialization and now constitutes a serious threat to human health. In this research, high cadmium (Cd) and nickel (Ni) resistant bacteria that were chosen for heavy metal biosorption were isolated from the Industries Factory in Sari, Mazandaran, Iran. Pseudomonas aeruginosa was recognized as the isolated bacterium based on its morphological, physiological, biochemical, antibiotic resistance testing, and 16S rRNA sequences. The bacteria had the highest concentrations of resistance to Cd (up to 1600 ppm) and Ni, according to the Minimum Inhibition Concentration (MIC) test (up to 2000 ppm). Single-factor studies in single and binary systems were used to examine the effects of temperature, contact duration, pH value, starting Cd and Ni concentration, and biomass dose on the Cd and Ni adsorption by P. aeruginosa. The Cd and Ni biosorption in binary solutions was optimized using the response surface methodology (RSM) based on Central Composite Design (CCD). The investigation revealed that at pH 7.0, 45 °C, and 1.5 gL^-1 biomass dose, the greatest biosorption efficiency for Cd and Ni was 92.43 percent and 88.45 percent, respectively. According to the adsorption of Cd and Ni in urban water, under these similarly extreme conditions, Cd adsorption drops to 54% and Ni to 60%. Analysis Potential functional groups involving interactions between cells and metal ions were identified using Fourier transform infrared spectroscopy (FTIR). Different compounds and heavy metal ions were found to have been adsorbed to the surface of the biosorbent by scanning electron microscopy and energy-dispersive X-ray spectroscopy (SEM/EDS). It was determined that P. aeruginosa had a high rate of Cd and Ni adsorption and that variations in pH level had a greater impact than other parameters. The findings imply that P. aeruginosa biomass may be an effective, economical, and environmentally friendly method for removing Cd and Ni from contaminated settings. It also has a reasonable capacity for biosorption in both a natural environment and a laboratory environment.

Quantification of the antagonistic and synergistic effects of Pb2+, Cu2+, and Zn2+ bioaccumulation by living Bacillus subtilis biomass using XGBoost and SHAP

Bioaccumulation and adsorption are efficient methods for removing heavy metal ions (HMIs) from aqueous environments. However, methods to quantifiably characterize the removal selectivity for co-existing HMIs are limited. In this study, we applied Shapley additive explanations (SHAP) following extreme gradient boosting (XGBoost) modeling, to generate SHAP values. We used these values to create an affinity interference index (AII) that quantitatively represented the interference between metal ions in a multi-metal bioaccumulation system. The selectivity for simultaneous bioaccumulation of Pb²⁺, Cu²⁺, and Zn²⁺ by living Bacillus subtilis biomass was then characterized as a proof of concept. The AII indicated that the bioaccumulation of Zn²⁺ was more strongly inhibited by Pb²⁺/Cu²⁺ (AII = 1) than that of Pb²⁺/Cu²⁺ by Zn²⁺. Moreover, the presence of Zn²⁺ promoted the bioaccumulation of Pb²⁺ (AII = 0.39), which was confirmed in further experiments where the bioaccumulation of Pb²⁺ (300 μM) was increased by 38% with Zn²⁺ (300 μM). This study demonstrated that the combination of XGBoost and SHAP is effective in the quantifiable characterization of the antagonistic and synergistic effects in a multi-metal simultaneous bioaccumulation system. This method could also be generalized to similar tasks for analyzing the selectivity effects in a multi-component system.

Improvement of Zn (II) and Cd (II) Biosorption by Priestia megaterium PRJNA526404 Isolated from Agricultural Waste Water

Heavy metals are considered as dangerous pollutants even in relatively low concentrations. Biosorption is an ecofriendly technology that uses microbial biomasses for adsorbing heavy metals from wastewater on their surfaces based on physicochemical pathways. Ten agricultural wastewater samples were collected from different sites in Sohag Governorate, Egypt. One hundred and nineteen zinc and cadmium-resistant bacterial isolates were recovered from the water samples. Interestingly, the isolate R1 was selected as the most resistant to Zn²⁺ and Cd²⁺. This isolate was morphologically and biochemically characterized and identified by sequencing of 16S rRNA gene as Priestia megaterium, and then deposited in the GenBank database under the accession number PRJNA526404. Studying the effects of pH and contact time on the biosorption process revealed that the maximum biosorption was achieved within 50 min at pH 7 and 8 for Zn²⁺ and Cd²⁺, respectively, by the living and lyophelized biomass of Priestia megaterium PRJNA526404. The preliminary characterization of the main chemical groups present on the cell wall, which are responsible for heavy metal biosorption, was performed by Infrared analysis (IR). Kinetics studies revealed that data were fitted towards the models hypothesized by Langmuir and Freundlich isotherm equations. The maximum capacity values (q_max) for biosorption of zinc and cadmium reached by using living and lyophelized biomass were 196.08; 227.27 and 178.57; 212.777 mg/g, respectively, and it was indicated that lyophilization improved efficiency of the biomass to heavy metals compared to living cells. The results indicated that Priestia megaterium PRJNA526404 had good application prospect in cadmium and zinc water remediation.

Treatment of heavy metals containing wastewater using biodegradable adsorbents: A review of mechanism and future trends

The direct disposal of industrial effluents into the aquatic system is considered as a significant environmental hazard in many countries. Because of poisonous chemicals, substantial volumes of effluent release, as well as the lack of adequate of conventional treatment methodologies, industrial effluent treatment is extremely difficult. Numerous researchers have been interested in adsorption technology for its high efficiency of pollutant removal, low cost, and abundantly available adsorbent. Various adsorbent materials, both natural and modified form, have been widely used for the removal of toxic contaminants from industrial effluent. This paper highlights recent advancements in multiple modification types to functionalize the adsorbent material, resulting in higher adsorption capacity on various toxic pollutants. This review provides an overview of the adsorption mechanism and parameters (pH, adsorbent dosage, initial concentration, temperature and interaction time), which influencing the removal efficiency of adsorbents. Furthermore, this review compiles the desorption study to recover the adsorbent and improve the cycle's financial viability. This review provides a concise overview of the future directions and outlook in the framework of adsorbent application for industrial wastewater treatment.

Cadmium Immobilization in the Rhizosphere and Plant Cellular Detoxification: Role of Plant-Growth-Promoting Rhizobacteria as a Sustainable Solution

Food is the major cadmium (Cd)-exposure pathway from agricultural soils to humans and other living entities and must be reduced in an effective way. A plant can select beneficial microbes, like plant-growth-promoting rhizobacteria (PGPR), depending upon the nature of root exudates in the rhizosphere, for its own benefits, such as plant growth promotion as well as protection from metal toxicity. This review intends to seek out information on the rhizo-immobilization of Cd in polluted soils using the PGPR along with plant nutrient fertilizers. This review suggests that the rhizo-immobilization of Cd by a combination of PGPR and nanohybrid-based plant nutrient fertilizers would be a potential and sustainable technology for phytoavailable Cd immobilization in the rhizosphere and plant cellular detoxification, by keeping the plant nutrition flow and green dynamics of plant nutrition and boosting the plant growth and development under Cd stress.

Removal of Lead(II) from Synthetic Wastewater by Lavandula pubescens Decne Biosorbent: Insight into Composition–Adsorption Relationship

In this work, the widely-abundant, cheap, wild plant Lavandula pubescens Decne was evaluated as an adsorbent for removing Pb(II) ions from wastewater. The chemical composition of the plant was partially isolated and characterized by the corresponding techniques, including gas chromatography–mass spectrometry, gas liquid chromatography, and FTIR spectroscopy. The adsorption capacity of the dried plant material for Pb(II) ions increased with increasing contact time, initial ion concentration, and temperature, while it decreased with increasing adsorbent dosage. The optimum condition for Pb(II) adsorption was determined as 550 mg/L initial metal concentration, pH ≤ 7, and 90 min of contact. The best fit for Pb(II) adsorption isotherms was the linear form of the Freundlich model; however, the maximum capacity indicated by Langmuir was 91.32 mg/g. The experimental data fit better the pseudo-second-order kinetic model (R2 = 0.969), suggesting chemisorption process. Thermodynamic data revealed an endothermic, nonspontaneous, and adsorption process favored at higher concentrations.

Bioaugmentation of Vibrio alginolyticus in phytoremediation of aluminium-contaminated soil using Scirpus grossus and Thypa angustifolia

This research analyses the performance of bacteria-assisted phytoremediation of aluminium (Al)-contaminated soil using native Indonesian plants namely, Scirpus grossus and Thypa angustifolia. A range finding test (RFT) was carried out for 14 days to obtain the tolerable Al concentration for both plants. A total of 2% and 5% (v/v) of Vibrio alginolyticus were bioaugmented during the 28-day phytoremediation test to enhance the overall Al removal. Result of the RFT showed that both plants can tolerate up to 500 mg/kg Al concentration. The addition of V. alginolyticus to the reactors resulted in a significant increment of Al removal from the contaminated soil (p < 0.05). Such addition of V. alginolyticus increased the Al removal by up to 14.0% compared with that without-bacteria addition. The highest Al removal was obtained for S. grossus with 5% V. alginolyticus with an efficiency of 35.1% from 500 mg/kg initial concertation. T. angustifolia with 500 mg/kg initial concentration showed the highest removal of 26.2% by the addition of 5% V. alginolyticus. The increase of Al removal by the bioaugmentation of V. alginolyticus was due to the interaction in the plant's rhizosphere. Exudates of both plants provided a good environment for bacteria to live in the root area. Meanwhile, the bacteria increased the bioavailability of Al to be further extracted by plants. Certain mechanisms, such as rhizostabilisation, phytostimulation and phytoextraction, were considered to be the main processes that occurred during the treatment. S. grossus and T. angustifolia displayed promising ability to act as Al hyperaccumulators with bioaccumulation factor values up to 5.308 and 3.068, respectively. Development of the design of the ex-situ soil phytoremediation reactors is suggested as a future research direction because it can significantly enhance the current obtained finding.

Simultaneous cleanup of Reactive Black 5 and cadmium by a desert soil bacterium

Multi-contaminated industrial wastewaters pose serious environmental risks due to high toxicity and non-biodegradability. The work reported here evaluated the ability of Pseudomonas aeruginosa strain Gb30 isolated from desert soil to simultaneously remove cadmium (Cd) and Reactive Black 5 (RB5), both common contaminants in various industrial effluents. The strain was able to grow normally and decolorize 50 mg L^-1 RB5 within 24 h of incubation in the presence of 0.629 m mol L^-1 of Cd²⁺. In order to evaluate strain performance in RB5 detoxification, a cytotoxicity test using Human Embryonic Kidney cells (HEK293) was used. Cadmium removal from culture media was determined using atomic adsorption. Even in presence of (0.115 + 0.157 + 0.401 + 0.381) m mol L^-1, respectively, of Cr⁶⁺, Cd²⁺, Cu²⁺ and Zn²⁺ in the growth medium, strain Gb30 successfully removed 35% of RB5 and 44%, 36%, 59% and 97%, respectively, of introduced Zn²⁺, Cu²⁺, Cr⁶⁺ and Cd²⁺, simultaneously. In order to understand the mechanism of Cd removal used by P. aeruginosa strain Gb30, biosorption and bioaccumulation abilities were examined. The strain was preferentially biosorbing Cd on the cell surface, as opposed to intracellular bioaccumulation. Microscopic investigations using AFM, SEM and FTIR analysis of the bacterial biomass confirmed the presence of various structural features, which enabled the strain to interact with metal ions. The study suggests that Pseudomonas aeruginosa Gb30 is a potential candidate for bioremediation of textile effluents in the presence of complex dye-metal contamination.