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Shen Z, Li X, Zeng Y, Zhang X. Influence of Noncovalent Interaction on the Nucleophilicity and Electrophilicity of Metal Centers in [M II(S 2CNEt 2) 2] (M = Ni, Pd, Pt). J Phys Chem A 2024; 128:10796-10807. [PMID: 39652712 DOI: 10.1021/acs.jpca.4c05706] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2024]
Abstract
A systematic theoretical study was performed on the electrophilic and nucleophilic properties of Group 10 square-planar metal compounds [MII(S2CNEt2)2] (M = Ni 1, Pd 2, and Pt 3) and their complexes. The nucleophilic metal center and coordinated sulfur atom in [M(S2CNEt2)2] facilitate the formation of metal-involving and conventional noncovalent bonds. The presence a heavier metal center results in a more negative electrostatic potential and a larger nucleophilicity, which in turn leads to the formation of stronger metal-involving noncovalent bonds than those formed by a lighter metal center. The NiII center was observed to display electrophilic-nucleophilic dualism with regard to noncovalent interactions, forming both a metal-involving halogen bond (Ni···I) with iodine chloride (ICl) and a semicoordination bond (Ni···N) with N-bases. The nucleophilicity and electrophilicity of the NiII center are enhanced in the ternary complexes LB···1···XCl (X = H, I; LB = NH3, NHCH2, pyridine) due to the push-pull mechanism. The N···Ni semicoordination bond exerts a push effect on the dz2 orbital of the NiII center, while the Ni···X noncovalent bond provides a symbiotic pull effect on this orbital. Furthermore, the formation of metal-involving noncovalent bonds may enhance the electrophilic ability of the PdII and PtII center, resulting in the formation of stable ternary complexes Py···2/3···XCl (X = H, I), which are characterized by M···N and M···X interactions.
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Affiliation(s)
- Zixuan Shen
- College of Chemistry and Materials Science, Hebei Normal University, Shijiazhuang 050024, China
| | - Xiaoyan Li
- College of Chemistry and Materials Science, Hebei Normal University, Shijiazhuang 050024, China
- Hebei Key Laboratory of Inorganic Nano-materials, Hebei Normal University, Shijiazhuang 050024, China
| | - Yanli Zeng
- College of Chemistry and Materials Science, Hebei Normal University, Shijiazhuang 050024, China
- Hebei Key Laboratory of Inorganic Nano-materials, Hebei Normal University, Shijiazhuang 050024, China
| | - Xueying Zhang
- College of Chemistry and Materials Science, Hebei Normal University, Shijiazhuang 050024, China
- Hebei Key Laboratory of Inorganic Nano-materials, Hebei Normal University, Shijiazhuang 050024, China
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Siddiqui R, Burguera S, de Las Nieves Piña M, Dhamija S, Titi HM, Frontera A, Bauzá A, Patra R. From Coordination to π-Hole Chemistry of Transition Metals: Metalloporphyrins as a Case of Study. Angew Chem Int Ed Engl 2024; 63:e202409963. [PMID: 38934220 DOI: 10.1002/anie.202409963] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2024] [Revised: 06/26/2024] [Accepted: 06/26/2024] [Indexed: 06/28/2024]
Abstract
Herein we have evidenced the formation of favorable π-hole Br⋅⋅⋅metal noncovalent interactions (NCIs) involving elements from groups 9, 11 and 12. More in detail, M (M=Co2+, Ni2+, Cu2+ and Zn2+) containing porphyrins have been synthesized and their supramolecular assemblies structurally characterized by means of single crystal X-ray diffraction and Hirshfeld surface analyses, revealing the formation of directional Br⋅⋅⋅M contacts in addition to ancillary hydrogen bond and lone pair-π bonds. Computations at the PBE0-D3/def2-TZVP level of theory revealed the π-hole nature of the Br⋅⋅⋅M interaction. In addition, the physical nature of these NCIs was studied using Quantum Chemistry methodologies, providing evidence of π-hole Spodium and Regium bonds in Zn2+ and Cu2+ porphyrins, in addition to unveiling the presence of a π-hole for group 9 (Co2+). On the other hand, group 10 (Ni2+) acted as both electron donor and acceptor moiety without showing an electropositive π-hole. Owing to the underexplored potential of π-hole interactions in transition metal chemistry, we believe the results reported herein will be useful in supramolecular chemistry, organometallics, and solid-state chemistry by i) putting under the spotlight the π-hole chemistry involving first row transition metals and ii) unlocking a new tool to direct the self-assembly of metalloporphyrins.
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Affiliation(s)
- Rafia Siddiqui
- Amity Institute of Click Chemistry Research and Studies, Amity University, Noida, Uttar Pradesh, India
| | - Sergi Burguera
- Departament de Química, Universitat de les Illes Balears, Ctra. de Valldemossa km 7.5, 07122, Palma de Mallorca, Baleares, Spain
| | - María de Las Nieves Piña
- Departament de Química, Universitat de les Illes Balears, Ctra. de Valldemossa km 7.5, 07122, Palma de Mallorca, Baleares, Spain
| | - Swati Dhamija
- Amity Institute of Click Chemistry Research and Studies, Amity University, Noida, Uttar Pradesh, India
| | - Hatem M Titi
- Department of Chemistry, McGill University, 801 Sherbrooke St. West, Montreal, QCH3A0B8, Canada
| | - Antonio Frontera
- Departament de Química, Universitat de les Illes Balears, Ctra. de Valldemossa km 7.5, 07122, Palma de Mallorca, Baleares, Spain
| | - Antonio Bauzá
- Departament de Química, Universitat de les Illes Balears, Ctra. de Valldemossa km 7.5, 07122, Palma de Mallorca, Baleares, Spain
| | - Ranjan Patra
- Amity Institute of Click Chemistry Research and Studies, Amity University, Noida, Uttar Pradesh, India
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Zhang L, Shen Z, Zeng Y, Li X, Zhang X. Insight into the Metal-Involving Chalcogen Bond in the Pd II/Pt II-Based Complexes: Comparison with the Conventional Chalcogen Bond. J Phys Chem A 2024; 128:5567-5577. [PMID: 39003760 DOI: 10.1021/acs.jpca.4c02723] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/16/2024]
Abstract
The metal-involving Ch···M chalcogen bond and the conventional Ch···O chalcogen bond between ChX2 (Ch = Se, Te; X = CCH, CN) acting as a Lewis acid and M(acac)2 (M = Pd, Pt; Hacac = acetylacetone) acting as a Lewis base were studied by density functional theory calculations. It has been observed that the nucleophilicity of the PtII complexes is higher than that of the corresponding PdII complexes. As a result, the PtII complexes tend to exhibit a more negative interaction energy and larger orbital interaction. The strength of the chalcogen bond increases with the increase of the chalcogen atom and the electronegativity of the substituent on the Lewis acid and vice versa. The metal-involving chalcogen bond shows a typical weak closed-shell noncovalent interaction in the (HCC)2Ch···M(acac)2 complexes, while it exhibits a partially covalent nature in the (NC)2Ch···M(acac)2 complexes. The conventional Ch···O chalcogen bond displays the character of a weak noncovalent interaction, and its strength is generally weaker than that of metal-involving Ch···M interactions. It could be argued that the metal-involving chalcogen bond is primarily determined by the correlation term, whereas the conventional chalcogen bond is mainly governed by the electrostatic interaction.
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Affiliation(s)
- Lili Zhang
- College of Chemistry and Materials Science, Hebei Normal University, Shijiazhuang 050024, China
| | - Zixuan Shen
- College of Chemistry and Materials Science, Hebei Normal University, Shijiazhuang 050024, China
| | - Yanli Zeng
- College of Chemistry and Materials Science, Hebei Normal University, Shijiazhuang 050024, China
- Hebei Key Laboratory of Inorganic Nano-materials, Hebei Normal University, Shijiazhuang 050024, China
| | - Xiaoyan Li
- College of Chemistry and Materials Science, Hebei Normal University, Shijiazhuang 050024, China
- Hebei Key Laboratory of Inorganic Nano-materials, Hebei Normal University, Shijiazhuang 050024, China
| | - Xueying Zhang
- College of Chemistry and Materials Science, Hebei Normal University, Shijiazhuang 050024, China
- Hebei Key Laboratory of Inorganic Nano-materials, Hebei Normal University, Shijiazhuang 050024, China
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Grödler D, Burguera S, Frontera A, Strub E. Investigating Recurrent Matere Bonds in Pertechnetate Compounds. Chemistry 2024; 30:e202400100. [PMID: 38385852 DOI: 10.1002/chem.202400100] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Revised: 02/12/2024] [Accepted: 02/13/2024] [Indexed: 02/23/2024]
Abstract
In this manuscript we evaluate the X-ray structure of five new pertechnetate derivatives of general formula [M(H2O)4(TcO4)2], M=Mg, Co, Ni, Cu, Zn (compounds 1-5) and one perrhenate compound Zn(H2O)4(ReO4)2 (6). In these complexes the metal center exhibits an octahedral coordination with the pertechnetate units as axial ligands. All compounds exhibit the formation of directional Tc⋅⋅⋅O Matere bonds (MaBs) that propagate the [M(H2O)4(TcO4)2], into 1D supramolecular polymers in the solid state. Such 1D polymers are linked, generating 2D layers, by combining additional MaBs and hydrogen bonds (HBs). Such concurrent motifs have been analyzed theoretically, suggesting the noncovalent σ-hole nature of the MaBs. The interaction energies range from weak (~ -2 kcal/mol) for the MaBs to strong (~ -30 kcal/mol) for the MaB+HB assemblies, where HB dominates. In case of M=Zn, the corresponding perrhenate Zn(H2O)4(ReO4)2 complex, has been also synthesized for comparison purposes, resulting in the formation of an isostructural X-ray structure, corroborating the structure-directing role of Matere bonds.
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Affiliation(s)
- Dennis Grödler
- Department of Chemistry, Division of Nuclear Chemistry, University of Cologne, Zülpicher Str. 45, 50674, Cologne, Germany
| | - Sergi Burguera
- Departament de Química, Universitat de les Illes Balears, Crta. De Valldemossa km 7.5, 07122, Palma de Mallorca (Baleares), SPAIN
| | - Antonio Frontera
- Departament de Química, Universitat de les Illes Balears, Crta. De Valldemossa km 7.5, 07122, Palma de Mallorca (Baleares), SPAIN
| | - Erik Strub
- Department of Chemistry, Division of Nuclear Chemistry, University of Cologne, Zülpicher Str. 45, 50674, Cologne, Germany
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Baykov SV, Katlenok EA, Baykova SO, Semenov AV, Bokach NA, Boyarskiy VP. Conformation-Associated C··· dz2-Pt II Tetrel Bonding: The Case of Cyclometallated Platinum(II) Complex with 4-Cyanopyridyl Urea Ligand. Int J Mol Sci 2024; 25:4052. [PMID: 38612862 PMCID: PMC11012616 DOI: 10.3390/ijms25074052] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2024] [Revised: 03/30/2024] [Accepted: 04/03/2024] [Indexed: 04/14/2024] Open
Abstract
The nucleophilic addition of 3-(4-cyanopyridin-2-yl)-1,1-dimethylurea (1) to cis-[Pt(CNXyl)2Cl2] (2) gave a new cyclometallated compound 3. It was characterized by NMR spectroscopy (1H, 13C, 195Pt) and high-resolution mass spectrometry, as well as crystallized to obtain two crystalline forms (3 and 3·2MeCN), whose structures were determined by X-ray diffraction. In the crystalline structure of 3, two conformers (3A and 3B) were identified, while the structure 3·2MeCN had only one conformer 3A. The conformers differed by orientation of the N,N-dimethylcarbamoyl moiety relative to the metallacycle plane. In both crystals 3 and 3·2MeCN, the molecules of the Pt(II) complex are associated into supramolecular dimers, either {3A}2 or {3B}2, via stacking interactions between the planes of two metal centers, which are additionally supported by hydrogen bonding. The theoretical consideration, utilizing a number of computational approaches, demonstrates that the C···dz2(Pt) interaction makes a significant contribution in the total stacking forces in the geometrically optimized dimer [3A]2 and reveals the dz2(Pt)→π*(PyCN) charge transfer (CT). The presence of such CT process allowed for marking the C···Pt contact as a new example of a rare studied phenomenon, namely, tetrel bonding, in which the metal site acts as a Lewis base (an acceptor of noncovalent interaction).
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Affiliation(s)
- Sergey V. Baykov
- Institute of Chemistry, Saint Petersburg State University, 7/9 Universitetskaya Nab., Saint Petersburg 199034, Russia; (E.A.K.); (A.V.S.); (V.P.B.)
| | | | | | | | - Nadezhda A. Bokach
- Institute of Chemistry, Saint Petersburg State University, 7/9 Universitetskaya Nab., Saint Petersburg 199034, Russia; (E.A.K.); (A.V.S.); (V.P.B.)
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Liu WC, Gabbaï FP. Placing gold on a π +-surface: ligand design and impact on reactivity. Chem Sci 2023; 14:277-283. [PMID: 36687358 PMCID: PMC9811580 DOI: 10.1039/d2sc05574k] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2022] [Accepted: 11/21/2022] [Indexed: 11/24/2022] Open
Abstract
We describe a novel gold chloride complex supported by an ambiphilic phosphine/xanthylium ligand in which the AuCl moiety interacts with the π+ surface of the xanthylium unit as indicated by structural studies. Energy decomposition analyses carried out on a model system indicates the prevalence of non-covalent interactions in which the electrostatic and dispersion terms cumulatively dominate. The presence of these AuCl-π+ interactions correlates with the high catalytic activity of this complex in the cyclisation of 2-(phenylethynyl)phenylboronic acid, N-propargyl-t-butylamide, and 2-allyl-2-(2-propynyl)malonate. Comparison with the significantly less active acridinium and the 9-oxa-10-boraanthracene analogues reinforces this conclusion.
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Affiliation(s)
- Wei-Chun Liu
- Department of Chemistry, Texas A&M UniversityCollege StationTX 77843USA
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Blasi D, Nicolai V, Gomila RM, Mercandelli P, Frontera A, Carlucci L. Unprecedented {dz2-CuIIO4}···π-hole interactions: the case of a cocrystal of Cu(II) bis-β-diketonate complex with 1,4-diiodotetrafluoro-benzene. Chem Commun (Camb) 2022; 58:9524-9527. [DOI: 10.1039/d2cc03457c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Cocrystallization of bis[1-(4-pyridyl)butane-1,3-dionato]copper(II) (1) complex and 1,4-diiodoperfluorobenzene in the presence of pyridine yields to a 1:1 cocrystal where both the σ and π-holes of 1,4-diiodoperfluorobenzene play a role. The crystal...
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