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Jara-Toro RA, Taccone MI, Dezalay J, Noble JA, von Helden G, Pino GA. Observation of a core-excited dipole-bound state ∼1 eV above the electron detachment threshold in cryogenically cooled acetylacetonate. J Chem Phys 2024; 161:084305. [PMID: 39206831 DOI: 10.1063/5.0223957] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2024] [Accepted: 08/15/2024] [Indexed: 09/04/2024] Open
Abstract
Dipole-bound states in anions exist when a polar neutral core binds an electron in a diffuse orbital through charge-dipole interaction. Electronically excited polar neutral cores can also bind an electron in a diffuse orbital to form Core-Excited Dipole-Bound States (CE-DBSs), which are difficult to observe because they usually lie above the electron detachment threshold, leading to very short lifetimes and, thus, unstructured transitions. We report here the photodetachment spectroscopy of cryogenically cooled acetylacetonate anion (C5H7O2-) recorded by detecting the neutral radical produced upon photodetachment and the infrared spectroscopy in He-nanodroplets. Two DBSs were identified in this anion. One of them lies close to the electron detachment threshold (∼2.74 eV) and is associated with the ground state of the radical (D0-DBS). Surprisingly, the other DBS appears as resonant transitions at 3.69 eV and is assigned to the CE-DBS associated with the first excited state of the radical (D1-DBS). It is proposed that the resonant transitions of the D1-DBS are observed ∼1 eV above the detachment threshold because its lifetime is determined by the internal conversion to the D0-DBS, after which the fast electron detachment takes place.
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Affiliation(s)
- Rafael A Jara-Toro
- INFIQC: Instituto de Investigaciones en Fisicoquímica de Córdoba (CONICET - UNC) - Haya de la Torre y Medina Allende, Ciudad Universitaria, X5000HUA Córdoba, Argentina
- Departamento de Fisicoquímica, Facultad de Ciencias Químicas - Universidad Nacional de Córdoba - Haya de la Torre y Medina Allende, Ciudad Universitaria, X5000HUA Córdoba, Argentina
- Centro Láser de Ciencias Moleculares - Universidad Nacional de Córdoba - Haya de la Torre s/n, Pabellón Argentina, Ciudad Universitaria, X5000HUA Córdoba, Argentina
| | - Martín I Taccone
- Fritz Haber Institute of the Max Planck Society, 14195 Berlin, Germany
| | - Jordan Dezalay
- Physique des Interactions Ioniques et Moléculaires (PIIM): CNRS / Aix-Marseille Université UMR 7345, Avenue Escadrille Normandie-Niémen, 13013 Marseille, France
| | - Jennifer A Noble
- Physique des Interactions Ioniques et Moléculaires (PIIM): CNRS / Aix-Marseille Université UMR 7345, Avenue Escadrille Normandie-Niémen, 13013 Marseille, France
| | - Gert von Helden
- Fritz Haber Institute of the Max Planck Society, 14195 Berlin, Germany
| | - Gustavo A Pino
- INFIQC: Instituto de Investigaciones en Fisicoquímica de Córdoba (CONICET - UNC) - Haya de la Torre y Medina Allende, Ciudad Universitaria, X5000HUA Córdoba, Argentina
- Departamento de Fisicoquímica, Facultad de Ciencias Químicas - Universidad Nacional de Córdoba - Haya de la Torre y Medina Allende, Ciudad Universitaria, X5000HUA Córdoba, Argentina
- Centro Láser de Ciencias Moleculares - Universidad Nacional de Córdoba - Haya de la Torre s/n, Pabellón Argentina, Ciudad Universitaria, X5000HUA Córdoba, Argentina
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Gibbard JA, Kellow CS, Verlet JRR. Photoelectron spectroscopy of the deprotonated tryptophan anion: the contribution of deprotomers to its photodetachment channels. Phys Chem Chem Phys 2024; 26:12053-12059. [PMID: 38578256 DOI: 10.1039/d4cp00309h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/06/2024]
Abstract
Photoelectron spectroscopy and electronic structure calculations are used to investigate the electronic structure of the deprotonated anionic form of the aromatic amino acid tryptophan, and its chromophore, indole. The photoelectron spectra of tryptophan, recorded at different wavelengths across the UV, consist of two direct detachment channels and thermionic emission, whereas the hν = 4.66 eV spectrum of indole consists of two direct detachment features. Electronic structure calculations indicate that two deprotomers of tryptophan are present in the ion beam; deprotonation of the carboxylic acid group (Trp(I)-) or the N atom on the indole ring (Trp(II)-). Strong similarities are observed between the direct detachment channels in the photoelectron spectra of tryptophan and indole, which in conjunction with electronic structure calculations, indicate that electron loss from Trp(II)- dominates this portion of the spectra. However, there is some evidence that direct detachment of Trp(I)- is also observed. Thermionic emission is determined to predominantly arise from the decarboxylation of Trp(I)-, mediated by the ππ* excited state near λ = 300 nm, which results in an anionic fragment with a negative electron affinity that readily autodetaches.
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Affiliation(s)
- Jemma A Gibbard
- Department of Chemistry, Durham University, Durham, DH1 3LE, UK.
| | | | - Jan R R Verlet
- Department of Chemistry, Durham University, Durham, DH1 3LE, UK.
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 3, 18223 Prague 8, Czech Republic
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Molina FL, Jara-Toro RA, Noble JA, Dedonder-Lardeux C, Jouvet C, Pino GA. Photodetachment of Deprotonated R-Mandelic Acid: The Role of Proton Delocalization on the Radical Stability. Chemphyschem 2023; 24:e202200324. [PMID: 36000956 DOI: 10.1002/cphc.202200324] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2022] [Revised: 08/23/2022] [Indexed: 01/05/2023]
Abstract
The photodetachment and stability of R-Mandelate, the deprotonated form of the R-Mandelic acid, was investigated by observing the neutral species issued from either simple photodetachment or dissociative photodetachment in a cold anions set-up. R-Mandalate has the possibility to form an intramolecular ionic hydrogen-bond between adjacent hydroxyl and carboxylate groups. The potential energy surface along the proton transfer (PT) coordinate between both groups (O- …H+ …- OCO) features a single local minima, with the proton localized on the O- group (OH…- OCO). However, the structure with the proton localized on the - OCO group (O- …HOCO) is also observed because it falls within the extremity of the vibrational wavefunction of the OH…- OCO isomer along the PT coordinate. The stability of the corresponding radicals, produced upon photodetachment, is strongly dependent on the position of the proton in the anion: the radicals produced from the OH…- OCO isomer decarboxylate without barrier, while the radicals produced from the O- …HOCO isomer are stable.
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Affiliation(s)
- Franco L Molina
- INFIQC: Instituto de Investigaciones en Fisicoquímica de Córdoba (CONICET - UNC) -, Haya de la Torre s/n, Ciudad Universitaria, X5000HUA, Córdoba, Argentina.,Departamento de Fisicoquímica, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba -, Haya de la Torre y Medina Allende, Ciudad Universitaria, X5000HUA, Córdoba, Argentina.,Centro Láser de Ciencias Moleculares -, Universidad Nacional de Córdoba, Haya de la Torre s/n, Pabellón Argentina, Ciudad Universitaria, X5000HUA, Córdoba, Argentina
| | - Rafael A Jara-Toro
- INFIQC: Instituto de Investigaciones en Fisicoquímica de Córdoba (CONICET - UNC) -, Haya de la Torre s/n, Ciudad Universitaria, X5000HUA, Córdoba, Argentina.,Departamento de Fisicoquímica, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba -, Haya de la Torre y Medina Allende, Ciudad Universitaria, X5000HUA, Córdoba, Argentina.,Centro Láser de Ciencias Moleculares -, Universidad Nacional de Córdoba, Haya de la Torre s/n, Pabellón Argentina, Ciudad Universitaria, X5000HUA, Córdoba, Argentina
| | - Jennifer A Noble
- Physique des Interactions Ioniques et Moléculaires (PIIM), CNRS, Aix-Marseille Université, 13397, Marseille, France
| | - Claude Dedonder-Lardeux
- Physique des Interactions Ioniques et Moléculaires (PIIM), CNRS, Aix-Marseille Université, 13397, Marseille, France
| | - Christophe Jouvet
- Physique des Interactions Ioniques et Moléculaires (PIIM), CNRS, Aix-Marseille Université, 13397, Marseille, France
| | - Gustavo A Pino
- INFIQC: Instituto de Investigaciones en Fisicoquímica de Córdoba (CONICET - UNC) -, Haya de la Torre s/n, Ciudad Universitaria, X5000HUA, Córdoba, Argentina.,Departamento de Fisicoquímica, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba -, Haya de la Torre y Medina Allende, Ciudad Universitaria, X5000HUA, Córdoba, Argentina.,Centro Láser de Ciencias Moleculares -, Universidad Nacional de Córdoba, Haya de la Torre s/n, Pabellón Argentina, Ciudad Universitaria, X5000HUA, Córdoba, Argentina
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Bin Mohd Yusof MS, Debnath T, Loh ZH. Observation of intra- and intermolecular vibrational coherences of the aqueous tryptophan radical induced by photodetachment. J Chem Phys 2021; 155:134306. [PMID: 34624987 DOI: 10.1063/5.0067335] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
Abstract
The study of the photodetachment of amino acids in aqueous solution is pertinent to the understanding of elementary processes that follow the interaction of ionizing radiation with biological matter. In the case of tryptophan, the tryptophan radical that is produced by electron ejection also plays an important role in numerous redox reactions in biology, although studies of its ultrafast molecular dynamics are limited. Here, we employ femtosecond optical pump-probe spectroscopy to elucidate the ultrafast structural rearrangement dynamics that accompany the photodetachment of the aqueous tryptophan anion by intense, ∼5-fs laser pulses. The observed vibrational wave packet dynamics, in conjunction with density functional theory calculations, identify the vibrational modes of the tryptophan radical, which participate in structural rearrangement upon photodetachment. Aside from intramolecular vibrational modes, our results also point to the involvement of intermolecular modes that drive solvent reorganization about the N-H moiety of the indole sidechain. Our study offers new insight into the ultrafast molecular dynamics of ionized biomolecules and suggests that the present experimental approach can be extended to investigate the photoionization- or photodetachment-induced structural dynamics of larger biomolecules.
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Affiliation(s)
- Muhammad Shafiq Bin Mohd Yusof
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore
| | - Tushar Debnath
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore
| | - Zhi-Heng Loh
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore
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Marceca E, Noble JA, Dedonder-Lardeux C, Jouvet C. Loss of CO 2 from Monodeprotonated Phthalic Acid upon Photodissociation and Dissociative Electron Detachment. J Phys Chem A 2021; 125:7406-7413. [PMID: 34415759 DOI: 10.1021/acs.jpca.1c04854] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The decarboxylation (CO2 loss) mechanism of cold monodeprotonated phthalic acid was studied in a photodissociation action spectrometer by quantifying mass-selected product anions and neutral particles as a function of the excitation energy. The analysis proceeded by interpreting the translational energy distribution of the generated uncharged products, and with the help of quantum calculations. In particular, this study reveals different fragmentation pathways in the deprotonated anion and in the radical generated upon electron photodetachment. Unlike the behavior found in other deprotonated aryl carboxylic acids, which do not fragment in the anion excited state, a double loss of CO2 molecules takes place in the phthalic monoanion. Moreover, at higher excitation energies the phthalic monoanion experiences decarboxylative photodetachment with a statistical distribution of product translational energies, which contrasts with the impulsive dissociation reactions characteristic of other aryl carboxylic anions.
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Affiliation(s)
- Ernesto Marceca
- INQUIMAE (CONICET-Universidad de Buenos Aires), DQIAQF (Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria), 3er piso, Pab. II, 1428 Buenos Aires, Argentina
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Bin Mohd Yusof MS, Lim YL, Loh ZH. Ultrafast vibrational wave packet dynamics of the aqueous tyrosyl radical anion induced by photodetachment. Phys Chem Chem Phys 2021; 23:18525-18534. [PMID: 34581329 DOI: 10.1039/d1cp02975d] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The ultrafast dynamics triggered by the photodetachment of the tyrosinate dianion in aqueous environment shed light on the elementary processes that accompany the interaction of ionizing radiation with biological matter. Photodetachment of the tryosinate dianion yields the tyrosyl radical anion, an important intermediate in biological redox reactions, although the study of its ultrafast dynamics is limited. Here, we utilize femtosecond optical pump-probe spectroscopy to investigate the ultrafast structural reorganization dynamics that follow the photodetachment of the tyrosinate dianion in aqueous solution. Photodetachment of the tyrosinate dianion leads to vibrational wave packet motion along seven vibrational modes that are coupled to the photodetachment process. The vibrational modes are assigned with the aid of density functional theory (DFT) calculations. Our results offer a glimpse of the elementary dynamics of ionized biomolecules and suggest the possibility of extending this approach to investigate the ionization-induced structural rearrangement of other aromatic amino acids and larger biomolecules.
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Affiliation(s)
- Muhammad Shafiq Bin Mohd Yusof
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore.
| | - Yong Liang Lim
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore.
| | - Zhi-Heng Loh
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore.
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Zhang Y, Zhang R, Li SL, Mostofa KMG, Fu X, Ji H, Liu W, Sun P. Photo-ammonification of low molecular weight dissolved organic nitrogen by direct and indirect photolysis. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 764:142930. [PMID: 33131884 DOI: 10.1016/j.scitotenv.2020.142930] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Revised: 09/26/2020] [Accepted: 10/05/2020] [Indexed: 06/11/2023]
Abstract
The photo-ammonification process plays a crucial role in the transformation of dissolved organic nitrogen (DON) to dissolved inorganic nitrogen (DIN). However, previous studies have primarily focused on DON biotransformation than on abiotic processes. This study investigated the photo-ammonification process of nine model low molecular weight (LMW) DON molecules (e.g., amino acids, nucleotides, and urea) under the influence of different light sources. The results showed that photo-ammonification of model DON was mainly induced by UV light, while negligible contribution by visible light was found. Depending on their molecular structures, amino acids yielded different ammonia amounts, whereas negligible photo-ammonification was observed for nucleotides and urea. As for the reactive species, OH promoted ammonia yields of all the model amino acids; 3CDOM⁎ contributed to the photo-ammonification of six amino acids; 1O2 only had a positive impact on ammonification of tryptophan, histidine, and tyrosine; and CO3- accelerated ammonia generation from histidine and methionine. In natural water samples, tryptophan, tyrosine, histidine, and methionine generated significant ammonia. OH and 1O2 were speculated as the contributing reactive species based on kinetic studies as well as significant fluorescent humic-like and tyrosine-like substances degradation in irradiated samples compared to the raw samples characterized by the EEM-PARAFAC analysis. The negative linear correlations between photo-ammonification rates and the ELUMO-EHOMO of the amino acids emphasized the importance of the role of the molecular structure. Overall, these results revealed the LMW DON photo-ammonification mechanism in sunlit surface waters and highlighted its significance in the nitrogen biogeochemical cycle as well as water quality management.
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Affiliation(s)
- Yutong Zhang
- Institute of Surface-Earth System Science, School of Earth System Science, Tianjin University, Tianjin, China
| | - Ruochun Zhang
- Institute of Surface-Earth System Science, School of Earth System Science, Tianjin University, Tianjin, China; Tianjin Key Laboratory of Earth Critical Zone Science and Sustainable Development in Bohai Rim, Tianjin University, Tianjin 300072, China.
| | - Si-Liang Li
- Institute of Surface-Earth System Science, School of Earth System Science, Tianjin University, Tianjin, China; Tianjin Key Laboratory of Earth Critical Zone Science and Sustainable Development in Bohai Rim, Tianjin University, Tianjin 300072, China
| | - Khan M G Mostofa
- Institute of Surface-Earth System Science, School of Earth System Science, Tianjin University, Tianjin, China; Tianjin Key Laboratory of Earth Critical Zone Science and Sustainable Development in Bohai Rim, Tianjin University, Tianjin 300072, China
| | - Xiaoli Fu
- Institute of Surface-Earth System Science, School of Earth System Science, Tianjin University, Tianjin, China
| | - Haodong Ji
- The Key Laboratory of Water and Sediment Science, Ministry of Education, China; College of Environment Science and Engineering, Peking University, Beijing 100871, China
| | - Wen Liu
- The Key Laboratory of Water and Sediment Science, Ministry of Education, China; College of Environment Science and Engineering, Peking University, Beijing 100871, China
| | - Peizhe Sun
- School of Environmental Science and Engineering, Tianjin University, Tianjin 300072, China
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Noble JA, Marceca E, Dedonder C, Jouvet C. Influence of the N atom and its position on electron photodetachment of deprotonated indole and azaindole. Phys Chem Chem Phys 2020; 22:27290-27299. [DOI: 10.1039/d0cp03609a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Dipole bound state and its vibrational structure observed in deprotonated 7-azaindole by recording the signal of 7-azaindolyl stable neutral radical.
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Affiliation(s)
- Jennifer A. Noble
- CNRS
- Aix Marseille Univ
- PIIM
- Physique des Interactions Ioniques et Moléculaires
- UMR 7345
| | - Ernesto Marceca
- INQUIMAE (CONICET – Universidad de Buenos Aires)
- DQIAQF (Facultad de Ciencias Exactas y Naturales
- Universidad de Buenos Aires)
- Ciudad Universitaria
- 1428 Buenos Aires
| | - Claude Dedonder
- CNRS
- Aix Marseille Univ
- PIIM
- Physique des Interactions Ioniques et Moléculaires
- UMR 7345
| | - Christophe Jouvet
- CNRS
- Aix Marseille Univ
- PIIM
- Physique des Interactions Ioniques et Moléculaires
- UMR 7345
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