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Das S, Das S, Singh AK, Datta A. 3-aminoquinoline: a turn-on fluorescent probe for preferential solvation in binary solvent mixtures. Methods Appl Fluoresc 2022; 10. [PMID: 35697038 DOI: 10.1088/2050-6120/ac784d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2022] [Accepted: 06/13/2022] [Indexed: 11/11/2022]
Abstract
3-Aminoquinoline (3AQ) has been used as a fluorescent probe for preferential solvation in hexane-ethanol solvent mixtures. Results of the present experiment have been put into context by comparison with prior observations with 5-aminoquinoline (5AQ) as the probe. 3AQ exhibits a relatively small change of dipole moment (Δμ= 2.2 D) upon photoexcitation, compared to 5AQ (Δμ= 6.1D), which might appear to be a hindrance in the way of its use as a solvation probe. Indeed, the values of parameters like spectral shifts are smaller for the present experiment with 3AQ. At the smallest concentration of alcohol used, its local mole fraction around the probe is significantly lower than in the previous experiments with 5AQ. However, these apparent disadvantages are outweighed by the significant increase in fluorescence intensity and lifetime observed with increasing concentration of ethanol in the solvent mixture, as opposed to the drastic fluorescence quenching that occurs for 5AQ. This is a marked advantage in the use of 3AQ in studies like the present one. The local mole fraction of ethanol and preferential solvation index experienced by 3AQ are in line with those reported for 5AQ. The disadvantage of the smaller magnitude of Δμpersists in the time resolved fluorescence experiments, for solvent mixtures with very low ethanol content. Negligible wavelength dependence of fluorescence transients of 3AQ is observed forxp= 0.002,. However, this effect is outweighed at higher alcohol concentrations, for which nanosecond dynamics of preferential solvation is observed.
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Affiliation(s)
- Sharmistha Das
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
| | - Shirsendu Das
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
| | - Avinash Kumar Singh
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
| | - Anindya Datta
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai 400076, India
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2
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Szabadi A, Schröder C. Recent Developments in Polarizable Molecular Dynamics Simulations of Electrolyte Solutions. JOURNAL OF COMPUTATIONAL BIOPHYSICS AND CHEMISTRY 2022. [DOI: 10.1142/s2737416521420035] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
Polarizable molecular dynamics simulations are a fast progressing field in the scientific research of ionic liquids. The fundamentals of polarizable simulations, as well as their application to ionic liquids, were summarized in a review [Bedrov, D.; Piquemal, J.-P.; Borodin, O.; MacKerell, Jr., A. D.; Roux, B.; Schröder, C. Molecular Dynamics Simulations of Ionic Liquids and Electrolytes Using Polarizable Force Fields. Chem. Rev. 2019, 119, 7940–7995] in 2019. Since then, new methods to treat intermolecular interaction of induced dipoles in these highly charged systems were developed. This concerns the damping of these interactions and additional charge transfer as well as the prediction of ionic materials with ultrahigh refractive indices. In addition to the progress of the polarizable force fields, also thermostats and barostats for polarizable simulations evolved recently.
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Affiliation(s)
- András Szabadi
- University of Vienna, Faculty of Chemistry, Department of Computational Biological Chemistry, A-1090 Vienna, Austria
| | - Christian Schröder
- University of Vienna, Faculty of Chemistry, Department of Computational Biological Chemistry, A-1090 Vienna, Austria
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3
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Das S, Singha PK, Singh AK, Datta A. The Role of Hydrogen Bonding in the Preferential Solvation of 5-Aminoquinoline in Binary Solvent Mixtures. J Phys Chem B 2021; 125:12763-12773. [PMID: 34709811 DOI: 10.1021/acs.jpcb.1c06208] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
5-Aminoquinoline (5AQ) has been used as a fluorescent probe of preferential solvation (PS) in binary solvent mixtures in which the nonpolar component is diethyl ether and the polar component is protic (methanol) or aprotic (acetonitrile). Hence, the roles of solvent polarity and solute-solvent hydrogen bonding have been delineated. Positive deviations of spectral shifts from a linear dependence on the concentration of the polar component, signifying PS, are markedly more pronounced in case of the protic solvent. Solvation dynamics on a nanosecond time scale mark the formation of the solvation shell around the fluorescent probe. Time-resolved area-normalized emission spectra indicate the occurrence of the continuous solvation of the excited state when the polar component is acetonitrile. In contrast, two distinct states were observed when the polar component was methanol, the second state being the hydrogen bonded one. Translational diffusion is the rate-determining step for formation of the solvation shell. The time constant associated with it has been estimated from rise times observed in fluorescence transients monitored at the red end of the fluorescence spectra and also from the time evolution of the spectral width of time-resolved emission spectra.
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Affiliation(s)
- Sharmistha Das
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India
| | - Prajit Kumar Singha
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India
| | - Avinash Kumar Singh
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India
| | - Anindya Datta
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India
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Santoro F, Green JA, Martinez-Fernandez L, Cerezo J, Improta R. Quantum and semiclassical dynamical studies of nonadiabatic processes in solution: achievements and perspectives. Phys Chem Chem Phys 2021; 23:8181-8199. [PMID: 33875988 DOI: 10.1039/d0cp05907b] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
We concisely review the main methodological approaches to model nonadiabatic dynamics in isotropic solutions and their applications. Three general classes of models are identified as the most used to include solvent effects in the simulations. The first model describes the solvent as a set of harmonic collective modes coupled to the solute degrees of freedom, and the second as a continuum, while the third explicitly includes solvent molecules in the calculations. The issues related to the use of these models in semiclassical and quantum dynamical simulations are discussed, as well as the main limitations and perspectives of each approach.
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Affiliation(s)
- Fabrizio Santoro
- CNR-Consiglio Nazionale delle Ricerche, Istituto di Chimica dei Composti Organo Metallici (ICCOM-CNR), SS di Pisa, Area della Ricerca, via G. Moruzzi 1, I-56124 Pisa, Italy.
| | - James A Green
- CNR-Consiglio Nazionale delle Ricerche, Istituto di Biostrutture e Bioimmagini (IBB-CNR), via Mezzocannone 16, I-80136 Napoli, Italy.
| | - Lara Martinez-Fernandez
- Departamento de Química, Facultad de Ciencias and Institute for Advanced Research in Chemistry (IADCHEM), Universidad Autónoma de Madrid, Campus de Excelencia UAM-CSIC, 28049 Madrid, Spain
| | - Javier Cerezo
- Departamento de Química, Facultad de Ciencias and Institute for Advanced Research in Chemistry (IADCHEM), Universidad Autónoma de Madrid, Campus de Excelencia UAM-CSIC, 28049 Madrid, Spain
| | - Roberto Improta
- CNR-Consiglio Nazionale delle Ricerche, Istituto di Biostrutture e Bioimmagini (IBB-CNR), via Mezzocannone 16, I-80136 Napoli, Italy.
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Mohd Yusof Chan NN, Idris A, Zainal Abidin ZH, Tajuddin HA, Abdullah Z. White light employing luminescent engineered large (mega) Stokes shift molecules: a review. RSC Adv 2021; 11:13409-13445. [PMID: 35423891 PMCID: PMC8697633 DOI: 10.1039/d1ra00129a] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Revised: 05/14/2021] [Accepted: 03/03/2021] [Indexed: 12/14/2022] Open
Abstract
Large (mega) Stokes shift molecules have shown great potential in white light emission for optoelectronic applications, such as flat panel display technology, light-emitting diodes, photosensitizers, molecular probes, cellular and bioimaging, and other applications. This review aims to summarize recent developments of white light generation that incorporate a large Stokes shift component, key approaches to designing large Stokes shift molecules, perspectives on future opportunities, and remaining challenges confronting this emerging research field. After a brief introduction of feasible pathways in generating white light, exemplifications of large Stokes shift molecules as white light candidates from organic and inorganic-based materials are illustrated. Various possible ways to design such molecules have been revealed by integrating the photophysical mechanisms that are essential to produce red-shifted emission upon photoexcitation, such as excited state intramolecular proton transfer (ESIPT), intramolecular charge transfer (ICT), excited state geometrical relaxation or structural deformation, aggregation-induced emission (AIE) alongside the different formations of aggregates, interplay between monomer and excimer emission, host-guest interaction, and lastly metal to ligand charge transfer (MLCT) via harvesting triplet state. Furthermore, previously reported fluorescent materials are described and categorized based on luminescence behaviors on account of the Stokes shifts value. This review will serve as a rationalized introduction and reference for researchers who are interested in exploring large or mega Stokes shift molecules, and will motivate new strategies along with instigation of persistent efforts in this prominent subject area with great avenues.
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Affiliation(s)
- Nadia Nabihah Mohd Yusof Chan
- Department of Chemistry, Faculty of Science, University of Malaya 50603 Kuala Lumpur Malaysia
- Centre for Ionics University of Malaya, Department of Physics, Faculty of Science, University of Malaya 50603 Kuala Lumpur Malaysia
| | - Azila Idris
- Department of Chemistry, Faculty of Science, University of Malaya 50603 Kuala Lumpur Malaysia
| | - Zul Hazrin Zainal Abidin
- Centre for Ionics University of Malaya, Department of Physics, Faculty of Science, University of Malaya 50603 Kuala Lumpur Malaysia
| | - Hairul Anuar Tajuddin
- Department of Chemistry, Faculty of Science, University of Malaya 50603 Kuala Lumpur Malaysia
| | - Zanariah Abdullah
- Department of Chemistry, Faculty of Science, University of Malaya 50603 Kuala Lumpur Malaysia
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Rey R, Hynes JT. Solvation Dynamics in Water. 4. On the Initial Regime of Solvation Relaxation. J Phys Chem B 2020; 124:7668-7681. [PMID: 32790403 DOI: 10.1021/acs.jpcb.0c05706] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
It is shown, by means of numerical and analytic work, that initial molecular momenta play little significant role in the initial fast solvation relaxation that follows electronic excitation of, and charge creation for, a standard model system of a solute in water. Instead, the nonequilibrium dynamics are predominantly described by noninertial "steering" by the torques directly generated by the newly created charge distribution. It is this process that largely overcomes inertia and drives the relaxation dynamics on a time scale of a few tens of femtoseconds in the key initial regime of the dynamics. These results are discussed in the context of commonly employed descriptions such as inertial, Gaussian, and underdamped dynamical behavior.
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Affiliation(s)
- Rossend Rey
- Departament de Fı́sica, Universitat Politècnica de Catalunya, Campus Nord B4-B5, Barcelona 08034, Spain
| | - James T Hynes
- PASTEUR, Department of Chemistry, École Normale Supérieure, PSL University, Sorbonne Université, CNRS, 75005 Paris, France.,Department of Chemistry, University of Colorado, Boulder, Colorado 80309, United States
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Zeindlhofer V, Hudson P, Pálvölgyi ÁM, Welsch M, Almarashi M, Woodcock HL, Brooks B, Bica-Schröder K, Schröder C. Enantiomerization of Axially Chiral Biphenyls: Polarizable MD Simulations in Water and Butylmethylether. Int J Mol Sci 2020; 21:E6222. [PMID: 32872113 PMCID: PMC7503397 DOI: 10.3390/ijms21176222] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2020] [Revised: 08/20/2020] [Accepted: 08/25/2020] [Indexed: 01/14/2023] Open
Abstract
In this study, we investigate the influence of chiral and achiral cations on the enantiomerization of biphenylic anions in n-butylmethylether and water. In addition to the impact of the cations and solvent molecules on the free energy profile of rotation, we also explore if chirality transfer between a chiral cation and the biphenylic anion is possible, i.e., if pairing with a chiral cation can energetically favour one conformer of the anion via diastereomeric complex formation. The quantum-mechanical calculations are accompanied by polarizable MD simulations using umbrella sampling to study the impact of solvents of different polarity in more detail. We also discuss how accurate polarizable force fields for biphenylic anions can be constructed from quantum-mechanical reference data.
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Affiliation(s)
- Veronika Zeindlhofer
- Department of Computational Biological Chemistry, University of Vienna, Währingerstraße 17, 1090 Vienna, Austria; (V.Z.); (M.W.); (M.A.)
| | - Phillip Hudson
- Laboratory of Computational Biology, National Heart, Lung, and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD 20892, USA; (P.H.); (B.B.)
- Department of Chemistry, University of South Florida, Tampa, FL 33620, USA;
| | - Ádám Márk Pálvölgyi
- Institute of Applied Synthetic Chemistry, TU Wien, Getreidemarkt 9/163, 1060 Vienna, Austria; (Á.M.P.); (K.B.-S.)
| | - Matthias Welsch
- Department of Computational Biological Chemistry, University of Vienna, Währingerstraße 17, 1090 Vienna, Austria; (V.Z.); (M.W.); (M.A.)
| | - Mazin Almarashi
- Department of Computational Biological Chemistry, University of Vienna, Währingerstraße 17, 1090 Vienna, Austria; (V.Z.); (M.W.); (M.A.)
| | - H. Lee Woodcock
- Department of Chemistry, University of South Florida, Tampa, FL 33620, USA;
| | - Bernard Brooks
- Laboratory of Computational Biology, National Heart, Lung, and Blood Institute (NHLBI), National Institutes of Health (NIH), Bethesda, MD 20892, USA; (P.H.); (B.B.)
| | - Katharina Bica-Schröder
- Institute of Applied Synthetic Chemistry, TU Wien, Getreidemarkt 9/163, 1060 Vienna, Austria; (Á.M.P.); (K.B.-S.)
| | - Christian Schröder
- Department of Computational Biological Chemistry, University of Vienna, Währingerstraße 17, 1090 Vienna, Austria; (V.Z.); (M.W.); (M.A.)
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Heid E, Boresch S, Schröder C. Polarizable molecular dynamics simulations of ionic liquids: Influence of temperature control. J Chem Phys 2020; 152:094105. [PMID: 33480729 PMCID: PMC7610910 DOI: 10.1063/1.5143746] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
Ionic liquids are an interesting class of soft matter with viscosities of one or two orders of magnitude higher than that of water. Unfortunately, classical, non-polarizable molecular dynamics (MD) simulations of ionic liquids result in too slow dynamics and demonstrate the need for explicit inclusion of polarizability. The inclusion of polarizability, here via the Drude oscillator model, requires amendments to the employed thermostat, where we consider a dual Nosé-Hoover thermostat, as well as a dual Langevin thermostat. We investigate the effects of the choice of a thermostat and the underlying parameters such as the masses and force constants of the Drude particles on static and dynamic properties of ionic liquids. Here, we show that Langevin thermostats are not suitable for investigating the dynamics of ionic liquids. Since polarizable MD simulations are associated with high computational costs, we employed a self-developed graphics processing unit enhanced code within the MD program CHARMM to keep the overall computational effort reasonable.
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Affiliation(s)
- Esther Heid
- University of Vienna, Faculty of Chemistry, Department of Computational Biological Chemistry, Währingerstr. 17, A-1090 Vienna, Austria
| | - Stefan Boresch
- University of Vienna, Faculty of Chemistry, Department of Computational Biological Chemistry, Währingerstr. 17, A-1090 Vienna, Austria
| | - Christian Schröder
- University of Vienna, Faculty of Chemistry, Department of Computational Biological Chemistry, Währingerstr. 17, A-1090 Vienna, Austria
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Popov AV, Hernandez R. Solvation Dynamics in the Cybotactic Region of Gas-Expanded Liquids: A Decade Later. Ind Eng Chem Res 2020. [DOI: 10.1021/acs.iecr.9b03682] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Alexander V. Popov
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Rigoberto Hernandez
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218, United States
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Das S, Singh AK, Biswas DS, Datta A. Dynamics of Preferential Solvation of 5-Aminoquinoline in Hexane–Alcohol Solvent Mixtures. J Phys Chem B 2019; 123:10267-10274. [DOI: 10.1021/acs.jpcb.9b09143] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Sharmistha Das
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India
| | - Avinash Kumar Singh
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India
| | - Deep Sekhar Biswas
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India
| | - Anindya Datta
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India
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