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Shinde SD, Kulkarni N, Sahu B. Synthesis and Investigation of Backbone Modified Squaramide Dipeptide Self-Assembly. ACS APPLIED BIO MATERIALS 2023; 6:507-518. [PMID: 36716238 DOI: 10.1021/acsabm.2c00803] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
Dipeptides are minimalistic peptide building blocks that form well ordered structures through molecular self-assembly. The driving forces involved are cooperative noncovalent interactions such as π-π stacking, hydrogen bonding, and ionic as well as hydrophobic interactions. One of the most intriguing self-assembled motifs that has been extensively explored as a low molecular weight hydrogel for drug delivery, tissue engineering, imaging and techtonics, etc. is Phe-Phe (FF). The backbone of the dipeptide is very crucial for extending secondary structures in self-assembly, and any subtle change in the backbone drastically affect the molecular recognitions. The squaramide (SQ) motif has the unique advantage of hydrogen bonding which can promote the self-assembly process. In this work we have integrated the SQ unit into the dipeptide FF backbone to achieve molecular self-assembly. The resulting carbamate protected backbone modified dipeptide (BocFSAF-OH, 10) has exhibited molecular self-assembly with a fibrilar network. It formed a stable hydrogel (with CAC of 0.024 ± 0.0098 wt %) via the solvent switch method and was found to possess excellent enzymatic stability. The dipeptide and the resulting hydrogel were found to be cytocompatible. When integrated with a polysaccharide based biopolymer, e.g. sodium alginate, the resulting matrix exhibited strong hydrogel character. Therefore, the dipeptide hydrogel of 10 may find its applications in a variety of fields including drug delivery and tissue engineering.
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Affiliation(s)
- Suchita Dattatray Shinde
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research (NIPER), Ahmedabad, Gujarat 380054, India
| | - Neeraj Kulkarni
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research (NIPER), Ahmedabad, Gujarat 380054, India
| | - Bichismita Sahu
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research (NIPER), Ahmedabad, Gujarat 380054, India
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Squaramide-Naphthalimide Conjugates – Exploiting Self-Aggregation Effects in Acetate Recognition. RESULTS IN CHEMISTRY 2022. [DOI: 10.1016/j.rechem.2022.100652] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
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Bhavya P, Soundarajan K, Malecki JG, Mohan Das T. Sugar-Based Phase-Selective Supramolecular Self-Assembly System for Dye Removal and Selective Detection of Cu 2+ Ions. ACS OMEGA 2022; 7:39310-39324. [PMID: 36340083 PMCID: PMC9631723 DOI: 10.1021/acsomega.2c05466] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/25/2022] [Accepted: 10/06/2022] [Indexed: 06/16/2023]
Abstract
Simple, effective, and eco-friendly sugar-based phase-selective gelators were synthesized at a low cost. They showed high gelling ability toward a wide range of solvents at lower concentrations (minimum gelation concentration ∼0.3%). Preliminary tests reveal that these low molecular weight organogelators can immediately and phase-selectively gel benzene, toluene, petrol, and kerosene in water at room temperature. We also identified G13 in toluene as the good gelator, and the corresponding organogel proficiently removes water-soluble dyes from their concentrated aqueous solutions. This efficient removal of toxic organic solvents and dyes from water suggests promising applications in removing organic substances from contaminated water resources. The thermoreversible gel exhibits effective rechargeability up to five cycles of burning and gelation, which imply the flame stability of the gel. Interestingly, these compounds had a high detection ability toward Cu2+ ions with a state change from gel to the solution. The physical justification for gelation mechanisms and the molecular interaction with metal ions were further confirmed by computational studies.
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Affiliation(s)
- Panichiyil
Valiyaveetil Bhavya
- Department
of Chemistry, School of Basic and Applied Sciences, Central University of Tamil Nadu (CUTN), Thiruvarur 610 005, India
| | - Kamalakannan Soundarajan
- Department
of Chemistry, School of Basic and Applied Sciences, Central University of Tamil Nadu (CUTN), Thiruvarur 610 005, India
| | - Jan Grzegorz Malecki
- Institute
of Chemistry, University of Silesia, Ninth Szkolna Street, 40-006 Katowice, Poland
| | - Thangamuthu Mohan Das
- Department
of Chemistry, School of Basic and Applied Sciences, Central University of Tamil Nadu (CUTN), Thiruvarur 610 005, India
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Synthesis of low-molecular-weight gel with tunable gel-sol transition temperature for thermo-sensitive drug controlled release. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Biswakarma D, Dey N, Bhattacharya S. Molecular design of amphiphiles for Microenvironment-Sensitive kinetically controlled gelation and their utility in probing alcohol contents. J Colloid Interface Sci 2022; 615:335-345. [DOI: 10.1016/j.jcis.2021.12.060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2021] [Revised: 12/04/2021] [Accepted: 12/09/2021] [Indexed: 11/26/2022]
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Kumawat LK, Wynne C, Cappello E, Fisher P, Brennan LE, Strofaldi A, McManus JJ, Hawes CS, Jolliffe KA, Gunnlaugsson T, Elmes RBP. Squaramide-Based Self-Associating Amphiphiles for Anion Recognition. Chempluschem 2021; 86:1058-1068. [PMID: 34351081 PMCID: PMC8456826 DOI: 10.1002/cplu.202100275] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Revised: 07/08/2021] [Indexed: 12/03/2022]
Abstract
The synthesis and characterisation of two novel self-assembled amphiphiles (SSAs) SQS-1 and SQS-2 are reported. Both compounds, based on the squaramide motif, were fully soluble in a range of solvents and were shown to undergo self-assembly through a range of physical techniques. Self-assembly was shown to favour the formation of crystalline domains on the nanoscale but also fibrillar film formation, as suggested by SEM analysis. Moreover, both SQS-1 and SQS-2 were capable of anion recognition in DMSO solution as demonstrated using 1 H NMR and UV/Vis absorption spectroscopy, but displayed lower binding affinities for various anions when compared against other squaramide based receptors. In more competitive solvent mixtures SQS-1 gave rise to a colourimetric response in the presence of HPO42- that was clearly visible to the naked eye. We anticipate that the observed response is due to the basic nature of the HPO42- anion when compared against other biologically relevant anions.
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Affiliation(s)
- Lokesh K. Kumawat
- Department of ChemistryMaynooth UniversityNational University of IrelandMaynoothCo. KildareIreland
| | - Conor Wynne
- Department of ChemistryMaynooth UniversityNational University of IrelandMaynoothCo. KildareIreland
- Synthesis and Solid State Pharmaceutical Centre (SSPC)Ireland
| | - Emanuele Cappello
- School of ChemistryTrinity Biomedical Sciences Institute (TBSI)Trinity College DublinThe University of DublinDublin 2Ireland
| | - Peter Fisher
- Department of ChemistryMaynooth UniversityNational University of IrelandMaynoothCo. KildareIreland
| | - Luke E. Brennan
- Department of ChemistryMaynooth UniversityNational University of IrelandMaynoothCo. KildareIreland
| | - Alessandro Strofaldi
- Department of ChemistryMaynooth UniversityNational University of IrelandMaynoothCo. KildareIreland
| | - Jennifer J. McManus
- Department of ChemistryMaynooth UniversityNational University of IrelandMaynoothCo. KildareIreland
- HH Wills Physics LaboratoryUniversity of BristolTyndall AvenueBristolBS8 1TLUnited Kingdom
- Synthesis and Solid State Pharmaceutical Centre (SSPC)Ireland
| | - Chris S. Hawes
- School of Chemical and Physical SciencesKeele UniversityKeeleST5 5BGUnited Kingdom
| | | | - Thorfinnur Gunnlaugsson
- School of ChemistryTrinity Biomedical Sciences Institute (TBSI)Trinity College DublinThe University of DublinDublin 2Ireland
- Synthesis and Solid State Pharmaceutical Centre (SSPC)Ireland
| | - Robert B. P. Elmes
- Department of ChemistryMaynooth UniversityNational University of IrelandMaynoothCo. KildareIreland
- Kathleen Lonsdale Institute for Human Health ResearchMaynooth UniversityMaynoothCo. KildareIreland
- Synthesis and Solid State Pharmaceutical Centre (SSPC)Ireland
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Liu T, den Berk L, Wondergem JAJ, Tong C, Kwakernaak MC, Braak BT, Heinrich D, Water B, Kieltyka RE. Squaramide-Based Supramolecular Materials Drive HepG2 Spheroid Differentiation. Adv Healthc Mater 2021; 10:e2001903. [PMID: 33929772 DOI: 10.1002/adhm.202001903] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2020] [Revised: 03/19/2021] [Indexed: 12/12/2022]
Abstract
A major challenge in the use of HepG2 cell culture models for drug toxicity screening is their lack of maturity in 2D culture. 3D culture in Matrigel promotes the formation of spheroids that express liver-relevant markers, yet they still lack various primary hepatocyte functions. Therefore, alternative matrices where chemical composition and materials properties are controlled to steer maturation of HepG2 spheroids remain desired. Herein, a modular approach is taken based on a fully synthetic and minimalistic supramolecular matrix based on squaramide synthons outfitted with a cell-adhesive peptide, RGD for 3D HepG2 spheroid culture. Co-assemblies of RGD-functionalized squaramide-based and native monomers resulted in soft and self-recovering supramolecular hydrogels with a tunable RGD concentration. HepG2 spheroids are self-assembled and grown (≈150 µm) within the supramolecular hydrogels with high cell viability and differentiation over 21 days of culture. Importantly, significantly higher mRNA and protein expression levels of phase I and II metabolic enzymes, drug transporters, and liver markers are found for the squaramide hydrogels in comparison to Matrigel. Overall, the fully synthetic squaramide hydrogels are proven to be synthetically accessible and effective for HepG2 differentiation showcasing the potential of this supramolecular matrix to rival and replace naturally-derived materials classically used in high-throughput toxicity screening.
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Affiliation(s)
- Tingxian Liu
- Department of Supramolecular and Biomaterials Chemistry Leiden Institute of Chemistry Leiden University P.O. Box 9502 Leiden 2300 RA Netherlands
| | - Linda den Berk
- Division of Drug Discovery and Safety Leiden Academic Centre for Drug Research Leiden University P.O. Box 9502 Leiden 2300 RA Netherlands
| | - Joeri A. J. Wondergem
- Department of Physics Huygens‐Kamerlingh Onnes Laboratory Leiden University Leiden 2300 RA Netherlands
- Fraunhofer Institute for Silicate Research ISC Neunerplatz 2 Würzburg 97082 Germany
| | - Ciqing Tong
- Department of Supramolecular and Biomaterials Chemistry Leiden Institute of Chemistry Leiden University P.O. Box 9502 Leiden 2300 RA Netherlands
| | - Markus C. Kwakernaak
- Department of Supramolecular and Biomaterials Chemistry Leiden Institute of Chemistry Leiden University P.O. Box 9502 Leiden 2300 RA Netherlands
| | - Bas ter Braak
- Division of Drug Discovery and Safety Leiden Academic Centre for Drug Research Leiden University P.O. Box 9502 Leiden 2300 RA Netherlands
| | - Doris Heinrich
- Department of Physics Huygens‐Kamerlingh Onnes Laboratory Leiden University Leiden 2300 RA Netherlands
- Fraunhofer Institute for Silicate Research ISC Neunerplatz 2 Würzburg 97082 Germany
| | - Bob Water
- Division of Drug Discovery and Safety Leiden Academic Centre for Drug Research Leiden University P.O. Box 9502 Leiden 2300 RA Netherlands
| | - Roxanne E. Kieltyka
- Department of Supramolecular and Biomaterials Chemistry Leiden Institute of Chemistry Leiden University P.O. Box 9502 Leiden 2300 RA Netherlands
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Picci G, Milia J, Aragoni MC, Arca M, Coles SJ, Garau A, Lippolis V, Montis R, Orton JB, Caltagirone C. Switching-On Fluorescence by Copper (II) and Basic Anions: A Case Study with a Pyrene-Functionalized Squaramide. Molecules 2021; 26:molecules26051301. [PMID: 33670937 PMCID: PMC7957675 DOI: 10.3390/molecules26051301] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2021] [Revised: 02/16/2021] [Accepted: 02/22/2021] [Indexed: 12/12/2022] Open
Abstract
The new symmetric acyclic N,N’-bis(1-pyrenyl) squaramide (H2L) functionalized with the pyrene moiety as a fluorogenic fragment has been designed and its ability to selectively detect specific anions and metals investigated. H2L selectively binds Cl− both in solution (DMSO 0.5% H2O and MeCN) and in the solid state, and allows to selectively detect Cu2+ in MeCN with the formation of a 2:1 metal-receptor complex, with a green intense emission appreciable by naked eye under the UV lamp. The H2L copper complex preserves its emission properties in the presence of Cl−. The addition of basic anions (OH−, CN−, and F−) up to 10 equivalents caused the deprotonation of the squaramide NHs and a dramatic change of the emission properties of the H2L copper complex.
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Affiliation(s)
- Giacomo Picci
- Dipartimento di Scienze Chimiche e Geologiche, Università degli Studi di Cagliari, S.S. 554 bivio per Sestu, 09042 Monserrato, Cagliari, Italy; (J.M.); (M.C.A.); (M.A.); (A.G.); (V.L.)
- Correspondence: (G.P.); (C.C.); Tel.: +39-070-675-4452 (C.C.)
| | - Jessica Milia
- Dipartimento di Scienze Chimiche e Geologiche, Università degli Studi di Cagliari, S.S. 554 bivio per Sestu, 09042 Monserrato, Cagliari, Italy; (J.M.); (M.C.A.); (M.A.); (A.G.); (V.L.)
| | - Maria Carla Aragoni
- Dipartimento di Scienze Chimiche e Geologiche, Università degli Studi di Cagliari, S.S. 554 bivio per Sestu, 09042 Monserrato, Cagliari, Italy; (J.M.); (M.C.A.); (M.A.); (A.G.); (V.L.)
| | - Massimiliano Arca
- Dipartimento di Scienze Chimiche e Geologiche, Università degli Studi di Cagliari, S.S. 554 bivio per Sestu, 09042 Monserrato, Cagliari, Italy; (J.M.); (M.C.A.); (M.A.); (A.G.); (V.L.)
| | - Simon J. Coles
- National Crystallography Service, Department of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, UK; (S.J.C.); (J.B.O.)
| | - Alessandra Garau
- Dipartimento di Scienze Chimiche e Geologiche, Università degli Studi di Cagliari, S.S. 554 bivio per Sestu, 09042 Monserrato, Cagliari, Italy; (J.M.); (M.C.A.); (M.A.); (A.G.); (V.L.)
| | - Vito Lippolis
- Dipartimento di Scienze Chimiche e Geologiche, Università degli Studi di Cagliari, S.S. 554 bivio per Sestu, 09042 Monserrato, Cagliari, Italy; (J.M.); (M.C.A.); (M.A.); (A.G.); (V.L.)
| | - Riccardo Montis
- Department of Chemical Engineering and Analytical Science, The University of Manchester, Oxford Road, Manchester M13 9PL, UK;
| | - James B. Orton
- National Crystallography Service, Department of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, UK; (S.J.C.); (J.B.O.)
| | - Claudia Caltagirone
- Dipartimento di Scienze Chimiche e Geologiche, Università degli Studi di Cagliari, S.S. 554 bivio per Sestu, 09042 Monserrato, Cagliari, Italy; (J.M.); (M.C.A.); (M.A.); (A.G.); (V.L.)
- Correspondence: (G.P.); (C.C.); Tel.: +39-070-675-4452 (C.C.)
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Morris J, Bietsch J, Bashaw K, Wang G. Recently Developed Carbohydrate Based Gelators and Their Applications. Gels 2021; 7:24. [PMID: 33652820 PMCID: PMC8006029 DOI: 10.3390/gels7010024] [Citation(s) in RCA: 36] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2021] [Revised: 02/13/2021] [Accepted: 02/22/2021] [Indexed: 12/11/2022] Open
Abstract
Carbohydrate based low molecular weight gelators have been an intense subject of study over the past decade. The self-assembling systems built from natural products have high significance as biocompatible materials and renewable resources. The versatile structures available from naturally existing monosaccharides have enriched the molecular libraries that can be used for the construction of gelators. The bottom-up strategy in designing low molecular weight gelators (LMWGs) for a variety of applications has been adopted by many researchers. Rational design, along with some serendipitous discoveries, has resulted in multiple classes of molecular gelators. This review covers the literature from 2017-2020 on monosaccharide based gelators, including common hexoses, pentoses, along with some disaccharides and their derivatives. The structure-based design and structure to gelation property relationships are reviewed first, followed by stimuli-responsive gelators. The last section focuses on the applications of the sugar based gelators, including their utilization in environmental remediation, ion sensing, catalysis, drug delivery and 3D-printing. We will also review the available LMWGs and their structure correlations to the desired properties for different applications. This review aims at elucidating the design principles and structural features that are pertinent to various applications and hope to provide certain guidelines for researchers that are working at the interface of chemistry, biochemistry, and materials science.
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Affiliation(s)
| | | | | | - Guijun Wang
- Department of Chemistry and Biochemistry, Old Dominion University, Norfolk, VA 23529, USA; (J.M.); (J.B.); (K.B.)
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Martin H, Somers T, Dwyer M, Robson R, Pfeffer FM, Bjornsson R, Krämer T, Kavanagh K, Velasco-Torrijos T. Scaffold diversity for enhanced activity of glycosylated inhibitors of fungal adhesion. RSC Med Chem 2020; 11:1386-1401. [PMID: 34095846 DOI: 10.1039/d0md00224k] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Accepted: 08/11/2020] [Indexed: 12/20/2022] Open
Abstract
Candida albicans is one of the most prevalent fungal pathogens involved in hospital acquired infections. It binds to glycans at the surface of epithelial cells and initiates infection. This process can be blocked by synthetic carbohydrates that mimic the structure of cell surface glycans. Herein we report the evaluation of a series of divalent glycosides featuring aromatic (benzene, squaramide) and bicyclic aliphatic (norbornene) scaffolds, with the latter being the first examples of their kind as small molecule anti-adhesion glycoconjugates. Galactosides 1 and 6, built on an aromatic core, were most efficient inhibitors of adhesion of C. albicans to buccal epithelial cells, displacing up to 36% and 48%, respectively, of yeast already attached to epithelial cells at 138 μM. Remarkably, cis-endo-norbornene 21 performed comparably to benzene-core derivatives. Conformational analysis reveals a preference for compounds 1 and 21 to adopt folded conformations. These results highlight the potential of norbornenes as a new class of aliphatic scaffolds for the synthesis of anti-adhesion compounds.
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Affiliation(s)
- Harlei Martin
- Department of Chemistry, Maynooth University Maynooth Co. Kildare Ireland
| | - Tara Somers
- Department of Biology, Maynooth University Maynooth Co. Kildare Ireland
| | - Mathew Dwyer
- Department of Biology, Maynooth University Maynooth Co. Kildare Ireland
| | - Ryan Robson
- School of Life and Environmental Sciences, Deakin University Geelong Victoria 3217 Australia
| | - Frederick M Pfeffer
- School of Life and Environmental Sciences, Deakin University Geelong Victoria 3217 Australia
| | - Ragnar Bjornsson
- Department of Inorganic Spectroscopy, Max Planck Institute for Chemical Energy Conversion Stiftstrasse 34-36 45470 Mülheim an der Ruhr Germany
| | - Tobias Krämer
- Department of Chemistry, Maynooth University Maynooth Co. Kildare Ireland .,The Hamilton Institute, Maynooth University Maynooth Co. Kildare Ireland
| | - Kevin Kavanagh
- Department of Biology, Maynooth University Maynooth Co. Kildare Ireland.,The Kathleen Lonsdale Institute for Human Health Research, Maynooth University Maynooth Co. Kildare Ireland
| | - Trinidad Velasco-Torrijos
- Department of Chemistry, Maynooth University Maynooth Co. Kildare Ireland .,The Kathleen Lonsdale Institute for Human Health Research, Maynooth University Maynooth Co. Kildare Ireland
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