Theoretical study on the gas phase reaction of CH2O + NH3: the formation of CH2ONH3, NH2CH2OH, or CH2NH + H2O

Unveiling the chemical kinetics of aminomethanol (NH2CH2OH): insights into O . H and O2 photo-oxidation reactions and formamide dominance

Aminomethanol is released into the atmosphere through various sources, including biomass burning. In this study, we have expounded the chemical kinetics of aminomethanol in the reaction pathways initiated by the hydroxyl radical (O ˙ H) with the aid of ab initio//density functional theory (DFT) i.e., coupled-cluster theory (CCSD(T))//hybrid-DFT (M06-2X/6-311++G (3df, 3pd). We have explored various possible directions of theO ˙ H radical on aminomethanol, as well as the formation of distinct pre-reactive complexes. Our computational findings reveal that the H transfer necessitates activation energies ranging from 4.1 to 6.5 kcal/mol from the -CH2 group, 3.5-6.5 kcal/mol from the -NH2 group and 7-9.3 kcal/mol from the -OH group of three rotational conformers. The H transfer from -CH2, -NH2 and -OH exhibits an estimated total rate constant (k OH) of approximately 1.97 × 10-11 cm3 molecule-1 s-1 at 300 K. The branching fraction analysis indicates a pronounced dominance of C-centered NH2C ˙ HOH radicals with a favorability of 77%, surpassing the N-centeredN ˙ HCH2OH (20%) and O-centered NH2CH2O ˙ (3%) radicals. Moreover, our investigation delves into the oxidation of the prominently favored carbon-centered NH2C ˙ HOH radical through its interaction with atmospheric oxygen molecules. Intriguingly, our findings reveal that formamide (NH2CHO) emerges as the predominant product in the NH2C ˙ HOH + 3O2 reaction, eclipsing alternative outcomes such as amino formic acid (NH2COOH) and formimidic acid (HN = C(H)-OH). At atmospheric conditions pertinent to the troposphere, the branching fraction value for the formation of formamide is about 99%, coupled with a rate constant of 5.5 × 10-12 cm3 molecule-1 s-1. Finally, we have scrutinized the detrimental impact of formamide on the atmosphere. Interaction of formamide with atmospheric hydroxyl radicals could give rise to the production of potentially perilous compounds such as HNCO. Further, unreactedN ˙ HCH2OH radicals may initiate the formation of carcinogenic nitrosamines when reacting with trace N-oxides (namely, NO and NO2). This, in turn, escalates the environmental risk factors.

Can a single ammonia and water molecule enhance the formation of methanimine under tropospheric conditions?: kinetics of •CH2NH2 + O2 (+NH3/H2O)

The aminomethyl (•CH2NH2) radical is generated from the photo-oxidation of methylamine in the troposphere and is an important precursor for new particle formation. The effect of ammonia and water on the gas-phase formation of methanimine (CH2NH) from the •CH2NH2 + O2 reaction is not known. Therefore, in this study, the potential energy surfaces for •CH2NH2 + O2 (+NH3/H2O) were constructed using ab initio//DFT, i.e., coupled-cluster theory (CCSD(T))//hybrid-density functional theory, i.e., M06-2X with the 6-311++G (3df, 3pd) basis set. The Rice-Ramsperger-Kassel-Marcus (RRKM)/master equation (ME) simulation with Eckart's asymmetric tunneling was used to calculate the rate coefficients and branching fractions relevant to the troposphere. The results show 40% formation of CH2NH at the low-pressure (<1 bar) and 100% formation of CH2NH2OO• at the high-pressure limit (HPL) condition. When an ammonia molecule is introduced into the reaction, there is a slight increase in the formation of CH2NH; however, when a water molecule is introduced into the reaction, the increase in the formation of CH2NH was from 40% to ∼80%. The calculated rate coefficient for •CH2NH2 + O2 (+NH3) [1.9 × 10-23 cm3 molecule-1 s-1] and for CH2NH2 + O2 (+H2O) [3.3 × 10-17 cm3 molecule-1 s-1] is at least twelve and six order magnitudes smaller than those for free •CH2NH2 + O2 (2 × 10-11 cm3 molecule-1 s-1 at 298 K) reactions, respectively. Our result is consistent with that of previous experimental and theoretical analysis and in good agreement with its isoelectronic analogous reaction. The work also provides a clear understanding of the formation of tropospheric carcinogenic compounds, i.e., hydrogen cyanide (HCN).

An automated method for graph-based chemical space exploration and transition state finding

Algorithms that automatically explore the chemical space have been limited to chemical systems with a low number of atoms due to expensive involved quantum calculations and the large amount of possible reaction pathways. The method described here presents a novel solution to the problem of chemical exploration by generating reaction networks with heuristics based on chemical theory. First, a second version of the reaction network is determined through molecular graph transformations acting upon functional groups of the reacting. Only transformations that break two chemical bonds and form two new ones are considered, leading to a significant performance enhancement compared to previously presented algorithm. Second, energy barriers for this reaction network are estimated through quantum chemical calculations by a growing string method, which can also identify non-octet species missed during the previous step and further define the reaction network. The proposed algorithm has been successfully applied to five different chemical reactions, in all cases identifying the most important reaction pathways.

A theoretical study on the formation mechanism of carboxylic sulfuric anhydride and its potential role in new particle formation

New particle formation (NPF) is the major source of atmospheric aerosol particles. However, the chemical species involved and the exact mechanism are still unclear. Cycloaddition reaction of SO₃ to carboxylic acids bas been identified as a possible formation mechanism of carboxylic sulfuric anhydrides which may be involved in NPF. Herein, energy profiles for forming diaterpenylic acetate sulfuric anhydride (DTASA) through cycloaddition of SO₃ to diaterpenylic acid acetate (DTAA) and the potential role of DTASA in NPF were studied through computational methods combined with atmospheric cluster dynamics code (ACDC). Gas phase reaction barriers for the two carboxyl groups of DTAA are 0.4 and 0.6 kcal mol⁻¹, respectively, illustrating a feasible formation mechanism for DTASA. According to thermodynamical analysis and dynamical simulations, atmospheric clusters containing DTASA and atmospheric nucleation precursors sulfuric acid (SA), ammonia (NH₃) and dimethylamine (DMA) possess both thermodynamically and dynamically higher stabilities than those of DTAA-contained clusters. Furthermore, DTASA–NH₃ and DTASA–DMA are more stable than SA–NH₃ and SA–DMA, enabling DTASA, even carboxylic sulfuric anhydrides, to become potential participants in the atmospheric NPF process which may hence promote a better understanding of NPF.

Organic acids could improve their nucleation ability through the cycloaddition reaction of SO₃ to generate corresponding carboxylic sulfuric anhydrides which may play a potential role in the atmospheric new particle formation.

Experimental identification of aminomethanol (NH2CH2OH)-the key intermediate in the Strecker Synthesis

The Strecker Synthesis of (a)chiral α-amino acids from simple organic compounds, such as ammonia (NH₃), aldehydes (RCHO), and hydrogen cyanide (HCN) has been recognized as a viable route to amino acids on primordial earth. However, preparation and isolation of the simplest hemiaminal intermediate – the aminomethanol (NH₂CH₂OH)– formed in the Strecker Synthesis to even the simplest amino acid glycine (H₂NCH₂COOH) has been elusive. Here, we report the identification of aminomethanol prepared in low-temperature methylamine (CH₃NH₂) – oxygen (O₂) ices upon exposure to energetic electrons. Isomer-selective photoionization time-of-flight mass spectrometry (PI-ReTOF-MS) facilitated the gas phase detection of aminomethanol during the temperature program desorption (TPD) phase of the reaction products. The preparation and observation of the key transient aminomethanol changes our perception of the synthetic pathways to amino acids and the unexpected kinetic stability in extreme environments.

The Strecker synthesis is considered a viable route to amino acids formation on the primordial Earth. Here the authors succeed in observing its elusive intermediate aminomethanol, formed by insertion of an electronically excited oxygen atom in methylamine and stabilized by an icy matrix, using isomer-selective photoionization time-of-flight mass spectrometry during thermal desorption of the ice mixture.

CH2 + O2: reaction mechanism, biradical and zwitterionic character, and formation of CH2OO, the simplest Criegee intermediate

The singlet and triplet potential surfaces for the title reaction were investigated using the CBS-QB3 level of theory. The wave functions for some species exhibited multireference character and required the CASPT2/6-31+G(d,p) and CASPT2/aug-cc-pVTZ levels of theory to obtain accurate relative energies. A Natural Bond Orbital Analysis showed that triplet ³CH₂OO (the simplest Criegee intermediate) and ³CH₂O₂ (dioxirane) have mostly polar biradical character, while singlet ¹CH₂OO has some zwitterionic character and a planar structure. Canonical variational transition state theory (CVTST) and master equation simulations were used to analyze the reaction system. CVTST predicts that the rate constant for reaction of ¹CH₂ + ³O₂ is more than ten times as fast as the reaction of ³CH₂ (X³B₁) + ³O₂ and the ratio remains almost independent of temperature from 900 K to 3000 K. The master equation simulations predict that at low pressures the ¹CH₂O + ³O product set is dominant at all temperatures and the primary yield of OH radicals is negligible below 600 K, due to competition with other primary reactions in this complex system.

Effect of ammonia and water molecule on OH + CH3OH reaction under tropospheric condition

The rate coefficients for OH + CH3OH and OH + CH3OH (+ X) (X = NH3, H2O) reactions were calculated using microcanonical, and canonical variational transition state theory (CVT) between 200 and 400 K based on potential energy surface constructed using CCSD(T)//M06-2X/6-311++G(3df,3pd). The results show that OH + CH3OH is dominated by the hydrogen atoms abstraction from CH3 position in both free and ammonia/water catalyzed ones. This result is in consistent with previous experimental and theoretical studies. The calculated rate coefficient for the OH + CH3OH (8.8 × 10-13 cm3 molecule-1 s-1), for OH + CH3OH (+ NH3) [1.9 × 10-21 cm3 molecule-1 s-1] and for OH + CH3OH (+ H2O) [8.1 × 10-16 cm3 molecule-1 s-1] at 300 K. The rate coefficient is at least 8 order magnitude [for OH + CH3OH(+ NH3) reaction] and 3 orders magnitude [OH + CH3OH (+ H2O)] are smaller than free OH + CH3OH reaction. Our calculations predict that the catalytic effect of single ammonia and water molecule on OH + CH3OH reaction has no effect under tropospheric conditions because the dominated ammonia and water-assisted reaction depends on ammonia and water concentration, respectively. As a result, the total effective reaction rate coefficients are smaller. The current study provides a comprehensive example of how basic and neutral catalysts effect the most important atmospheric prototype alcohol reactions.

Ab initio rate coefficients for reactions of 2,5-dimethylhexyl isomers with O2: temperature- and pressure-dependent branching ratios

Chemical kinetics of O2-addition to alkyl radicals (R), termed first O2-addition in the oxidation mechanism of alkanes, are of central importance to next-generation combustion strategies designed for operations in the low- to intermediate-temperature region (<1000 K). In the present work, stationary points on potential energy surfaces (PES), temperature- and pressure-dependent rate coefficients, and branching fractions of product formation from R + O2 reactions initiated by the addition of molecular oxygen (3O2) to the three alkyl radicals of a branched alkane, 2,5-dimethylhexane, are reported. The stationary points were determined utilizing ab initio/DFT methods and the reaction energies were computed using the composite CBS-QB3 method. Rice-Ramsperger-Kassel-Marcus (RRKM)/master equation (ME) calculations were employed to compute rate coefficients, from which branching fractions were determined over the pressure range of 10-3-20 atm and the temperature range of 400-900 K on three different surfaces. The quantum chemistry results reveal several distinct features. For the addition of O2 to the tertiary alkyl radical 2,5-dimethylhex-2-yl, the most energetically favorable channel leads to the formation of 2,2,5,5,-tetramethyl-tetrahydrofuran, a cyclic ether intermediate formed coincident with OH in a chain-propagating step from the decomposition of tertiary-tertiary hydroperoxyalkyl (QOOH). On the R + O2 surface of the secondary radical, 2,5-dimethylhex-3-yl, the pathways for the formation of methyl-propanal + iso-butene + OH via concerted C-C and O-O bond scission of tertiary QOOH and that of cyclic ether + OH are the most energetically favorable pathways. The R + O2 surface for the reaction of the primary radical, 2,5-dimethylhex-1-yl, reveals two competitive chain-propagation channels, leading to 2-iso-propyl-4-methyl-tetrahydrofuran + OH and 2,2,5-trimethyltetrahydropyran + OH. Below 100 Torr, the formation of the aforementioned species dominates the respective total R + O2 rate coefficient, while at pressures above 1 atm collisionally stabilized alkylperoxy (ROO) dominates at the temperatures considered here. The results of this study are in very good agreement with the experimentally measured intermediates and products of the 2,5-dimethylhexyl radical + O2 reaction.

Computational studies on the gas phase reaction of methylenimine (CH2NH) with water molecules

In this work, we used quantum chemical methods and chemical kinetic models to answer the question of whether or not formaldehyde (CH2O) and ammonia (NH3) can be produced from gas phase hydration of methylenimine (CH2NH). The potential energy surfaces (PESs) of CH2NH + H2O → CH2O + NH3 and CH2NH + 2H2O → CH2O + NH3 + H2O reactions were computed using CCSD(T)/6-311++G(3d,3pd)//M06-2X/6-311++G(3d,3pd) level. The temperature-and pressure-dependent rate constants were calculated using variational transition state theory (VTST), microcanonical variational transition state theory [Formula: see text] and Rice-Ramsperger-Kassel-Marcus/master equation (RRKM/ME) simulations. The PES along the reaction path forming a weakly bound complex (CH2NH⋯H2O) was located using VTST and [Formula: see text]VTST, however, the PES along the tight transition state was characterized by VTST with small curvature tunneling (SCT) approach. The results show that the formation of CH2NH + H2O → CH2NH⋯H2O is pressure -and temperature-dependent. The calculated atmospheric lifetimes of CH2NH⋯H2O (~ 8 min) are too short to undergo secondary bimolecular reactions with other atmospheric species. Our results suggest that the formation of CH2O and NH3 likely to occur in the combustion of biomass burning but the rate of formation CH2O and NH3 is predicted to be negligible under atmospheric conditions. When a second water molecule is added to the reaction, the results suggest that the rates of formation of CH2O and NH3 remain negligible.

CH3NO as a potential intermediate for early atmospheric HCN: a quantum chemical insight

Hydrogen cyanide (HCN) has played a central role in the production of several biological molecules under prebiotic conditions on primitive Earth. Previously, K. J. Zahnle (J. Geophys. Res.: Atmos., 1986, 91, 2819) and Tian et al. (Earth Planet. Sci. Lett., 2011, 308, 417) emphasized that HCN production in the early Earth's CH₄-rich atmosphere could have been possible through the reaction between active nitrogen atoms (N) and methane photolysis products. Here, we have proposed alternative pathways for the formation of early atmospheric HCN via the decomposition of CH₃NO as an intermediate. In the early Earth's O₂-free atmosphere, CH₃˙ could preferentially attach to NO, which was generated via early atmospheric volcanism or lightning and photochemical processes. We have quantum chemically explored both unimolecular and bimolecular decomposition pathways of CH₃NO via the assistance of another CH₃NO molecule and via H₂O, NH₃, HCl, HCOOH, HNO₃ and H₂SO₄ catalysis. Both energetic and kinetic analyses reveal that H₂SO₄ is more efficient in this regard than other atmospheric species. Overall, it has been suggested that the proposed bimolecular decomposition pathways might have been alternative pathways for the formation of HCN under certain conditions on prebiotic Earth, while the unimolecular decomposition of CH₃NO could lead to the formation of HCN in the high temperature volcanic environment on early Earth.