Vibrational heavy atom effect on relaxation and solvent shell dynamics in group VIII trimetallic carbonyls

Infrared pump-probe and two-dimensional infrared (2D-IR) spectroscopies were used to study the vibrational dynamics of a homologous set of trimetallic dodecacarbonyls with increasingly heavy atomic masses in tetrahydrofuran solution. The vibrational lifetimes showed some evidence of the vibrational heavy atom effect (VHAE) but were not consistent across the sample set. Spectral diffusion was measured by 2D-IR spectroscopy to investigate whether the changes produced by the VHAE had influenced other aspects of vibrational dynamics. The triiron species was found to be more dynamic on very fast timescales and may exhibit evidence of a transient bridging CO structure. Centerline slope analysis of the high-frequency CO peak for each complex revealed that the vibrational dynamics were subtly but consistently slowed for the compounds with heavier metal atoms.

The Surface of Colloidal Metal-Organic Framework Nanoparticles Revealed by Vibrational Sum Frequency Scattering Spectroscopy

Solvation shells strongly influence the interfacial chemistry of colloidal systems, from the activity of proteins to the colloidal stability and catalysis of nanoparticles. Despite their fundamental and practical importance, solvation shells have remained largely undetected by spectroscopy. Furthermore, their ability to assemble at complex but realistic interfaces with heterogeneous and rough surfaces remains an open question. Here, we apply vibrational sum frequency scattering spectroscopy (VSFSS), an interface-specific technique, to colloidal nanocrystals with porous metal-organic frameworks (MOFs) as a case study. Due to the porous nature of the solvent-particle boundary, MOF particles challenge conventional models of colloidal and interfacial chemistry. Their multiweek colloidal stability in the absence of conventional surface ligands suggests that stability may arise in part from solvation forces. Spectra of colloidally stable Zn(2-methylimidazolate)2 (ZIF-8) in polar solvents indicate the presence of ordered solvation shells, solvent-metal binding, and spontaneous ordering of organic bridging linkers within the MOF. These findings help explain the unexpected colloidal stability of MOF colloids, while providing a roadmap for applying VSFSS to wide-ranging colloidal nanocrystals in general.

Insight into the Structural and Emissive Behavior of a Three-Dimensional Americium(III) Formate Coordination Polymer

We report the structural, vibrational, and optical properties of americium formate (Am(CHO2 )3 ) crystals synthesized via the in situ hydrolysis of dimethylformamide (DMF). The coordination polymer features Am3+ ions linked by formate ligands into a three-dimensional network that is isomorphous to several lanthanide analogs, (e. g., Eu3+ , Nd3+ , Tb3+ ). Structure determination revealed a nine-coordinate Am3+ metal center that features a unique local C3v symmetry. The metal-ligand bonding interactions were investigated by vibrational spectroscopy, natural localized molecular orbital calculations, and the quantum theory of atoms in molecules. The results paint a predominantly ionic bond picture and suggest the metal-oxygen bonds increase in strength from Nd-O Collapse

Key Words

• americium
• coordination polymers
• metal-organic frameworks
• photoluminescence
• transuranic

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MESH Headings Collapse

Grants

• S10 OD024973 NIH HHS
• 2018/07308-4 Fundação de Amparo à Pesquisa do Estado de São Paulo
• 306844/2020-6 CnPq
• FWP 73200, DE-SC0001136 Basic Energy Sciences

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Affiliation(s)

Aaron D Nicholas Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, WA, 99354, USA
Ana Arteaga Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, WA, 99354, USA
Lucas C Ducati Department of Fundamental Chemistry Institute of Chemistry, University of São Paulo, Av. Prof. Lineu Prestes 748, São Paulo, 05508-000, Brazil
Edgar C Buck Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, WA, 99354, USA
Jochen Autschbach Department of Chemistry, University at Buffalo State University of New York, Buffalo, NY, 14260-3000, USA
Robert G Surbella Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, WA, 99354, USA

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Overlooked Effects of La-4f Orbitals in Endohedral Metallofullerenes

For endohedral metallofullerenes (EMFs), a central issue is how to correctly describe the intracluster and metal-cage interactions, which are critical for understanding their structures, stabilities, and various properties. In this work, density functional theory calculations were carried out for 13 La-based EMFs covering all four reported types and a rather wide cage size range (C₃₂-C₁₀₄). The results reveal that the usually core-like lanthanide 4f subshell may play a critical role in the structural characteristics, energetic stabilities, frontier orbital energy levels, metal charges, and chemical reactivities of these endofullerenes. Regardless of the encapsulated forms, the La-4f contributions to the chemical bonding and structural stability increase with the reduced cage sizes because of the gradually enhanced cage confinement. The combination of metal-to-nonmetal charge transfer and compression of the cage cavity exposes and effectively activates the otherwise chemically inert 4f orbitals. By disclosing the important role of long-neglected metal orbitals inside fullerenes, the current work not only deepens our understanding of EMFs, but also provides new insights into the chemical bondings in general confined spaces at the subnanometer scale.

Assessing the donor ability of boratabenzene and 9-borataphenanthrene anions through metal complexes with carbonyl ligands

A series of anionic group 6 tricarbonyl and neutral rhodium dicarbonyl complexes featuring substituted boratabenzene and borataphenanthrene ligands are prepared and the donor strengths of the boracyclic ligands are assessed.

Gold Nanoparticles Augment N-Terminal Cleavage and Splicing Reactions in Mycobacterium tuberculosis SufB

Protein splicing is a self-catalyzed event where the intervening sequence intein cleaves off, joining the flanking exteins together to generate a functional protein. Attempts have been made to regulate the splicing rate through variations in temperature, pH, and metals. Although metal-regulated protein splicing has been more captivating to researchers, metals were shown to only inhibit splicing reactions that confine their application. This is the first study to show the effect of nanoparticles (NPs) on protein splicing. We found that gold nanoparticles (AuNPs) of various sizes can increase the splicing efficiency by more than 50% and the N-terminal cleavage efficiency by more than 45% in Mycobacterium tuberculosis SufB precursor protein. This study provides an effective strategy for engineering splicing-enhanced intein platforms. UV-vis absorption spectroscopy, isothermal titration calorimetry (ITC), and transmission electron microscopy (TEM) confirmed AuNP interaction with the native protein. Quantum mechanics/molecular mechanics (QM/MM) analysis suggested a significant reduction in the energy barrier at the N-terminal cleavage site in the presence of gold atom, strengthening our experimental evidence on heightened the N-terminal cleavage reaction. The encouraging observation of enhanced N-terminal cleavage and splicing reaction can have potential implementations from developing a rapid drug delivery system to designing a contemporary protein purification system.

Expanding the Concepts Trans Influence and Back-Donation: Hybrid and Side Donations in [Cp*MIII(L)XY] (M = Rh, Ir) Complexes with CO, CN-, and CNR Ligands. A Window to Cis Influence

Analysis of the bonding contributions in molecules [M^IIICp*(L)XY] (M = Rh, Ir; Cp* = C₅Me₅; L = CO, CN^-, CNR) has uncovered a rich variety of types of interaction that seem to have escaped detection so far, in spite of the continuous popularity of cyclopentadienyl transition-metal complexes since the 1970s. At variance with the M-C≡O bond in square-planar systems, which shows typical metal-to-CO π-back-donation, the nonorthogonal arrangement of the Cp* plane and Rh-C≡O fragment and the pseudooctahedral geometry lead to the observation of many direct lateral donations from other ligands that do not involve the metal orbitals, and we name side donations, for instance, Cp* → π*(CO), Cl → π*(CO), and F → π*(CO). Hybrid donations partially involving the metal, M-C_aryl → π*(CO), are also observed. The summation of multiple contributions other than back-donation can easily account for about 20% of the electron donation to the π*(C≡O) orbitals.

New horizons in low oxidation state group 2 metal chemistry

Since the seminal report on Mg in the +I oxidation state in 2007, low-valent complexes featuring a Mg^I-Mg^I bond developed from trophy molecules to state-of-the-art reducing agents. Despite increasing interest in low-valency of the other group 2 metals, this area was restricted for a long time to a rare example of a Ca^I(arene)Ca^I inverse sandwich. This feature article focuses on the most recent developments in the field, highlighting recent breakthroughs for Be, Mg and Ca. The more exotic metal Be was the first to be isolated as a zero-valent complex which could be oxidized to a Be^I species. There also has been interest in breaking the Mg^I-Mg^I bond with superbulky β-diketiminate ligands (BDI) that suppress (BDI)Mg-Mg(BDI) bond formation. This led to Mg-Mg bond elongation or Mg-N bond cleavage. Several reports on attempts to isolate (BDI)Mg˙ radicals by combinations of ligand bulk, addition of neutral ligands or UV(vis) irradiation led to reduction of the aromatic solvents, underscoring the high reactivity of these open shell species. Only recently, zero-valent complexes of Mg were introduced. Double reduction of a (BDI)MgI complex with Na gave [(BDI)Mg^-]Na⁺. This Mg⁰ complex crystallized as a dimer in which the Na⁺ cations bridge the two (BDI)Mg^- anions which react as Mg nucleophiles. Thermal decomposition led to spontaneous formation of Na⁰ and a trinuclear (BDI)MgMgMg(BDI) complex. This mixed-valence Mg₃-complex is a prime example of the fleeting multinuclear Mg_n intermediates discussed on the way from Mg metal to Grignard reagent. Attempts to prepare low-valent Ca^I compounds by reduction of (BDI)CaI led to dearomatization of the arene solvents: (BDI)Ca(arene)Ca(BDI). Reduction in alkanes prevented this decomposition pathway but led to N₂ reduction and isolation of (BDI)Ca(N₂)Ca(BDI), representing the first example of molecular nitrogen fixation with an early main group metal. As the N₂^2- anion reacts in most cases as a very strong two-electron reductant, LCa(N₂)CaL could be seen as a synthon for hitherto elusive Ca^I-Ca^I complexes. Theoretical calculations suggest that participation of Ca d-orbitals is relevant for N₂ activation. These most recent developments in low-valent group 2 metal chemistry will revive this area and undoubtly lead to new reactivities and applications.

Density-Based Descriptors of Redox Reactions Involving Transition Metal Compounds as a Reality-Anchored Framework: A Perspective

Description of redox reactions is critically important for understanding and rational design of materials for electrochemical technologies, including metal-ion batteries, catalytic surfaces, or redox-flow cells. Most of these technologies utilize redox-active transition metal compounds due to their rich chemistry and their beneficial physical and chemical properties for these types of applications. A century since its introduction, the concept of formal oxidation states (FOS) is still widely used for rationalization of the mechanisms of redox reactions, but there exists a well-documented discrepancy between FOS and the electron density-derived charge states of transition metal ions in their bulk and molecular compounds. We summarize our findings and those of others which suggest that density-driven descriptors are, in certain cases, better suited to characterize the mechanism of redox reactions, especially when anion redox is involved, which is the blind spot of the FOS ansatz.

Transition-Metal Chemistry of the Heavier Alkaline Earth Atoms Ca, Sr, and Ba

ConspectusAlkaline earth elements beryllium, magnesium, calcium, strontium, and barium with an ns² valence-shell configuration are usually classified as main-group elements that belong to the s-block atoms. For a long time, the elements were considered to be rather chemically uninteresting atomic species due to preconceived ideas about bonding, structure, and reactivity. They typically use the two ns valence electrons in forming ionic salt compounds with the metal in a formal oxidation state of +2. For the heavier alkaline earth atoms, calcium, strontium, and barium, their (n - 1)d atomic orbitals (AOs) are empty but lie close in energy to the valence np orbitals. Earlier theoretical investigations have already suggested that these elements can employ the (n - 1)d AOs to some extent to form polar bonds in divalent species in which the alkaline earth metal centers are sufficiently positively charged. The d orbital involvement increases from Ca to Sr and markedly in Ba. Thus, barium has been termed an honorary transition metal.Recently, molecular complexes of Ca, Sr, and Ba were prepared in the gas phase and in a low-temperature solid neon matrix and were detected by infrared spectroscopy. An analysis of the electronic structures of [Ba(CO)]⁺, [Ba(CO)]^-, saturated coordinated octacarbonyls [M(CO)₈] and [M(CO)₈]⁺, isoelectronic dinitrogen complexes [M(N₂)₈] and [M(N₂)₈]⁺, and the tribenzene complexes [M(Bz)₃] (M = Ca, Sr, Ba) revealed that the metal-ligand bonding can be straightforwardly discussed using the traditional Dewar-Chatt-Duncanson (DCD) model as in classical transition-metal complexes. The metal-ligand bonds can be explained with metal → ligand π back donation from occupied metal (n - 1)d AOs to vacant antibonding π molecular orbitals of the ligands with concomitant σ donation from occupied MOs of the ligands to vacant metal d orbitals of the alkaline earth atoms. In addition, heteronuclear Ca-Fe carbonyl cation complexes were also produced in the gas phase. Bonding analysis of the coordination saturated [CaFe(CO)₁₀]⁺ complex implies that it can be described by the bonding interactions between a [Ca(CO)₆]²⁺ fragment and an [Fe(CO)₄]^- anion fragment in forming a Fe → Ca d-d dative bond. The nature of metal-ligand and metal-metal bonding was quantitatively elucidated by the energy decomposition analysis in conjunction with the natural orbitals for the chemical valence (EDA-NOCV) method, which indicate that the (n - 1)d AOs of the alkaline earth metals are the dominant orbitals participating in the covalent interactions, just as typical transition metals. The results indicate that the heavier alkaline earth elements have a much richer covalent chemistry than previously thought. These findings, along with earlier studies, suggest that the heavier alkaline earth atoms Ca, Sr, and Ba should be classified as transition metals rather than main group atoms in the periodic table of the elements. This interesting structural chemistry, together with some recently reported examples of spectacular reactivity, establishes these elements as exciting and promising research targets in current research.

Small Amount Makes a Big Difference: Critical (n - 1)d Valence Orbitals of Heavy Alkaline Earth Metals inside Cage Clusters

Heavy alkaline earth metals (Aes) are usually considered to engage in chemical bonding by donating the two electrons on ns atomic orbitals (AOs). In this work, a series of typical endohedrally doped cage clusters Ae@cage (Ae = Ca, Sr, Ba; cage = C₃₂, C₇₄, C₉₄, B₄₀, Si₂₀, Sn₁₂, Au₁₆) were thoroughly investigated by means of density functional theory calculations. We found that their occupied molecular orbitals have ∼1 to 14% contributions from Ae-(n - 1)d AOs due to electron back-donation from the cage. Though the amount is small, it is hard to ignore: with the d orbitals, all these endohedral clusters exhibit obviously shortened Ae-cage distances, greatly enhanced encapsulation stabilities, changed highest occupied molecular orbital-lowest unoccupied molecular orbital (HOMO-LUMO) gaps, and much lowered Ae valences far from ideal +2. Evidently, the valence orbitals of Ca/Sr/Ba in these systems should include both ns and (n - 1)d. By disclosing the critical role of unnoticed metal orbitals, our work provides completely new insights into the cluster field.

Metal-CO Bonding in Mononuclear Transition Metal Carbonyl Complexes

DFT calculations have been carried out for coordinatively saturated neutral and charged carbonyl complexes [M(CO) _n ] ^q where M is a metal atom of groups 2-10. The model compounds M(CO)₂ (M = Ca, Sr, Ba) and the experimentally observed [Ba(CO)]⁺ were also studied. The bonding situation has been analyzed with a variety of charge and energy partitioning approaches. It is shown that the Dewar-Chatt-Duncanson model in terms of M ← CO σ-donation and M → CO π-backdonation is a valid approach to explain the M-CO bonds and the trend of the CO stretching frequencies. The carbonyl ligands of the neutral complexes carry a negative charge, and the polarity of the M-CO bonds increases for the less electronegative metals, which is particularly strong for the group 4 and group 2 atoms. The NBO method delivers an unrealistic charge distribution in the carbonyl complexes, while the AIM approach gives physically reasonable partial charges that are consistent with the EDA-NOCV calculations and with the trend of the C-O stretching frequencies. The AdNDP method provides delocalized MOs which are very useful models for the carbonyl complexes. Deep insight into the nature of the metal-CO bonds and quantitative information about the strength of the [M] ← (CO)₈ σ-donation and [M(d)] → (CO)₈ π-backdonation visualized by the deformation densities are provided by the EDA-NOCV method. The large polarity of the M-CO π orbitals toward the CO end in the alkaline earth octacarbonyls M(CO)₈ (M = Ca, Sr, Ba) leads to small values for the delocalization indices δ(M-C) and δ(M···O) and significant overlap between adjacent CO groups, but the origin of the charge migration and the associated red-shift of the C-O stretching frequencies is the [M(d)] → (CO)₈ π-backdonation. The heavier alkaline earth metals calcium, strontium and barium use their s/d valence orbitals for covalent bonding. They are therefore to be assigned to the transition metals.

A novel Co-based MOF/Pd composite: synergy of charge-transfer towards the electrocatalytic oxygen evolution reaction

A novel Co-based MOF/Pd composite (LEEL-037/Pd-C) presented an electronic transference (Co 3d orbital → linkers π* → Pd 5S orbital) promoting an enhanced OH⁻ adsorption, thus improving the oxygen evolution reaction (OER) in alkaline medium.

The Valence Orbitals of the Alkaline-Earth Atoms

Quantum chemical calculations of the alkaline-earth oxides, imides and dihydrides of the alkaline-earth atoms (Ae=Be, Mg, Ca, Sr, Ba) and the calcium cluster Ca6 H9 [N(SiMe3 )2 ]3 (pmdta)3 (pmdta=N,N,N',N'',N''-pentamethyldiethylenetriamine) have been carried out by using density functional theory. Analysis of the electronic structures by charge and energy partitioning methods suggests that the valence orbitals of the lighter atoms Be and Mg are the (n)s and (n)p orbitals. In contrast, the valence orbitals of the heavier atoms Ca, Sr and Ba comprise the (n)s and (n-1)d orbitals. The alkaline-earth metals Be and Mg build covalent bonds like typical main-group elements, whereas Ca, Sr and Ba covalently bind like transition metals. The results not only shed new light on the covalent bonds of the heavier alkaline-earth metals, but are also very important for understanding and designing experimental studies.

Alkaline Earth Metals Activate N2 and CO in Cubic Complexes Just Like Transition Metals: A Conceptual Density Functional Theory and Energy Decomposition Analysis Study

Following the recent discovery of stable octa-coordinated alkaline earth metals with N2 and CO, the role of group II metals in the catalytic reduction of these ligands by means of density functional theory (DFT) calculations and conceptual DFT-based reactivity indices is investigated. Cubic group IV and octahedral group VI transition metal complexes as well as the free ligands are computed for reference. The outer and most accessible atoms of N2 and CO become much more nucleophilic and electrophilic in all complexes, relevant for N2 fixation, as probed by the Fukui function and local softness. Within one row of the periodic table, the alkaline earth complexes often show the strongest activation. On the contrary, the electrostatic character is found to be virtually unaffected by complexation. Trends in the soft frontier orbital and hard electrostatic character are in agreement with calculated proton affinities and energy decomposition analyses of the protonated structures, demonstrating the dominance of the soft (HOMO-LUMO) orbital interactions.

Substituent Effect Parameters: Extending the Applications to Organometallic Chemistry

Typically, metal complexes are constituted of an acceptor metal ion and one or more Iigands containing the donor atoms. Accordingly, the properties of a metal complex are equally dependent on the nature of the metal ion and the ligands. Minute structural variations in the ligand will may result in linear changes in the respective energetic parameters and such linear relationships have paramount importance in organometallic chemistry. The variation in ligands is virtually limitless and substantial because of the extent of organic chemistry available for the modelling of desirable ligands, apart from the variation in metal ions. Anyhow, there is still a need for new parameters for the design and quantification of new ligands which in turn leads to the synthesis of metal complexes with possibly predictable chemical properties. Previous studies have demonstrated that quantum chemically derived molecular electrostatic potential (MESP) parameters can be listed as one of the superior quantifiers in this regard, which can act as an effective ligand electronic parameter. The interaction between the ligand part and metal-containing part will be crucial in assessing the reactivity of organometallic complexes. Here we are applying MESP based substituent constants derived from substituted benzenes to forecast the interaction energies in (pyr^* )W(CO)₅ , (NHC^* )Mo(CO)₅ and (η⁶ -arene^* )Cr(CO)₃ complexes. Ligands and metal ions are varied in each case for better understanding and transparency.

Comment on “Revisiting π backbonding: the influence of d orbitals on metal–CO bonds and ligand red shifts” by D. Koch, Y. Chen, P. Golub and S. Manzhos, Phys. Chem. Chem. Phys., 2019, 21, 20814

We challenge the statement of Koch et al. that the M → CO charge transfer and the decrease of the CO stretching frequency in metal carbonyl complexes do not depend on the metal d orbitals.

Reply to the ‘Comment on “Revisiting π backbonding: the influence of d orbitals on metal–CO bonds and ligand red shifts”’ by G. Frenking and S. Pan, Phys. Chem. Chem. Phys., 2019, 22, DOI: 10.1039/C9CP05951B

We respond to the comment by Pan and Frenking with regard to our investigation on transition and alkaline earth metal d orbital influence on their bonding to carbonyl ligands to clarify misconceptions.