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Lee M, Jeon Y, Kim S, Jung I, Kang S, Jeong SH, Park J. Unravelling complex mechanisms in materials processes with cryogenic electron microscopy. Chem Sci 2025; 16:1017-1035. [PMID: 39697416 PMCID: PMC11651391 DOI: 10.1039/d4sc05188b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2024] [Accepted: 12/02/2024] [Indexed: 12/20/2024] Open
Abstract
Investigating nanoscale structural variations, including heterogeneities, defects, and interfacial characteristics, is crucial for gaining insight into material properties and functionalities. Cryogenic electron microscopy (cryo-EM) is developing as a powerful tool in materials science particularly for non-invasively understanding nanoscale structures of materials. These advancements bring us closer to the ultimate goal of correlating nanoscale structures to bulk functional outcomes. However, while understanding mechanisms from structural information requires analysis that closely mimics operation conditions, current challenges in cryo-EM imaging and sample preparation hinder the extraction of detailed mechanistic insights. In this Perspective, we discuss the innovative strategies and the potential for using cryo-EM for revealing mechanisms in materials science, with examples from high-resolution imaging, correlative elemental analysis, and three-dimensional and time-resolved analysis. Furthermore, we propose improvements in cryo-sample preparation, optimized instrumentation setup for imaging, and data interpretation techniques to enable the wider use of cryo-EM and achieve deeper context into materials to bridge structural observations with mechanistic understanding.
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Affiliation(s)
- Minyoung Lee
- Department of Chemical and Biological Engineering, and Institute of Chemical Processes, Seoul National University Seoul 08826 Republic of Korea
- Center for Nanoparticle Research, Institute for Basic Science (IBS) Seoul 08826 Republic of Korea
| | - Yonggoon Jeon
- Department of Chemical and Biological Engineering, and Institute of Chemical Processes, Seoul National University Seoul 08826 Republic of Korea
- Center for Nanoparticle Research, Institute for Basic Science (IBS) Seoul 08826 Republic of Korea
- Department of Physics and Chemistry, Korea Military Academy (KMA) Seoul 01805 Republic of Korea
| | - Sungin Kim
- Department of Chemical and Biological Engineering, and Institute of Chemical Processes, Seoul National University Seoul 08826 Republic of Korea
- Center for Nanoparticle Research, Institute for Basic Science (IBS) Seoul 08826 Republic of Korea
- Department of Chemistry and Chemical Biology, Cornell University Ithaca NY 14853 USA
| | - Ihnkyung Jung
- Department of Chemical and Biological Engineering, and Institute of Chemical Processes, Seoul National University Seoul 08826 Republic of Korea
- Center for Nanoparticle Research, Institute for Basic Science (IBS) Seoul 08826 Republic of Korea
| | - Sungsu Kang
- Department of Chemical and Biological Engineering, and Institute of Chemical Processes, Seoul National University Seoul 08826 Republic of Korea
- Center for Nanoparticle Research, Institute for Basic Science (IBS) Seoul 08826 Republic of Korea
- Department of Chemistry, University of Chicago Chicago IL 60637 USA
| | - Seol-Ha Jeong
- Department of Chemical and Biological Engineering, and Institute of Chemical Processes, Seoul National University Seoul 08826 Republic of Korea
| | - Jungwon Park
- Department of Chemical and Biological Engineering, and Institute of Chemical Processes, Seoul National University Seoul 08826 Republic of Korea
- Center for Nanoparticle Research, Institute for Basic Science (IBS) Seoul 08826 Republic of Korea
- Institute of Engineering Research, Seoul National University Seoul 08826 Republic of Korea
- Advanced Institute of Convergence Technology, Seoul National University Suwon 16229 Republic of Korea
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Fan L, Shen Y, Lou D, Gu N. Progress in the Computer-Aided Analysis in Multiple Aspects of Nanocatalysis Research. Adv Healthc Mater 2024:e2401576. [PMID: 38936401 DOI: 10.1002/adhm.202401576] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2024] [Revised: 06/08/2024] [Indexed: 06/29/2024]
Abstract
Making the utmost of the differences and advantages of multiple disciplines, interdisciplinary integration breaks the science boundaries and accelerates the progress in mutual quests. As an organic connection of material science, enzymology, and biomedicine, nanozyme-related research is further supported by computer technology, which injects in new vitality, and contributes to in-depth understanding, unprecedented insights, and broadened application possibilities. Utilizing computer-aided first-principles method, high-speed and high-throughput mathematic, physic, and chemic models are introduced to perform atomic-level kinetic analysis for nanocatalytic reaction process, and theoretically illustrate the underlying nanozymetic mechanism and structure-function relationship. On this basis, nanozymes with desirable properties can be designed and demand-oriented synthesized without repeated trial-and-error experiments. Besides that, computational analysis and device also play an indispensable role in nanozyme-based detecting methods to realize automatic readouts with improved accuracy and reproducibility. Here, this work focuses on the crossing of nanocatalysis research and computational technology, to inspire the research in computer-aided analysis in nanozyme field to a greater extent.
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Affiliation(s)
- Lin Fan
- Medical School of Nanjing University, Nanjing, 210093, P. R. China
- School of Integrated Circuit Science and Engineering (Industry-Education Integration School), Nanjing University of Posts and Telecommunications, Nanjing, 210023, P. R. China
| | - Yilei Shen
- School of Integrated Circuit Science and Engineering (Industry-Education Integration School), Nanjing University of Posts and Telecommunications, Nanjing, 210023, P. R. China
| | - Doudou Lou
- Nanjing Institute for Food and Drug Control, Nanjing, 211198, P. R. China
| | - Ning Gu
- Medical School of Nanjing University, Nanjing, 210093, P. R. China
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Kim A, Akkunuri K, Qian C, Yao L, Sun K, Chen Z, Vo T, Chen Q. Direct Imaging of "Patch-Clasping" and Relaxation in Robust and Flexible Nanoparticle Assemblies. ACS NANO 2024; 18:939-950. [PMID: 38146750 DOI: 10.1021/acsnano.3c09710] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2023]
Abstract
Polymer patching on inorganic nanoparticles (NPs) enables multifunctionality and directed self-assembly into nonclosely packed optical and mechanical metamaterials. However, experimental demonstration of such assemblies has been scant due to challenges in leveraging patch-induced NP-NP attractions and understanding NP self-assembly dynamics. Here we use low-dose liquid-phase transmission electron microscopy to visualize the dynamic behaviors of tip-patched triangular nanoprisms upon patch-clasping, where polymer patches interpenetrate to form cohesive bonds that connect NPs. Notably, these bonds are longitudinally robust but rotationally flexible. Patch-clasping is found to allow highly selective tip-tip assembly, interconversion between dimeric bowtie and sawtooth configurations, and collective structural relaxation of NP networks. The integration of single particle tracking, polymer physics theory, and molecular dynamics simulation reveals the macromolecular origin of patch-clasping-induced NP dynamics. Our experiment-computation integration can aid the design of stimuli-responsive nanomaterials, such as topological metamaterials for chiral sensors, waveguides, and nanoantennas.
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Affiliation(s)
- Ahyoung Kim
- Department of Materials Science and Engineering, University of Illinois, Urbana, Illinois 61801, United States
| | - Kireeti Akkunuri
- Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Chang Qian
- Department of Materials Science and Engineering, University of Illinois, Urbana, Illinois 61801, United States
| | - Lehan Yao
- Department of Materials Science and Engineering, University of Illinois, Urbana, Illinois 61801, United States
| | - Kai Sun
- Department of Physics, University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Zi Chen
- Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, United States
| | - Thi Vo
- Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Qian Chen
- Department of Materials Science and Engineering, University of Illinois, Urbana, Illinois 61801, United States
- Department of Chemistry, Beckman Institute for Advanced Science and Technology, and Materials Research Laboratory, University of Illinois, Urbana, Illinois 61801, United States
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Chee SW, Lunkenbein T, Schlögl R, Roldán Cuenya B. Operando Electron Microscopy of Catalysts: The Missing Cornerstone in Heterogeneous Catalysis Research? Chem Rev 2023; 123:13374-13418. [PMID: 37967448 PMCID: PMC10722467 DOI: 10.1021/acs.chemrev.3c00352] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Revised: 10/14/2023] [Accepted: 10/20/2023] [Indexed: 11/17/2023]
Abstract
Heterogeneous catalysis in thermal gas-phase and electrochemical liquid-phase chemical conversion plays an important role in our modern energy landscape. However, many of the structural features that drive efficient chemical energy conversion are still unknown. These features are, in general, highly distinct on the local scale and lack translational symmetry, and thus, they are difficult to capture without the required spatial and temporal resolution. Correlating these structures to their function will, conversely, allow us to disentangle irrelevant and relevant features, explore the entanglement of different local structures, and provide us with the necessary understanding to tailor novel catalyst systems with improved productivity. This critical review provides a summary of the still immature field of operando electron microscopy for thermal gas-phase and electrochemical liquid-phase reactions. It focuses on the complexity of investigating catalytic reactions and catalysts, progress in the field, and analysis. The forthcoming advances are discussed in view of correlative techniques, artificial intelligence in analysis, and novel reactor designs.
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Affiliation(s)
- See Wee Chee
- Department
of Interface Science, Fritz-Haber Institute
of the Max-Planck Society, 14195 Berlin, Germany
| | - Thomas Lunkenbein
- Department
of Inorganic Chemistry, Fritz-Haber Institute
of the Max-Planck Society, 14195 Berlin, Germany
| | - Robert Schlögl
- Department
of Interface Science, Fritz-Haber Institute
of the Max-Planck Society, 14195 Berlin, Germany
| | - Beatriz Roldán Cuenya
- Department
of Interface Science, Fritz-Haber Institute
of the Max-Planck Society, 14195 Berlin, Germany
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Xu Z, Ou Z. Direct Imaging of the Kinetic Crystallization Pathway: Simulation and Liquid-Phase Transmission Electron Microscopy Observations. MATERIALS (BASEL, SWITZERLAND) 2023; 16:2026. [PMID: 36903141 PMCID: PMC10004038 DOI: 10.3390/ma16052026] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Revised: 02/26/2023] [Accepted: 02/27/2023] [Indexed: 06/18/2023]
Abstract
The crystallization of materials from a suspension determines the structure and function of the final product, and numerous pieces of evidence have pointed out that the classical crystallization pathway may not capture the whole picture of the crystallization pathways. However, visualizing the initial nucleation and further growth of a crystal at the nanoscale has been challenging due to the difficulties of imaging individual atoms or nanoparticles during the crystallization process in solution. Recent progress in nanoscale microscopy had tackled this problem by monitoring the dynamic structural evolution of crystallization in a liquid environment. In this review, we summarized several crystallization pathways captured by the liquid-phase transmission electron microscopy technique and compared the observations with computer simulation. Apart from the classical nucleation pathway, we highlight three nonclassical pathways that are both observed in experiments and computer simulations: formation of an amorphous cluster below the critical nucleus size, nucleation of the crystalline phase from an amorphous intermediate, and transition between multiple crystalline structures before achieving the final product. Among these pathways, we also highlight the similarities and differences between the experimental results of the crystallization of single nanocrystals from atoms and the assembly of a colloidal superlattice from a large number of colloidal nanoparticles. By comparing the experimental results with computer simulations, we point out the importance of theory and simulation in developing a mechanistic approach to facilitate the understanding of the crystallization pathway in experimental systems. We also discuss the challenges and future perspectives for investigating the crystallization pathways at the nanoscale with the development of in situ nanoscale imaging techniques and potential applications to the understanding of biomineralization and protein self-assembly.
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Affiliation(s)
- Zhangying Xu
- Qian Weichang College, Shanghai University, Shanghai 200444, China
| | - Zihao Ou
- Department of Materials Science and Engineering, Stanford University, Stanford, CA 94305, USA
- Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA 94305, USA
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