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Energy Deposition around Swift Carbon-Ion Tracks in Liquid Water. Int J Mol Sci 2022; 23:ijms23116121. [PMID: 35682798 PMCID: PMC9181504 DOI: 10.3390/ijms23116121] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2022] [Revised: 05/23/2022] [Accepted: 05/26/2022] [Indexed: 12/15/2022] Open
Abstract
Energetic carbon ions are promising projectiles used for cancer radiotherapy. A thorough knowledge of how the energy of these ions is deposited in biological media (mainly composed of liquid water) is required. This can be attained by means of detailed computer simulations, both macroscopically (relevant for appropriately delivering the dose) and at the nanoscale (important for determining the inflicted radiobiological damage). The energy lost per unit path length (i.e., the so-called stopping power) of carbon ions is here theoretically calculated within the dielectric formalism from the excitation spectrum of liquid water obtained from two complementary approaches (one relying on an optical-data model and the other exclusively on ab initio calculations). In addition, the energy carried at the nanometre scale by the generated secondary electrons around the ion's path is simulated by means of a detailed Monte Carlo code. For this purpose, we use the ion and electron cross sections calculated by means of state-of-the art approaches suited to take into account the condensed-phase nature of the liquid water target. As a result of these simulations, the radial dose around the ion's path is obtained, as well as the distributions of clustered events in nanometric volumes similar to the dimensions of DNA convolutions, contributing to the biological damage for carbon ions in a wide energy range, covering from the plateau to the maximum of the Bragg peak.
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Koval NE, Koval P, Da Pieve F, Kohanoff J, Artacho E, Emfietzoglou D. Inelastic scattering of electrons in water from first principles: cross sections and inelastic mean free path for use in Monte Carlo track-structure simulations of biological damage. ROYAL SOCIETY OPEN SCIENCE 2022. [PMID: 35619995 DOI: 10.5061/dryad.d51c5b057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Modelling the inelastic scattering of electrons in water is fundamental, given their crucial role in biological damage. In Monte Carlo track-structure (MC-TS) codes used to assess biological damage, the energy loss function (ELF), from which cross sections are extracted, is derived from different semi-empirical optical models. Only recently have first ab initio results for the ELF and cross sections in water become available. For benchmarking purpose, in this work, we present ab initio linear-response time-dependent density functional theory calculations of the ELF of liquid water. We calculated the inelastic scattering cross sections, inelastic mean free paths, and electronic stopping power and compared our results with recent calculations and experimental data showing a good agreement. In addition, we provide an in-depth analysis of the contributions of different molecular orbitals, species and orbital angular momenta to the total ELF. Moreover, we present single-differential cross sections computed for each molecular orbital channel, which should prove useful for MC-TS simulations.
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Affiliation(s)
| | - Peter Koval
- Simune Atomistics SL, 20018 Donostia-San Sebastián, Spain
| | - Fabiana Da Pieve
- Royal Belgian Institute for Space Aeronomy BIRA-IASB, 1180 Brussels, Belgium
| | - Jorge Kohanoff
- Queen's University Belfast, Belfast BT7 1NN, UK
- Instituto de Fusion Nuclear 'Guillermo Velarde', Universidad Politecnica de Madrid, 28006 Madrid, Spain
| | - Emilio Artacho
- CIC Nanogune BRTA, 20018 Donostia-San Sebastián, Spain
- Donostia International Physics Center DIPC, 20018 Donostia-San Sebastián, Spain
- Ikerbasque, Basque Foundation for Science, 48011 Bilbao, Spain
- Theory of Condensed Matter, Cavendish Laboratory, University of Cambridge, Cambridge CB3 0HE, UK
| | - Dimitris Emfietzoglou
- Medical Physics Laboratory, University of Ioannina Medical School, 45110 Ioannina, Greece
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Koval NE, Koval P, Da Pieve F, Kohanoff J, Artacho E, Emfietzoglou D. Inelastic scattering of electrons in water from first principles: cross sections and inelastic mean free path for use in Monte Carlo track-structure simulations of biological damage. ROYAL SOCIETY OPEN SCIENCE 2022; 9:212011. [PMID: 35619995 PMCID: PMC9115040 DOI: 10.1098/rsos.212011] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Accepted: 04/19/2022] [Indexed: 05/03/2023]
Abstract
Modelling the inelastic scattering of electrons in water is fundamental, given their crucial role in biological damage. In Monte Carlo track-structure (MC-TS) codes used to assess biological damage, the energy loss function (ELF), from which cross sections are extracted, is derived from different semi-empirical optical models. Only recently have first ab initio results for the ELF and cross sections in water become available. For benchmarking purpose, in this work, we present ab initio linear-response time-dependent density functional theory calculations of the ELF of liquid water. We calculated the inelastic scattering cross sections, inelastic mean free paths, and electronic stopping power and compared our results with recent calculations and experimental data showing a good agreement. In addition, we provide an in-depth analysis of the contributions of different molecular orbitals, species and orbital angular momenta to the total ELF. Moreover, we present single-differential cross sections computed for each molecular orbital channel, which should prove useful for MC-TS simulations.
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Affiliation(s)
| | - Peter Koval
- Simune Atomistics SL, 20018 Donostia-San Sebastián, Spain
| | - Fabiana Da Pieve
- Royal Belgian Institute for Space Aeronomy BIRA-IASB, 1180 Brussels, Belgium
| | - Jorge Kohanoff
- Queen’s University Belfast, Belfast BT7 1NN, UK
- Instituto de Fusion Nuclear ‘Guillermo Velarde’, Universidad Politecnica de Madrid, 28006 Madrid, Spain
| | - Emilio Artacho
- CIC Nanogune BRTA, 20018 Donostia-San Sebastián, Spain
- Donostia International Physics Center DIPC, 20018 Donostia-San Sebastián, Spain
- Ikerbasque, Basque Foundation for Science, 48011 Bilbao, Spain
- Theory of Condensed Matter, Cavendish Laboratory, University of Cambridge, Cambridge CB3 0HE, UK
| | - Dimitris Emfietzoglou
- Medical Physics Laboratory, University of Ioannina Medical School, 45110 Ioannina, Greece
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Gadeyne T, Zhang P, Schild A, Wörner HJ. Low-energy electron distributions from the photoionization of liquid water: a sensitive test of electron mean free paths. Chem Sci 2022; 13:1675-1692. [PMID: 35282614 PMCID: PMC8826766 DOI: 10.1039/d1sc06741a] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2021] [Accepted: 01/06/2022] [Indexed: 11/21/2022] Open
Abstract
The availability of accurate mean free paths for slow electrons (<50 eV) in water is central to the understanding of many electron-driven processes in aqueous solutions, but their determination poses major challenges to experiment and theory alike. Here, we describe a joint experimental and theoretical study demonstrating a novel approach for testing, and, in the future, refining such mean free paths. We report the development of Monte-Carlo electron-trajectory simulations including elastic and inelastic electron scattering, as well as energy loss and secondary-electron production to predict complete photoelectron spectra of liquid water. These simulations are compared to a new set of photoelectron spectra of a liquid-water microjet recorded over a broad range of photon energies in the extreme ultraviolet (20-57 eV). Several previously published sets of scattering parameters are investigated, providing direct and intuitive insights on how they influence the shape of the low-energy electron spectra. A pronounced sensitivity to the escape barrier is also demonstrated. These simulations considerably advance our understanding of the origin of the prominent low-energy electron distributions in photoelectron spectra of liquid water and clarify the influence of scattering parameters and the escape barrier on their shape. They moreover describe the reshaping and displacement of low-energy photoelectron bands caused by vibrationally inelastic scattering. Our work provides a quantitative basis for the interpretation of the complete photoelectron spectra of liquids and opens the path to fully predictive simulations of low-energy scattering in liquid water.
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Affiliation(s)
- Titouan Gadeyne
- Laboratory for Physical Chemistry, ETH Zürich Vladimir-Prelog-Weg 2 8093 Zürich Switzerland
- Département de Chimie, École Normale Supérieure, PSL University 75005 Paris France
| | - Pengju Zhang
- Laboratory for Physical Chemistry, ETH Zürich Vladimir-Prelog-Weg 2 8093 Zürich Switzerland
| | - Axel Schild
- Laboratory for Physical Chemistry, ETH Zürich Vladimir-Prelog-Weg 2 8093 Zürich Switzerland
| | - Hans Jakob Wörner
- Laboratory for Physical Chemistry, ETH Zürich Vladimir-Prelog-Weg 2 8093 Zürich Switzerland
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Carvalho A, Trevisanutto PE, Taioli S, Castro Neto AH. Computational methods for 2D materials modelling. REPORTS ON PROGRESS IN PHYSICS. PHYSICAL SOCIETY (GREAT BRITAIN) 2021; 84:106501. [PMID: 34474406 DOI: 10.1088/1361-6633/ac2356] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2021] [Accepted: 09/02/2021] [Indexed: 06/13/2023]
Abstract
Materials with thickness ranging from a few nanometers to a single atomic layer present unprecedented opportunities to investigate new phases of matter constrained to the two-dimensional plane. Particle-particle Coulomb interaction is dramatically affected and shaped by the dimensionality reduction, driving well-established solid state theoretical approaches to their limit of applicability. Methodological developments in theoretical modelling and computational algorithms, in close interaction with experiments, led to the discovery of the extraordinary properties of two-dimensional materials, such as high carrier mobility, Dirac cone dispersion and bright exciton luminescence, and inspired new device design paradigms. This review aims to describe the computational techniques used to simulate and predict the optical, electronic and mechanical properties of two-dimensional materials, and to interpret experimental observations. In particular, we discuss in detail the particular challenges arising in the simulation of two-dimensional constrained fermions and quasiparticles, and we offer our perspective on the future directions in this field.
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Affiliation(s)
- A Carvalho
- Centre for Advanced 2D Materials, National University of Singapore, 6 Science Drive 2, 117546, Singapore
| | - P E Trevisanutto
- European Centre for Theoretical Studies in Nuclear Physics and Related Areas (ECT*-FBK) and Trento Institute for Fundamental Physics and Applications (TIFPA-INFN), Via Sommarive, 14, 38123 Povo TN, Trento, Italy
| | - S Taioli
- European Centre for Theoretical Studies in Nuclear Physics and Related Areas (ECT*-FBK) and Trento Institute for Fundamental Physics and Applications (TIFPA-INFN), Via Sommarive, 14, 38123 Povo TN, Trento, Italy
- Peter the Great St. Petersburg Polytechnic University, Polytechnicheskaya 29, St. Petersburg 195251, Russia
| | - A H Castro Neto
- Centre for Advanced 2D Materials, National University of Singapore, 6 Science Drive 2, 117546, Singapore
- Materials Science and Engineering, National University of Singapore, 9 Engineering Drive 1, 117575, Singapore
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Pedrielli A, de Vera P, Trevisanutto PE, Pugno NM, Garcia-Molina R, Abril I, Taioli S, Dapor M. Electronic excitation spectra of cerium oxides: from ab initio dielectric response functions to Monte Carlo electron transport simulations. Phys Chem Chem Phys 2021; 23:19173-19187. [PMID: 34357365 DOI: 10.1039/d1cp01810h] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Nanomaterials made of cerium oxides CeO2 and Ce2O3 have a broad range of applications, from catalysts in automotive, industrial or energy operations to promising materials to enhance hadrontherapy effectiveness in oncological treatments. To elucidate the physico-chemical mechanisms involved in these processes, it is of paramount importance to know the electronic excitation spectra of these oxides, which are obtained here through high-accuracy linear-response time-dependent density functional theory calculations. In particular, the macroscopic dielectric response functions of both bulk CeO2 and Ce2O3 are derived, which compare remarkably well with the available experimental data. These results stress the importance of appropriately accounting for local field effects to model the dielectric function of metal oxides. Furthermore, we reckon the energy loss functions Im(-1/) of the materials, including the accurate evaluation of the momentum transfer dispersion from first-principles calculations. In this respect, by using Mermin-type parametrization we are able to model the contribution of different electronic excitations to the dielectric loss function. Finally, from the knowledge of the electron inelastic mean free path, together with the elastic mean free path provided by the relativistic Mott theory, we carry out statistical Monte Carlo (MC) electron transport simulations to reproduce the major features of the reported experimental reflection electron energy loss (REEL) spectra of cerium oxides. The good agreement with REEL experimental data strongly supports our approach based on MC modelling, whose main inputs were obtained using ab initio calculated electronic excitation spectra in a broad range of momentum and energy transfers.
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Affiliation(s)
- Andrea Pedrielli
- European Centre for Theoretical Studies in Nuclear Physics and Related Areas (ECT*-Bruno Kessler Foundation) and Trento Institute for Fundamental Physics and Applications (TIFPA-INFN), Trento, Italy. .,Laboratory of Bio-Inspired, Bionic, Nano, Meta Materials & Mechanics, Department of Civil, Environmental and Mechanical Engineering, University of Trento, Italy
| | - Pablo de Vera
- European Centre for Theoretical Studies in Nuclear Physics and Related Areas (ECT*-Bruno Kessler Foundation) and Trento Institute for Fundamental Physics and Applications (TIFPA-INFN), Trento, Italy.
| | | | - Nicola M Pugno
- Laboratory of Bio-Inspired, Bionic, Nano, Meta Materials & Mechanics, Department of Civil, Environmental and Mechanical Engineering, University of Trento, Italy.,School of Engineering and Materials Science, Queen Mary University of London, UK
| | - Rafael Garcia-Molina
- Departamento de Física, Centro de Investigación en Óptica y Nanofísica, Universidad de Murcia, Spain
| | - Isabel Abril
- Departament de Física Aplicada, Universitat d'Alacant, Spain
| | - Simone Taioli
- European Centre for Theoretical Studies in Nuclear Physics and Related Areas (ECT*-Bruno Kessler Foundation) and Trento Institute for Fundamental Physics and Applications (TIFPA-INFN), Trento, Italy. .,Peter the Great St. Petersburg Polytechnic University, Russia
| | - Maurizio Dapor
- European Centre for Theoretical Studies in Nuclear Physics and Related Areas (ECT*-Bruno Kessler Foundation) and Trento Institute for Fundamental Physics and Applications (TIFPA-INFN), Trento, Italy.
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