1
|
Chen M, Dai S, Chen D, Chen H, Feng N, Zheng D. Unveiling the translational dynamics of lychee (Litchi chinesis Sonn.) in response to cold stress. BMC Genomics 2024; 25:686. [PMID: 38992605 PMCID: PMC11241792 DOI: 10.1186/s12864-024-10591-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Accepted: 07/03/2024] [Indexed: 07/13/2024] Open
Abstract
Cold stress poses a significant threat to the quality and productivity of lychee (Litchi chinensis Sonn.). While previous research has extensively explored the genomic and transcriptomic responses to cold stress in lychee, the translatome has not been thoroughly investigated. This study delves into the translatomic landscape of the 'Xiangjinfeng' cultivar under both control and low-temperature conditions using RNA sequencing and ribosome profiling. We uncovered a significant divergence between the transcriptomic and translatomic responses to cold exposure. Additionally, bioinformatics analyses underscored the crucial role of codon occupancy in lychee's cold tolerance mechanisms. Our findings reveal that the modulation of translation via codon occupancy is a vital strategy to abiotic stress. Specifically, the study identifies ribosome stalling, particularly at the E site AAU codon, as a key element of the translation machinery in lychee's response to cold stress. This work enhances our understanding of the molecular dynamics of lychee's reaction to cold stress and emphasizes the essential role of translational regulation in the plant's environmental adaptability.
Collapse
Affiliation(s)
- Mingming Chen
- College of Coastal Agricultural Sciences, Guangdong Ocean University, Zhanjiang, 524008, China.
- National Saline-Tolerant Rice Technology Innovation Center, South China, Zhanjiang, 524008, China.
- Shenzhen Institute of Guangdong Ocean University, Shenzhen, 518108, China.
| | - Shuangfeng Dai
- College of Coastal Agricultural Sciences, Guangdong Ocean University, Zhanjiang, 524008, China
- National Saline-Tolerant Rice Technology Innovation Center, South China, Zhanjiang, 524008, China
| | - Daming Chen
- College of Coastal Agricultural Sciences, Guangdong Ocean University, Zhanjiang, 524008, China
- National Saline-Tolerant Rice Technology Innovation Center, South China, Zhanjiang, 524008, China
| | - Haomin Chen
- College of Coastal Agricultural Sciences, Guangdong Ocean University, Zhanjiang, 524008, China
- National Saline-Tolerant Rice Technology Innovation Center, South China, Zhanjiang, 524008, China
| | - Naijie Feng
- College of Coastal Agricultural Sciences, Guangdong Ocean University, Zhanjiang, 524008, China.
- National Saline-Tolerant Rice Technology Innovation Center, South China, Zhanjiang, 524008, China.
- Shenzhen Institute of Guangdong Ocean University, Shenzhen, 518108, China.
| | - Dianfeng Zheng
- College of Coastal Agricultural Sciences, Guangdong Ocean University, Zhanjiang, 524008, China.
- National Saline-Tolerant Rice Technology Innovation Center, South China, Zhanjiang, 524008, China.
- Shenzhen Institute of Guangdong Ocean University, Shenzhen, 518108, China.
| |
Collapse
|
2
|
Huang H, Gu Q, Nie SM, Wang JD, Zhao H, Zhai BW, Zhang MY, Fu YJ. Untargeted metabolomics reveals the regulatory effect of geniposidic acid on lipid accumulation in HepG2 cells and Caenorhabditis elegans and validation in hyperlipidemic hamsters. PHYTOMEDICINE : INTERNATIONAL JOURNAL OF PHYTOTHERAPY AND PHYTOPHARMACOLOGY 2024; 125:155295. [PMID: 38277945 DOI: 10.1016/j.phymed.2023.155295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Revised: 12/08/2023] [Accepted: 12/16/2023] [Indexed: 01/28/2024]
Abstract
BACKGROUND Geniposidic acid (GPA) alleviates oxidative stress and inflammation in mice However, whether it can effectively regulate lipid accumulation and prevent hyperlipidemia requires further investigation. PURPOSE This study combined the untargeted metabolomics of cells and a Caenorhabditis elegans model to evaluate the anti-hyperlipidemic potential of GPA by modulating oxidative stress and regulating lipid metabolism. A golden hamster model of hyperlipidemia was used to further validate the lipid-lowering effect and mechanism of action of GPA. METHODS Chemical staining, immunofluorescence, and flow cytometry were performed to examine the effects of GPA on lipid accumulation and oxidative stress. Untargeted metabolomic analysis of cells and C. elegans was performed using ultra-performance liquid chromatography coupled with quadrupole electrostatic field Orbitrap high-resolution mass spectrometry (UPLC-Q-Orbitrap MS) to identify biomarkers altered by GPA action, analyze the affected metabolic pathways, and validate the mechanisms by which GPA regulates lipid metabolism and oxidative stress. A golden hamster model of hyperlipidemia was established to test the lipid-lowering effects of GPA. Body weight, biochemical markers, rate-limiting enzymes, and key proteins were assessed. Hematoxylin and eosin (H&E) and Oil Red O staining were performed. RESULTS Phenotypic data showed that GPA decreased free fatty acid (FFA)-induced lipid buildup and high reactive oxygen species (ROS) levels, reversed the decrease in mitochondrial membrane potential (MMP), and increased the cellular reduced glutathione/oxidized glutathione disulfide (GSH/GSSG) ratio. GPA also reduces high glucose-induced lipid build-up and ROS production in C. elegans. Metabolomic analysis showed that GPA affected purine, lipid, and amino acid metabolism. Moreover, GPA inhibited xanthine oxidase (XOD), glutamate dehydrogenase (GLDH), fatty acid synthase (FAS), phosphorylation of P38 MAPK, and upregulated the expression of SIRT3 and CPT1A protein production to control lipid metabolism and produce antioxidant benefits in cells and golden hamsters. CONCLUSION Current evidence suggests that GPA can effectively regulate lipid metabolism and the oxidative stress response, and has the potential to prevent hyperlipidemia. This study also provided an effective method for evaluating the mechanism of action of GPA.
Collapse
Affiliation(s)
- Han Huang
- Key Laboratory of Forest Plant Ecology, Ministry of Education, Northeast Forestry University, Harbin 150040, PR China; Engineering Research Center of Forest Bio-Preparation, Ministry of Education, Northeast Forestry University, Harbin 150040, PR China; College of Chemistry, Chemical Engineering and Resource Utilization, Northeast Forestry University, Harbin 150040, PR China
| | - Qi Gu
- The College of Forestry, Beijing Forestry University, Beijing 100083, PR China
| | - Si-Ming Nie
- Key Laboratory of Forest Plant Ecology, Ministry of Education, Northeast Forestry University, Harbin 150040, PR China; Engineering Research Center of Forest Bio-Preparation, Ministry of Education, Northeast Forestry University, Harbin 150040, PR China; College of Chemistry, Chemical Engineering and Resource Utilization, Northeast Forestry University, Harbin 150040, PR China
| | - Jian-Dong Wang
- The College of Forestry, Beijing Forestry University, Beijing 100083, PR China
| | - Heng Zhao
- Key Laboratory of Forest Plant Ecology, Ministry of Education, Northeast Forestry University, Harbin 150040, PR China; Engineering Research Center of Forest Bio-Preparation, Ministry of Education, Northeast Forestry University, Harbin 150040, PR China; College of Chemistry, Chemical Engineering and Resource Utilization, Northeast Forestry University, Harbin 150040, PR China
| | - Bo-Wen Zhai
- Key Laboratory of Forest Plant Ecology, Ministry of Education, Northeast Forestry University, Harbin 150040, PR China; Engineering Research Center of Forest Bio-Preparation, Ministry of Education, Northeast Forestry University, Harbin 150040, PR China; College of Chemistry, Chemical Engineering and Resource Utilization, Northeast Forestry University, Harbin 150040, PR China
| | - Mao-Yu Zhang
- Key Laboratory of Forest Plant Ecology, Ministry of Education, Northeast Forestry University, Harbin 150040, PR China; Engineering Research Center of Forest Bio-Preparation, Ministry of Education, Northeast Forestry University, Harbin 150040, PR China; College of Chemistry, Chemical Engineering and Resource Utilization, Northeast Forestry University, Harbin 150040, PR China
| | - Yu-Jie Fu
- The College of Forestry, Beijing Forestry University, Beijing 100083, PR China.
| |
Collapse
|
3
|
Zhou C, Li P, Fu S, You Y, Guo S, Piyaporn C, Mei X, Zhou X, Girdthai T. Metabolomics reveals the importance of metabolites in Mussaenda pubescens for antioxidant properties and quality traits. PHYSIOLOGIA PLANTARUM 2024; 176:e14299. [PMID: 38628104 DOI: 10.1111/ppl.14299] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Revised: 03/11/2024] [Accepted: 03/23/2024] [Indexed: 04/19/2024]
Abstract
Mussaenda pubescens (Mp) is a valuable medicinal plant that has traditionally been used for medicinal purposes or as a tea substitute. However, there are few studies on the comprehensive and dynamic evaluation of Mp metabolites. This study used an ultra-performance liquid chromatography-tandem mass spectrometry (UPLC-MS/MS) approach and biochemical analysis to investigate substance changes in leaves at three different stages and elucidate the relationship between metabolites and antioxidant capacity. The findings showed that Mp leaves contained 957 metabolites, the majority of which were phenolic acids, lipids, and terpenoids. The metabolite profiling of Mp leaves was significantly influenced by their growth and development at different stages. A total of 317 differentially accumulated metabolites (DAMs) were screened, including 150 primary metabolites and 167 secondary metabolites, with 202 DAMs found in bud leaf vs. tender leaf, 54 DAMs in tender leaf vs. mature leaf, and 254 DAMs in bud leaf vs. mature leaf. Total phenolics, flavonoids, and anthocyanin concentrations decreased as Mp leaves grew and developed, whereas terpenoids increased significantly. The secondary metabolites also demonstrated a positive correlation with antioxidant activity. Phenolics, flavonoids, terpenoids, and anthocyanins were the primary factors influencing the antioxidant activity of leaves. These findings provide new insights into the metabolite formation mechanism, as well as the development and utilization of Mp tea.
Collapse
Affiliation(s)
- Caibi Zhou
- School of Crop Production Technology, Institute of Agricultural Technology, Suranaree University of Technology, Nakhon Ratchasima, Thailand
- College of Biological Science and Agriculture, Qiannan Normal University for Nationalities, Duyun, China
| | - Ping Li
- College of Biological Science and Agriculture, Qiannan Normal University for Nationalities, Duyun, China
| | - Shanshan Fu
- College of Biological Science and Agriculture, Qiannan Normal University for Nationalities, Duyun, China
| | - Yan You
- College of Biological Science and Agriculture, Qiannan Normal University for Nationalities, Duyun, China
| | - Sijian Guo
- College of Biological Science and Agriculture, Qiannan Normal University for Nationalities, Duyun, China
| | - Chueamchaitrakun Piyaporn
- School of Agro-Industry, Mae Fah Luang University, Chiang Rai, Thailand
- Tea and Coffee Institute, Mae Fah Luang University, Chiang Rai, Thailand
| | - Xin Mei
- College of Biological Science and Agriculture, Qiannan Normal University for Nationalities, Duyun, China
| | - Xiaolu Zhou
- School of Crop Production Technology, Institute of Agricultural Technology, Suranaree University of Technology, Nakhon Ratchasima, Thailand
- College of Biological Science and Agriculture, Qiannan Normal University for Nationalities, Duyun, China
| | - Teerayoot Girdthai
- School of Crop Production Technology, Institute of Agricultural Technology, Suranaree University of Technology, Nakhon Ratchasima, Thailand
| |
Collapse
|