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Alam MS, Penedo M, Sumikama T, Miyazawa K, Hirahara K, Fukuma T. Revealing the Mechanism Underlying 3D-AFM Imaging of Suspended Structures by Experiments and Simulations. SMALL METHODS 2024:e2400287. [PMID: 39031872 DOI: 10.1002/smtd.202400287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Revised: 06/06/2024] [Indexed: 07/22/2024]
Abstract
The invention of 3D atomic force microscopy (3D-AFM) has enabled visualizing subnanoscale 3D hydration structures. Meanwhile, its applications to imaging flexible molecular chains have started to be experimentally explored. However, the validity and principle of such imaging have yet to be clarified by comparing experiments and simulations or cross-observations with an alternative technique. Such studies are impeded by the lack of an appropriate model. Here, this difficulty is overcome by fabricating 3D carbon nanotube (CNT) structures flexible enough for 3D-AFM, large enough for scanning electron microscopy (SEM), and simple enough for simulations. SEM and 3D-AFM observations of the same model provide unambiguous evidence to support the possibility of imaging overlapped nanostructures, such as suspended CNT and underlying platinum (Pt) nanodots. Langevin dynamics simulations of such 3D-AFM imaging clarify the imaging mechanism, where the flexible CNT is laterally displaced to allow the AFM probe access to the underlying structures. These results consistently show that 3D-AFM images are affected by the friction between the CNT and AFM nanoprobe, yet it can be significantly suppressed by oscillating the cantilever. This study reinforces the theoretical basis of 3D-AFM for imaging various 3D self-organizing systems in diverse fields, from life sciences to interface sciences.
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Affiliation(s)
- Mohammad Shahidul Alam
- Division of Nano Life Science, Kanazawa University, Kakuma-machi, Kanazawa, 920-1192, Japan
| | - Marcos Penedo
- École Polytechnique Fédérale de Lausanne, Institute for Bioengineering, Laboratory for Bio and Nanoinstrumentation, Lausanne, CH 1015, Switzerland
| | - Takashi Sumikama
- WPI Nano Life Science Institute (WPI-Nano LSI), Kanazawa University, Kakuma-machi, Kanazawa, 920-1192, Japan
| | - Keisuke Miyazawa
- WPI Nano Life Science Institute (WPI-Nano LSI), Kanazawa University, Kakuma-machi, Kanazawa, 920-1192, Japan
- Faculty of Frontier Engineering, Kanazawa University, Kakuma-machi, Kanazawa, 920-1192, Japan
| | - Kaori Hirahara
- Department of Mechanical Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan
| | - Takeshi Fukuma
- Division of Nano Life Science, Kanazawa University, Kakuma-machi, Kanazawa, 920-1192, Japan
- WPI Nano Life Science Institute (WPI-Nano LSI), Kanazawa University, Kakuma-machi, Kanazawa, 920-1192, Japan
- Faculty of Frontier Engineering, Kanazawa University, Kakuma-machi, Kanazawa, 920-1192, Japan
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Nagai S, Urata S, Suga K, Fukuma T, Hayashi Y, Miyazawa K. Three-dimensional ordering of water molecules reflecting hydroxyl groups on sapphire (001) and α-quartz (100) surfaces. NANOSCALE 2023; 15:13262-13271. [PMID: 37539559 DOI: 10.1039/d3nr02498a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/05/2023]
Abstract
Water molecules on oxide surfaces influence the chemical reactivity and molecular adsorption behavior of oxides. Herein, three-dimensional atomic force microscopy (3D-AFM) and molecular dynamics simulations are used to visualize the surface hydroxyl (OH) groups and their hydration structures on sapphire (001) and α-quartz (100) surfaces at the atomic-scale. The obtained results revealed that the spatial density distributions and hydrogen-bonding strengths of surface OH groups affect their local hydration structures. In particular, the force curves obtained by 3D-AFM suggest that the hydration forces of water molecules intensify at sites where water molecules strongly interact with the surface OH groups. The insights obtained in this study deepen our understanding of the affinities of Al2O3 and SiO2 for water molecules and contribute to the use of 3D-AFM in the investigation of atomic-scale hydration structures on various surfaces, thereby benefiting a wide range of research fields dealing with solid-liquid interfaces.
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Affiliation(s)
- Sho Nagai
- Innovative Technology Laboratories, AGC Inc., 1-1 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
| | - Shingo Urata
- Planning Division, AGC Inc., 1-1 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
| | - Kent Suga
- Innovative Technology Laboratories, AGC Inc., 1-1 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
| | - Takeshi Fukuma
- Faculty of Frontier Engineering, Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan.
- Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
| | - Yasuo Hayashi
- Innovative Technology Laboratories, AGC Inc., 1-1 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
| | - Keisuke Miyazawa
- Faculty of Frontier Engineering, Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan.
- Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
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3
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Ranawat YS, Jaques YM, Foster AS. Generalised deep-learning workflow for the prediction of hydration layers over surfaces. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.120571] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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John S, Kühnle A. Hydration Structure at the Calcite-Water (10.4) Interface in the Presence of Rubidium Chloride. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2022; 38:11691-11698. [PMID: 36120896 DOI: 10.1021/acs.langmuir.2c01745] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Solid-liquid interfaces are of significant importance in a multitude of geochemical and technological fields. More specifically, the solvation structure plays a decisive role in the properties of the interfaces. Atomic force microscopy (AFM) has been used to resolve the interfacial hydration structure in the presence and absence of ions. Despite many studies investigating the calcite-water interface, the impact of ions on the hydration structure at this interface has rarely been studied. Here, we investigate the calcite-water interface at various concentrations (ranging from 0 to 5 M) of rubidium chloride (RbCl) using three-dimensional atomic force microscopy (3D AFM). We present molecularly resolved images of the hydration structure at the interface. Interestingly, the characteristic pattern of the hydration structure appears similar regardless of the RbCl concentration. The presence of the ions is detected in an indirect manner by more frequent contrast changes and slice displacements.
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Affiliation(s)
- Simon John
- Physical Chemistry I, Faculty of Chemistry, Bielefeld University, Universitätsstraße 25, 33615 Bielefeld, Germany
| | - Angelika Kühnle
- Physical Chemistry I, Faculty of Chemistry, Bielefeld University, Universitätsstraße 25, 33615 Bielefeld, Germany
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Yurtsever A, Wang PX, Priante F, Morais Jaques Y, Miyata K, MacLachlan MJ, Foster AS, Fukuma T. Probing the Structural Details of Chitin Nanocrystal-Water Interfaces by Three-Dimensional Atomic Force Microscopy. SMALL METHODS 2022; 6:e2200320. [PMID: 35686343 DOI: 10.1002/smtd.202200320] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Revised: 05/04/2022] [Indexed: 06/15/2023]
Abstract
Chitin is one of the most abundant and renewable natural biopolymers. It exists in the form of crystalline microfibrils and is the basic structural building block of many biological materials. Its surface crystalline structure is yet to be reported at the molecular level. Herein, atomic force microscopy (AFM) in combination with molecular dynamics simulations reveals the molecular-scale structural details of the chitin nanocrystal (chitin NC)-water interface. High-resolution AFM images reveal the molecular details of chitin chain arrangements at the surfaces of individual chitin NCs, showing highly ordered, stable crystalline structures almost free of structural defects or disorder. 3D-AFM measurements with submolecular spatial resolution demonstrate that chitin NC surfaces interact strongly with interfacial water molecules creating stable, well-ordered hydration layers. Inhomogeneous encapsulation of the underlying chitin substrate by these hydration layers reflects the chitin NCs' multifaceted surface character with different chain arrangements and molecular packing. These findings provide important insights into chitin NC structures at the molecular level, which is critical for developing the properties of chitin-based nanomaterials. Furthermore, these results will contribute to a better understanding of the chemical and enzymatic hydrolysis of chitin and other native polysaccharides, which is also essential for the enzymatic conversion of biomass.
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Affiliation(s)
- Ayhan Yurtsever
- WPI Nano Life Science Institute (WPI-Nano LSI), Kanazawa University, Kakuma-machi, Kanazawa, 920-1192, Japan
| | - Pei-Xi Wang
- Department of Chemistry, University of British Columbia 2036 Main Mall, Vancouver, V6T 1Z1, Canada
| | - Fabio Priante
- Department of Applied Physics, Aalto University, FI-00076, Helsinki, Finland
| | - Ygor Morais Jaques
- Department of Applied Physics, Aalto University, FI-00076, Helsinki, Finland
| | - Kazuki Miyata
- WPI Nano Life Science Institute (WPI-Nano LSI), Kanazawa University, Kakuma-machi, Kanazawa, 920-1192, Japan
| | - Mark J MacLachlan
- WPI Nano Life Science Institute (WPI-Nano LSI), Kanazawa University, Kakuma-machi, Kanazawa, 920-1192, Japan
- Department of Chemistry, University of British Columbia 2036 Main Mall, Vancouver, V6T 1Z1, Canada
| | - Adam S Foster
- WPI Nano Life Science Institute (WPI-Nano LSI), Kanazawa University, Kakuma-machi, Kanazawa, 920-1192, Japan
- Department of Applied Physics, Aalto University, FI-00076, Helsinki, Finland
| | - Takeshi Fukuma
- WPI Nano Life Science Institute (WPI-Nano LSI), Kanazawa University, Kakuma-machi, Kanazawa, 920-1192, Japan
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De Yoreo JJ, Nakouzi E, Jin B, Chun J, Mundy CJ. Assembly-based pathways of crystallization. Faraday Discuss 2022; 235:9-35. [DOI: 10.1039/d2fd00061j] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Solution crystallization of materials ranging from simple salts to complex supramolecular assemblies has long been viewed through the lens of classical nucleation and growth theories in which monomeric building blocks...
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Benaglia S, Uhlig MR, Hernández-Muñoz J, Chacón E, Tarazona P, Garcia R. Tip Charge Dependence of Three-Dimensional AFM Mapping of Concentrated Ionic Solutions. PHYSICAL REVIEW LETTERS 2021; 127:196101. [PMID: 34797127 DOI: 10.1103/physrevlett.127.196101] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2021] [Accepted: 10/05/2021] [Indexed: 06/13/2023]
Abstract
A molecular scale understanding of the organization and structure of a liquid near a solid surface is currently a major challenge in surface science. It has implications across different fields from electrochemistry and energy storage to molecular biology. Three-dimensional AFM generates atomically resolved maps of solid-liquid interfaces. The imaging mechanism behind those maps is under debate, in particular, for concentrated ionic solutions. Theory predicts that the observed contrast should depend on the tip's charged state. Here, by using neutrally, negatively, and positively charged tips, we demonstrate that the 3D maps depend on the tip's polarization. A neutral tip will explore the total particle density distribution (water and ions) while a charged tip will reveal the charge density distribution. The experimental data reproduce the key findings of the theory.
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Affiliation(s)
- Simone Benaglia
- Instituto de Ciencia de Materiales de Madrid, Consejo Superior de Investigaciones Científicas, Madrid 28049, Spain
| | - Manuel R Uhlig
- Instituto de Ciencia de Materiales de Madrid, Consejo Superior de Investigaciones Científicas, Madrid 28049, Spain
| | - Jose Hernández-Muñoz
- Departamento de Física Teórica de la Materia Condensada, IFIMAC Condensed Matter Physics Center, Universidad Autónoma de Madrid, Madrid 28049, Spain
| | - Enrique Chacón
- Instituto de Ciencia de Materiales de Madrid, Consejo Superior de Investigaciones Científicas, Madrid 28049, Spain
| | - Pedro Tarazona
- Departamento de Física Teórica de la Materia Condensada, IFIMAC Condensed Matter Physics Center, Universidad Autónoma de Madrid, Madrid 28049, Spain
| | - Ricardo Garcia
- Instituto de Ciencia de Materiales de Madrid, Consejo Superior de Investigaciones Científicas, Madrid 28049, Spain
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Ranawat YS, Jaques YM, Foster AS. Predicting hydration layers on surfaces using deep learning. NANOSCALE ADVANCES 2021; 3:3447-3453. [PMID: 36133729 PMCID: PMC9419798 DOI: 10.1039/d1na00253h] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/03/2021] [Accepted: 05/03/2021] [Indexed: 06/16/2023]
Abstract
Characterisation of the nanoscale interface formed between minerals and water is essential to the understanding of natural processes, such as biomineralization, and to develop new technologies where function is dominated by the mineral-water interface. Atomic force microscopy offers the potential to characterize solid-liquid interfaces in high-resolution, with several experimental and theoretical studies offering molecular scale resolution by linking measurements directly to water density on the surface. However, the theoretical techniques used to interpret such results are computationally intensive and development of the approach has been limited by interpretation challenges. In this work, we develop a deep learning architecture to learn the solid-liquid interface of polymorphs of calcium carbonate, allowing for the rapid predictions of density profiles with reasonable accuracy.
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Affiliation(s)
| | - Ygor M Jaques
- Department of Applied Physics, Aalto University Finland
| | - Adam S Foster
- Department of Applied Physics, Aalto University Finland
- WPI Nano Life Science Institute (WPI-NanoLSI), Kanazawa University Kakuma-machi Kanazawa 920-1192 Japan
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9
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Hashimoto K, Amano KI, Nishi N, Onishi H, Sakka T. Comparison of atomic force microscopy force curve and solvation structure studied by integral equation theory. J Chem Phys 2021; 154:164702. [PMID: 33940841 DOI: 10.1063/5.0046600] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Atomic force microscopy can observe structures of liquids (solvents) on solid surfaces as oscillating force curves. The oscillation originates from the solvation force, which is affected by the interaction between the probe, substrate, and solvents. To investigate the effects of the interactions on the force curve, we calculated the force curves by integral equation theory with various probe and substrate conditions. The probe solvophilicity affected the force curves more than the substrate solvophilicity in our calculation, and its reason is qualitatively explained by the amount of the desolvated solvents. We evaluated the probes and parameters in terms of the qualitative estimation of the number density distribution of the solvent on the wall. The negative of the force curve's derivative with respect to the surface separation reflected the number density distribution better than the force curve. This parameter is based on the method that is proposed previously by Amano et al. [Phys. Chem. Chem. Phys. 18, 15534 (2016)]. The normalized frequency shift can also be used for the qualitative estimation of the number density distribution if the cantilever amplitude is small. Solvophobic probes reflected the number density distribution better than the solvophilic probes. Solvophilic probes resulted in larger oscillation amplitudes than solvophobic probes and are suitable for measurements with a high S/N ratio.
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Affiliation(s)
- Kota Hashimoto
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University, Kyoto 615-8510, Japan
| | - Ken-Ichi Amano
- Faculty of Agriculture, Meijo University, 1-501 Shiogamaguchi, Tenpaku, Nagoya 468-8502, Japan
| | - Naoya Nishi
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University, Kyoto 615-8510, Japan
| | - Hiroshi Onishi
- Department of Chemistry, Graduate School of Science, Kobe University, Nada, Kobe, Hyogo 657-8501, Japan
| | - Tetsuo Sakka
- Department of Energy and Hydrocarbon Chemistry, Graduate School of Engineering, Kyoto University, Kyoto 615-8510, Japan
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Uhlig MR, Benaglia S, Thakkar R, Comer J, Garcia R. Atomically resolved interfacial water structures on crystalline hydrophilic and hydrophobic surfaces. NANOSCALE 2021; 13:5275-5283. [PMID: 33624666 DOI: 10.1039/d1nr00351h] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Hydration layers are formed on hydrophilic crystalline surfaces immersed in water. Their existence has also been predicted for hydrophobic surfaces, yet the experimental evidence is controversial. Using 3D-AFM imaging, we probed the interfacial water structure of hydrophobic and hydrophilic surfaces with atomic-scale spatial resolution. We demonstrate that the atomic-scale structure of interfacial water on crystalline surfaces presents two antagonistic arrangements. On mica, a common hydrophilic crystalline surface, the interface is characterized by the formation of 2 to 3 hydration layers separated by approximately 0.3 nm. On hydrophobic surfaces such as graphite or hexagonal boron nitride (h-BN), the interface is characterized by the formation of 2 to 4 layers separated by about 0.5 nm. The latter interlayer distance indicates that water molecules are expelled from the vicinity of the surface and replaced by hydrocarbon molecules. This creates a new 1.5-2 nm thick interface between the hydrophobic surface and the bulk water. Molecular dynamics simulations reproduced the experimental data and confirmed the above interfacial water structures.
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Affiliation(s)
- Manuel R Uhlig
- Instituto de Ciencia de Materiales de Madrid, CSIC, c/Sor Juana Inés de la Cruz 3, 28049 Madrid, Spain.
| | - Simone Benaglia
- Instituto de Ciencia de Materiales de Madrid, CSIC, c/Sor Juana Inés de la Cruz 3, 28049 Madrid, Spain.
| | - Ravindra Thakkar
- Nanotechnology Innovation Center of Kansas State, Department of Anatomy and Physiology, Kansas State University, Manhattan, Kansas 66506, USA
| | - Jeffrey Comer
- Nanotechnology Innovation Center of Kansas State, Department of Anatomy and Physiology, Kansas State University, Manhattan, Kansas 66506, USA
| | - Ricardo Garcia
- Instituto de Ciencia de Materiales de Madrid, CSIC, c/Sor Juana Inés de la Cruz 3, 28049 Madrid, Spain.
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Fukuma T. Improvements in fundamental performance of in-liquid frequency modulation atomic force microscopy. Microscopy (Oxf) 2020; 69:340-349. [PMID: 32780817 DOI: 10.1093/jmicro/dfaa045] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Accepted: 07/31/2020] [Indexed: 12/28/2022] Open
Abstract
In-liquid frequency modulation atomic force microscopy (FM-AFM) has been used for visualizing subnanometer-scale surface structures of minerals, organic thin films and biological systems. In addition, three-dimensional atomic force microscopy (3D-AFM) has been developed by combining it with a three-dimensional (3D) tip scanning method. This method enabled the visualization of 3D distributions of water (i.e. hydration structures) and flexible molecular chains at subnanometer-scale resolution. While these applications highlighted the unique capabilities of FM-AFM, its force resolution, speed and stability are not necessarily at a satisfactory level for practical applications. Recently, there have been significant advancements in these fundamental performances. The force resolution was dramatically improved by using a small cantilever, which enabled the imaging of a 3D hydration structure even in pure water and made it possible to directly compare experimental results with simulated ones. In addition, the improved force resolution allowed the enhancement of imaging speed without compromising spatial resolution. To achieve this goal, efforts have been made for improving bandwidth, resonance frequency and/or latency of various components, including a high-speed phase-locked loop (PLL) circuit. With these improvements, now atomic-resolution in-liquid FM-AFM imaging can be performed at ∼1 s/frame. Furthermore, a Si-coating method was found to improve stability and reproducibility of atomic-resolution imaging owing to formation of a stable hydration structure on a tip apex. These improvements have opened up new possibilities of atomic-scale studies on solid-liquid interfacial phenomena by in-liquid FM-AFM.
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Affiliation(s)
- Takeshi Fukuma
- Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
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