1
|
Reuter T, Zorn D, Naumann R, Klett J, Förster C, Heinze K. A Tetracarbene Iron(II) Complex with a Long-lived Triplet Metal-to-Ligand Charge Transfer State due to a Triplet-Triplet Barrier. Angew Chem Int Ed Engl 2024; 63:e202406438. [PMID: 38946322 DOI: 10.1002/anie.202406438] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2024] [Revised: 06/28/2024] [Accepted: 06/28/2024] [Indexed: 07/02/2024]
Abstract
Mixed N-heterocyclic carbene (NHC) / pyridyl iron(II) complexes have attracted a great deal of attention recently because of their potential as photocatalysts and light sensitizers made from Earth-abundant elements. The most decisive challenge for their successful implementation is the lifetime of the lowest triplet metal-to-ligand charge transfer state (3MLCT), which typically decays via a triplet metal-centered (3MC) state back to the ground state. We reveal by variable-temperature ultrafast transient absorption spectroscopy that the tripodal iron(II) bis(pyridine) complex isomers trans- and cis-[Fe(pdmi)2]2+ with four NHC donors show 3MLCT→3MC population transfers with very different barriers and rationalize this by computational means. While trans-[Fe(pdmi)2]2+ possesses an unobservable activation barrier, the cis isomer exhibits a barrier of 492 cm-1, which leads to a nanosecond 3MLCT lifetime at 77 K. The kinetic and quantum chemical data were analyzed in the context of semi-classical Marcus theory revealing a high reorganization energy and small electronic coupling between the two triplet states. This highlights the importance of detailed structural control and kinetic knowledge for the rational design of photosensitizers from first row transition metals such as iron.
Collapse
Affiliation(s)
- Thomas Reuter
- Department of Chemistry, Johannes Gutenberg University Mainz, Duesbergweg 10-14, 55128, Mainz, Germany
| | - Dimitri Zorn
- Department of Chemistry, Johannes Gutenberg University Mainz, Duesbergweg 10-14, 55128, Mainz, Germany
| | - Robert Naumann
- Department of Chemistry, Johannes Gutenberg University Mainz, Duesbergweg 10-14, 55128, Mainz, Germany
| | - Jan Klett
- Department of Chemistry, Johannes Gutenberg University Mainz, Duesbergweg 10-14, 55128, Mainz, Germany
| | - Christoph Förster
- Department of Chemistry, Johannes Gutenberg University Mainz, Duesbergweg 10-14, 55128, Mainz, Germany
| | - Katja Heinze
- Department of Chemistry, Johannes Gutenberg University Mainz, Duesbergweg 10-14, 55128, Mainz, Germany
| |
Collapse
|
2
|
Alías-Rodríguez M, Huix-Rotllant M. Control of Iron(II)-Tris(2,2'-Bipyridine) Light-Induced Excited-State Trapping via External Electromagnetic Fields. Chemphyschem 2024; 25:e202400471. [PMID: 38797713 DOI: 10.1002/cphc.202400471] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2024] [Revised: 05/22/2024] [Accepted: 05/22/2024] [Indexed: 05/29/2024]
Abstract
Light-induced excited spin-state trapping reactions in iron pyridinic complexes allow the iron's low-to-high spin transition in a sub-picosecond timescale. Employing a recently developed model for [Fe(2,2'-bipyridine)3]2+ photochemical spin-crossover reaction in conjunction with quantum wavepacket dynamics, we explore the possibility of controlling the reaction through external electromagnetic fields, aiming at stabilizing the initial metal-to-ligand charge transfer states. We show that simple Gaussian-shaped electromagnetic fields have a minor effect on the population kinetics. However, introducing vibrationally excited initial wavepacket representations allows for maintaining the population trapped in the metal-to-ligand charge transfer states. Using optimal control theory, we propose an electromagnetic field shape that increases the lifetime of metal-to-ligand charge transfer states. These results open the route for controlling the iron photochemistry through the action of external electric fields.
Collapse
|
3
|
Burke JH, Bae DY, Wallick RF, Dykstra CP, Rossi TC, Smith LE, Leahy CA, Schaller RD, Mirica LM, Vura-Weis J, van der Veen RM. High-Spin State of a Ferrocene Electron Donor Revealed by Optical and X-ray Transient Absorption Spectroscopy. J Am Chem Soc 2024; 146:21651-21663. [PMID: 39051542 PMCID: PMC11311227 DOI: 10.1021/jacs.4c05646] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2024] [Revised: 07/07/2024] [Accepted: 07/09/2024] [Indexed: 07/27/2024]
Abstract
Ferrocene is one of the most common electron donors, and mapping its ligand-field excited states is critical to designing donor-acceptor (D-A) molecules with long-lived charge transfer states. Although 3(d-d) states are commonly invoked in the photophysics of ferrocene complexes, mention of the high-spin 5(d-d) state is scarce. Here, we provide clear evidence of 5(d-d) formation in a bimetallic D-A molecule, ferrocenyl cobaltocenium hexafluorophosphate ([FcCc]PF6). Femtosecond optical transient absorption (OTA) spectroscopy reveals two distinct electronic excited states with 30 and 500 ps lifetimes. Using a combination of ultraviolet, visible, near-infrared, and short-wave infrared probe pulses, we capture the spectral features of these states over an ultrabroadband range spanning 320 to 2200 nm. Time-dependent density functional theory (DFT) calculations of the lowest triplet and quintet states, both primarily Fe(II) (d-d) in character, qualitatively agree with the experimental OTA spectra, allowing us to assign the 30 ps state as the 3(d-d) state and the 500 ps state as the high-spin 5(d-d) state. To confirm the ferrocene-centered high-spin character of the 500 ps state, we performed X-ray transient absorption (XTA) spectroscopy at the Fe and Co K edges. The Fe K-edge XTA spectrum at 150 ps shows a red shift of the absorption edge that is consistent with an Fe(II) high-spin state, as supported by ab initio calculations. The transient signal detected at the Co K-edge is 50× weaker, confirming the ferrocene-centered character of the excited state. Fitting of the transient extended X-ray absorption fine structure region yields an Fe-C bond length increase of 0.25 ± 0.1 Å in the excited state, as expected for the high-spin state based on DFT. Altogether, these results demonstrate that the high-spin state of ferrocene should be considered when designing donor-acceptor assemblies for photocatalysis and photovoltaics.
Collapse
Affiliation(s)
- John H. Burke
- Department
of Chemistry, University of Illinois at
Urbana−Champaign, Urbana, Illinois 61801, United States
| | - Dae Young Bae
- Department
of Chemistry, University of Illinois at
Urbana−Champaign, Urbana, Illinois 61801, United States
| | - Rachel F. Wallick
- Department
of Chemistry, University of Illinois at
Urbana−Champaign, Urbana, Illinois 61801, United States
| | - Conner P. Dykstra
- Department
of Chemistry, University of Illinois at
Urbana−Champaign, Urbana, Illinois 61801, United States
| | - Thomas C. Rossi
- Department
of Atomic-Scale Dynamics in Light-Energy Conversion, Helmholtz-Zentrum Berlin für Materialien und Energie, Berlin 14109, Germany
| | - Laura E. Smith
- Department
of Chemistry, University of Illinois at
Urbana−Champaign, Urbana, Illinois 61801, United States
| | - Clare A. Leahy
- Department
of Chemistry, University of Illinois at
Urbana−Champaign, Urbana, Illinois 61801, United States
| | - Richard D. Schaller
- Department
of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
- Center
for Nanoscale Materials, Argonne National
Laboratory, Lemont, Illinois 60439, United States
| | - Liviu M. Mirica
- Department
of Chemistry, University of Illinois at
Urbana−Champaign, Urbana, Illinois 61801, United States
| | - Josh Vura-Weis
- Department
of Chemistry, University of Illinois at
Urbana−Champaign, Urbana, Illinois 61801, United States
| | - Renske M. van der Veen
- Department
of Chemistry, University of Illinois at
Urbana−Champaign, Urbana, Illinois 61801, United States
- Department
of Atomic-Scale Dynamics in Light-Energy Conversion, Helmholtz-Zentrum Berlin für Materialien und Energie, Berlin 14109, Germany
- Institute
of Optics and Atomic Physics, Technical
University of Berlin, 10623 Berlin, Germany
| |
Collapse
|
4
|
Nowakowski M, Huber-Gedert M, Elgabarty H, Kalinko A, Kubicki J, Kertmen A, Lindner N, Khakhulin D, Lima FA, Choi TK, Biednov M, Schmitz L, Piergies N, Zalden P, Kubicek K, Rodriguez-Fernandez A, Salem MA, Canton SE, Bressler C, Kühne TD, Gawelda W, Bauer M. Ultrafast Two-Color X-Ray Emission Spectroscopy Reveals Excited State Landscape in a Base Metal Dyad. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024:e2404348. [PMID: 39099343 DOI: 10.1002/advs.202404348] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2024] [Revised: 07/01/2024] [Indexed: 08/06/2024]
Abstract
Effective photoinduced charge transfer makes molecular bimetallic assemblies attractive for applications as active light-induced proton reduction systems. Developing competitive base metal dyads is mandatory for a more sustainable future. However, the electron transfer mechanisms from the photosensitizer to the proton reduction catalyst in base metal dyads remain so far unexplored. A Fe─Co dyad that exhibits photocatalytic H2 production activity is studied using femtosecond X-ray emission spectroscopy, complemented by ultrafast optical spectroscopy and theoretical time-dependent DFT calculations, to understand the electronic and structural dynamics after photoexcitation and during the subsequent charge transfer process from the FeII photosensitizer to the cobaloxime catalyst. This novel approach enables the simultaneous measurement of the transient X-ray emission at the iron and cobalt K-edges in a two-color experiment. With this methodology, the excited state dynamics are correlated to the electron transfer processes, and evidence of the Fe→Co electron transfer as an initial step of proton reduction activity is unraveled.
Collapse
Affiliation(s)
- Michal Nowakowski
- Chemistry Department and Center for Sustainable Systems Design (CSSD), Faculty of Science, Paderborn University, Warburger Straße 100, 33098, Paderborn, Germany
| | - Marina Huber-Gedert
- Chemistry Department and Center for Sustainable Systems Design (CSSD), Faculty of Science, Paderborn University, Warburger Straße 100, 33098, Paderborn, Germany
| | - Hossam Elgabarty
- Chemistry Department and Center for Sustainable Systems Design (CSSD), Faculty of Science, Paderborn University, Warburger Straße 100, 33098, Paderborn, Germany
| | - Aleksandr Kalinko
- Deutsches Elektronen-Synchrotron DESY, 22607, Notkestr. 85, Hamburg, Germany
| | - Jacek Kubicki
- Faculty of Physics, Adam Mickiewicz University, Poznań, Uniwersytetu Poznańskiego 2, Poznań, 61-614, Poland
| | - Ahmet Kertmen
- Faculty of Physics, Adam Mickiewicz University, Poznań, Uniwersytetu Poznańskiego 2, Poznań, 61-614, Poland
| | - Natalia Lindner
- Faculty of Physics, Adam Mickiewicz University, Poznań, Uniwersytetu Poznańskiego 2, Poznań, 61-614, Poland
| | - Dmitry Khakhulin
- European X-Ray Free-Electron Laser Facility GmbH, 22869, Holzkoppel 4, Schenefeld, Germany
| | - Frederico A Lima
- European X-Ray Free-Electron Laser Facility GmbH, 22869, Holzkoppel 4, Schenefeld, Germany
| | - Tae-Kyu Choi
- European X-Ray Free-Electron Laser Facility GmbH, 22869, Holzkoppel 4, Schenefeld, Germany
- PAL-XFEL, Jigok-ro 127-80, Pohang, 37673, Republic of Korea
| | - Mykola Biednov
- European X-Ray Free-Electron Laser Facility GmbH, 22869, Holzkoppel 4, Schenefeld, Germany
| | - Lennart Schmitz
- Chemistry Department and Center for Sustainable Systems Design (CSSD), Faculty of Science, Paderborn University, Warburger Straße 100, 33098, Paderborn, Germany
| | - Natalia Piergies
- Institute of Nuclear Physics Polish Academy of Sciences, Kraków, 31-342, Poland
| | - Peter Zalden
- European X-Ray Free-Electron Laser Facility GmbH, 22869, Holzkoppel 4, Schenefeld, Germany
| | - Katerina Kubicek
- European X-Ray Free-Electron Laser Facility GmbH, 22869, Holzkoppel 4, Schenefeld, Germany
- The Hamburg Centre for Ultrafast Imaging, 22761, Luruper Chaussee 149, Hamburg, Germany
- Fachbereich Physik, Universität Hamburg, 22607, Notkestraße 9-11, Hamburg, Germany
| | | | - Mohammad Alaraby Salem
- Chemistry Department and Center for Sustainable Systems Design (CSSD), Faculty of Science, Paderborn University, Warburger Straße 100, 33098, Paderborn, Germany
| | - Sophie E Canton
- Department of Chemistry, Technical University of Denmark, Kongens Lyngby, DK-2800, Denmark
| | - Christian Bressler
- European X-Ray Free-Electron Laser Facility GmbH, 22869, Holzkoppel 4, Schenefeld, Germany
- The Hamburg Centre for Ultrafast Imaging, 22761, Luruper Chaussee 149, Hamburg, Germany
- Fachbereich Physik, Universität Hamburg, 22607, Notkestraße 9-11, Hamburg, Germany
| | - Thomas D Kühne
- Chemistry Department and Center for Sustainable Systems Design (CSSD), Faculty of Science, Paderborn University, Warburger Straße 100, 33098, Paderborn, Germany
- Center for Advanced Systems Understanding (CASUS), Helmholtz-Zentrum Dresden-Rossendorf, 02826, Untermarkt 20, Görlitz, Germany
- Institute of Artificial Intelligence, Chair of Computational System Sciences, Technische Universität Dresden, 01187, Helmholtzstr. 10, Dresden, Germany
| | - Wojciech Gawelda
- Faculty of Physics, Adam Mickiewicz University, Poznań, Uniwersytetu Poznańskiego 2, Poznań, 61-614, Poland
- IMDEA Nanociencia, Calle Faraday 9, Madrid, 28049, Spain
- Departamento de Química, Universidad Autónoma de Madrid, Campus Cantoblanco, Madrid, 28047, Spain
| | - Matthias Bauer
- Chemistry Department and Center for Sustainable Systems Design (CSSD), Faculty of Science, Paderborn University, Warburger Straße 100, 33098, Paderborn, Germany
| |
Collapse
|
5
|
Reinhard ME, Sidhu BK, Lozada IB, Powers-Riggs N, Ortiz RJ, Lim H, Nickel R, Lierop JV, Alonso-Mori R, Chollet M, Gee LB, Kramer PL, Kroll T, Raj SL, van Driel TB, Cordones AA, Sokaras D, Herbert DE, Gaffney KJ. Time-Resolved X-ray Emission Spectroscopy and Synthetic High-Spin Model Complexes Resolve Ambiguities in Excited-State Assignments of Transition-Metal Chromophores: A Case Study of Fe-Amido Complexes. J Am Chem Soc 2024; 146:17908-17916. [PMID: 38889309 DOI: 10.1021/jacs.4c02748] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/20/2024]
Abstract
To fully harness the potential of abundant metal coordination complex photosensitizers, a detailed understanding of the molecular properties that dictate and control the electronic excited-state population dynamics initiated by light absorption is critical. In the absence of detectable luminescence, optical transient absorption (TA) spectroscopy is the most widely employed method for interpreting electron redistribution in such excited states, particularly for those with a charge-transfer character. The assignment of excited-state TA spectral features often relies on spectroelectrochemical measurements, where the transient absorption spectrum generated by a metal-to-ligand charge-transfer (MLCT) electronic excited state, for instance, can be approximated using steady-state spectra generated by electrochemical ligand reduction and metal oxidation and accounting for the loss of absorptions by the electronic ground state. However, the reliability of this approach can be clouded when multiple electronic configurations have similar optical signatures. Using a case study of Fe(II) complexes supported by benzannulated diarylamido ligands, we highlight an example of such an ambiguity and show how time-resolved X-ray emission spectroscopy (XES) measurements can reliably assign excited states from the perspective of the metal, particularly in conjunction with accurate synthetic models of ligand-field electronic excited states, leading to a reinterpretation of the long-lived excited state as a ligand-field metal-centered quintet state. A detailed analysis of the XES data on the long-lived excited state is presented, along with a discussion of the ultrafast dynamics following the photoexcitation of low-spin Fe(II)-Namido complexes using a high-spin ground-state analogue as a spectral model for the 5T2 excited state.
Collapse
Affiliation(s)
- Marco E Reinhard
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Baldeep K Sidhu
- Department of Chemistry and the Manitoba Institute for Materials, University of Manitoba, 144 Dysart Rd, Winnipeg, Manitoba R3T 2N2, Canada
| | - Issiah B Lozada
- Department of Chemistry and the Manitoba Institute for Materials, University of Manitoba, 144 Dysart Rd, Winnipeg, Manitoba R3T 2N2, Canada
| | - Natalia Powers-Riggs
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Robert J Ortiz
- Department of Chemistry and the Manitoba Institute for Materials, University of Manitoba, 144 Dysart Rd, Winnipeg, Manitoba R3T 2N2, Canada
| | - Hyeongtaek Lim
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Rachel Nickel
- Department of Physics and Astronomy, University of Manitoba, 31A Sifton Rd, Winnipeg, Manitoba R3T 2N2, Canada
| | - Johan van Lierop
- Department of Physics and Astronomy, University of Manitoba, 31A Sifton Rd, Winnipeg, Manitoba R3T 2N2, Canada
| | - Roberto Alonso-Mori
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Matthieu Chollet
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Leland B Gee
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Patrick L Kramer
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Thomas Kroll
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Sumana L Raj
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Tim B van Driel
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Amy A Cordones
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Dimosthenis Sokaras
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - David E Herbert
- Department of Chemistry and the Manitoba Institute for Materials, University of Manitoba, 144 Dysart Rd, Winnipeg, Manitoba R3T 2N2, Canada
| | - Kelly J Gaffney
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| |
Collapse
|
6
|
Reinhard M, Kunnus K, Ledbetter K, Biasin E, Zederkof DB, Alonso-Mori R, van Driel TB, Nelson S, Kozina M, Borkiewicz OJ, Lorenc M, Cammarata M, Collet E, Sokaras D, Cordones AA, Gaffney KJ. Observation of a Picosecond Light-Induced Spin Transition in Polymeric Nanorods. ACS NANO 2024; 18:15468-15476. [PMID: 38833689 DOI: 10.1021/acsnano.3c10042] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2024]
Abstract
Spin transition (ST) materials are attractive for developing photoswitchable devices, but their slow material transformations limit device applications. Size reduction could enable faster switching, but the photoinduced dynamics at the nanoscale remains poorly understood. Here, we report a femtosecond optical pump multimodal X-ray probe study of polymeric nanorods. Simultaneously tracking the ST order parameter with X-ray emission spectroscopy and structure with X-ray diffraction, we observe photodoping of the low-spin-lattice within ∼150 fs. Above a ∼16% photodoping threshold, the transition to the high-spin phase occurs following an incubation period assigned to vibrational energy redistribution within the nanorods activating the molecular spin switching. Above ∼60% photodoping, the incubation period disappears, and the transition completes within ∼50 ps, preceded by the elastic nanorod expansion in response to the photodoping. These results support the feasibility of ST material-based GHz optical switching applications.
Collapse
Affiliation(s)
- Marco Reinhard
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Kristjan Kunnus
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Kathryn Ledbetter
- Department of Physics, Stanford University, Stanford, California 94305, United States
| | - Elisa Biasin
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | | | - Roberto Alonso-Mori
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Tim Brandt van Driel
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Silke Nelson
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Michael Kozina
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Olaf J Borkiewicz
- X-ray Science Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Maciej Lorenc
- Univ Rennes, CNRS, IPR (Institut de Physique de Rennes)─UMR 6251, 35000 Rennes, France
| | - Marco Cammarata
- Univ Rennes, CNRS, IPR (Institut de Physique de Rennes)─UMR 6251, 35000 Rennes, France
| | - Eric Collet
- Univ Rennes, CNRS, IPR (Institut de Physique de Rennes)─UMR 6251, 35000 Rennes, France
| | - Dimosthenis Sokaras
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Amy A Cordones
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Kelly J Gaffney
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| |
Collapse
|
7
|
Antolini C, Sosa Alfaro V, Reinhard M, Chatterjee G, Ribson R, Sokaras D, Gee L, Sato T, Kramer PL, Raj SL, Hayes B, Schleissner P, Garcia-Esparza AT, Lim J, Babicz JT, Follmer AH, Nelson S, Chollet M, Alonso-Mori R, van Driel TB. The Liquid Jet Endstation for Hard X-ray Scattering and Spectroscopy at the Linac Coherent Light Source. Molecules 2024; 29:2323. [PMID: 38792184 PMCID: PMC11124266 DOI: 10.3390/molecules29102323] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Revised: 05/10/2024] [Accepted: 05/13/2024] [Indexed: 05/26/2024] Open
Abstract
The ability to study chemical dynamics on ultrafast timescales has greatly advanced with the introduction of X-ray free electron lasers (XFELs) providing short pulses of intense X-rays tailored to probe atomic structure and electronic configuration. Fully exploiting the full potential of XFELs requires specialized experimental endstations along with the development of techniques and methods to successfully carry out experiments. The liquid jet endstation (LJE) at the Linac Coherent Light Source (LCLS) has been developed to study photochemistry and biochemistry in solution systems using a combination of X-ray solution scattering (XSS), X-ray absorption spectroscopy (XAS), and X-ray emission spectroscopy (XES). The pump-probe setup utilizes an optical laser to excite the sample, which is subsequently probed by a hard X-ray pulse to resolve structural and electronic dynamics at their intrinsic femtosecond timescales. The LJE ensures reliable sample delivery to the X-ray interaction point via various liquid jets, enabling rapid replenishment of thin samples with millimolar concentrations and low sample volumes at the 120 Hz repetition rate of the LCLS beam. This paper provides a detailed description of the LJE design and of the techniques it enables, with an emphasis on the diagnostics required for real-time monitoring of the liquid jet and on the spatiotemporal overlap methods used to optimize the signal. Additionally, various scientific examples are discussed, highlighting the versatility of the LJE.
Collapse
Affiliation(s)
- Cali Antolini
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA; (C.A.); (V.S.A.); (M.R.); (G.C.); (R.R.); (D.S.); (L.G.); (T.S.); (P.L.K.); (S.L.R.); (B.H.); (P.S.); (A.T.G.-E.); (J.L.); (J.T.B.J.); (S.N.); (M.C.)
| | - Victor Sosa Alfaro
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA; (C.A.); (V.S.A.); (M.R.); (G.C.); (R.R.); (D.S.); (L.G.); (T.S.); (P.L.K.); (S.L.R.); (B.H.); (P.S.); (A.T.G.-E.); (J.L.); (J.T.B.J.); (S.N.); (M.C.)
| | - Marco Reinhard
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA; (C.A.); (V.S.A.); (M.R.); (G.C.); (R.R.); (D.S.); (L.G.); (T.S.); (P.L.K.); (S.L.R.); (B.H.); (P.S.); (A.T.G.-E.); (J.L.); (J.T.B.J.); (S.N.); (M.C.)
| | - Gourab Chatterjee
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA; (C.A.); (V.S.A.); (M.R.); (G.C.); (R.R.); (D.S.); (L.G.); (T.S.); (P.L.K.); (S.L.R.); (B.H.); (P.S.); (A.T.G.-E.); (J.L.); (J.T.B.J.); (S.N.); (M.C.)
| | - Ryan Ribson
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA; (C.A.); (V.S.A.); (M.R.); (G.C.); (R.R.); (D.S.); (L.G.); (T.S.); (P.L.K.); (S.L.R.); (B.H.); (P.S.); (A.T.G.-E.); (J.L.); (J.T.B.J.); (S.N.); (M.C.)
| | - Dimosthenis Sokaras
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA; (C.A.); (V.S.A.); (M.R.); (G.C.); (R.R.); (D.S.); (L.G.); (T.S.); (P.L.K.); (S.L.R.); (B.H.); (P.S.); (A.T.G.-E.); (J.L.); (J.T.B.J.); (S.N.); (M.C.)
| | - Leland Gee
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA; (C.A.); (V.S.A.); (M.R.); (G.C.); (R.R.); (D.S.); (L.G.); (T.S.); (P.L.K.); (S.L.R.); (B.H.); (P.S.); (A.T.G.-E.); (J.L.); (J.T.B.J.); (S.N.); (M.C.)
| | - Takahiro Sato
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA; (C.A.); (V.S.A.); (M.R.); (G.C.); (R.R.); (D.S.); (L.G.); (T.S.); (P.L.K.); (S.L.R.); (B.H.); (P.S.); (A.T.G.-E.); (J.L.); (J.T.B.J.); (S.N.); (M.C.)
| | - Patrick L. Kramer
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA; (C.A.); (V.S.A.); (M.R.); (G.C.); (R.R.); (D.S.); (L.G.); (T.S.); (P.L.K.); (S.L.R.); (B.H.); (P.S.); (A.T.G.-E.); (J.L.); (J.T.B.J.); (S.N.); (M.C.)
| | - Sumana Laxmi Raj
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA; (C.A.); (V.S.A.); (M.R.); (G.C.); (R.R.); (D.S.); (L.G.); (T.S.); (P.L.K.); (S.L.R.); (B.H.); (P.S.); (A.T.G.-E.); (J.L.); (J.T.B.J.); (S.N.); (M.C.)
| | - Brandon Hayes
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA; (C.A.); (V.S.A.); (M.R.); (G.C.); (R.R.); (D.S.); (L.G.); (T.S.); (P.L.K.); (S.L.R.); (B.H.); (P.S.); (A.T.G.-E.); (J.L.); (J.T.B.J.); (S.N.); (M.C.)
| | - Pamela Schleissner
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA; (C.A.); (V.S.A.); (M.R.); (G.C.); (R.R.); (D.S.); (L.G.); (T.S.); (P.L.K.); (S.L.R.); (B.H.); (P.S.); (A.T.G.-E.); (J.L.); (J.T.B.J.); (S.N.); (M.C.)
| | - Angel T. Garcia-Esparza
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA; (C.A.); (V.S.A.); (M.R.); (G.C.); (R.R.); (D.S.); (L.G.); (T.S.); (P.L.K.); (S.L.R.); (B.H.); (P.S.); (A.T.G.-E.); (J.L.); (J.T.B.J.); (S.N.); (M.C.)
| | - Jinkyu Lim
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA; (C.A.); (V.S.A.); (M.R.); (G.C.); (R.R.); (D.S.); (L.G.); (T.S.); (P.L.K.); (S.L.R.); (B.H.); (P.S.); (A.T.G.-E.); (J.L.); (J.T.B.J.); (S.N.); (M.C.)
- Department of Energy and Environmental Engineering, The Catholic University of Korea, Bucheon 14662, Republic of Korea
| | - Jeffrey T. Babicz
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA; (C.A.); (V.S.A.); (M.R.); (G.C.); (R.R.); (D.S.); (L.G.); (T.S.); (P.L.K.); (S.L.R.); (B.H.); (P.S.); (A.T.G.-E.); (J.L.); (J.T.B.J.); (S.N.); (M.C.)
| | - Alec H. Follmer
- Department of Chemistry, University of California-Irvine, Irvine, CA 92697, USA;
| | - Silke Nelson
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA; (C.A.); (V.S.A.); (M.R.); (G.C.); (R.R.); (D.S.); (L.G.); (T.S.); (P.L.K.); (S.L.R.); (B.H.); (P.S.); (A.T.G.-E.); (J.L.); (J.T.B.J.); (S.N.); (M.C.)
| | - Matthieu Chollet
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA; (C.A.); (V.S.A.); (M.R.); (G.C.); (R.R.); (D.S.); (L.G.); (T.S.); (P.L.K.); (S.L.R.); (B.H.); (P.S.); (A.T.G.-E.); (J.L.); (J.T.B.J.); (S.N.); (M.C.)
| | - Roberto Alonso-Mori
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA; (C.A.); (V.S.A.); (M.R.); (G.C.); (R.R.); (D.S.); (L.G.); (T.S.); (P.L.K.); (S.L.R.); (B.H.); (P.S.); (A.T.G.-E.); (J.L.); (J.T.B.J.); (S.N.); (M.C.)
| | - Tim B. van Driel
- SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94025, USA; (C.A.); (V.S.A.); (M.R.); (G.C.); (R.R.); (D.S.); (L.G.); (T.S.); (P.L.K.); (S.L.R.); (B.H.); (P.S.); (A.T.G.-E.); (J.L.); (J.T.B.J.); (S.N.); (M.C.)
| |
Collapse
|
8
|
Chen LX, Yano J. Deciphering Photoinduced Catalytic Reaction Mechanisms in Natural and Artificial Photosynthetic Systems on Multiple Temporal and Spatial Scales Using X-ray Probes. Chem Rev 2024; 124:5421-5469. [PMID: 38663009 DOI: 10.1021/acs.chemrev.3c00560] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/09/2024]
Abstract
Utilization of renewable energies for catalytically generating value-added chemicals is highly desirable in this era of rising energy demands and climate change impacts. Artificial photosynthetic systems or photocatalysts utilize light to convert abundant CO2, H2O, and O2 to fuels, such as carbohydrates and hydrogen, thus converting light energy to storable chemical resources. The emergence of intense X-ray pulses from synchrotrons, ultrafast X-ray pulses from X-ray free electron lasers, and table-top laser-driven sources over the past decades opens new frontiers in deciphering photoinduced catalytic reaction mechanisms on the multiple temporal and spatial scales. Operando X-ray spectroscopic methods offer a new set of electronic transitions in probing the oxidation states, coordinating geometry, and spin states of the metal catalytic center and photosensitizers with unprecedented energy and time resolution. Operando X-ray scattering methods enable previously elusive reaction steps to be characterized on different length scales and time scales. The methodological progress and their application examples collected in this review will offer a glimpse into the accomplishments and current state in deciphering reaction mechanisms for both natural and synthetic systems. Looking forward, there are still many challenges and opportunities at the frontier of catalytic research that will require further advancement of the characterization techniques.
Collapse
Affiliation(s)
- Lin X Chen
- Chemical Science and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Junko Yano
- Molecular Biophysics & Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| |
Collapse
|
9
|
Lee Y, Oang KY, Kim D, Ihee H. A comparative review of time-resolved x-ray and electron scattering to probe structural dynamics. STRUCTURAL DYNAMICS (MELVILLE, N.Y.) 2024; 11:031301. [PMID: 38706888 PMCID: PMC11065455 DOI: 10.1063/4.0000249] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/15/2024] [Accepted: 04/10/2024] [Indexed: 05/07/2024]
Abstract
The structure of molecules, particularly the dynamic changes in structure, plays an essential role in understanding physical and chemical phenomena. Time-resolved (TR) scattering techniques serve as crucial experimental tools for studying structural dynamics, offering direct sensitivity to molecular structures through scattering signals. Over the past decade, the advent of x-ray free-electron lasers (XFELs) and mega-electron-volt ultrafast electron diffraction (MeV-UED) facilities has ushered TR scattering experiments into a new era, garnering significant attention. In this review, we delve into the basic principles of TR scattering experiments, especially focusing on those that employ x-rays and electrons. We highlight the variations in experimental conditions when employing x-rays vs electrons and discuss their complementarity. Additionally, cutting-edge XFELs and MeV-UED facilities for TR x-ray and electron scattering experiments and the experiments performed at those facilities are reviewed. As new facilities are constructed and existing ones undergo upgrades, the landscape for TR x-ray and electron scattering experiments is poised for further expansion. Through this review, we aim to facilitate the effective utilization of these emerging opportunities, assisting researchers in delving deeper into the intricate dynamics of molecular structures.
Collapse
Affiliation(s)
| | - Key Young Oang
- Radiation Center for Ultrafast Science, Korea Atomic Energy Research Institute (KAERI), Daejeon 34057, South Korea
| | | | | |
Collapse
|
10
|
Van Stappen C, Van Kuiken BE, Mörtel M, Ruotsalainen KO, Maganas D, Khusniyarov MM, DeBeer S. Correlating Valence and 2p3d RIXS Spectroscopies: A Ligand-Field Study of Spin-Crossover Iron(II). Inorg Chem 2024; 63:7386-7400. [PMID: 38587408 DOI: 10.1021/acs.inorgchem.4c00435] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/09/2024]
Abstract
The molecular spin-crossover phenomenon between high-spin (HS) and low-spin (LS) states is a promising route to next-generation information storage, sensing applications, and molecular spintronics. Spin-crossover complexes also provide a unique opportunity to study the ligand field (LF) properties of a system in both HS and LS states while maintaining the same ligand environment. Presently, we employ complementing valence and core-level spectroscopic methods to probe the electronic excited-state manifolds of the spin-crossover complex [FeII(H2B(pz)2)2phen]0. Light-induced excited spin-state trapping (LIESST) at liquid He temperatures is exploited to characterize magnetic and spectroscopic properties of the photoinduced HS state using SQUID magnetometry and magnetic circular dichroism spectroscopy. In parallel, Fe 2p3d RIXS spectroscopy is employed to examine the ΔS = 0, 1 excited LF states. These experimental studies are combined with state-of-the-art CASSCF/NEVPT2 and CASCI/NEVPT2 calculations characterizing the ground and LF excited states. Analysis of the acquired LF information further supports the notion that the spin-crossover of [FeII(H2B(pz)2)2phen]0 is asymmetric, evidenced by a decrease in eπ in the LS state. The results demonstrate the power of cross-correlating spectroscopic techniques with high and low LF information content to make accurate excited-state assignments, as well as the current capabilities of ab initio theory in interpreting these electronic properties.
Collapse
Affiliation(s)
- Casey Van Stappen
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Benjamin E Van Kuiken
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr, Germany
- European XFEL, Holzkoppel 4, 22869 Schenefeld, Germany
| | - Max Mörtel
- Department of Chemistry and Pharmacy, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Egerlandstrasse 1, 91058 Erlangen, Germany
| | - Kari O Ruotsalainen
- Synchrotron SOLEIL, L'Orme des Merisiers, Départementale 128, 91190 Saint-Aubin, France
| | - Dimitrios Maganas
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany
| | - Marat M Khusniyarov
- Department of Chemistry and Pharmacy, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), Egerlandstrasse 1, 91058 Erlangen, Germany
| | - Serena DeBeer
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr, Germany
| |
Collapse
|
11
|
Wegeberg C, Häussinger D, Kupfer S, Wenger OS. Controlling the Photophysical Properties of a Series of Isostructural d 6 Complexes Based on Cr 0, Mn I, and Fe II. J Am Chem Soc 2024; 146:4605-4619. [PMID: 38334415 PMCID: PMC10885143 DOI: 10.1021/jacs.3c11580] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/10/2024]
Abstract
Development of first-row transition metal complexes with similar luminescence and photoredox properties as widely used RuII polypyridines is attractive because metals from the first transition series are comparatively abundant and inexpensive. The weaker ligand field experienced by the valence d-electrons of first-row transition metals challenges the installation of the same types of metal-to-ligand charge transfer (MLCT) excited states as in precious metal complexes, due to rapid population of energetically lower-lying metal-centered (MC) states. In a family of isostructural tris(diisocyanide) complexes of the 3d6 metals Cr0, MnI, and FeII, the increasing effective nuclear charge and ligand field strength allow us to control the energetic order between the 3MLCT and 3MC states, whereas pyrene decoration of the isocyanide ligand framework provides control over intraligand (ILPyr) states. The chromium(0) complex shows red 3MLCT phosphorescence because all other excited states are higher in energy. In the manganese(I) complex, a microsecond-lived dark 3ILPyr state, reminiscent of the types of electronic states encountered in many polyaromatic hydrocarbon compounds, is the lowest and becomes photoactive. In the iron(II) complex, the lowest MLCT state has shifted to so much higher energy that 1ILPyr fluorescence occurs, in parallel to other excited-state deactivation pathways. Our combined synthetic-spectroscopic-theoretical study provides unprecedented insights into how effective nuclear charge, ligand field strength, and ligand π-conjugation affect the energetic order between MLCT and ligand-based excited states, and under what circumstances these individual states become luminescent and exploitable in photochemistry. Such insights are the key to further developments of luminescent and photoredox-active first-row transition metal complexes.
Collapse
Affiliation(s)
- Christina Wegeberg
- Department of Chemistry, University of Basel, St. Johanns-Ring 19, 4056 Basel, Switzerland
| | - Daniel Häussinger
- Department of Chemistry, University of Basel, St. Johanns-Ring 19, 4056 Basel, Switzerland
| | - Stephan Kupfer
- Institute of Physical Chemistry, Friedrich Schiller University Jena, Helmholtzweg 4, 07743 Jena, Germany
| | - Oliver S Wenger
- Department of Chemistry, University of Basel, St. Johanns-Ring 19, 4056 Basel, Switzerland
| |
Collapse
|
12
|
Biró L, Csehi A. Attosecond Probing of Nuclear Vibrations in the D 2+ and HeH + Molecular Ions. J Phys Chem A 2024; 128:858-867. [PMID: 38277484 DOI: 10.1021/acs.jpca.3c07031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2024]
Abstract
We study the ultrafast photodissociation of small diatomic molecules using attosecond laser pulses of moderate intensity in the (extreme) ultraviolet regime. The simultaneous application of subfemtosecond laser pulses with different photon energies─resonant in the region of the molecular motion─allows one to monitor the vibrational dynamics of simple diatomics, like the D2+ and HeH+ molecular ions. In our real-time wave packet simulations, the nuclear dynamics is initiated either by sudden ionization (D2+) or by explicit pump pulses (HeH+) via distortion of the potential energy of the molecule. The application of time-delayed attosecond pulses leads to the breakup of the molecules, and the information on the underlying bound-state dynamics is imprinted in the kinetic energy release (KER) spectra of the outgoing fragments. We show that the KER-delay spectrograms generated in our ultrafast pump-probe schemes are able to reconstruct the most important features of the molecular motion within a given electronic state, such as the time period or amplitude of oscillations, interference patterns, or the revival and splitting of the nuclear wave packet. The impact of probe pulse duration, which is key to the applicability of the presented mapping scheme, is investigated in detail.
Collapse
Affiliation(s)
- László Biró
- Department of Theoretical Physics, Faculty of Science and Technology, University of Debrecen, H-4002 Debrecen, P.O. Box 400, Hungary
| | - András Csehi
- Department of Theoretical Physics, Faculty of Science and Technology, University of Debrecen, H-4002 Debrecen, P.O. Box 400, Hungary
| |
Collapse
|
13
|
Lindh L, Pascher T, Persson S, Goriya Y, Wärnmark K, Uhlig J, Chábera P, Persson P, Yartsev A. Multifaceted Deactivation Dynamics of Fe(II) N-Heterocyclic Carbene Photosensitizers. J Phys Chem A 2023; 127:10210-10222. [PMID: 38000043 DOI: 10.1021/acs.jpca.3c06983] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2023]
Abstract
Excited state dynamics of three iron(II) carbene complexes that serve as prototype Earth-abundant photosensitizers were investigated by ultrafast optical spectroscopy. Significant differences in the dynamics between the investigated complexes down to femtosecond time scales are used to characterize fundamental differences in the depopulation of triplet metal-to-ligand charge-transfer (3MLCT) excited states in the presence of energetically accessible triplet metal-centered (3MC) states. Novel insights into the full deactivation cascades of the investigated complexes include evidence of the need to revise the deactivation model for a prominent iron carbene prototype complex, a refined understanding of complex 3MC dynamics, and a quantitative discrimination between activated and barrierless deactivation steps along the 3MLCT → 3MC → 1GS path. Overall, the study provides an improved understanding of photophysical limitations and opportunities for the use of iron(II)-based photosensitizers in photochemical applications.
Collapse
Affiliation(s)
- Linnea Lindh
- Division of Chemical Physics, Department of Chemistry, Lund University, Box 124, SE-22100 Lund, Sweden
- Division of Computational Chemistry, Department of Chemistry, Lund University, Box 124, SE-22100 Lund, Sweden
| | - Torbjörn Pascher
- Division of Chemical Physics, Department of Chemistry, Lund University, Box 124, SE-22100 Lund, Sweden
| | - Samuel Persson
- Center for Analysis and Synthesis (CAS), Department of Chemistry, Lund University, Box 124, SE-22100 Lund, Sweden
| | - Yogesh Goriya
- Center for Analysis and Synthesis (CAS), Department of Chemistry, Lund University, Box 124, SE-22100 Lund, Sweden
| | - Kenneth Wärnmark
- Center for Analysis and Synthesis (CAS), Department of Chemistry, Lund University, Box 124, SE-22100 Lund, Sweden
| | - Jens Uhlig
- Division of Chemical Physics, Department of Chemistry, Lund University, Box 124, SE-22100 Lund, Sweden
| | - Pavel Chábera
- Division of Chemical Physics, Department of Chemistry, Lund University, Box 124, SE-22100 Lund, Sweden
| | - Petter Persson
- Division of Computational Chemistry, Department of Chemistry, Lund University, Box 124, SE-22100 Lund, Sweden
| | - Arkady Yartsev
- Division of Chemical Physics, Department of Chemistry, Lund University, Box 124, SE-22100 Lund, Sweden
| |
Collapse
|
14
|
Talbot JJ, Arias-Martinez JE, Cotton SJ, Head-Gordon M. Fantastical excited state optimized structures and where to find them. J Chem Phys 2023; 159:171102. [PMID: 37916588 DOI: 10.1063/5.0172015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2023] [Accepted: 10/16/2023] [Indexed: 11/03/2023] Open
Abstract
The quantum chemistry community has developed analytic forces for approximate electronic excited states to enable walking on excited state potential energy surfaces (PES). One can thereby computationally characterize excited state minima and saddle points. Always implicit in using this machinery is the fact that an excited state PES only exists within the realm of the Born-Oppenheimer approximation, where the nuclear and electronic degrees of freedom separate. This work demonstrates through ab initio calculations and simple nonadiabatic dynamics that some excited state minimum structures are fantastical: they appear to exist as stable configurations only as a consequence of the PES construct, rather than being physically observable. Each fantastical structure exhibits an unphysically high predicted harmonic frequency and associated force constant. This fact can serve as a valuable diagnostic of when an optimized excited state structure is non-observable. The origin of this phenomenon can be attributed to the coupling between different electronic states. As PESs approach one another, the upper surface can form a minimum that is very close to a near-touching point. The force constant, evaluated at this minimum, relates to the strength of the electronic coupling rather than to any characteristic excited state vibration. Nonadiabatic dynamics results using a Landau-Zener model illustrate that fantastical excited state structures have extremely short lifetimes on the order of a few femtoseconds. Their appearance in a calculation signals the presence of a nearby conical intersection through which the system will rapidly cross to a lower surface.
Collapse
Affiliation(s)
- Justin J Talbot
- Department of Chemistry, University of California Berkeley, Berkeley, California 94720, USA
| | - Juan E Arias-Martinez
- Department of Chemistry, University of California Berkeley, Berkeley, California 94720, USA
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Stephen J Cotton
- Department of Chemistry, University of California Berkeley, Berkeley, California 94720, USA
| | - Martin Head-Gordon
- Department of Chemistry, University of California Berkeley, Berkeley, California 94720, USA
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| |
Collapse
|
15
|
Lee Y, Ki H, Im D, Eom S, Gu J, Lee S, Kim J, Cha Y, Lee KW, Zerdane S, Levantino M, Ihee H. Cerium Photocatalyst in Action: Structural Dynamics in the Presence of Substrate Visualized via Time-Resolved X-ray Liquidography. J Am Chem Soc 2023; 145:23715-23726. [PMID: 37856865 PMCID: PMC10623567 DOI: 10.1021/jacs.3c08166] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2023] [Indexed: 10/21/2023]
Abstract
[Ce(III)Cl6]3-, with its earth-abundant metal element, is a promising photocatalyst facilitating carbon-halogen bond activation. Still, the structure of the reaction intermediate has yet to be explored. Here, we applied time-resolved X-ray liquidography (TRXL), which allows for direct observation of the structural details of reaction intermediates, to investigate the photocatalytic reaction of [Ce(III)Cl6]3-. Structural analysis of the TRXL data revealed that the excited state of [Ce(III)Cl6]3- has Ce-Cl bonds that are shorter than those of the ground state and that the Ce-Cl bond further contracts upon oxidation. In addition, this study represents the first application of TRXL to both photocatalyst-only and photocatalyst-and-substrate samples, providing insights into the substrate's influence on the photocatalyst's reaction dynamics. This study demonstrates the capability of TRXL in elucidating the reaction dynamics of photocatalysts under various conditions and highlights the importance of experimental determination of the structures of reaction intermediates to advance our understanding of photocatalytic mechanisms.
Collapse
Affiliation(s)
- Yunbeom Lee
- Center
for Advanced Reaction Dynamics, Institute
for Basic Science (IBS), Daejeon, 34141, Republic
of Korea
- Department
of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea
| | - Hosung Ki
- Center
for Advanced Reaction Dynamics, Institute
for Basic Science (IBS), Daejeon, 34141, Republic
of Korea
- Department
of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea
| | - Donghwan Im
- Center
for Advanced Reaction Dynamics, Institute
for Basic Science (IBS), Daejeon, 34141, Republic
of Korea
- Department
of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea
| | - Seunghwan Eom
- Center
for Advanced Reaction Dynamics, Institute
for Basic Science (IBS), Daejeon, 34141, Republic
of Korea
- Department
of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea
| | - Jain Gu
- Center
for Advanced Reaction Dynamics, Institute
for Basic Science (IBS), Daejeon, 34141, Republic
of Korea
- Department
of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea
| | - Seonggon Lee
- Center
for Advanced Reaction Dynamics, Institute
for Basic Science (IBS), Daejeon, 34141, Republic
of Korea
- Department
of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea
| | - Jungmin Kim
- Center
for Advanced Reaction Dynamics, Institute
for Basic Science (IBS), Daejeon, 34141, Republic
of Korea
- Department
of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea
| | - Yongjun Cha
- Center
for Advanced Reaction Dynamics, Institute
for Basic Science (IBS), Daejeon, 34141, Republic
of Korea
- Department
of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea
| | - Kyung Won Lee
- Center
for Advanced Reaction Dynamics, Institute
for Basic Science (IBS), Daejeon, 34141, Republic
of Korea
- Department
of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea
| | - Serhane Zerdane
- European
Synchrotron Radiation Facility (ESRF), 71 Avenue des Martyrs, 38000 Grenoble, France
| | - Matteo Levantino
- European
Synchrotron Radiation Facility (ESRF), 71 Avenue des Martyrs, 38000 Grenoble, France
| | - Hyotcherl Ihee
- Center
for Advanced Reaction Dynamics, Institute
for Basic Science (IBS), Daejeon, 34141, Republic
of Korea
- Department
of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea
| |
Collapse
|
16
|
Alías-Rodríguez M, Bhattacharyya S, Huix-Rotllant M. Ultrafast Spin Crossover Photochemical Mechanism in [Fe II(2,2'-bipyridine) 3] 2+] Revealed by Quantum Dynamics. J Phys Chem Lett 2023; 14:8571-8576. [PMID: 37725036 DOI: 10.1021/acs.jpclett.3c02201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/21/2023]
Abstract
Photoexcitation of [FeII(2,2'-bipyridine)3]2+ induces a subpicosecond spin crossover transformation from a low-spin singlet to a high-spin quintet state. The mechanism involves metal-centered (MC) and metal-ligand charge transfer (MLCT) triplet intermediates, but their individual contributions to this efficient intersystem crossing have been object of debate. Employing quantum wavepacket dynamics, we show that MC triplets are catalyzing the transfer to the high-spin state. This photochemical pathway is made possible thanks to bipyridine stretching vibrations, facilitating the conversion between the MLCT bands to such MC triplets. We show that the lifetime of the MLCT states can be increased to tens of picoseconds by breaking the conjugation between pyridine units, which increases the energetic gap between MLCT and MC states. This opens the route for the design of new chelating ligands inducing long-lived MLCT states in iron complexes.
Collapse
|
17
|
Dohn AO, Markmann V, Nimmrich A, Haldrup K, Møller KB, Nielsen MM. Eliminating finite-size effects on the calculation of x-ray scattering from molecular dynamics simulations. J Chem Phys 2023; 159:124115. [PMID: 38127395 DOI: 10.1063/5.0164365] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Accepted: 09/01/2023] [Indexed: 12/23/2023] Open
Abstract
Structural studies using x-ray scattering methods for investigating molecules in solution are shifting focus toward describing the role and effects of the surrounding solvent. However, forward models based on molecular dynamics (MD) simulations to simulate structure factors and x-ray scattering from interatomic distributions such as radial distribution functions (RDFs) face limitations imposed by simulations, particularly at low values of the scattering vector q. In this work, we show how the value of the structure factor at q = 0 calculated from RDFs sampled from finite MD simulations is effectively dependent on the size of the simulation cell. To eliminate this error, we derive a new scheme to renormalize the sampled RDFs based on a model of the excluded volume of the particle-pairs they were sampled from, to emulate sampling from an infinite system. We compare this new correction method to two previous RDF-correction methods, developed for Kirkwood-Buff theory applications. We present a quantitative test to assess the reliability of the simulated low-q scattering signal and show that our RDF-correction successfully recovers the correct q = 0 limit for neat water. We investigate the effect of MD-sampling time on the RDF-corrections, before advancing to a molecular example system, comprised of a transition metal complex solvated in a series of water cells with varying densities. We show that our correction recovers the correct q = 0 behavior for all densities. Furthermore, we employ a simple continuum scattering model to dissect the total scattering signal from the solvent-solvent structural correlations in a solute-solvent model system to find two distinct contributions: a non-local density-contribution from the finite, fixed cell size in NVT simulations, and a local contribution from the solvent shell. We show how the second contribution can be approximated without also including the finite-size contribution. Finally, we provide a "best-practices"-checklist for experimentalists planning to incorporate explicit solvation MD simulations in future work, offering guidance for improving the accuracy and reliability of structural studies using x-ray scattering methods in solution.
Collapse
Affiliation(s)
- A O Dohn
- Department of Physics, Technical University of Denmark, 2800 Lyngby, Denmark
- Science Institute and Faculty of Physical Sciences, VR-III, University of Iceland, Reykjavík 107, Iceland
| | - V Markmann
- Department of Physics, Technical University of Denmark, 2800 Lyngby, Denmark
| | - A Nimmrich
- Department of Physics, Technical University of Denmark, 2800 Lyngby, Denmark
| | - K Haldrup
- Department of Physics, Technical University of Denmark, 2800 Lyngby, Denmark
| | - K B Møller
- Department of Chemistry, Technical University of Denmark, 2800 Lyngby, Denmark
| | - M M Nielsen
- Department of Physics, Technical University of Denmark, 2800 Lyngby, Denmark
| |
Collapse
|
18
|
Reinhard M, Skoien D, Spies JA, Garcia-Esparza AT, Matson BD, Corbett J, Tian K, Safranek J, Granados E, Strader M, Gaffney KJ, Alonso-Mori R, Kroll T, Sokaras D. Solution phase high repetition rate laser pump x-ray probe picosecond hard x-ray spectroscopy at the Stanford Synchrotron Radiation Lightsource. STRUCTURAL DYNAMICS (MELVILLE, N.Y.) 2023; 10:054304. [PMID: 37901682 PMCID: PMC10613086 DOI: 10.1063/4.0000207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Accepted: 10/11/2023] [Indexed: 10/31/2023]
Abstract
We present a dedicated end-station for solution phase high repetition rate (MHz) picosecond hard x-ray spectroscopy at beamline 15-2 of the Stanford Synchrotron Radiation Lightsource. A high-power ultrafast ytterbium-doped fiber laser is used to photoexcite the samples at a repetition rate of 640 kHz, while the data acquisition operates at the 1.28 MHz repetition rate of the storage ring recording data in an alternating on-off mode. The time-resolved x-ray measurements are enabled via gating the x-ray detectors with the 20 mA/70 ps camshaft bunch of SPEAR3, a mode available during the routine operations of the Stanford Synchrotron Radiation Lightsource. As a benchmark study, aiming to demonstrate the advantageous capabilities of this end-station, we have conducted picosecond Fe K-edge x-ray absorption spectroscopy on aqueous [FeII(phen)3]2+, a prototypical spin crossover complex that undergoes light-induced excited spin state trapping forming an electronic excited state with a 0.6-0.7 ns lifetime. In addition, we report transient Fe Kβ main line and valence-to-core x-ray emission spectra, showing a unique detection sensitivity and an excellent agreement with model spectra and density functional theory calculations, respectively. Notably, the achieved signal-to-noise ratio, the overall performance, and the routine availability of the developed end-station have enabled a systematic time-resolved science program using the monochromatic beam at the Stanford Synchrotron Radiation Lightsource.
Collapse
Affiliation(s)
- Marco Reinhard
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - Dean Skoien
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | | | | | | | - Jeff Corbett
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - Kai Tian
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - James Safranek
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - Eduardo Granados
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - Matthew Strader
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - Kelly J. Gaffney
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | | | - Thomas Kroll
- SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | | |
Collapse
|
19
|
Ash R, Abhari Z, Candela R, Welke N, Murawski J, Gardezi SM, Venkatasubramanian N, Munawar M, Siewert F, Sokolov A, LaDuca Z, Kawasaki J, Bergmann U. X-FAST: A versatile, high-throughput, and user-friendly XUV femtosecond absorption spectroscopy tabletop instrument. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2023; 94:073004. [PMID: 37462459 DOI: 10.1063/5.0146137] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2023] [Accepted: 06/25/2023] [Indexed: 07/21/2023]
Abstract
We present the X-FAST (XUV Femtosecond Absorption Spectroscopy Tabletop) instrument at the University of Wisconsin-Madison. The instrument produces femtosecond extreme ultraviolet photon pulses via high-harmonic generation in the range of 40-72 eV, as well as optical pump pulses for transient-absorption experiments. The system implements a gas-cooled sample cell that enables studying the dynamics of thermally sensitive thin-film samples. This paper provides potential users with specifications of the optical, vacuum, data acquisition, and sample cooling systems of the X-FAST instrument, along with performance metrics and data of an ultrafast laser-induced phase transition in a Ni2MnGa Heusler thin film.
Collapse
Affiliation(s)
- Ryan Ash
- Department of Physics, University of Wisconsin Madison, 1150 University Ave., Madison, Wisconsin 53706, USA
| | - Zain Abhari
- Department of Physics, University of Wisconsin Madison, 1150 University Ave., Madison, Wisconsin 53706, USA
| | - Roberta Candela
- Department of Physics, University of Wisconsin Madison, 1150 University Ave., Madison, Wisconsin 53706, USA
| | - Noah Welke
- Department of Physics, University of Wisconsin Madison, 1150 University Ave., Madison, Wisconsin 53706, USA
| | - Jake Murawski
- Department of Physics, University of Wisconsin Madison, 1150 University Ave., Madison, Wisconsin 53706, USA
| | - S Minhal Gardezi
- Department of Physics, University of Wisconsin Madison, 1150 University Ave., Madison, Wisconsin 53706, USA
| | | | - Muneeza Munawar
- Department of Physics, University of Wisconsin Madison, 1150 University Ave., Madison, Wisconsin 53706, USA
| | - Frank Siewert
- Helmholtz Zentrum Berlin für Materialien und Energie, Department of Optics and Beamlines, Albert-Einstein-Str. 15, 12489 Berlin, Germany
| | - Andrey Sokolov
- Helmholtz Zentrum Berlin für Materialien und Energie, Department of Optics and Beamlines, Albert-Einstein-Str. 15, 12489 Berlin, Germany
| | - Zachary LaDuca
- Department of Materials Science and Engineering, University of Wisconsin Madison, 1509 University Ave., Madison, Wisconsin 53706, USA
| | - Jason Kawasaki
- Department of Materials Science and Engineering, University of Wisconsin Madison, 1509 University Ave., Madison, Wisconsin 53706, USA
| | - Uwe Bergmann
- Department of Physics, University of Wisconsin Madison, 1150 University Ave., Madison, Wisconsin 53706, USA
| |
Collapse
|
20
|
Iuchi S, Koga N. Ultrafast Electronic Relaxation in Aqueous [Fe(bpy) 3] 2+: A Surface Hopping Study. J Phys Chem Lett 2023; 14:4225-4232. [PMID: 37126354 DOI: 10.1021/acs.jpclett.3c00686] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Trajectory surface hopping simulations are performed to better understand the electronic relaxation dynamics of [Fe(bpy)3]2+ in aqueous solution. Specifically, the ultrafast relaxation from the photoexcited singlet metal-to-ligand charge-transfer (MLCT) to the metastable quintet metal-centered (MC) states is simulated through the surface hopping method, where the MLCT and MC states of [Fe(bpy)3]2+ in aqueous solution are computed by using a model electronic Hamiltonian developed previously. As a result, most of the trajectories are interpreted to show the sequential relaxation pathways via the triplet MC states, though some are the direct pathway from MLCT to the quintet MC states. Even though the triplet MC states are involved in the relaxation, the population transfer to the singlet MC ground state is very small, and the population of the quintet MC states reaches more than ∼96%, reasonably consistent with the unity quantum efficiency discussed experimentally.
Collapse
Affiliation(s)
- Satoru Iuchi
- Graduate School of Informatics, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan
| | - Nobuaki Koga
- Graduate School of Informatics, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601, Japan
| |
Collapse
|
21
|
Nimmrich A, Panman MR, Berntsson O, Biasin E, Niebling S, Petersson J, Hoernke M, Björling A, Gustavsson E, van Driel TB, Dohn AO, Laursen M, Zederkof DB, Tono K, Katayama T, Owada S, Nielsen MM, Davidsson J, Uhlig J, Hub JS, Haldrup K, Westenhoff S. Solvent-Dependent Structural Dynamics in the Ultrafast Photodissociation Reaction of Triiodide Observed with Time-Resolved X-ray Solution Scattering. J Am Chem Soc 2023. [PMID: 37163700 PMCID: PMC10375522 DOI: 10.1021/jacs.3c00484] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Resolving the structural dynamics of bond breaking, bond formation, and solvation is required for a deeper understanding of solution-phase chemical reactions. In this work, we investigate the photodissociation of triiodide in four solvents using femtosecond time-resolved X-ray solution scattering following 400 nm photoexcitation. Structural analysis of the scattering data resolves the solvent-dependent structural evolution during the bond cleavage, internal rearrangements, solvent-cage escape, and bond reformation in real time. The nature and structure of the reaction intermediates during the recombination are determined, elucidating the full mechanism of photodissociation and recombination on ultrafast time scales. We resolve the structure of the precursor state for recombination as a geminate pair. Further, we determine the size of the solvent cages from the refined structures of the radical pair. The observed structural dynamics present a comprehensive picture of the solvent influence on structure and dynamics of dissociation reactions.
Collapse
Affiliation(s)
- Amke Nimmrich
- Department of Chemistry and Molecular Biology, University of Gothenburg, Box 462, 40530 Gothenburg, Sweden
| | - Matthijs R Panman
- Department of Chemistry and Molecular Biology, University of Gothenburg, Box 462, 40530 Gothenburg, Sweden
| | - Oskar Berntsson
- Department of Chemistry and Molecular Biology, University of Gothenburg, Box 462, 40530 Gothenburg, Sweden
| | - Elisa Biasin
- Department of Physics, Technical University of Denmark, 2800 Lyngby, Denmark
| | - Stephan Niebling
- Department of Chemistry and Molecular Biology, University of Gothenburg, Box 462, 40530 Gothenburg, Sweden
| | - Jonas Petersson
- Department of Chemistry, Ångström Laboratory, Uppsala University, Box 523, 75120 Uppsala, Sweden
| | - Maria Hoernke
- Department of Chemistry and Molecular Biology, University of Gothenburg, Box 462, 40530 Gothenburg, Sweden
| | - Alexander Björling
- Department of Chemistry and Molecular Biology, University of Gothenburg, Box 462, 40530 Gothenburg, Sweden
| | - Emil Gustavsson
- Department of Chemistry and Molecular Biology, University of Gothenburg, Box 462, 40530 Gothenburg, Sweden
| | - Tim B van Driel
- Department of Physics, Technical University of Denmark, 2800 Lyngby, Denmark
| | - Asmus O Dohn
- Department of Physics, Technical University of Denmark, 2800 Lyngby, Denmark
- Faculty of Physical Sciences, University of Iceland, VR-III, 107 Reykjavík, Iceland
| | - Mads Laursen
- Department of Physics, Technical University of Denmark, 2800 Lyngby, Denmark
| | - Diana B Zederkof
- Department of Physics, Technical University of Denmark, 2800 Lyngby, Denmark
| | - Kensuke Tono
- Japan Synchrotron Radiation Research Institute, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5198, Japan
| | - Tetsuo Katayama
- Japan Synchrotron Radiation Research Institute, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5198, Japan
| | - Shigeki Owada
- RIKEN SPring-8 Center, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan
| | - Martin M Nielsen
- Department of Physics, Technical University of Denmark, 2800 Lyngby, Denmark
| | - Jan Davidsson
- Department of Chemistry, Ångström Laboratory, Uppsala University, Box 523, 75120 Uppsala, Sweden
| | - Jens Uhlig
- Department of Chemical Physics, Lund University, Box 124, 22100 Lund, Sweden
| | - Jochen S Hub
- Georg-August-Universität Göttingen, Institute for Microbiology and Genetics, Justus-von-Liebig-Weg 11, 37077 Göttingen, Germany
| | - Kristoffer Haldrup
- Department of Physics, Technical University of Denmark, 2800 Lyngby, Denmark
| | - Sebastian Westenhoff
- Department of Chemistry and Molecular Biology, University of Gothenburg, Box 462, 40530 Gothenburg, Sweden
- Department of Chemical Physics, Lund University, Box 124, 22100 Lund, Sweden
| |
Collapse
|
22
|
Reinhard M, Gallo A, Guo M, Garcia-Esparza AT, Biasin E, Qureshi M, Britz A, Ledbetter K, Kunnus K, Weninger C, van Driel T, Robinson J, Glownia JM, Gaffney KJ, Kroll T, Weng TC, Alonso-Mori R, Sokaras D. Ferricyanide photo-aquation pathway revealed by combined femtosecond Kβ main line and valence-to-core x-ray emission spectroscopy. Nat Commun 2023; 14:2443. [PMID: 37147295 PMCID: PMC10163258 DOI: 10.1038/s41467-023-37922-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2022] [Accepted: 03/30/2023] [Indexed: 05/07/2023] Open
Abstract
Reliably identifying short-lived chemical reaction intermediates is crucial to elucidate reaction mechanisms but becomes particularly challenging when multiple transient species occur simultaneously. Here, we report a femtosecond x-ray emission spectroscopy and scattering study of the aqueous ferricyanide photochemistry, utilizing the combined Fe Kβ main and valence-to-core emission lines. Following UV-excitation, we observe a ligand-to-metal charge transfer excited state that decays within 0.5 ps. On this timescale, we also detect a hitherto unobserved short-lived species that we assign to a ferric penta-coordinate intermediate of the photo-aquation reaction. We provide evidence that bond photolysis occurs from reactive metal-centered excited states that are populated through relaxation of the charge transfer excited state. Beyond illuminating the elusive ferricyanide photochemistry, these results show how current limitations of Kβ main line analysis in assigning ultrafast reaction intermediates can be circumvented by simultaneously using the valence-to-core spectral range.
Collapse
Affiliation(s)
- Marco Reinhard
- SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
| | | | - Meiyuan Guo
- SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | | | - Elisa Biasin
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA
| | | | | | - Kathryn Ledbetter
- Department of Physics, Stanford University, Stanford, CA, USA
- Department of Physics, Harvard University, Cambridge, MA, USA
| | | | - Clemens Weninger
- SLAC National Accelerator Laboratory, Menlo Park, CA, USA
- MAX IV Laboratory, Lund University, Lund, Sweden
| | - Tim van Driel
- SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | | | | | | | - Thomas Kroll
- SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - Tsu-Chien Weng
- School of Physical Science and Technology, ShanghaiTech University, Shanghai, China
| | | | | |
Collapse
|
23
|
Malme JT, Clendening RA, Ash R, Curry T, Ren T, Vura-Weis J. Nanosecond Metal-to-Ligand Charge-Transfer State in an Fe(II) Chromophore: Lifetime Enhancement via Nested Potentials. J Am Chem Soc 2023; 145:6029-6034. [PMID: 36913625 DOI: 10.1021/jacs.2c13532] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/14/2023]
Abstract
Examples of Fe complexes with long-lived (≥1 ns) charge-transfer states are limited to pseudo-octahedral geometries with strong σ-donor chelates. Alternative strategies based on varying both coordination motifs and ligand donicity are highly desirable. Reported herein is an air-stable, tetragonal FeII complex, Fe(HMTI)(CN)2 (HMTI = 5,5,7,12,12,14-hexamethyl-1,4,8,11-tetraazacyclotetradeca-1,3,8,10-tetraene), with a 1.25 ns metal-to-ligand charge-transfer (MLCT) lifetime. The structure has been determined, and the photophysical properties have been examined in a variety of solvents. The HMTI ligand is highly π-acidic due to low-lying π*(C═N), which enhances ΔFe via stabilizing t2g orbitals. The inflexible geometry of the macrocycle results in short Fe-N bonds, and density functional theory calculations show that this rigidity results in an unusual set of nested potential energy surfaces. Moreover, the lifetime and energy of the MLCT state depends strongly on the solvent environment. This dependence is caused by modulation of the axial ligand-field strength by Lewis acid-base interactions between the solvent and the cyano ligands. This work represents the first example of a long-lived charge transfer state in an FeII macrocyclic species.
Collapse
Affiliation(s)
- Justin T Malme
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Reese A Clendening
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | - Ryan Ash
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Taylor Curry
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| | - Tong Ren
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
| | - Josh Vura-Weis
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
- Materials Research Laboratory, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, United States
| |
Collapse
|
24
|
Katayama T, Choi TK, Khakhulin D, Dohn AO, Milne CJ, Vankó G, Németh Z, Lima FA, Szlachetko J, Sato T, Nozawa S, Adachi SI, Yabashi M, Penfold TJ, Gawelda W, Levi G. Atomic-scale observation of solvent reorganization influencing photoinduced structural dynamics in a copper complex photosensitizer. Chem Sci 2023; 14:2572-2584. [PMID: 36908966 PMCID: PMC9993854 DOI: 10.1039/d2sc06600a] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Accepted: 01/30/2023] [Indexed: 02/04/2023] Open
Abstract
Photochemical reactions in solution are governed by a complex interplay between transient intramolecular electronic and nuclear structural changes and accompanying solvent rearrangements. State-of-the-art time-resolved X-ray solution scattering has emerged in the last decade as a powerful technique to observe solute and solvent motions in real time. However, disentangling solute and solvent dynamics and how they mutually influence each other remains challenging. Here, we simultaneously measure femtosecond X-ray emission and scattering to track both the intramolecular and solvation structural dynamics following photoexcitation of a solvated copper photosensitizer. Quantitative analysis assisted by molecular dynamics simulations reveals a two-step ligand flattening strongly coupled to the solvent reorganization, which conventional optical methods could not discern. First, a ballistic flattening triggers coherent motions of surrounding acetonitrile molecules. In turn, the approach of acetonitrile molecules to the copper atom mediates the decay of intramolecular coherent vibrations and induces a further ligand flattening. These direct structural insights reveal that photoinduced solute and solvent motions can be intimately intertwined, explaining how the key initial steps of light harvesting are affected by the solvent on the atomic time and length scale. Ultimately, this work takes a step forward in understanding the microscopic mechanisms of the bidirectional influence between transient solvent reorganization and photoinduced solute structural dynamics.
Collapse
Affiliation(s)
- Tetsuo Katayama
- Japan Synchrotron Radiation Research Institute Kouto 1-1-1, Sayo Hyogo 679-5198 Japan.,RIKEN SPring-8 Center 1-1-1 Kouto, Sayo Hyogo 679-5148 Japan
| | - Tae-Kyu Choi
- XFEL Division, Pohang Accelerator Laboratory Jigok-ro 127-80 Pohang 37673 Republic of Korea
| | | | - Asmus O Dohn
- Science Institute, University of Iceland 107 Reykjavík Iceland .,DTU Physics, Technical University of Denmark Kongens Lyngby Denmark
| | | | - György Vankó
- Wigner Research Centre for Physics, Hungarian Academy of Sciences H-1525 Budapest Hungary
| | - Zoltán Németh
- Wigner Research Centre for Physics, Hungarian Academy of Sciences H-1525 Budapest Hungary
| | | | - Jakub Szlachetko
- SOLARIS National Synchrotron Radiation Centre, Jagiellonian University PL-30392 Kraków Poland
| | - Tokushi Sato
- European XFEL Holzkoppel 4, Schenefeld 22869 Germany
| | - Shunsuke Nozawa
- Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK) 1-1 Oho Tsukuba Ibaraki 305-0801 Japan.,Department of Materials Structure Science, School of High Energy Accelerator Science, The Graduate University for Advanced Studies 1-1 Oho Tsukuba Ibaraki 305-0801 Japan
| | - Shin-Ichi Adachi
- Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK) 1-1 Oho Tsukuba Ibaraki 305-0801 Japan.,Department of Materials Structure Science, School of High Energy Accelerator Science, The Graduate University for Advanced Studies 1-1 Oho Tsukuba Ibaraki 305-0801 Japan
| | - Makina Yabashi
- RIKEN SPring-8 Center 1-1-1 Kouto, Sayo Hyogo 679-5148 Japan
| | - Thomas J Penfold
- Chemistry-School of Natural and Environmental Sciences, Newcastle University Newcastle Upon-Tyne NE1 7RU UK
| | - Wojciech Gawelda
- Departamento de Química, Universidad Autónoma de Madrid, Campus Cantoblanco 28047 Madrid Spain.,IMDEA-Nanociencia, Campus Cantoblanco C/Faraday 9 28049 Madrid Spain.,Faculty of Physics, Adam Mickiewicz University 61-614 Poznań Poland
| | - Gianluca Levi
- Science Institute, University of Iceland 107 Reykjavík Iceland
| |
Collapse
|
25
|
Branching mechanism of photoswitching in an Fe(II) polypyridyl complex explained by full singlet-triplet-quintet dynamics. Commun Chem 2023; 6:7. [PMID: 36697805 PMCID: PMC9829715 DOI: 10.1038/s42004-022-00796-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2022] [Accepted: 12/09/2022] [Indexed: 01/11/2023] Open
Abstract
It has long been known that irradiation with visible light converts Fe(II) polypyridines from their low-spin (singlet) to high-spin (quintet) state, yet mechanistic interpretation of the photorelaxation remains controversial. Herein, we simulate the full singlet-triplet-quintet dynamics of the [Fe(terpy)2]2+ (terpy = 2,2':6',2"-terpyridine) complex in full dimension, in order to clarify the complex photodynamics. Importantly, we report a branching mechanism involving two sequential processes: a dominant 3MLCT→3MC(3T2g)→3MC(3T1g)→5MC, and a minor 3MLCT→3MC(3T2g)→5MC component. (MLCT = metal-to-ligand charge transfer, MC = metal-centered). While the direct 3MLCT→5MC mechanism is considered as a relevant alternative, we show that it could only be operative, and thus lead to competing pathways, in the absence of 3MC states. The quintet state is populated on the sub-picosecond timescale involving non-exponential dynamics and coherent Fe-N breathing oscillations. The results are in agreement with the available time-resolved experimental data on Fe(II) polypyridines, and fully describe the photorelaxation dynamics.
Collapse
|
26
|
Ogawa T, Sinha N, Pfund B, Prescimone A, Wenger OS. Molecular Design Principles to Elongate the Metal-to-Ligand Charge Transfer Excited-State Lifetimes of Square-Planar Nickel(II) Complexes. J Am Chem Soc 2022; 144:21948-21960. [DOI: 10.1021/jacs.2c08838] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Affiliation(s)
- Tomohiro Ogawa
- Department of Chemistry, University of Basel, St. Johanns-Ring 19, 4056 Basel, Switzerland
| | - Narayan Sinha
- Department of Chemistry, University of Basel, St. Johanns-Ring 19, 4056 Basel, Switzerland
| | - Björn Pfund
- Department of Chemistry, University of Basel, St. Johanns-Ring 19, 4056 Basel, Switzerland
| | - Alessandro Prescimone
- Department of Chemistry, University of Basel, BPR 1096, Mattenstrasse 24a, 4058 Basel, Switzerland
| | - Oliver S. Wenger
- Department of Chemistry, University of Basel, St. Johanns-Ring 19, 4056 Basel, Switzerland
| |
Collapse
|
27
|
Schmid L, Chábera P, Rüter I, Prescimone A, Meyer F, Yartsev A, Persson P, Wenger OS. Borylation in the Second Coordination Sphere of Fe II Cyanido Complexes and Its Impact on Their Electronic Structures and Excited-State Dynamics. Inorg Chem 2022; 61:15853-15863. [PMID: 36167335 PMCID: PMC9554916 DOI: 10.1021/acs.inorgchem.2c01667] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2022]
Abstract
![]()
Second coordination sphere interactions
of cyanido complexes with hydrogen-bonding solvents and Lewis acids
are known to influence their electronic structures, whereby the non-labile
attachment of B(C6F5)3 resulted in
several particularly interesting new compounds lately. Here, we investigate
the effects of borylation on the properties of two FeII cyanido complexes in a systematic manner by comparing five different
compounds and using a range of experimental techniques. Electrochemical
measurements indicate that borylation entails a stabilization of the
FeII-based t2g-like orbitals by up to 1.65 eV,
and this finding was confirmed by Mössbauer spectroscopy. This
change in the electronic structure has a profound impact on the UV–vis
absorption properties of the borylated complexes compared to the non-borylated
ones, shifting their metal-to-ligand charge transfer (MLCT) absorption
bands over a wide range. Ultrafast UV–vis transient absorption
spectroscopy provides insight into how borylation affects the excited-state
dynamics. The lowest metal-centered (MC) excited states become shorter-lived
in the borylated complexes compared to their cyanido analogues by
a factor of ∼10, possibly due to changes in outer-sphere reorganization
energies associated with their decay to the electronic ground state
as a result of B(C6F5)3 attachment
at the cyanido N lone pair. Borylation
in the second coordination sphere of two well-known
FeII cyanido complexes leads to isocyanoborato complexes.
The effects of borylation on their electronic structure and photophysical
properties are thoroughly investigated with a range of experimental
techniques.
Collapse
Affiliation(s)
- Lucius Schmid
- Department of Chemistry, University of Basel, St. Johanns-Ring 19, 4056 Basel, Switzerland
| | - Pavel Chábera
- Department of Chemical Physics, Lund University, P.O. Box 12 4, 22100 Lund, Sweden
| | - Isabelle Rüter
- Institute of Inorganic Chemistry, University of Göttingen, Tammannstrasse 4, D-37077 Göttingen, Germany
| | - Alessandro Prescimone
- Department of Chemistry, University of Basel, BPR 1096, Mattenstrasse 24a, 4058 Basel, Switzerland
| | - Franc Meyer
- Institute of Inorganic Chemistry, University of Göttingen, Tammannstrasse 4, D-37077 Göttingen, Germany
| | - Arkady Yartsev
- Department of Chemical Physics, Lund University, P.O. Box 12 4, 22100 Lund, Sweden
| | - Petter Persson
- Theoretical Chemistry Division, Lund University, P.O. Box 124, 22100 Lund, Sweden
| | - Oliver S Wenger
- Department of Chemistry, University of Basel, St. Johanns-Ring 19, 4056 Basel, Switzerland
| |
Collapse
|
28
|
Montoya-Castillo A, Chen MS, Raj SL, Jung KA, Kjaer KS, Morawietz T, Gaffney KJ, van Driel TB, Markland TE. Optically Induced Anisotropy in Time-Resolved Scattering: Imaging Molecular-Scale Structure and Dynamics in Disordered Media with Experiment and Theory. PHYSICAL REVIEW LETTERS 2022; 129:056001. [PMID: 35960558 DOI: 10.1103/physrevlett.129.056001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2022] [Accepted: 06/29/2022] [Indexed: 06/15/2023]
Abstract
Time-resolved scattering experiments enable imaging of materials at the molecular scale with femtosecond time resolution. However, in disordered media they provide access to just one radial dimension thus limiting the study of orientational structure and dynamics. Here we introduce a rigorous and practical theoretical framework for predicting and interpreting experiments combining optically induced anisotropy and time-resolved scattering. Using impulsive nuclear Raman and ultrafast x-ray scattering experiments of chloroform and simulations, we demonstrate that this framework can accurately predict and elucidate both the spatial and temporal features of these experiments.
Collapse
Affiliation(s)
| | - Michael S Chen
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
| | - Sumana L Raj
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, California 94025, USA
| | - Kenneth A Jung
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
| | - Kasper S Kjaer
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, California 94025, USA
| | - Tobias Morawietz
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
| | - Kelly J Gaffney
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, California 94025, USA
| | - Tim B van Driel
- Linac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - Thomas E Markland
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
| |
Collapse
|
29
|
Ossinger S, Prescimone A, Häussinger D, Wenger OS. Manganese(I) Complex with Monodentate Arylisocyanide Ligands Shows Photodissociation Instead of Luminescence. Inorg Chem 2022; 61:10533-10547. [PMID: 35768069 PMCID: PMC9377510 DOI: 10.1021/acs.inorgchem.2c01438] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Recently reported manganese(I) complexes with chelating arylisocyanide ligands exhibit luminescent metal-to-ligand charge-transfer (MLCT) excited states, similar to ruthenium(II) polypyridine complexes with the same d6 valence electron configuration used for many different applications in photophysics and photochemistry. However, chelating arylisocyanide ligands require substantial synthetic effort, and therefore it seemed attractive to explore the possibility of using more readily accessible monodentate arylisocyanides instead. Here, we synthesized the new Mn(I) complex [Mn(CNdippPhOMe2)6]PF6 with the known ligand CNdippPhOMe2 = 4-(3,5-dimethoxyphenyl)-2,6-diisopropylphenylisocyanide. This complex was investigated by NMR spectroscopy, single-crystal structure analysis, high-resolution electrospray ionization mass spectrometry (HR-ESI-MS) measurements, IR spectroscopy supported by density functional theory (DFT) calculations, cyclic voltammetry, and time-resolved as well as steady-state UV-vis absorption spectroscopy. The key finding is that the new Mn(I) complex is nonluminescent and instead undergoes arylisocyanide ligand loss during continuous visible laser irradiation into ligand-centered and charge-transfer absorption bands, presumably owed to the population of dissociative d-d excited states. Thus, it seems that chelating bi- or tridentate binding motifs are essential for obtaining emissive MLCT excited states in manganese(I) arylisocyanides. Our work contributes to understanding the basic properties of photoactive first-row transition metal complexes and could help advance the search for alternatives to precious metal-based luminophores, photocatalysts, and sensors.
Collapse
Affiliation(s)
- Sascha Ossinger
- Department
of Chemistry, University of Basel, St. Johanns-Ring 19, 4056 Basel, Switzerland
| | - Alessandro Prescimone
- Department
of Chemistry, University of Basel, Mattenstrasse 24a, 4058 Basel, Switzerland
| | - Daniel Häussinger
- Department
of Chemistry, University of Basel, St. Johanns-Ring 19, 4056 Basel, Switzerland
| | - Oliver S. Wenger
- Department
of Chemistry, University of Basel, St. Johanns-Ring 19, 4056 Basel, Switzerland
| |
Collapse
|
30
|
Zederkof DB, Møller KB, Nielsen MM, Haldrup K, González L, Mai S. Resolving Femtosecond Solvent Reorganization Dynamics in an Iron Complex by Nonadiabatic Dynamics Simulations. J Am Chem Soc 2022; 144:12861-12873. [PMID: 35776920 PMCID: PMC9305979 DOI: 10.1021/jacs.2c04505] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
Abstract
![]()
The ultrafast dynamical
response of solute–solvent interactions
plays a key role in transition metal complexes, where charge transfer
states are ubiquitous. Nonetheless, there exist very few excited-state
simulations of transition metal complexes in solution. Here, we carry
out a nonadiabatic dynamics study of the iron complex [Fe(CN)4(bpy)]2– (bpy = 2,2′-bipyridine)
in explicit aqueous solution. Implicit solvation models were found
inadequate for reproducing the strong solvatochromism in the absorption
spectra. Instead, direct solute–solvent interactions, in the
form of hydrogen bonds, are responsible for the large observed solvatochromic
shift and the general dynamical behavior of the complex in water.
The simulations reveal an overall intersystem crossing time scale
of 0.21 ± 0.01 ps and a strong reliance of this process
on nuclear motion. A charge transfer character analysis shows a branched
decay mechanism from the initially excited singlet metal-to-ligand
charge transfer (1MLCT) states to triplet states of 3MLCT and metal-centered (3MC) character. We also
find that solvent reorganization after excitation is ultrafast, on
the order of 50 fs around the cyanides and slower around the
bpy ligand. In contrast, the nuclear vibrational dynamics, in the
form of Fe–ligand bond changes, takes place on slightly longer
time scales. We demonstrate that the surprisingly fast solvent reorganizing
should be observable in time-resolved X-ray solution scattering experiments,
as simulated signals show strong contributions from the solute–solvent
scattering cross term. Altogether, the simulations paint a comprehensive
picture of the coupled and concurrent electronic, nuclear, and solvent
dynamics and interactions in the first hundreds of femtoseconds after
excitation.
Collapse
Affiliation(s)
- Diana Bregenholt Zederkof
- Department of Physics, Technical University of Denmark, Fysikvej, bygning 307, 2800 Kongens Lyngby, Denmark.,Scientific Instrument Femtosecond X-ray Experiments, European XFEL GmbH, Holzkoppel 4, 22869 Schenefeld, Germany
| | - Klaus B Møller
- Department of Chemistry, Technical University of Denmark, Kemitorvet, bygning 207, 2800 Kongens Lyngby, Denmark
| | - Martin M Nielsen
- Department of Physics, Technical University of Denmark, Fysikvej, bygning 307, 2800 Kongens Lyngby, Denmark
| | - Kristoffer Haldrup
- Department of Physics, Technical University of Denmark, Fysikvej, bygning 307, 2800 Kongens Lyngby, Denmark
| | - Leticia González
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria
| | - Sebastian Mai
- Institute of Theoretical Chemistry, Faculty of Chemistry, University of Vienna, Währinger Straße 17, 1090 Vienna, Austria
| |
Collapse
|
31
|
Müller C, Pascher T, Eriksson A, Chabera P, Uhlig J. KiMoPack: A python Package for Kinetic Modeling of the Chemical Mechanism. J Phys Chem A 2022; 126:4087-4099. [PMID: 35700393 PMCID: PMC9251768 DOI: 10.1021/acs.jpca.2c00907] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
![]()
Herein, we present
KiMoPack, an analysis tool for the kinetic modeling of transient spectroscopic data. KiMoPack
enables a state-of-the-art analysis routine including data preprocessing
and standard fitting (global analysis), as well as fitting of complex
(target) kinetic models, interactive viewing of (fit) results, and
multiexperiment analysis via user accessible functions and a graphical
user interface (GUI) enhanced interface. To facilitate its use, this
paper guides the user through typical operations covering a wide range
of analysis tasks, establishes a typical workflow and is bridging
the gap between ease of use for less experienced users and introducing
the advanced interfaces for experienced users. KiMoPack is open source
and provides a comprehensive front-end for preprocessing, fitting
and plotting of 2-dimensional data that simplifies the access to a
powerful python-based data-processing system
and forms the foundation for a well documented, reliable, and reproducible
data analysis.
Collapse
Affiliation(s)
- Carolin Müller
- Institute for Physical Chemistry, Friedrich Schiller University Jena, Helmholtzweg 4, 07743 Jena, Germany.,Leibniz Institute of Photonic Technology (IPHT) Jena, Albert-Einstein-Strasse 9, 07745 Jena, Germany
| | - Torbjörn Pascher
- Department of Chemical Physics, Lund University, SE-22100 Lund, Sweden
| | - Axl Eriksson
- Department of Chemical Physics, Lund University, SE-22100 Lund, Sweden
| | - Pavel Chabera
- Department of Chemical Physics, Lund University, SE-22100 Lund, Sweden
| | - Jens Uhlig
- Department of Chemical Physics, Lund University, SE-22100 Lund, Sweden
| |
Collapse
|
32
|
Zulfikri H, Pápai M, Dohn AO. Simulating the solvation structure of low- and high-spin [Fe(bpy) 3] 2+: long-range dispersion and many-body effects. Phys Chem Chem Phys 2022; 24:16655-16670. [PMID: 35766396 DOI: 10.1039/d2cp00892k] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
When characterizing transition metal complexes and their functionalities, the importance of including the solvent as an active participant is becoming more and more apparent. Whereas many studies have evaluated long-range dispersion effects inside organic molecules and organometallics, less is known about their role in solvation. Here, we have analysed the components within solute-solvent and solvent-solvent interactions of one of the most studied iron-based photoswitch model systems, in two spin states. We find that long-range dispersion effects modulate the coordination significantly, and that this is accurately captured by density functional theory models including dispersion corrections. We furthermore correlate gas-phase relaxed complex-water clusters to thermally averaged molecular densities. This shows how the gas-phase interactions translate to solution structure, quantified through 3D molecular densities, angular distributions, and radial distribution functions. We show that finite-size simulation cells can cause the radial distribution functions to have artificially enlarged amplitudes. Finally, we quantify the effects of many-body interactions within the solvent shells, and find that almost a fifth of the total interaction energy of the solute-shell system in the high-spin state comes from many-body contributions, which cannot be captured by by pair-wise additive force field methods.
Collapse
Affiliation(s)
- Habiburrahman Zulfikri
- Science Institute and Faculty of Physical Sciences, University of Iceland, VR-III, Reykjavík 107, Iceland.
| | - Mátyás Pápai
- Department of Chemistry, Technical University of Denmark, Kemitorvet 207, 2800 Kgs. Lyngby, Denmark
| | - Asmus Ougaard Dohn
- Science Institute and Faculty of Physical Sciences, University of Iceland, VR-III, Reykjavík 107, Iceland. .,Department of Physics, Technical University of Denmark, Fysikvej 307, 2800 Kgs. Lyngby, Denmark
| |
Collapse
|
33
|
Sinha N, Pfund B, Wegeberg C, Prescimone A, Wenger OS. Cobalt(III) Carbene Complex with an Electronic Excited-State Structure Similar to Cyclometalated Iridium(III) Compounds. J Am Chem Soc 2022; 144:9859-9873. [PMID: 35623627 PMCID: PMC9490849 DOI: 10.1021/jacs.2c02592] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
![]()
Many organometallic
iridium(III) complexes have photoactive excited
states with mixed metal-to-ligand and intraligand charge transfer
(MLCT/ILCT) character, which form the basis for numerous applications
in photophysics and photochemistry. Cobalt(III) complexes with analogous
MLCT excited-state properties seem to be unknown yet, despite the
fact that iridium(III) and cobalt(III) can adopt identical low-spin
d6 valence electron configurations due to their close chemical
relationship. Using a rigid tridentate chelate ligand (LCNC), in which a central amido π-donor is flanked by two σ-donating
N-heterocyclic carbene subunits, we obtained a robust homoleptic complex
[Co(LCNC)2](PF6), featuring a photoactive
excited state with substantial MLCT character. Compared to the vast
majority of isoelectronic iron(II) complexes, the MLCT state of [Co(LCNC)2](PF6) is long-lived because it
does not deactivate as efficiently into lower-lying metal-centered
excited states; furthermore, it engages directly in photoinduced electron
transfer reactions. The comparison with [Fe(LCNC)2](PF6), as well as structural, electrochemical, and UV–vis
transient absorption studies, provides insight into new ligand design
principles for first-row transition-metal complexes with photophysical
and photochemical properties reminiscent of those known from the platinum
group metals.
Collapse
Affiliation(s)
- Narayan Sinha
- Department of Chemistry, University of Basel, St. Johanns-Ring 19, 4056 Basel, Switzerland
| | - Björn Pfund
- Department of Chemistry, University of Basel, St. Johanns-Ring 19, 4056 Basel, Switzerland
| | - Christina Wegeberg
- Department of Chemistry, University of Basel, St. Johanns-Ring 19, 4056 Basel, Switzerland
| | - Alessandro Prescimone
- Department of Chemistry, University of Basel, BPR 1096, Mattenstrasse 24a, 4058 Basel, Switzerland
| | - Oliver S Wenger
- Department of Chemistry, University of Basel, St. Johanns-Ring 19, 4056 Basel, Switzerland
| |
Collapse
|
34
|
Lee SJ, Kim TW, Kim JG, Yang C, Yun SR, Kim C, Ren Z, Kumarapperuma I, Kuk J, Moffat K, Yang X, Ihee H. Light-induced protein structural dynamics in bacteriophytochrome revealed by time-resolved x-ray solution scattering. SCIENCE ADVANCES 2022; 8:eabm6278. [PMID: 35622911 PMCID: PMC9140987 DOI: 10.1126/sciadv.abm6278] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2021] [Accepted: 04/13/2022] [Indexed: 05/25/2023]
Abstract
Bacteriophytochromes (BphPs) are photoreceptors that regulate a wide range of biological mechanisms via red light-absorbing (Pr)-to-far-red light-absorbing (Pfr) reversible photoconversion. The structural dynamics underlying Pfr-to-Pr photoconversion in a liquid solution phase are not well understood. We used time-resolved x-ray solution scattering (TRXSS) to capture light-induced structural transitions in the bathy BphP photosensory module of Pseudomonas aeruginosa. Kinetic analysis of the TRXSS data identifies three distinct structural species, which are attributed to lumi-F, meta-F, and Pr, connected by time constants of 95 μs and 21 ms. Structural analysis based on molecular dynamics simulations shows that the light activation of PaBphP accompanies quaternary structural rearrangements from an "II"-framed close form of the Pfr state to an "O"-framed open form of the Pr state in terms of the helical backbones. This study provides mechanistic insights into how modular signaling proteins such as BphPs transmit structural signals over long distances and regulate their downstream biological responses.
Collapse
Affiliation(s)
- Sang Jin Lee
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
- Center for Advanced Reaction Dynamics, Institute for Basic Science (IBS), Daejeon 34141, Republic of Korea
| | - Tae Wu Kim
- Department of Chemistry, Mokpo National University, Muan-gun, Jeollanam-do, 58554, Republic of Korea
| | - Jong Goo Kim
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
- Center for Advanced Reaction Dynamics, Institute for Basic Science (IBS), Daejeon 34141, Republic of Korea
| | - Cheolhee Yang
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
- Center for Advanced Reaction Dynamics, Institute for Basic Science (IBS), Daejeon 34141, Republic of Korea
| | - So Ri Yun
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
- Center for Advanced Reaction Dynamics, Institute for Basic Science (IBS), Daejeon 34141, Republic of Korea
| | - Changin Kim
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
- Center for Advanced Reaction Dynamics, Institute for Basic Science (IBS), Daejeon 34141, Republic of Korea
| | - Zhong Ren
- Department of Chemistry, University of Illinois at Chicago, Chicago, IL 60607, USA
| | - Indika Kumarapperuma
- Department of Chemistry, University of Illinois at Chicago, Chicago, IL 60607, USA
| | - Jane Kuk
- Department of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL 60637, USA
| | - Keith Moffat
- Department of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL 60637, USA
| | - Xiaojing Yang
- Department of Chemistry, University of Illinois at Chicago, Chicago, IL 60607, USA
- Department of Ophthalmology and Vision Sciences, University of Illinois at Chicago, Chicago, IL 60607, USA
| | - Hyotcherl Ihee
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
- Center for Advanced Reaction Dynamics, Institute for Basic Science (IBS), Daejeon 34141, Republic of Korea
| |
Collapse
|
35
|
Abstract
In molecular photochemistry, charge-transfer emission is well understood and widely exploited. In contrast, luminescent metal-centered transitions only came into focus in recent years. This gave rise to strongly phosphorescent CrIII complexes with a d3 electronic configuration featuring luminescent metal-centered excited states which are characterized by the flip of a single spin. These so-called spin-flip emitters possess unique properties and require different design strategies than traditional charge-transfer phosphors. In this review, we give a brief introduction to ligand field theory as a framework to understand this phenomenon and outline prerequisites for efficient spin-flip emission including ligand field strength, symmetry, intersystem crossing and common deactivation pathways using CrIII complexes as instructive examples. The recent progress and associated challenges of tuning the energies of emissive excited states and of emerging applications of the unique photophysical properties of spin-flip emitters are discussed. Finally, we summarize the current state-of-the-art and challenges of spin-flip emitters beyond CrIII with d2, d3, d4 and d8 electronic configuration, where we mainly cover pseudooctahedral molecular complexes of V, Mo, W, Mn, Re and Ni, and highlight possible future research opportunities.
Collapse
|
36
|
Pápai M. Toward Simulation of Fe(II) Low-Spin → High-Spin Photoswitching by Synergistic Spin-Vibronic Dynamics. J Chem Theory Comput 2022; 18:1329-1339. [PMID: 35199532 PMCID: PMC8908767 DOI: 10.1021/acs.jctc.1c01184] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
![]()
A new theoretical
approach is presented and applied for the simulation
of Fe(II) low-spin (LS, singlet, t2g6eg0) → high-spin (HS, quintet, t2g4eg2) photoswitching dynamics of the octahedral
model complex [Fe(NCH)6]2+. The utilized synergistic
methodology heavily exploits the strengths of complementary electronic
structure and spin-vibronic dynamics methods. Specifically, we perform
3D quantum dynamics (QD) and full-dimensional trajectory surface hopping
(TSH, in conjunction with a linear vibronic coupling model), with
the modes for QD selected by TSH. We follow a hybrid approach which
is based on the application of time-dependent density functional theory
(TD-DFT) excited-state potential energy surfaces (PESs) and multiconfigurational
second-order perturbation theory (CASPT2) spin–orbit couplings
(SOCs). Our method delivers accurate singlet–triplet–quintet
intersystem crossing (ISC) dynamics, as assessed by comparison to
our recent high-level ab initio simulations and related
time-resolved experimental data. Furthermore, we investigate the capability
of our simulations to identify the location of ISCs. Finally, we assess
the approximation of constant SOCs (calculated at the Franck–Condon
geometry), whose validity has central importance for the combination
of TD-DFT PESs and CASPT2 SOCs. This efficient methodology will have
a key role in simulating LS → HS dynamics for more complicated
cases, involving higher density of states and varying electronic character,
as well as the analysis of ultrafast experiments.
Collapse
Affiliation(s)
- Mátyás Pápai
- Wigner Research Centre for Physics, P.O. Box 49, H-1525 Budapest, Hungary
| |
Collapse
|
37
|
Cebrían C, Pastore M, Monari A, Assfeld X, Gros PC, Haacke S. Ultrafast Spectroscopy of Fe(II) Complexes Designed for Solar Energy Conversion: Current Status and Open Questions. Chemphyschem 2022; 23:e202100659. [DOI: 10.1002/cphc.202100659] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2021] [Revised: 01/22/2022] [Indexed: 11/11/2022]
Affiliation(s)
| | | | | | | | | | - Stefan Haacke
- University of Strasbourg: Universite de Strasbourg IPCMS 23, rue du Loess 67034 Strasbourg FRANCE
| |
Collapse
|
38
|
Kunnus K, Guo M, Biasin E, Larsen CB, Titus CJ, Lee SJ, Nordlund D, Cordones AA, Uhlig J, Gaffney KJ. Quantifying the Steric Effect on Metal-Ligand Bonding in Fe Carbene Photosensitizers with Fe 2p3d Resonant Inelastic X-ray Scattering. Inorg Chem 2022; 61:1961-1972. [PMID: 35029978 DOI: 10.1021/acs.inorgchem.1c03124] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Understanding the electronic structure and chemical bonding of transition metal complexes is important for improving the function of molecular photosensitizers and catalysts. We have utilized X-ray absorption spectroscopy (XAS) and resonant inelastic X-ray scattering (RIXS) at the Fe L3 edge to investigate the electronic structure of two Fe N-heterocyclic carbene complexes with similar chemical structures but different steric effects and contrasting excited-state dynamics: [Fe(bmip)2]2+ and [Fe(btbip)2]2+, bmip = 2,6-bis(3-methyl-imidazole-1-ylidine)pyridine and btbip = 2,6-bis(3-tert-butyl-imidazole-1-ylidene)pyridine. In combination with charge transfer multiplet and ab initio calculations, we quantified how changes in Fe-carbene bond length due to steric effects modify the metal-ligand bonding, including σ/π donation and π back-donation. We find that σ donation is significantly stronger in [Fe(bmip)2]2+, whereas the π back-donation is similar in both complexes. The resulting stronger ligand field and nephelauxetic effect in [Fe(bmip)2]2+ lead to approximately 1 eV destabilization of the quintet metal-centered 5T2g excited state compared to [Fe(btbip)2]2+, providing an explanation for the absence of a photoinduced 5T2g population and a longer metal-to-ligand charge-transfer excited-state lifetime in [Fe(bmip)2]2+. This work demonstrates how combined modeling of XAS and RIXS spectra can be utilized to understand the electronic structure of transition metal complexes governed by correlated electrons and donation/back-donation interactions.
Collapse
Affiliation(s)
- Kristjan Kunnus
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, California 94025, United States.,Institute of Physics, University of Tartu, W. Ostwaldi 1, Tartu EE-50411, Estonia
| | - Meiyuan Guo
- Department of Chemistry, Lund University, Lund SE-22100, Sweden
| | - Elisa Biasin
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, California 94025, United States
| | - Christopher B Larsen
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, California 94025, United States
| | - Charles J Titus
- Department of Physics, Stanford University, Stanford, California 94305, United States
| | - Sang Jun Lee
- SSRL, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Dennis Nordlund
- SSRL, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Amy A Cordones
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, California 94025, United States
| | - Jens Uhlig
- Department of Chemistry, Lund University, Lund SE-22100, Sweden
| | - Kelly J Gaffney
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, California 94025, United States
| |
Collapse
|
39
|
Vogt M, Smolentsev G. Time‐Resolved X‐Ray Spectroscopy to Study Luminophores with Relevance for OLEDs. CHEMPHOTOCHEM 2022. [DOI: 10.1002/cptc.202100180] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Matthias Vogt
- Fakultät für Naturwissenschaften II, Institut für Chemie Martin-Luther-Universität Halle-Wittenberg Kurt-Mothes-Str. 2 06120 Halle (Saale) Germany
| | - Grigory Smolentsev
- Energy and Environment Research Division Paul Scherrer Institute Forschungsstrasse 111 5232 Villigen-PSI Switzerland
| |
Collapse
|
40
|
Gournay L, Chaban I, Mevellec JY, Humbert B, Janod E, Guerin L, Cammarata M, Daro N, Chastanet G, Collet E. Shifting photo-stationary light-induced excited spin state trapping equilibrium towards higher temperature by increasing light fluence. Chem Phys Lett 2022. [DOI: 10.1016/j.cplett.2022.139395] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
|
41
|
Mara MW, Phelan BT, Xie ZL, Kim TW, Hsu DJ, Liu X, Valentine AJS, Kim P, Li X, Adachi SI, Katayama T, Mulfort KL, Chen LX. Unveiling ultrafast dynamics in bridged bimetallic complexes using optical and X-ray transient absorption spectroscopies. Chem Sci 2022; 13:1715-1724. [PMID: 35282628 PMCID: PMC8827017 DOI: 10.1039/d1sc05034f] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Accepted: 01/14/2022] [Indexed: 01/04/2023] Open
Abstract
In photosynthetic systems employing multiple transition metal centers, the properties of charge-transfer states are tuned by the coupling between metal centers. Here, we use ultrafast optical and X-ray spectroscopies to elucidate the effects of metal–metal interactions in a bimetallic tetrapyridophenazine-bridged Os(ii)/Cu(i) complex. Despite having an appropriate driving force for Os-to-Cu hole transfer in the Os(ii) moiety excited state, no such charge transfer was observed. However, excited-state coupling between the metal centers is present, evidenced by variations in the Os MLCT lifetime depending on the identity of the opposite metal center. This coupling results in concerted coherent vibrations appearing in the relaxation kinetics of the MLCT states for both Cu and Os centers. These vibrations are dominated by metal–ligand contraction at the Cu/Os centers, which are in-phase and linked through the conjugated bridging ligand. This study shows how vibronic coupling between transition metal centers affects the ultrafast dynamics in bridged, multi-metallic systems from the earliest times after photoexcitation to excited-state decay, presenting avenues for tuning charge-transfer states through judicious choice of metal/ligand groups. In photosynthetic systems employing multiple transition metal centers, the properties of charge-transfer states are tuned by the coupling between metal centers.![]()
Collapse
Affiliation(s)
- Michael W. Mara
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60437, USA
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, USA
| | - Brian T. Phelan
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60437, USA
| | - Zhu-Lin Xie
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60437, USA
| | - Tae Wu Kim
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60437, USA
| | - Darren J. Hsu
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, USA
| | - Xiaolin Liu
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
| | | | - Pyosang Kim
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60437, USA
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, USA
| | - Xiaosong Li
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
| | - Shin-ichi Adachi
- Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), 1-1 Oho, Tsukuba, Ibaraki 305-0801, Japan
- Department of Materials Structure Science, School of High Energy Accelerator Science, The Graduate University for Advanced Studies, 1-1 Oho, Tsukuba, Ibaraki 305-0801, Japan
| | - Tetsuo Katayama
- Japan Synchrotron Radiation Research Institute, Kouto 1-1-1, Sayo, Hyogo 679-5198, Japan
- RIKEN SPring-8 Center, 1-1-1 Kouto, Sayo, Hyogo 679-5148, Japan
| | - Karen L. Mulfort
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60437, USA
| | - Lin X. Chen
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60437, USA
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, USA
| |
Collapse
|
42
|
Choi EH, Lee Y, Heo J, Ihee H. Reaction dynamics studied via femtosecond X-ray liquidography at X-ray free-electron lasers. Chem Sci 2022; 13:8457-8490. [PMID: 35974755 PMCID: PMC9337737 DOI: 10.1039/d2sc00502f] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2022] [Accepted: 06/06/2022] [Indexed: 02/04/2023] Open
Abstract
X-ray free-electron lasers (XFELs) provide femtosecond X-ray pulses suitable for pump–probe time-resolved studies with a femtosecond time resolution. Since the advent of the first XFEL in 2009, recent years have witnessed a great number of applications with various pump–probe techniques at XFELs. Among these, time-resolved X-ray liquidography (TRXL) is a powerful method for visualizing structural dynamics in the liquid solution phase. Here, we classify various chemical and biological molecular systems studied via femtosecond TRXL (fs-TRXL) at XFELs, depending on the focus of the studied process, into (i) bond cleavage and formation, (ii) charge distribution and electron transfer, (iii) orientational dynamics, (iv) solvation dynamics, (v) coherent nuclear wavepacket dynamics, and (vi) protein structural dynamics, and provide a brief review on each category. We also lay out a plausible roadmap for future fs-TRXL studies for areas that have not been explored yet. Femtosecond X-ray liquidography using X-ray free-electron lasers (XFELs) visualizes various aspects of reaction dynamics.![]()
Collapse
Affiliation(s)
- Eun Hyuk Choi
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea
- KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea
- Center for Advanced Reaction Dynamics, Institute for Basic Science (IBS), Daejeon, 34141, Republic of Korea
| | - Yunbeom Lee
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea
- KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea
- Center for Advanced Reaction Dynamics, Institute for Basic Science (IBS), Daejeon, 34141, Republic of Korea
| | - Jun Heo
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea
- KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea
- Center for Advanced Reaction Dynamics, Institute for Basic Science (IBS), Daejeon, 34141, Republic of Korea
| | - Hyotcherl Ihee
- Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea
- KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea
- Center for Advanced Reaction Dynamics, Institute for Basic Science (IBS), Daejeon, 34141, Republic of Korea
| |
Collapse
|
43
|
Larsen CB, Braun JD, Lozada IB, Kunnus K, Biasin E, Kolodziej C, Burda C, Cordones AA, Gaffney KJ, Herbert DE. Reduction of Electron Repulsion in Highly Covalent Fe-Amido Complexes Counteracts the Impact of a Weak Ligand Field on Excited-State Ordering. J Am Chem Soc 2021; 143:20645-20656. [PMID: 34851636 DOI: 10.1021/jacs.1c06429] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
The ability to access panchromatic absorption and long-lived charge-transfer (CT) excited states is critical to the pursuit of abundant-metal molecular photosensitizers. Fe(II) complexes supported by benzannulated diarylamido ligands have been reported to broadly absorb visible light with nanosecond CT excited state lifetimes, but as amido donors exert a weak ligand field, this defies conventional photosensitizer design principles. Here, we report an aerobically stable Fe(II) complex of a phenanthridine/quinoline diarylamido ligand, Fe(ClL)2, with panchromatic absorption and a 3 ns excited-state lifetime. Using X-ray absorption spectroscopy (XAS) and resonant inelastic X-ray scattering (RIXS) at the Fe L-edge and N K-edge, we experimentally validate the strong Fe-Namido orbital mixing in Fe(ClL)2 responsible for the panchromatic absorption and demonstrate a previously unreported competition between ligand-field strength and metal-ligand (Fe-Namido) covalency that stabilizes the 3CT state over the lowest energy triplet metal-centered (3MC) state in the ground-state geometry. Single-crystal X-ray diffraction (XRD) and density functional theory (DFT) suggest that formation of this CT state depopulates an orbital with Fe-Namido antibonding character, causing metal-ligand bonds to contract and accentuating the geometric differences between CT and MC excited states. These effects diminish the driving force for electron transfer to metal-centered excited states and increase the intramolecular reorganization energy, critical properties for extending the lifetime of CT excited states. These findings highlight metal-ligand covalency as a novel design principle for elongating excited state lifetimes in abundant metal photosensitizers.
Collapse
Affiliation(s)
- Christopher B Larsen
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Stanford University, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Jason D Braun
- Department of Chemistry and the Manitoba Institute for Materials, University of Manitoba, 144 Dysart Road, Winnipeg, MB R3T 2N2, Canada
| | - Issiah B Lozada
- Department of Chemistry and the Manitoba Institute for Materials, University of Manitoba, 144 Dysart Road, Winnipeg, MB R3T 2N2, Canada
| | - Kristjan Kunnus
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Stanford University, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Elisa Biasin
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Stanford University, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Charles Kolodziej
- Department of Chemistry, Case Western Reserve University, 10900 Euclid Avenue, Cleveland, Ohio 44106, United States
| | - Clemens Burda
- Department of Chemistry, Case Western Reserve University, 10900 Euclid Avenue, Cleveland, Ohio 44106, United States
| | - Amy A Cordones
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Stanford University, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Kelly J Gaffney
- Stanford PULSE Institute, SLAC National Accelerator Laboratory, Stanford University, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - David E Herbert
- Department of Chemistry and the Manitoba Institute for Materials, University of Manitoba, 144 Dysart Road, Winnipeg, MB R3T 2N2, Canada
| |
Collapse
|
44
|
Shari'ati Y, Vura-Weis J. Ballistic Δ S = 2 intersystem crossing in a cobalt cubane following ligand-field excitation probed by extreme ultraviolet spectroscopy. Phys Chem Chem Phys 2021; 23:26990-26996. [PMID: 34842876 DOI: 10.1039/d1cp04136c] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Femtosecond M2,3-edge X-ray absorption near-edge structure (XANES) spectroscopy is used to probe the excited-state dynamics of the cobalt cubane [CoIII4O4](OAc)4(py)4 (OAc = acetate, py = pyridine), a model for water oxidation catalysts. After ligand-field excitation, intersystem crossing (ISC) to a metal-centered quintet occurs in 38 fs. 30% of the hot quintet undergoes ballistic back-ISC directly to the singlet ground state, with the remainder relaxing to a long-lived triplet.
Collapse
Affiliation(s)
- Yusef Shari'ati
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
| | - Josh Vura-Weis
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
| |
Collapse
|
45
|
Ahoulou S, Vilà N, Pillet S, Carteret C, Schaniel D, Walcarius A. Multi-stimuli Photo and Redox-active Nanostructured Mesoporous Silica Films on Transparent Electrodes. Chemphyschem 2021; 22:2464-2477. [PMID: 34708493 DOI: 10.1002/cphc.202100608] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2021] [Revised: 09/24/2021] [Indexed: 11/12/2022]
Abstract
Silica matrices hosting transition metal guest complexes may offer remarkable platforms for the development of advanced functional devices. We report here the elaboration of ordered and vertically oriented mesoporous silica thin films containing covalently attached tris(bipyridine)iron derivatives using a combination of electrochemically assisted self-assembly (EASA) method and Huisgen cycloaddition reaction. Such a versatile approach is primarily used to bind nitrogen-based chelating ligands such as (4-[(2-propyn-1-yloxy)]4'-methyl-2,2'-bypiridine, bpy') inside the nanochannels. Further derivatization of the bpy'-functionalized silica thin films is then achieved via a subsequent in-situ complexation step to generate [Fe(bpy)2 (bpy')]2+ inside the mesopore channels. After giving spectroscopic evidences for the presence of such complexes in the functionalized film, electrochemistry is used to transform the confined diamagnetic (S=0) F e L S b p y 2 b p y ' 2 + species to paramagnetic (S=1/2) oxidized F e L S b p y 2 b p y ' 3 + species in a reversible way, while blue light irradiation (λ=470 nm) enables populating the short-lived paramagnetic (S=2) F e H S b p y 2 b p y ' 2 + excited state. [Fe(bpy)2 (bpy')]2+ -functionalized ordered films are therefore both electro- and photo-active through the manipulation of the oxidation state and spin state of the confined complexes, paving the way for their integration in optoelectronic devices.
Collapse
Affiliation(s)
- Samuel Ahoulou
- Université de Lorraine, CNRS, LCPME UMR 7564, 54000, Nancy, France.,Université de Lorraine, CRM2 UMR 7036, 54000, Nancy, France
| | - Neus Vilà
- Université de Lorraine, CNRS, LCPME UMR 7564, 54000, Nancy, France
| | | | - Cédric Carteret
- Université de Lorraine, CNRS, LCPME UMR 7564, 54000, Nancy, France
| | | | - Alain Walcarius
- Université de Lorraine, CNRS, LCPME UMR 7564, 54000, Nancy, France
| |
Collapse
|
46
|
Zymaková A, Albrecht M, Antipenkov R, Špaček A, Karatodorov S, Hort O, Andreasson J, Uhlig J. First experiments with a water-jet plasma X-ray source driven by the novel high-power-high-repetition rate L1 Allegra laser at ELI Beamlines. JOURNAL OF SYNCHROTRON RADIATION 2021; 28:1778-1785. [PMID: 34738931 PMCID: PMC8570212 DOI: 10.1107/s1600577521008729] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/07/2021] [Accepted: 08/20/2021] [Indexed: 06/13/2023]
Abstract
ELI Beamlines is a rapidly progressing pillar of the pan-European Extreme Light Infrastructure (ELI) project focusing on the development and deployment of science driven by high-power lasers for user operations. This work reports the results of a commissioning run of a water-jet plasma X-ray source driven by the L1 Allegra laser, outlining the current capabilities and future potential of the system. The L1 Allegra is one of the lasers developed in-house at ELI Beamlines, designed to be able to reach a pulse energy of 100 mJ at a 1 kHz repetition rate with excellent beam properties. The water-jet plasma X-ray source driven by this laser opens opportunities for new pump-probe experiments with sub-picosecond temporal resolution and inherent synchronization between pump and probe pulses.
Collapse
Affiliation(s)
- Anna Zymaková
- Structural Dynamics, ELI Beamlines, Za Radnici 835, Dolni Brezany 25241, Czech Republic
| | - Martin Albrecht
- X-ray sources, ELI Beamlines, Za Radnici 835, Dolni Brezany 25241, Czech Republic
| | - Roman Antipenkov
- L1 Allegra Laser, ELI Beamlines, Za Radnici 835, Dolni Brezany 25241, Czech Republic
| | - Alexandr Špaček
- L1 Allegra Laser, ELI Beamlines, Za Radnici 835, Dolni Brezany 25241, Czech Republic
| | - Stefan Karatodorov
- X-ray sources, ELI Beamlines, Za Radnici 835, Dolni Brezany 25241, Czech Republic
| | - Ondřej Hort
- X-ray sources, ELI Beamlines, Za Radnici 835, Dolni Brezany 25241, Czech Republic
| | - Jakob Andreasson
- Structural Dynamics, ELI Beamlines, Za Radnici 835, Dolni Brezany 25241, Czech Republic
| | - Jens Uhlig
- Division of Chemical Physics, Lund University, Box 117, Lund 22100, Sweden
| |
Collapse
|
47
|
Ki H, Choi S, Kim J, Choi EH, Lee S, Lee Y, Yoon K, Ahn CW, Ahn DS, Lee JH, Park J, Eom I, Kim M, Chun SH, Kim J, Ihee H, Kim J. Optical Kerr Effect of Liquid Acetonitrile Probed by Femtosecond Time-Resolved X-ray Liquidography. J Am Chem Soc 2021; 143:14261-14273. [PMID: 34455778 DOI: 10.1021/jacs.1c06088] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
Optical Kerr effect (OKE) spectroscopy is a method that measures the time-dependent change of the birefringence induced by an optical laser pulse using another optical laser pulse and has been used often to study the ultrafast dynamics of molecular liquids. Here we demonstrate an alternative method, femtosecond time-resolved X-ray liquidography (fs-TRXL), where the microscopic structural motions related to the OKE response can be monitored using a different type of probe, i.e., X-ray solution scattering. By applying fs-TRXL to acetonitrile and a dye solution in acetonitrile, we demonstrate that different types of molecular motions around photoaligned molecules can be resolved selectively, even without any theoretical modeling, based on the anisotropy of two-dimensional scattering patterns and extra structural information contained in the q-space scattering data. Specifically, the dynamics of reorientational (libration and orientational diffusion) and translational (interaction-induced motion) motions are captured separately by anisotropic and isotropic scattering signals, respectively. Furthermore, the two different types of reorientational motions are distinguished from each other by their own characteristic scattering patterns and time scales. The measured time-resolved scattering signals are in excellent agreement with the simulated scattering signals based on a molecular dynamics simulation for plausible molecular configurations, providing the detailed structural description of the OKE response in liquid acetonitrile.
Collapse
Affiliation(s)
- Hosung Ki
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea.,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon 34141, Republic of Korea
| | - Seungjoo Choi
- Department of Chemistry, Inha University, 100 Inha-ro, Michuhol-gu, Incheon 22212, Republic of Korea
| | - Jungmin Kim
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea.,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon 34141, Republic of Korea
| | - Eun Hyuk Choi
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea.,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon 34141, Republic of Korea
| | - Seonggon Lee
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea.,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon 34141, Republic of Korea
| | - Yunbeom Lee
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea.,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon 34141, Republic of Korea
| | - Kihwan Yoon
- Department of Chemistry, The Catholic University of Korea, Bucheon 14662, Republic of Korea
| | - Chi Woo Ahn
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea.,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon 34141, Republic of Korea
| | - Doo-Sik Ahn
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea.,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon 34141, Republic of Korea
| | - Jae Hyuk Lee
- Pohang Accelerator Laboratory, Pohang 37673, Republic of Korea
| | - Jaeku Park
- Pohang Accelerator Laboratory, Pohang 37673, Republic of Korea
| | - Intae Eom
- Pohang Accelerator Laboratory, Pohang 37673, Republic of Korea
| | - Minseok Kim
- Pohang Accelerator Laboratory, Pohang 37673, Republic of Korea
| | - Sae Hwan Chun
- Pohang Accelerator Laboratory, Pohang 37673, Republic of Korea
| | - Joonghan Kim
- Department of Chemistry, The Catholic University of Korea, Bucheon 14662, Republic of Korea
| | - Hyotcherl Ihee
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea.,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon 34141, Republic of Korea
| | - Jeongho Kim
- Department of Chemistry, Inha University, 100 Inha-ro, Michuhol-gu, Incheon 22212, Republic of Korea
| |
Collapse
|
48
|
Lee SJ, Kim Y, Kim TW, Yang C, Thamilselvan K, Jeong H, Hyun J, Ihee H. Reversible molecular motional switch based on circular photoactive protein oligomers exhibits unexpected photo-induced contraction. CELL REPORTS. PHYSICAL SCIENCE 2021; 2:100512. [PMID: 35509376 PMCID: PMC9062587 DOI: 10.1016/j.xcrp.2021.100512] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
Molecular switches alterable between two stable states by environmental stimuli, such as light and temperature, offer the potential for controlling biological functions. Here, we report a circular photoswitchable protein complex made of multiple protein molecules that can rapidly and reversibly switch with significant conformational changes. The structural and photochromic properties of photoactive yellow protein (PYP) are harnessed to construct circular oligomer PYPs (coPYPs) of desired sizes. Considering the light-induced N-terminal protrusion of monomer PYP, we expected coPYPs would expand upon irradiation, but time-resolved X-ray scattering data reveal that the late intermediate has a pronounced light-induced contraction motion. This work not only provides an approach to engineering a novel protein-based molecular switch based on circular oligomers of well-known protein units but also demonstrates the importance of characterizing the structural dynamics of designed molecular switches.
Collapse
Affiliation(s)
- Sang Jin Lee
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
- Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon 34141, Republic of Korea
- These authors contributed equally
| | - Youngmin Kim
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
- Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon 34141, Republic of Korea
- These authors contributed equally
| | - Tae Wu Kim
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
- Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon 34141, Republic of Korea
| | - Cheolhee Yang
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
- Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon 34141, Republic of Korea
| | - Kamatchi Thamilselvan
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
- Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon 34141, Republic of Korea
| | - Hyeongseop Jeong
- Center for Research Equipment, Korea Basic Science Institute (KBSI), Cheongju-si, Chungcheongbuk-do 28119, Republic of Korea
| | - Jaekyung Hyun
- Center for Research Equipment, Korea Basic Science Institute (KBSI), Cheongju-si, Chungcheongbuk-do 28119, Republic of Korea
- Molecular Cryo-Electron Microscopy Unit, Okinawa Institute of Science and Technology (OIST), Okinawa 904-0495, Japan
| | - Hyotcherl Ihee
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Republic of Korea
- Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon 34141, Republic of Korea
- Lead contact
| |
Collapse
|
49
|
Filming ultrafast roaming-mediated isomerization of bismuth triiodide in solution. Nat Commun 2021; 12:4732. [PMID: 34354075 PMCID: PMC8342516 DOI: 10.1038/s41467-021-25070-z] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2021] [Accepted: 07/20/2021] [Indexed: 12/19/2022] Open
Abstract
Roaming reaction, defined as a reaction yielding products via reorientational motion in the long-range region (3 - 8 Å) of the potential, is a relatively recently proposed reaction pathway and is now regarded as a universal mechanism that can explain the unimolecular dissociation and isomerization of various molecules. The structural movements of the partially dissociated fragments originating from the frustrated bond fission at the onset of roaming, however, have been explored mostly via theoretical simulations and rarely observed experimentally. Here, we report an investigation of the structural dynamics during a roaming-mediated isomerization reaction of bismuth triiodide (BiI3) in acetonitrile solution using femtosecond time-resolved x-ray liquidography. Structural analysis of the data visualizes the atomic movements during the roaming-mediated isomerization process including the opening of the Bi-Ib-Ic angle and the closing of Ia-Bi-Ib-Ic dihedral angle, each by ~40°, as well as the shortening of the Ib···Ic distance, following the frustrated bond fission.
Collapse
|
50
|
Lee Y, Kim JG, Lee SJ, Muniyappan S, Kim TW, Ki H, Kim H, Jo J, Yun SR, Lee H, Lee KW, Kim SO, Cammarata M, Ihee H. Ultrafast coherent motion and helix rearrangement of homodimeric hemoglobin visualized with femtosecond X-ray solution scattering. Nat Commun 2021; 12:3677. [PMID: 34135339 PMCID: PMC8209046 DOI: 10.1038/s41467-021-23947-7] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Accepted: 05/27/2021] [Indexed: 11/17/2022] Open
Abstract
Ultrafast motion of molecules, particularly the coherent motion, has been intensively investigated as a key factor guiding the reaction pathways. Recently, X-ray free-electron lasers (XFELs) have been utilized to elucidate the ultrafast motion of molecules. However, the studies on proteins using XFELs have been typically limited to the crystalline phase, and proteins in solution have rarely been investigated. Here we applied femtosecond time-resolved X-ray solution scattering (fs-TRXSS) and a structure refinement method to visualize the ultrafast motion of a protein. We succeeded in revealing detailed ultrafast structural changes of homodimeric hemoglobin involving the coherent motion. In addition to the motion of the protein itself, the time-dependent change of electron density of the hydration shell was tracked. Besides, the analysis on the fs-TRXSS data of myoglobin allows for observing the effect of the oligomeric state on the ultrafast coherent motion. Femtosecond time-resolved X-ray solution scattering (fs-TRXSS) measurements provide information on the structural dynamics of proteins in solution. Here, the authors present a structure refinement method for the analysis of fs-TRXSS data and use it to characterise the ultrafast structural changes of homodimeric haemoglobin.
Collapse
Affiliation(s)
- Yunbeom Lee
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea.,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon, Republic of Korea
| | - Jong Goo Kim
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea.,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon, Republic of Korea
| | - Sang Jin Lee
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea.,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon, Republic of Korea
| | - Srinivasan Muniyappan
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea.,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon, Republic of Korea
| | - Tae Wu Kim
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea.,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon, Republic of Korea
| | - Hosung Ki
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea.,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon, Republic of Korea
| | - Hanui Kim
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea.,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon, Republic of Korea
| | - Junbeom Jo
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea.,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon, Republic of Korea
| | - So Ri Yun
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea.,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon, Republic of Korea
| | - Hyosub Lee
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea.,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon, Republic of Korea
| | - Kyung Won Lee
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea.,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon, Republic of Korea
| | - Seong Ok Kim
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea.,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon, Republic of Korea
| | | | - Hyotcherl Ihee
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea. .,Center for Nanomaterials and Chemical Reactions, Institute for Basic Science (IBS), Daejeon, Republic of Korea.
| |
Collapse
|