1
|
Gupta S, Cummings CN, Walker NR, Arunan E. Microwave spectroscopic and computational analyses of the phenylacetylene⋯methanol complex: insights into intermolecular interactions. Phys Chem Chem Phys 2024; 26:19795-19811. [PMID: 38985163 DOI: 10.1039/d4cp01916d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/11/2024]
Abstract
The microwave spectra of five isotopologues of phenylacetylene⋯methanol complex, C6H5CCH⋯CH3OH, C6H5CCH⋯CH3OD, C6H5CCH⋯CD3OD, C6H5CCD⋯CH3OH and C6H5CCH⋯13CH3OH, have been observed through Fourier transform microwave spectroscopy. Rotational spectra unambiguously unveil a specific structural arrangement characterised by dual interactions between the phenylacetylene and methanol. CH3OH serves as a hydrogen bond donor to the acetylenic π-cloud while concurrently accepting a hydrogen bond from the ortho C-H group of the PhAc moiety. The fitted rotational constants align closely with the structural configuration computed at the B3LYP-D3/aug-cc-pVDZ level of theory. The transitions of all isotopologues exhibit doublets owing to the methyl group's internal rotation within the methanol molecule. Comprehensive computational analyses, including natural bond orbital (NBO) analysis, atoms in molecules (AIM) theory, and non-covalent interactions (NCI) index plots, reveal the coexistence of both O-H⋯π and C-H⋯O hydrogen bonds within the complex. Symmetry adapted perturbation theory with density functional theory (SAPT-DFT) calculations performed on the experimentally determined geometry provide an insight into the prominent role of electrostatic interactions in stabilising the overall structural arrangement.
Collapse
Affiliation(s)
- Surabhi Gupta
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore, 560012, India.
| | - Charlotte N Cummings
- Chemistry-School of Natural and Environmental Sciences, Newcastle University, Bedson Building, Newcastle-upon-Tyne NE1 7RU, UK
| | - Nicholas R Walker
- Chemistry-School of Natural and Environmental Sciences, Newcastle University, Bedson Building, Newcastle-upon-Tyne NE1 7RU, UK
| | - Elangannan Arunan
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore, 560012, India.
| |
Collapse
|
2
|
Zimmermann C, Dorst AC, Suhm MA. Raising the benchmark potential of a simple alcohol-ketone intermolecular balance. Phys Chem Chem Phys 2022; 25:384-391. [PMID: 36477454 DOI: 10.1039/d2cp05141a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
Abstract
2-Butanone offers two hydrogen bond docking variants to a solvating methanol which are cleanly separated by supersonic jet infrared absorption spectroscopy in the OH-stretching range, resolving earlier action spectroscopy indeterminacies for this elementary case of an intermolecular alcohol-ketone balance. The solvent preference for the shorter chain side is unambiguously derived from the spectra of homologous compounds. It is analysed in terms of competing steric and dispersion interactions and the resulting energy differences across a low interconversion barrier. Fortuitous cancellations are discussed and quantitative energy deficiencies of the employed DFT approaches are suggested. Some benchmarkable experimental observations: at low temperature, a single methanol molecule prefers the methyl-sided oxygen lone pair of 2-butanone over the ethyl-sided lone pair by 1-2 kJ mol-1, the trans butane backbone is conserved in both low-lying isomers, the OH-stretching fundamentals differ by 47(2) cm-1.
Collapse
Affiliation(s)
- Charlotte Zimmermann
- Institute of Physical Chemistry, Georg-August-University Göttingen, Tammannstr. 6, 37077, Göttingen, Germany.
| | - Arved C Dorst
- Institute of Physical Chemistry, Georg-August-University Göttingen, Tammannstr. 6, 37077, Göttingen, Germany.
| | - Martin A Suhm
- Institute of Physical Chemistry, Georg-August-University Göttingen, Tammannstr. 6, 37077, Göttingen, Germany.
| |
Collapse
|
3
|
Halogens in Acetophenones Direct the Hydrogen Bond Docking Preference of Phenol via Stacking Interactions. Molecules 2021; 26:molecules26164883. [PMID: 34443471 PMCID: PMC8400467 DOI: 10.3390/molecules26164883] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Revised: 08/05/2021] [Accepted: 08/09/2021] [Indexed: 11/17/2022] Open
Abstract
Phenol is added to acetophenone (methyl phenyl ketone) and to six of its halogenated derivatives in a supersonic jet expansion to determine the hydrogen bonding preference of the cold and isolated 1:1 complexes by linear infrared spectroscopy. Halogenation is found to have a pronounced effect on the docking site in this intermolecular ketone balance experiment. The spectra unambiguously decide between competing variants of phenyl group stacking due to their differences in hydrogen bond strength. Structures where the phenyl group interaction strongly distorts the hydrogen bond are more difficult to quantify in the experiment. For unsubstituted acetophenone, phenol clearly prefers the methyl side despite a predicted sub-kJ/mol advantage that is nearly independent of zero-point vibrational energy, turning this complex into a challenging benchmark system for electronic structure methods, which include long range dispersion interactions in some way.
Collapse
|
4
|
Gawrilow M, Suhm MA. Quantifying Conformational Isomerism in Chain Molecules by Linear Raman Spectroscopy: The Case of Methyl Esters. Molecules 2021; 26:molecules26154523. [PMID: 34361676 PMCID: PMC8348275 DOI: 10.3390/molecules26154523] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2021] [Revised: 07/19/2021] [Accepted: 07/20/2021] [Indexed: 02/01/2023] Open
Abstract
The conformational preferences of the ester group have the potential to facilitate the large amplitude folding of long alkyl chains in the gas phase. They are monitored by Raman spectroscopy in supersonic jet expansions for the model system methyl butanoate, after establishing a quantitative relationship with quantum-chemical predictions for methyl methanoate. This requires a careful analysis of experimental details, and a simulation of the rovibrational contours for near-symmetric top molecules. The technique is shown to be complementary to microwave spectroscopy in quantifying coexisting conformations. It confirms that a C-O-C(=O)-C-C chain segment can be collapsed into a single all-trans conformation by collisional cooling, whereas alkyl chain isomerism beyond this five-membered chain largely survives the jet expansion. This sets the stage for the investigation of linear alkyl alkanoates in terms of dispersion-induced stretched-chain to hairpin transitions by Raman spectroscopy.
Collapse
|
5
|
Medel R, Suhm MA. Understanding benzyl alcohol aggregation by chiral modification: the pairing step. Phys Chem Chem Phys 2020; 22:25538-25551. [PMID: 33169124 DOI: 10.1039/d0cp04825a] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A combination of linear infrared and Raman spectroscopy in supersonic slit jet expansions is used to clarify the conformational preferences in the dimer of the transiently chiral benzyl alcohol (phenylmethanol) under vacuum isolation. By experimentally exploring close analogies with the permanently chiral 1-phenylethanol, which is conformationally locked in the jet through intramolecular chirality induction, and by computational analysis of their conformational energy landscapes, several conclusions are drawn. The lowest energy dimer is confirmed to be cooperatively OHOHπ-bonded and shown to be homochiral. Its heterochiral counterpart is slightly higher in energy and can be spectrally assigned as a minor constituent. A metastable heterochiral OHπ/OHπ structure with weakly coupled hydrogen bonds is efficiently trapped behind a Ci symmetry-enhanced barrier and can be assigned by IR/Raman mutual exclusion. Its homochiral counterpart is kinetically less stable but might be addressed by rotational spectroscopy. Ratings of standard density functionals with a standard basis set in terms of reproducing these experimental chirality synchronization benchmarks are presented.
Collapse
Affiliation(s)
- Robert Medel
- Institute of Physical Chemistry, University of Goettingen, Tammannstr. 6, 37077 Goettingen, Germany.
| | | |
Collapse
|
6
|
Pinacolone-Alcohol Gas-Phase Solvation Balances as Experimental Dispersion Benchmarks. Molecules 2020; 25:molecules25215095. [PMID: 33153022 PMCID: PMC7662480 DOI: 10.3390/molecules25215095] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2020] [Revised: 10/28/2020] [Accepted: 10/28/2020] [Indexed: 01/05/2023] Open
Abstract
The influence of distant London dispersion forces on the docking preference of alcohols of different size between the two lone electron pairs of the carbonyl group in pinacolone was explored by infrared spectroscopy of the OH stretching fundamental in supersonic jet expansions of 1:1 solvate complexes. Experimentally, no pronounced tendency of the alcohol to switch from the methyl to the bulkier tert-butyl side with increasing size was found. In all cases, methyl docking dominates by at least a factor of two, whereas DFT-optimized structures suggest a very close balance for the larger alcohols, once corrected by CCSD(T) relative electronic energies. Together with inconsistencies when switching from a C4 to a C5 alcohol, this points at deficiencies of the investigated B3LYP and in particular TPSS functionals even after dispersion correction, which cannot be blamed on zero point energy effects. The search for density functionals which describe the harmonic frequency shift, the structural change and the energy difference between the docking isomers of larger alcohols to unsymmetric ketones in a satisfactory way is open.
Collapse
|
7
|
Quesada Moreno MM, Pinacho P, Pérez C, Šekutor M, Schreiner PR, Schnell M. London Dispersion and Hydrogen-Bonding Interactions in Bulky Molecules: The Case of Diadamantyl Ether Complexes. Chemistry 2020; 26:10817-10825. [PMID: 32428323 PMCID: PMC7497036 DOI: 10.1002/chem.202001444] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Revised: 05/12/2020] [Indexed: 02/05/2023]
Abstract
Diadamantyl ether (DAE, C20 H30 O) represents a good model to study the interplay between London dispersion and hydrogen-bond interactions. By using broadband rotational spectroscopy, an accurate experimental structure of the diadamantyl ether monomer is obtained and its aggregates with water and a variety of aliphatic alcohols of increasing size are analyzed. In the monomer, C-H⋅⋅⋅H-C London dispersion attractions between the two adamantyl subunits further stabilize its structure. Water and the alcohol partners bind to diadamantyl ether through hydrogen bonding and non-covalent Owater/alcohol ⋅⋅⋅H-CDAE and C-Halcohol ⋅⋅⋅H-CDAE interactions. Electrostatic contributions drive the stabilization of all the complexes, whereas London dispersion interactions become more pronounced with increasing size of the alcohol. Complexes with dominant dispersion contributions are significantly higher in energy and were not observed in the experiment. The results presented herein shed light on the first steps of microsolvation and aggregation of molecular complexes with London dispersion energy donor (DED) groups and the kind of interactions that control them.
Collapse
Affiliation(s)
- María Mar Quesada Moreno
- Deutsches Elektronen-SynchrotronNotkestr. 8522607HamburgGermany
- Institute of Physical ChemistryChristian-Albrechts-Universität zu KielMax-Eyth-Str. 124118KielGermany
| | - Pablo Pinacho
- Deutsches Elektronen-SynchrotronNotkestr. 8522607HamburgGermany
- Institute of Physical ChemistryChristian-Albrechts-Universität zu KielMax-Eyth-Str. 124118KielGermany
| | - Cristóbal Pérez
- Deutsches Elektronen-SynchrotronNotkestr. 8522607HamburgGermany
- Institute of Physical ChemistryChristian-Albrechts-Universität zu KielMax-Eyth-Str. 124118KielGermany
| | - Marina Šekutor
- Institute of Organic ChemistryJustus Liebig UniversityHeinrich-Buff-Ring 1735392GiessenGermany
| | - Peter R. Schreiner
- Institute of Organic ChemistryJustus Liebig UniversityHeinrich-Buff-Ring 1735392GiessenGermany
| | - Melanie Schnell
- Deutsches Elektronen-SynchrotronNotkestr. 8522607HamburgGermany
- Institute of Physical ChemistryChristian-Albrechts-Universität zu KielMax-Eyth-Str. 124118KielGermany
| |
Collapse
|
8
|
Zimmermann C, Gottschalk HC, Suhm MA. Three-dimensional docking of alcohols to ketones: an experimental benchmark based on acetophenone solvation energy balances. Phys Chem Chem Phys 2020; 22:2870-2877. [PMID: 31913366 DOI: 10.1039/c9cp06128b] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
The two hydrogen bond solvation sites exhibited by the carbonyl group in acetophenone are influenced by alkylation of the methyl group in both the acetophenone and in the prototype solvent methanol, largely due to London dispersion forces. Phenyl docking and alkyl docking preferences can be realized at will by appropriate substitution. In particular, cyclopropylation helps to stabilize the opposite phenyl docking site. In all cases, the energy gap is small enough to allow for a simultaneous detection even under low temperature conditions. This density functional prediction is checked experimentally by jet FTIR spectroscopy and largely confirmed. A spurious out-of-plane solvation preference predicted for cyclopropylphenylketone with tert-butyl alcohol by B3LYP-D3 calculations is not confirmed experimentally. It is unlikely that this discrepancy is due to zero-point energy effects. Instead, the second most stable alkyl-side solvation motif predicted with a more in-plane coordination is found in the jet expansion. Overall, the ability of carbonyl solvation balances to benchmark subtle electronic structure effects for non-covalent interactions without major nuclear motion corrections is supported.
Collapse
Affiliation(s)
- C Zimmermann
- Georg-August-Universität Göttingen, Tammannstraße 6, 37077 Göttingen, Germany.
| | - H C Gottschalk
- Georg-August-Universität Göttingen, Tammannstraße 6, 37077 Göttingen, Germany.
| | - M A Suhm
- Georg-August-Universität Göttingen, Tammannstraße 6, 37077 Göttingen, Germany.
| |
Collapse
|
9
|
Chen J, Zheng Y, Melli A, Spada L, Lu T, Feng G, Gou Q, Barone V, Puzzarini C. Theory meets experiment for elucidating the structure and stability of non-covalent complexes: water–amine interaction as a proof of concept. Phys Chem Chem Phys 2020; 22:5024-5032. [DOI: 10.1039/c9cp06768j] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
A joint experimental-theoretical spectroscopic investigation has focused on a better understanding of the nature of weak, non-covalent interactions in amine-water model systems.
Collapse
Affiliation(s)
- Junhua Chen
- Department of Chemistry
- School of Chemistry and Chemical Engineering
- Chongqing University
- 401331 Chongqing
- China
| | - Yang Zheng
- Department of Chemistry
- School of Chemistry and Chemical Engineering
- Chongqing University
- 401331 Chongqing
- China
| | - Alessio Melli
- Department of Chemistry “Giacomo Ciamician”
- University of Bologna
- 40126 Bologna
- Italy
| | - Lorenzo Spada
- Department of Chemistry “Giacomo Ciamician”
- University of Bologna
- 40126 Bologna
- Italy
- Scuola Normale Superiore
| | - Tao Lu
- Department of Chemistry
- School of Chemistry and Chemical Engineering
- Chongqing University
- 401331 Chongqing
- China
| | - Gang Feng
- Department of Chemistry
- School of Chemistry and Chemical Engineering
- Chongqing University
- 401331 Chongqing
- China
| | - Qian Gou
- Department of Chemistry
- School of Chemistry and Chemical Engineering
- Chongqing University
- 401331 Chongqing
- China
| | | | - Cristina Puzzarini
- Department of Chemistry “Giacomo Ciamician”
- University of Bologna
- 40126 Bologna
- Italy
| |
Collapse
|
10
|
Wang J, Spada L, Chen J, Gao S, Alessandrini S, Feng G, Puzzarini C, Gou Q, Grabow J, Barone V. The Unexplored World of Cycloalkene–Water Complexes: Primary and Assisting Interactions Unraveled by Experimental and Computational Spectroscopy. Angew Chem Int Ed Engl 2019; 58:13935-13941. [DOI: 10.1002/anie.201906977] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2019] [Revised: 07/12/2019] [Indexed: 01/28/2023]
Affiliation(s)
- Juan Wang
- Department of ChemistrySchool of Chemistry and Chemical EngineeringChongqing University Daxuecheng South Rd. 55 401331 Chongqing China
- Institut für Physikalische Chemie & ElektrochemieGottfried-Wilhelm-Leibniz-Universität Hannover Callinstr. 3A 30167 Hannover Germany
| | - Lorenzo Spada
- Dipartimento di Chimica “Giacomo Ciamician”University of Bologna Via Selmi 2 I-40126 Bologna Italy
- Scuola Normale Superiore Piazza dei Cavalieri 7 56126 Pisa Italy
| | - Junhua Chen
- Department of ChemistrySchool of Chemistry and Chemical EngineeringChongqing University Daxuecheng South Rd. 55 401331 Chongqing China
| | - Shuang Gao
- Department of ChemistrySchool of Chemistry and Chemical EngineeringChongqing University Daxuecheng South Rd. 55 401331 Chongqing China
| | | | - Gang Feng
- Department of ChemistrySchool of Chemistry and Chemical EngineeringChongqing University Daxuecheng South Rd. 55 401331 Chongqing China
| | - Cristina Puzzarini
- Dipartimento di Chimica “Giacomo Ciamician”University of Bologna Via Selmi 2 I-40126 Bologna Italy
| | - Qian Gou
- Department of ChemistrySchool of Chemistry and Chemical EngineeringChongqing University Daxuecheng South Rd. 55 401331 Chongqing China
| | - Jens‐Uwe Grabow
- Institut für Physikalische Chemie & ElektrochemieGottfried-Wilhelm-Leibniz-Universität Hannover Callinstr. 3A 30167 Hannover Germany
| | - Vincenzo Barone
- Scuola Normale Superiore Piazza dei Cavalieri 7 56126 Pisa Italy
| |
Collapse
|
11
|
Oswald S, Suhm MA. Soft experimental constraints for soft interactions: a spectroscopic benchmark data set for weak and strong hydrogen bonds. Phys Chem Chem Phys 2019; 21:18799-18810. [PMID: 31453998 DOI: 10.1039/c9cp03651b] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
An experimental benchmark data base on rotational constants, vibrational properties and energy differences for weakly and more strongly hydrogen-bonded complexes and their constituents from the spectroscopic literature is assembled. It is characterized in detail and finally contracted to a more compact, discriminatory set (ENCH-51, for Experimental Non-Covalent Harmonic with 51 entries). The meeting points between theory and experiment consist of equilibrium rotational constants and harmonic frequencies and energies, which are back-corrected from experimental observables and are very easily accessible by quantum chemical calculations. The relative performance of B3LYP-D3, PBE0-D3 and M06-2X density functional theory predictions with a quadruple-zeta basis set is used to illustrate systematic errors, error compensation and selective performance for structural, vibrational and energetical observables. The current focus is on perspectives and different benchmarking methodologies, rather than on a specific theoretical method or a specific class of compounds. Extension of the data base in chemical, observable and quantum chemical method space is encouraged.
Collapse
Affiliation(s)
- Sönke Oswald
- Institut für Physikalische Chemie, Universität Göttingen, Tammannstr. 6, 37077 Göttingen, Germany.
| | - Martin A Suhm
- Institut für Physikalische Chemie, Universität Göttingen, Tammannstr. 6, 37077 Göttingen, Germany.
| |
Collapse
|
12
|
Wang J, Spada L, Chen J, Gao S, Alessandrini S, Feng G, Puzzarini C, Gou Q, Grabow J, Barone V. The Unexplored World of Cycloalkene–Water Complexes: Primary and Assisting Interactions Unraveled by Experimental and Computational Spectroscopy. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201906977] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Juan Wang
- Department of ChemistrySchool of Chemistry and Chemical EngineeringChongqing University Daxuecheng South Rd. 55 401331 Chongqing China
- Institut für Physikalische Chemie & ElektrochemieGottfried-Wilhelm-Leibniz-Universität Hannover Callinstr. 3A 30167 Hannover Germany
| | - Lorenzo Spada
- Dipartimento di Chimica “Giacomo Ciamician”University of Bologna Via Selmi 2 I-40126 Bologna Italy
- Scuola Normale Superiore Piazza dei Cavalieri 7 56126 Pisa Italy
| | - Junhua Chen
- Department of ChemistrySchool of Chemistry and Chemical EngineeringChongqing University Daxuecheng South Rd. 55 401331 Chongqing China
| | - Shuang Gao
- Department of ChemistrySchool of Chemistry and Chemical EngineeringChongqing University Daxuecheng South Rd. 55 401331 Chongqing China
| | | | - Gang Feng
- Department of ChemistrySchool of Chemistry and Chemical EngineeringChongqing University Daxuecheng South Rd. 55 401331 Chongqing China
| | - Cristina Puzzarini
- Dipartimento di Chimica “Giacomo Ciamician”University of Bologna Via Selmi 2 I-40126 Bologna Italy
| | - Qian Gou
- Department of ChemistrySchool of Chemistry and Chemical EngineeringChongqing University Daxuecheng South Rd. 55 401331 Chongqing China
| | - Jens‐Uwe Grabow
- Institut für Physikalische Chemie & ElektrochemieGottfried-Wilhelm-Leibniz-Universität Hannover Callinstr. 3A 30167 Hannover Germany
| | - Vincenzo Barone
- Scuola Normale Superiore Piazza dei Cavalieri 7 56126 Pisa Italy
| |
Collapse
|