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Hori M, Takada H, Nakane Y, Minami M, Inoue E. Genetic Analysis Reveals Dispersal Patterns of Japanese Serow in Two Different Habitats of a Mountainous Region. Zoolog Sci 2024; 41:201-209. [PMID: 38587915 DOI: 10.2108/zs230055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Accepted: 11/13/2023] [Indexed: 04/10/2024]
Abstract
Dispersal increases the costs of feeding and predation risk in the new environment and is reported to be biased toward habitats similar to the natal region in some mammals. The benefits and costs of dispersal often differ between sexes, and most mammals show male-biased dispersal in relation to a polygamous mating system. Japanese serow is generally a solitary and monogamous species. However, recent studies have shown that the sociality of serows on Mt. Asama differs between habitat types. In the mountain forests with low forage availability, solitary habits and social monogamy were observed, while, in alpine grasslands, female grouping and social polygyny were observed, which is probably due to abundant forage availability. We investigated the effects of habitat characteristics and sociality on the dispersal of serows using fecal and tissue samples from two different habitats on Mt. Asama. The Fst value between the two areas was significantly positive, and the mean relatedness within areas was significantly higher than that between areas, which suggests limited gene flow and natal habitat-biased dispersal. Bayesian clustering analysis showed unidirectional gene flow from forest to grassland, which was probably due to the high forage availability of the grassland. Analyses of the assignment index and mean relatedness did not show male-biased dispersal, even in the grassland, where serows were polygynous. Thus, polygyny in the grassland is not linked to male-biased dispersal. In summary, our study suggests that dispersal patterns in Japanese serows are affected by habitat rather than social differences.
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Affiliation(s)
- Maiko Hori
- Toho University, Funabashi, Chiba 274-8510, Japan
| | - Hayato Takada
- Wildlife Management Center, Tokyo University of Agriculture and Technology, Fuchu, Tokyo 183-8509, Japan
- Azabu University, Chuo-ku, Sagamihara, Kanagawa 252-5201, Japan
- Mount Fuji Research Institute, Yamanashi Prefecture Government, Fijiyoshida, Yamanashi 403-0005, Japan
| | - Yuki Nakane
- Toho University, Funabashi, Chiba 274-8510, Japan
| | - Masato Minami
- Azabu University, Chuo-ku, Sagamihara, Kanagawa 252-5201, Japan
| | - Eiji Inoue
- Toho University, Funabashi, Chiba 274-8510, Japan,
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2
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Do common dispersal influences inform a large lizard’s landscape-scale gene flow? Evol Ecol 2022. [DOI: 10.1007/s10682-022-10208-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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3
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Lim QL, Yong CSY, Ng WL, Ismail A, Rovie-Ryan JJ, Rosli N, Inoue-Murayama M, Annavi G. Population genetic structure of wild Malayan tapirs (Tapirus indicus) in Peninsular Malaysia revealed by nine cross-species microsatellite markers. Glob Ecol Conserv 2022. [DOI: 10.1016/j.gecco.2022.e02321] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
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4
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Herrero A, Klütsch CFC, Holmala K, Maduna SN, Kopatz A, Eiken HG, Hagen SB. Genetic analysis indicates spatial-dependent patterns of sex-biased dispersal in Eurasian lynx in Finland. PLoS One 2021; 16:e0246833. [PMID: 33606691 PMCID: PMC7894887 DOI: 10.1371/journal.pone.0246833] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2020] [Accepted: 01/26/2021] [Indexed: 11/18/2022] Open
Abstract
Conservation and management of large carnivores requires knowledge of female and male dispersal. Such information is crucial to evaluate the population's status and thus management actions. This knowledge is challenging to obtain, often incomplete and contradictory at times. The size of the target population and the methods applied can bias the results. Also, population history and biological or environmental influences can affect dispersal on different scales within a study area. We have genotyped Eurasian lynx (180 males and 102 females, collected 2003-2017) continuously distributed in southern Finland (~23,000 km2) using 21 short tandem repeats (STR) loci and compared statistical genetic tests to infer local and sex-specific dispersal patterns within and across genetic clusters as well as geographic regions. We tested for sex-specific substructure with individual-based Bayesian assignment tests and spatial autocorrelation analyses. Differences between the sexes in genetic differentiation, relatedness, inbreeding, and diversity were analysed using population-based AMOVA, F-statistics, and assignment indices. Our results showed two different genetic clusters that were spatially structured for females but admixed for males. Similarly, spatial autocorrelation and relatedness was significantly higher in females than males. However, we found weaker sex-specific patterns for the Eurasian lynx when the data were separated in three geographical regions than when divided in the two genetic clusters. Overall, our results suggest male-biased dispersal and female philopatry for the Eurasian lynx in Southern Finland. The female genetic structuring increased from west to east within our study area. In addition, detection of male-biased dispersal was dependent on analytical methods utilized, on whether subtle underlying genetic structuring was considered or not, and the choice of population delineation. Conclusively, we suggest using multiple genetic approaches to study sex-biased dispersal in a continuously distributed species in which population delineation is difficult.
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Affiliation(s)
- Annika Herrero
- Natural Resources Institute Finland (Luke), Helsinki, Finland
- University of Helsinki, Helsinki, Finland
| | - Cornelya F. C. Klütsch
- NIBIO—Division of Environment and Natural Resources, Norwegian Institute of Bioeconomy Research, Svanvik, Norway
| | - Katja Holmala
- Natural Resources Institute Finland (Luke), Helsinki, Finland
- * E-mail: (KH); (SBH)
| | - Simo N. Maduna
- NIBIO—Division of Environment and Natural Resources, Norwegian Institute of Bioeconomy Research, Svanvik, Norway
| | - Alexander Kopatz
- Norwegian Institute for Nature Research (NINA), Trondheim, Norway
| | - Hans Geir Eiken
- NIBIO—Division of Environment and Natural Resources, Norwegian Institute of Bioeconomy Research, Svanvik, Norway
| | - Snorre B. Hagen
- NIBIO—Division of Environment and Natural Resources, Norwegian Institute of Bioeconomy Research, Svanvik, Norway
- * E-mail: (KH); (SBH)
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5
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Richardson JL, Michaelides S, Combs M, Djan M, Bisch L, Barrett K, Silveira G, Butler J, Aye TT, Munshi‐South J, DiMatteo M, Brown C, McGreevy TJ. Dispersal ability predicts spatial genetic structure in native mammals persisting across an urbanization gradient. Evol Appl 2021; 14:163-177. [PMID: 33519963 PMCID: PMC7819555 DOI: 10.1111/eva.13133] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2020] [Accepted: 08/17/2020] [Indexed: 01/31/2023] Open
Abstract
As the rate of urbanization continues to increase globally, a growing body of research is emerging that investigates how urbanization shapes the movement-and consequent gene flow-of species in cities. Of particular interest are native species that persist in cities, either as small relict populations or as larger populations of synanthropic species that thrive alongside humans in new urban environments. In this study, we used genomic sequence data (SNPs) and spatially explicit individual-based analyses to directly compare the genetic structure and patterns of gene flow in two small mammals with different dispersal abilities that occupy the same urbanized landscape to evaluate how mobility impacts genetic connectivity. We collected 215 white-footed mice (Peromyscus leucopus) and 380 big brown bats (Eptesicus fuscus) across an urban-to-rural gradient within the Providence, Rhode Island (U.S.A.) metropolitan area (population =1,600,000 people). We found that mice and bats exhibit clear differences in their spatial genetic structure that are consistent with their dispersal abilities, with urbanization having a stronger effect on Peromyscus mice. There were sharp breaks in the genetic structure of mice within the Providence urban core, as well as reduced rates of migration and an increase in inbreeding with more urbanization. In contrast, bats showed very weak genetic structuring across the entire study area, suggesting a near-panmictic gene pool likely due to the ability to disperse by flight. Genetic diversity remained stable for both species across the study region. Mice also exhibited a stronger reduction in gene flow between island and mainland populations than bats. This study represents one of the first to directly compare multiple species within the same urban-to-rural landscape gradient, an important gap to fill for urban ecology and evolution. Moreover, here we document the impacts of dispersal capacity on connectivity for native species that have persisted as the urban landscape matrix expands.
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Affiliation(s)
| | - Sozos Michaelides
- Department of Natural Resources ScienceUniversity of Rhode IslandKingstonRIUSA
| | - Matthew Combs
- Ecology, Evolution and Environmental Biology DepartmentColumbia UniversityNew YorkNYUSA
| | - Mihajla Djan
- Department of Natural Resources ScienceUniversity of Rhode IslandKingstonRIUSA
- Department of Biology and EcologyFaculty of SciencesUniversity of Novi SadNovi SadSerbia
| | - Lianne Bisch
- Department of BiologyProvidence CollegeProvidenceRIUSA
| | - Kerry Barrett
- Department of BiologyProvidence CollegeProvidenceRIUSA
| | | | - Justin Butler
- Department of BiologyUniversity of RichmondRichmondVAUSA
| | - Than Thar Aye
- Department of BiologyUniversity of RichmondRichmondVAUSA
| | | | - Michael DiMatteo
- State Health LaboratoryRhode Island Department of HealthProvidenceRIUSA
| | - Charles Brown
- Division of Fish & WildlifeRhode Island Department of Environmental ManagementWest KingstonRIUSA
| | - Thomas J. McGreevy
- Department of Natural Resources ScienceUniversity of Rhode IslandKingstonRIUSA
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6
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Connectivity and population structure of albacore tuna across southeast Atlantic and southwest Indian Oceans inferred from multidisciplinary methodology. Sci Rep 2020; 10:15657. [PMID: 32973260 PMCID: PMC7519111 DOI: 10.1038/s41598-020-72369-w] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2019] [Accepted: 07/09/2020] [Indexed: 11/17/2022] Open
Abstract
Albacore tuna (Thunnus alalunga) is an important target of tuna fisheries in the Atlantic and Indian Oceans. The commercial catch of albacore is the highest globally among all temperate tuna species, contributing around 6% in weight to global tuna catches over the last decade. The accurate assessment and management of this heavily exploited resource requires a robust understanding of the species’ biology and of the pattern of connectivity among oceanic regions, yet Indian Ocean albacore population dynamics remain poorly understood and its level of connectivity with the Atlantic Ocean population is uncertain. We analysed morphometrics and genetics of albacore (n = 1,874) in the southwest Indian (SWIO) and southeast Atlantic (SEAO) Oceans to investigate the connectivity and population structure. Furthermore, we examined the species’ dispersal potential by modelling particle drift through major oceanographic features. Males appear larger than females, except in South African waters, yet the length–weight relationship only showed significant male–female difference in one region (east of Madagascar and Reunion waters). The present study produced a genetic differentiation between the southeast Atlantic and southwest Indian Oceans, supporting their demographic independence. The particle drift models suggested dispersal potential of early life stages from SWIO to SEAO and adult or sub-adult migration from SEAO to SWIO.
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7
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Nikolic N, Thompson P, de Bruyn M, Macé M, Chevalet C. Evolutionary history of a Scottish harbour seal population. PeerJ 2020; 8:e9167. [PMID: 32728487 PMCID: PMC7357561 DOI: 10.7717/peerj.9167] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Accepted: 04/19/2020] [Indexed: 12/02/2022] Open
Abstract
Efforts to conserve marine mammals are often constrained by uncertainty over their population history. Here, we examine the evolutionary history of a harbour seal (Phoca vitulina) population in the Moray Firth, northeast Scotland using genetic tools and microsatellite markers to explore population change. Previous fine-scale analysis of UK harbour seal populations revealed three clusters in the UK, with a northeastern cluster that included our Moray Firth study population. Our analysis revealed that the Moray Firth cluster is an independent genetic group, with similar levels of genetic diversity across each of the localities sampled. These samples were used to assess historic abundance and demographic events in the Moray Firth population. Estimates of current genetic diversity and effective population size were low, but the results indicated that this population has remained at broadly similar levels following the population bottleneck that occurred after post-glacial recolonization of the area.
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Affiliation(s)
- Natacha Nikolic
- ARBRE (Reunion Island Biodiversity Research Agency), Saint-Leu, La Réunion
- Génétique Physiologie et Systèmes d’Elevage - UMR1388, INRAE, Castanet Tolosan, France
| | - Paul Thompson
- Lighthouse Field Station, Sciences School of Biological Sciences, University of Aberdeen, Cromarty, United Kingdom
| | - Mark de Bruyn
- School of Life and Environmental Sciences, University of Sydney, Sydney, Australia
| | - Matthias Macé
- Laboratoire d’Anthropologie Moléculaire et d’Imagerie de Synthèse - UMR 5288, CNRS, Toulouse, France
| | - Claude Chevalet
- Génétique Physiologie et Systèmes d’Elevage - UMR1388, INRAE, Castanet Tolosan, France
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8
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Satoh SS, Murata C, Yoshida K, Shibata K, Tamate HB. Population Genetic Study of the Lesser Japanese Mole Mogera imaizumii using Novel Microsatellite Markers with Special Reference to Sex-Biased Dispersal. MAMMAL STUDY 2019. [DOI: 10.3106/ms2018-0031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Affiliation(s)
- Shin S. Satoh
- Graduate School of Science and Engineering, Yamagata University, Kojirakawa 1-4-12, Yamagata 990-8560, Japan
| | - Chie Murata
- Graduate School of Science and Engineering, Yamagata University, Kojirakawa 1-4-12, Yamagata 990-8560, Japan
| | - Kenji Yoshida
- Graduate School of Science and Engineering, Yamagata University, Kojirakawa 1-4-12, Yamagata 990-8560, Japan
| | - Kiyotaka Shibata
- Ishinomaki Senshu University ,Minamizakai-shinmito 1, Ishinomaki, Miyagi 986-8580, Japan
| | - Hidetoshi B. Tamate
- Department of Science, Faculty of Science, Yamagata University, Kojirakawa 1-4-12, Yamagata 990-8560, Japan
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9
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Corrigan S, Lowther AD, Beheregaray LB, Bruce BD, Cliff G, Duffy CA, Foulis A, Francis MP, Goldsworthy SD, Hyde JR, Jabado RW, Kacev D, Marshall L, Mucientes GR, Naylor GJP, Pepperell JG, Queiroz N, White WT, Wintner SP, Rogers PJ. Population Connectivity of the Highly Migratory Shortfin Mako (Isurus oxyrinchus Rafinesque 1810) and Implications for Management in the Southern Hemisphere. Front Ecol Evol 2018. [DOI: 10.3389/fevo.2018.00187] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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10
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Ferreira CM, Sabino-Marques H, Barbosa S, Costa P, Encarnação C, Alpizar-Jara R, Pita R, Beja P, Mira A, Searle JB, Paupério J, Alves PC. Genetic non-invasive sampling (gNIS) as a cost-effective tool for monitoring elusive small mammals. EUR J WILDLIFE RES 2018. [DOI: 10.1007/s10344-018-1188-8] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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11
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Padró J, Lambertucci SA, Perrig PL, Pauli JN. Evidence of genetic structure in a wide-ranging and highly mobile soaring scavenger, the Andean condor. DIVERS DISTRIB 2018. [DOI: 10.1111/ddi.12786] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Affiliation(s)
- Julian Padró
- Grupo de Investigaciones en Biología de la Conservación; Laboratorio Ecotono; INIBIOMA (Universidad Nacional del Comahue-CONICET); Bariloche Argentina
- Department of Forest and Wildlife Ecology; University of Wisconsin-Madison; USA
| | - Sergio A. Lambertucci
- Grupo de Investigaciones en Biología de la Conservación; Laboratorio Ecotono; INIBIOMA (Universidad Nacional del Comahue-CONICET); Bariloche Argentina
| | - Paula L. Perrig
- Department of Forest and Wildlife Ecology; University of Wisconsin-Madison; USA
| | - Jonathan N. Pauli
- Department of Forest and Wildlife Ecology; University of Wisconsin-Madison; USA
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12
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Halczok TK, Brändel SD, Flores V, Puechmaille SJ, Tschapka M, Page RA, Kerth G. Male-biased dispersal and the potential impact of human-induced habitat modifications on the Neotropical bat Trachops cirrhosus. Ecol Evol 2018; 8:6065-6080. [PMID: 29988406 PMCID: PMC6024115 DOI: 10.1002/ece3.4161] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2018] [Revised: 03/26/2018] [Accepted: 04/16/2018] [Indexed: 12/25/2022] Open
Abstract
Gene flow, maintained through natal dispersal and subsequent mating events, is one of the most important processes in both ecology and population genetics. Among mammalian populations, gene flow is strongly affected by a variety of factors, including the species' ability to disperse, and the composition of the environment which can limit dispersal. Information on dispersal patterns is thus crucial both for conservation management and for understanding the social system of a species. We used 16 polymorphic nuclear microsatellite loci in addition to mitochondrial DNA sequences (1.61 kbp) to analyse the population structure and the sex-specific pattern of natal dispersal in the frog-eating fringe-lipped bat, Trachops cirrhosus, in Central Panama. Our study revealed that-unlike most of the few other investigated Neotropical bats-gene flow in this species is mostly male-mediated. Nevertheless, distinct genetic clusters occur in both sexes. In particular, the presence of genetic differentiation in the dataset only consisting of the dispersing sex (males) indicates that gene flow is impeded within our study area. Our data are in line with the Panama Canal in connection with the widening of the Río Chagres during the canal construction acting as a recent barrier to gene flow. The sensitivity of T. cirrhosus to human-induced habitat modifications is further indicated by an extremely low capture success in highly fragmented areas. Taken together, our genetic and capture data provide evidence for this species to be classified as less mobile and thus vulnerable to habitat change, information that is important for conservation management.
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Affiliation(s)
- Tanja K. Halczok
- Zoological Institute and MuseumGreifswald UniversityGreifswaldGermany
- Smithsonian Tropical Research InstituteBalboa, AncónRepublic of Panamá
| | - Stefan D. Brändel
- Smithsonian Tropical Research InstituteBalboa, AncónRepublic of Panamá
- Institute of Evolutionary Ecology and Conservation GenomicsUniversity of UlmUlmGermany
| | - Victoria Flores
- Smithsonian Tropical Research InstituteBalboa, AncónRepublic of Panamá
- Committee on Evolutionary BiologyUniversity of ChicagoChicagoIllinois
| | | | - Marco Tschapka
- Smithsonian Tropical Research InstituteBalboa, AncónRepublic of Panamá
- Institute of Evolutionary Ecology and Conservation GenomicsUniversity of UlmUlmGermany
| | - Rachel A. Page
- Smithsonian Tropical Research InstituteBalboa, AncónRepublic of Panamá
| | - Gerald Kerth
- Zoological Institute and MuseumGreifswald UniversityGreifswaldGermany
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13
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Shaw RE, Banks SC, Peakall R. The impact of mating systems and dispersal on fine-scale genetic structure at maternally, paternally and biparentally inherited markers. Mol Ecol 2017; 27:66-82. [PMID: 29154412 DOI: 10.1111/mec.14433] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2017] [Revised: 11/06/2017] [Accepted: 11/08/2017] [Indexed: 10/18/2022]
Abstract
For decades, studies have focused on how dispersal and mating systems influence genetic structure across populations or social groups. However, we still lack a thorough understanding of how these processes and their interaction shape spatial genetic patterns over a finer scale (tens-hundreds of metres). Using uniparentally inherited markers may help answer these questions, yet their potential has not been fully explored. Here, we use individual-level simulations to investigate the effects of dispersal and mating system on fine-scale genetic structure at autosomal, mitochondrial and Y chromosome markers. Using genetic spatial autocorrelation analysis, we found that dispersal was the major driver of fine-scale genetic structure across maternally, paternally and biparentally inherited markers. However, when dispersal was restricted (mean distance = 100 m), variation in mating behaviour created strong differences in the comparative level of structure detected at maternally and paternally inherited markers. Promiscuity reduced spatial genetic structure at Y chromosome loci (relative to monogamy), whereas structure increased under polygyny. In contrast, mitochondrial and autosomal markers were robust to differences in the specific mating system, although genetic structure increased across all markers when reproductive success was skewed towards fewer individuals. Comparing males and females at Y chromosome vs. mitochondrial markers, respectively, revealed that some mating systems can generate similar patterns to those expected under sex-biased dispersal. This demonstrates the need for caution when inferring ecological and behavioural processes from genetic results. Comparing patterns between the sexes, across a range of marker types, may help us tease apart the processes shaping fine-scale genetic structure.
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Affiliation(s)
- Robyn E Shaw
- Ecology and Evolution, Research School of Biology, The Australian National University, Canberra, ACT, Australia.,The Fenner School of Environment and Society, The Australian National University, Canberra, ACT, Australia
| | - Sam C Banks
- The Fenner School of Environment and Society, The Australian National University, Canberra, ACT, Australia
| | - Rod Peakall
- Ecology and Evolution, Research School of Biology, The Australian National University, Canberra, ACT, Australia
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14
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Socio-genetic correlates of unbiased sex dispersal in a population of black capuchin monkeys (Sapajus nigritus). Acta Ethol 2017. [DOI: 10.1007/s10211-017-0277-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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15
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Benestan L, Moore JS, Sutherland BJG, Le Luyer J, Maaroufi H, Rougeux C, Normandeau E, Rycroft N, Atema J, Harris LN, Tallman RF, Greenwood SJ, Clark FK, Bernatchez L. Sex matters in massive parallel sequencing: Evidence for biases in genetic parameter estimation and investigation of sex determination systems. Mol Ecol 2017; 26:6767-6783. [DOI: 10.1111/mec.14217] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2016] [Revised: 03/23/2017] [Accepted: 03/29/2017] [Indexed: 12/26/2022]
Affiliation(s)
- Laura Benestan
- Département de Biologie; Université Laval; Québec QC Canada
- Institut de Biologie Intégrative et des Systèmes (IBIS); Université Laval; Québec QC Canada
| | - Jean-Sébastien Moore
- Département de Biologie; Université Laval; Québec QC Canada
- Institut de Biologie Intégrative et des Systèmes (IBIS); Université Laval; Québec QC Canada
| | - Ben J. G. Sutherland
- Département de Biologie; Université Laval; Québec QC Canada
- Institut de Biologie Intégrative et des Systèmes (IBIS); Université Laval; Québec QC Canada
| | - Jérémy Le Luyer
- Département de Biologie; Université Laval; Québec QC Canada
- Institut de Biologie Intégrative et des Systèmes (IBIS); Université Laval; Québec QC Canada
| | - Halim Maaroufi
- Institut de Biologie Intégrative et des Systèmes (IBIS); Université Laval; Québec QC Canada
| | - Clément Rougeux
- Département de Biologie; Université Laval; Québec QC Canada
- Institut de Biologie Intégrative et des Systèmes (IBIS); Université Laval; Québec QC Canada
| | - Eric Normandeau
- Département de Biologie; Université Laval; Québec QC Canada
- Institut de Biologie Intégrative et des Systèmes (IBIS); Université Laval; Québec QC Canada
| | | | - Jelle Atema
- Department of Biology; Boston University; Boston MA USA
| | - Les N. Harris
- Fisheries and Oceans Canada; Freshwater Institute; Winnipeg MB Canada
| | - Ross F. Tallman
- Fisheries and Oceans Canada; Freshwater Institute; Winnipeg MB Canada
| | - Spencer J. Greenwood
- Department of Biomedical Sciences & AVC Lobster Science Centre; Atlantic Veterinary College; University of Prince Edward Island; Charlottetown PE Canada
| | - Fraser K. Clark
- Department of Biomedical Sciences & AVC Lobster Science Centre; Atlantic Veterinary College; University of Prince Edward Island; Charlottetown PE Canada
| | - Louis Bernatchez
- Département de Biologie; Université Laval; Québec QC Canada
- Institut de Biologie Intégrative et des Systèmes (IBIS); Université Laval; Québec QC Canada
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16
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Gutiérrez-Rodríguez J, Sánchez-Montes G, Martínez-Solano I. Effective to census population size ratios in two Near Threatened Mediterranean amphibians: Pleurodeles waltl and Pelobates cultripes. CONSERV GENET 2017. [DOI: 10.1007/s10592-017-0971-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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17
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Isselin-Nondedeu F, Trochet A, Joubin T, Picard D, Etienne R, Chevalier HL, Legrand D, Ribéron A. Spatial genetic structure of Lissotriton helveticus L. following the restoration of a forest ponds network. CONSERV GENET 2017. [DOI: 10.1007/s10592-017-0932-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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18
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Gamble T. Using RAD-seq to recognize sex-specific markers and sex chromosome systems. Mol Ecol 2016; 25:2114-6. [DOI: 10.1111/mec.13648] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2016] [Accepted: 04/08/2016] [Indexed: 01/03/2023]
Affiliation(s)
- Tony Gamble
- Department of Biological Sciences; Marquette University; Milwaukee WI 53201 USA
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19
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Devillard S, Say EJ, Pontier D. Molecular and behavioural analyses reveal male-biased dispersal between social groups of domestic cats. ECOSCIENCE 2016. [DOI: 10.1080/11956860.2004.11682822] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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20
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Drivers of Population Structure of the Bottlenose Dolphin (Tursiops truncatus) in the Eastern Mediterranean Sea. Evol Biol 2015. [DOI: 10.1007/s11692-015-9309-8] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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Martins MM, Nascimento ATA, Nali C, Velastin GO, Mangini PB, Valladares-Padua CB, Galetti PM. A test for sex-biased dispersal in the black-faced lion tamarin (Leontopithecus caissara): inferences from microsatellite markers. STUDIES ON NEOTROPICAL FAUNA AND ENVIRONMENT 2014. [DOI: 10.1080/01650521.2014.978660] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Mabry KE. Effects of sex and population density on dispersal and spatial genetic structure in brush mice. J Mammal 2014. [DOI: 10.1644/14-mamm-a-008] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
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Investigating population genetic structure in a highly mobile marine organism: the minke whale Balaenoptera acutorostrata acutorostrata in the North East Atlantic. PLoS One 2014; 9:e108640. [PMID: 25268591 PMCID: PMC4182549 DOI: 10.1371/journal.pone.0108640] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2014] [Accepted: 08/04/2014] [Indexed: 11/19/2022] Open
Abstract
Inferring the number of genetically distinct populations and their levels of connectivity is of key importance for the sustainable management and conservation of wildlife. This represents an extra challenge in the marine environment where there are few physical barriers to gene-flow, and populations may overlap in time and space. Several studies have investigated the population genetic structure within the North Atlantic minke whale with contrasting results. In order to address this issue, we analyzed ten microsatellite loci and 331 bp of the mitochondrial D-loop on 2990 whales sampled in the North East Atlantic in the period 2004 and 2007-2011. The primary findings were: (1) No spatial or temporal genetic differentiations were observed for either class of genetic marker. (2) mtDNA identified three distinct mitochondrial lineages without any underlying geographical pattern. (3) Nuclear markers showed evidence of a single panmictic population in the NE Atlantic according STRUCTURE's highest average likelihood found at K = 1. (4) When K = 2 was accepted, based on the Evanno's test, whales were divided into two more or less equally sized groups that showed significant genetic differentiation between them but without any sign of underlying geographic pattern. However, mtDNA for these individuals did not corroborate the differentiation. (5) In order to further evaluate the potential for cryptic structuring, a set of 100 in silico generated panmictic populations was examined using the same procedures as above showing genetic differentiation between two artificially divided groups, similar to the aforementioned observations. This demonstrates that clustering methods may spuriously reveal cryptic genetic structure. Based upon these data, we find no evidence to support the existence of spatial or cryptic population genetic structure of minke whales within the NE Atlantic. However, in order to conclusively evaluate population structure within this highly mobile species, more markers will be required.
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Podgórski T, Scandura M, Jędrzejewska B. Next of kin next door - philopatry and socio-genetic population structure in wild boar. J Zool (1987) 2014. [DOI: 10.1111/jzo.12167] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- T. Podgórski
- Mammal Research Institute; Polish Academy of Sciences; Białowieża Poland
| | - M. Scandura
- Department of Science for Nature and Environmental Resources; University of Sassari; Sassari Italy
| | - B. Jędrzejewska
- Mammal Research Institute; Polish Academy of Sciences; Białowieża Poland
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Collins CR, Kays RW. Patterns of Mortality in a Wild Population of White-Footed Mice. Northeast Nat (Steuben) 2014. [DOI: 10.1656/045.021.0213] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Richards VP, Greig TW, Fair PA, McCulloch SD, Politz C, Natoli A, Driscoll CA, Hoelzel AR, David V, Bossart GD, Lopez JV. Patterns of population structure for inshore bottlenose dolphins along the eastern United States. ACTA ACUST UNITED AC 2014; 104:765-78. [PMID: 24129993 DOI: 10.1093/jhered/est070] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
Globally distributed, the bottlenose dolphin (Tursiops truncatus) is found in a range of offshore and coastal habitats. Using 15 microsatellite loci and mtDNA control region sequences, we investigated patterns of genetic differentiation among putative populations along the eastern US shoreline (the Indian River Lagoon, Florida, and Charleston Harbor, South Carolina) (microsatellite analyses: n = 125, mtDNA analyses: n = 132). We further utilized the mtDNA to compare these populations with those from the Northwest Atlantic, Gulf of Mexico, and Caribbean. Results showed strong differentiation among inshore, alongshore, and offshore habitats (ФST = 0.744). In addition, Bayesian clustering analyses revealed the presence of 2 genetic clusters (populations) within the 250 km Indian River Lagoon. Habitat heterogeneity is likely an important force diversifying bottlenose dolphin populations through its influence on social behavior and foraging strategy. We propose that the spatial pattern of genetic variation within the lagoon reflects both its steep longitudinal transition of climate and also its historical discontinuity and recent connection as part of Intracoastal Waterway development. These findings have important management implications as they emphasize the role of habitat and the consequence of its modification in shaping bottlenose dolphin population structure and highlight the possibility of multiple management units existing in discrete inshore habitats along the entire eastern US shoreline.
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Affiliation(s)
- Vincent P Richards
- the Department of Population Medicine and Diagnostic Sciences, College of Veterinary Medicine, Cornell University, Ithaca, NY 14853
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Munshi-South J, Nagy C. Urban park characteristics, genetic variation, and historical demography of white-footed mouse (Peromyscus leucopus) populations in New York City. PeerJ 2014; 2:e310. [PMID: 24688884 PMCID: PMC3961106 DOI: 10.7717/peerj.310] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2013] [Accepted: 02/25/2014] [Indexed: 01/16/2023] Open
Abstract
Severe fragmentation is a typical fate of native remnant habitats in cities, and urban wildlife with limited dispersal ability are predicted to lose genetic variation in isolated urban patches. However, little information exists on the characteristics of urban green spaces required to conserve genetic variation. In this study, we examine whether isolation in New York City (NYC) parks results in genetic bottlenecks in white-footed mice (Peromyscus leucopus), and test the hypotheses that park size and time since isolation are associated with genetic variability using nonlinear regression and information-theoretic model selection. White-footed mice have previously been documented to exhibit male-biased dispersal, which may create disparities in genetic variation between males and females in urban parks. We use genotypes of 18 neutral microsatellite data and four different statistical tests to assess this prediction. Given that sex-biased dispersal may create disparities between population genetic patterns inferred from bi- vs. uni-parentally inherited markers, we also sequenced a 324 bp segment of the mitochondrial D-loop for independent inferences of historical demography in urban P. leucopus. We report that isolation in urban parks does not necessarily result in genetic bottlenecks; only three out of 14 populations in NYC parks exhibited a signature of a recent bottleneck at 18 neutral microsatellite loci. Mouse populations in larger urban parks, or parks that have been isolated for shorter periods of time, also do not generally contain greater genetic variation than populations in smaller parks. These results suggest that even small networks of green spaces may be sufficient to maintain the evolutionary potential of native species with certain characteristics. We also found that isolation in urban parks results in weak to nonexistent sex-biased dispersal in a species known to exhibit male-biased dispersal in less fragmented environments. In contrast to nuclear loci, mitochondrial D-loop haplotypes exhibited a mutational pattern of demographic expansion after a recent bottleneck or selective sweep. Estimates of the timing of this expansion suggest that it occurred concurrent with urbanization of NYC over the last few dozens to hundreds of years. Given the general non-neutrality of mtDNA in many systems and evidence of selection on related coding sequences in urban P. leucopus, we argue that the P. leucopus mitochondrial genome experienced recent negative selection against haplotypes not favored in isolated urban parks. In general, rapid adaptive evolution driven by urbanization, global climate change, and other human-caused factors is underappreciated by evolutionary biologists, but many more cases will likely be documented in the near future.
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Affiliation(s)
- Jason Munshi-South
- Department of Biological Sciences and the Louis Calder Center-Biological Field Station, Fordham University , Armonk, NY , USA
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Roffler GH, Talbot SL, Luikart G, Sage GK, Pilgrim KL, Adams LG, Schwartz MK. Lack of sex-biased dispersal promotes fine-scale genetic structure in alpine ungulates. CONSERV GENET 2014. [DOI: 10.1007/s10592-014-0583-2] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Montague MJ, Disotell TR, Di Fiore A. Population Genetics, Dispersal, and Kinship Among Wild Squirrel Monkeys (Saimiri sciureus macrodon): Preferential Association Between Closely Related Females and Its Implications for Insect Prey Capture Success. INT J PRIMATOL 2013. [DOI: 10.1007/s10764-013-9723-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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Genetically distinct Glossina fuscipes fuscipes populations in the Lake Kyoga region of Uganda and its relevance for human African trypanosomiasis. BIOMED RESEARCH INTERNATIONAL 2013; 2013:614721. [PMID: 24199195 PMCID: PMC3807537 DOI: 10.1155/2013/614721] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/30/2013] [Accepted: 08/19/2013] [Indexed: 11/18/2022]
Abstract
Tsetse flies (Glossina spp.) are the sole vectors of Trypanosoma brucei—the agent of human (HAT) and animal (AAT) trypanosomiasis. Glossina fuscipes fuscipes (Gff) is the main vector species in Uganda—the only country where the two forms of HAT disease (rhodesiense and gambiense) occur, with gambiense limited to the northwest. Gff populations cluster in three genetically distinct groups in northern, southern, and western Uganda, respectively, with a contact zone present in central Uganda. Understanding the dynamics of this contact zone is epidemiologically important as the merger of the two diseases is a major health concern. We used mitochondrial and microsatellite DNA data from Gff samples in the contact zone to understand its spatial extent and temporal stability. We show that this zone is relatively narrow, extending through central Uganda along major rivers with south to north introgression but displaying no sex-biased dispersal. Lack of obvious vicariant barriers suggests that either environmental conditions or reciprocal competitive exclusion could explain the patterns of genetic differentiation observed. Lack of admixture between northern and southern populations may prevent the sympatry of the two forms of HAT disease, although continued control efforts are needed to prevent the recolonization of tsetse-free regions by neighboring populations.
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Berkman LK, Nielsen CK, Roy CL, Heist EJ. Population genetic structure among bobwhite in an agriculturally modified landscape. J Wildl Manage 2013. [DOI: 10.1002/jwmg.597] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Leah K. Berkman
- Cooperative Wildlife Research Laboratory; Department of Zoology; Southern Illinois University Carbondale; Carbondale IL 62901-6504 USA
| | - Clayton K. Nielsen
- Cooperative Wildlife Research Laboratory; Department of Forestry; Southern Illinois University Carbondale; Carbondale IL 62901-6504 USA
| | - Charlotte L. Roy
- Forest Wildlife Populations and Research Group; Minnesota Department of Natural Resources; Grand Rapids MN 55744 USA
| | - Edward J. Heist
- Department of Zoology; Southern Illinois University Carbondale; Carbondale IL 62901-6501 USA
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Philopatry and dispersal patterns in tiger (Panthera tigris). PLoS One 2013; 8:e66956. [PMID: 23843973 PMCID: PMC3699573 DOI: 10.1371/journal.pone.0066956] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2013] [Accepted: 05/13/2013] [Indexed: 11/19/2022] Open
Abstract
Background Tiger populations are dwindling rapidly making it increasingly difficult to study their dispersal and mating behaviour in the wild, more so tiger being a secretive and solitary carnivore. Methods We used non-invasively obtained genetic data to establish the presence of 28 tigers, 22 females and 6 males, within the core area of Pench tiger reserve, Madhya Pradesh. This data was evaluated along with spatial autocorrelation and relatedness analyses to understand patterns of dispersal and philopatry in tigers within this well-managed and healthy tiger habitat in India. Results We established male-biased dispersal and female philopatry in tigers and reiterated this finding with multiple analyses. Females show positive correlation up to 7 kms (which corresponds to an area of approximately 160 km2) however this correlation is significantly positive only upto 4 kms, or 50 km2 (r = 0.129, p<0.0125). Males do not exhibit any significant correlation in any of the distance classes within the forest (upto 300 km2). We also show evidence of female dispersal upto 26 kms in this landscape. Conclusions Animal movements are important for fitness, reproductive success, genetic diversity and gene exchange among populations. In light of the current endangered status of tigers in the world, this study will help us understand tiger behavior and movement. Our findings also have important implications for better management of habitats and interconnecting corridors to save this charismatic species.
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Vignaud T, Clua E, Mourier J, Maynard J, Planes S. Microsatellite analyses of blacktip reef sharks (Carcharhinus melanopterus) in a fragmented environment show structured clusters. PLoS One 2013; 8:e61067. [PMID: 23585872 PMCID: PMC3622011 DOI: 10.1371/journal.pone.0061067] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2011] [Accepted: 03/08/2013] [Indexed: 11/29/2022] Open
Abstract
The population dynamics of shark species are generally poorly described because highly mobile marine life is challenging to investigate. Here we investigate the genetic population structure of the blacktip reef shark (Carcharhinus melanopterus) in French Polynesia. Five demes were sampled from five islands with different inter-island distances (50–1500 km). Whether dispersal occurs between islands frequently enough to prevent moderate genetic structure is unknown. We used 11 microsatellites loci from 165 individuals and a strong genetic structure was found among demes with both F-statistics and Bayesian approaches. This differentiation is correlated with the geographic distance between islands. It is likely that the genetic structure seen is the result of all or some combination of the following: low gene flow, time since divergence, small effective population sizes, and the standard issues with the extent to which mutation models actually fit reality. We suggest low levels of gene flow as at least a partial explanation of the level of genetic structure seen among the sampled blacktip demes. This explanation is consistent with the ecological traits of blacktip reef sharks, and that the suitable habitat for blacktips in French Polynesia is highly fragmented. Evidence for spatial genetic structure of the blacktip demes we studied highlights that similar species may have populations with as yet undetected or underestimated structure. Shark biology and the market for their fins make them highly vulnerable and many species are in rapid decline. Our results add weight to the case that total bans on shark fishing are a better conservation approach for sharks than marine protected area networks.
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Affiliation(s)
- Thomas Vignaud
- Laboratoire d'Excellence «CORAIL» USR 3278 CNRS – EPHE, CRIOBE, Papetoai, Moorea, Polynésie Française
- * E-mail: (TV); (SP)
| | - Eric Clua
- Direction Régionale Recherche et Technologie, French Ministry of Agriculture and Fisheries, Paris, France
| | - Johann Mourier
- Laboratoire d'Excellence «CORAIL» USR 3278 CNRS – EPHE, CRIOBE, Papetoai, Moorea, Polynésie Française
| | - Jeffrey Maynard
- Laboratoire d'Excellence «CORAIL» USR 3278 CNRS – EPHE, CRIOBE, Papetoai, Moorea, Polynésie Française
- Center for Marine Science, CREST Research Park of UNCW, Wilmington, North Carolina, United States of America
| | - Serge Planes
- Laboratoire d'Excellence «CORAIL» USR 3278 CNRS – EPHE, CRIOBE, Papetoai, Moorea, Polynésie Française
- * E-mail: (TV); (SP)
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Wang Y, Lane A, Ding P. Sex-biased dispersal of a frog (Odorrana schmackeri) is affected by patch isolation and resource limitation in a fragmented landscape. PLoS One 2012; 7:e47683. [PMID: 23094076 PMCID: PMC3475718 DOI: 10.1371/journal.pone.0047683] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2012] [Accepted: 09/17/2012] [Indexed: 11/18/2022] Open
Abstract
Sex-biased dispersal is widespread in the animal kingdom and is affected by numerous factors including mating system, social factors and environmental conditions. Unlike birds and mammals, there is no common trend in amphibians and explaining the direction and degree of sex-biased dispersal in species-specific cases is difficult. We conducted a study on dispersal of the Chinese piebald odorous frog (Odorrana schmackeri) in a fragmented landscape associated with dam construction. Ten microsatellite loci were used to analyze 382 samples sourced from 14 fragmented ‘islands’. Assignment tests indicated a significant pattern of female-biased dispersal on one island with inconsistencies in the strength and direction of this pattern between nearby islands. The effects of four island attributes and two potential impact factors on the pattern of sex-biased dispersal were examined. We found that the extent of isolation from the mainland and the number of breeding sites both showed a negative correlation with female biased dispersal, such that the closer an island is to the mainland the more likely it is to display female biased dispersal, and the more breeding sites on an island the more male immigrants. Based on these results, we conclude that geographic isolation and limited breeding resources are the most likely explanation for the patterns of dispersal observed in this fragmented population of amphibians.
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Affiliation(s)
- Yu Wang
- The Key Laboratory of Conservation Biology for Endangered Wildlife of the Ministry of Education, College of Life Sciences, Zhejiang University, Hangzhou, China
| | - Amanda Lane
- Faculty of Veterinary Science, University of Sydney, Sydney, New South Wales, Australia
| | - Ping Ding
- The Key Laboratory of Conservation Biology for Endangered Wildlife of the Ministry of Education, College of Life Sciences, Zhejiang University, Hangzhou, China
- * E-mail:
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Jones OR, Wang J. A comparison of four methods for detecting weak genetic structure from marker data. Ecol Evol 2012; 2:1048-55. [PMID: 22837848 PMCID: PMC3399169 DOI: 10.1002/ece3.237] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2012] [Revised: 02/10/2012] [Accepted: 02/13/2012] [Indexed: 11/21/2022] Open
Abstract
Genetic structure is ubiquitous in wild populations and is the result of the processes of natural selection, genetic drift, mutation, and gene flow. Genetic drift and divergent selection promotes the generation of genetic structure, while gene flow homogenizes the subpopulations. The ability to detect genetic structure from marker data diminishes rapidly with a decreasing level of differentiation among subpopulations. Weak genetic structure may be unimportant over evolutionary time scales but could have important implications in ecology and conservation biology. In this paper we examine methods for detecting and quantifying weak genetic structures using simulated data. We simulated populations consisting of two putative subpopulations evolving for up to 50 generations with varying degrees of gene flow (migration), and varying amounts of information (allelic diversity). There are a number of techniques available to detect and quantify genetic structure but here we concentrate on four methods: FST, population assignment, relatedness, and sibship assignment. Under the simple mating system simulated here, the four methods produce qualitatively similar results. However, the assignment method performed relatively poorly when genetic structure was weak and we therefore caution against using this method when the analytical aim is to detect fine-scale patterns. Further work should examine situations with different mating systems, for example where a few individuals dominate reproductive output of the population. This study will help workers to design their experiments (e.g., sample sizes of markers and individuals), and to decide which methods are likely to be most appropriate for their particular data.
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Ansmann IC, Parra GJ, Lanyon JM, Seddon JM. Fine-scale genetic population structure in a mobile marine mammal: inshore bottlenose dolphins in Moreton Bay, Australia. Mol Ecol 2012; 21:4472-85. [PMID: 22882348 DOI: 10.1111/j.1365-294x.2012.05722.x] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2011] [Accepted: 06/12/2012] [Indexed: 11/29/2022]
Abstract
Highly mobile marine species in areas with no obvious geographic barriers are expected to show low levels of genetic differentiation. However, small-scale variation in habitat may lead to resource polymorphisms and drive local differentiation by adaptive divergence. Using nuclear microsatellite genotyping at 20 loci, and mitochondrial control region sequencing, we investigated fine-scale population structuring of inshore bottlenose dolphins (Tursiops aduncus) inhabiting a range of habitats in and around Moreton Bay, Australia. Bayesian structure analysis identified two genetic clusters within Moreton Bay, with evidence of admixture between them (F(ST) = 0.05, P = 0.001). There was only weak isolation by distance but one cluster of dolphins was more likely to be found in shallow southern areas and the other in the deeper waters of the central northern bay. In further analysis removing admixed individuals, southern dolphins appeared genetically restricted with lower levels of variation (AR = 3.252, π = 0.003) and high mean relatedness (r = 0.239) between individuals. In contrast, northern dolphins were more diverse (AR = 4.850, π = 0.009) and were mixing with a group of dolphins outside the bay (microsatellite-based STRUCTURE analysis), which appears to have historically been distinct from the bay dolphins (mtDNA Φ(ST) = 0.272, P < 0.001). This study demonstrates the ability of genetic techniques to expose fine-scale patterns of population structure and explore their origins and mechanisms. A complex variety of inter-related factors including local habitat variation, differential resource use, social behaviour and learning, and anthropogenic disturbances are likely to have played a role in driving fine-scale population structure among bottlenose dolphins in Moreton Bay.
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Affiliation(s)
- Ina C Ansmann
- Marine Vertebrate Ecology Research Group, School of Biological Sciences, The University of Queensland, St Lucia, Qld, 4072, Australia.
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Colson KE, Brinkman TJ, Person DK, Hundertmark KJ. Fine-scale social and spatial genetic structure in Sitka black-tailed deer. CONSERV GENET 2012. [DOI: 10.1007/s10592-012-0388-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Nelson-Flower MJ, Hockey PAR, O’Ryan C, Ridley AR. Inbreeding avoidance mechanisms: dispersal dynamics in cooperatively breeding southern pied babblers. J Anim Ecol 2012; 81:876-83. [DOI: 10.1111/j.1365-2656.2012.01983.x] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Abstract
Sex-biased dispersal is expected to generate differences in the fine-scale genetic structure of males and females. Therefore, spatial analyses of multilocus genotypes may offer a powerful approach for detecting sex-biased dispersal in natural populations. However, the effects of sex-biased dispersal on fine-scale genetic structure have not been explored. We used simulations and multilocus spatial autocorrelation analysis to investigate how sex-biased dispersal influences fine-scale genetic structure. We evaluated three statistical tests for detecting sex-biased dispersal: bootstrap confidence intervals about autocorrelation r values and recently developed heterogeneity tests at the distance class and whole correlogram levels. Even modest sex bias in dispersal resulted in significantly different fine-scale spatial autocorrelation patterns between the sexes. This was particularly evident when dispersal was strongly restricted in the less-dispersing sex (mean distance <200 m), when differences between the sexes were readily detected over short distances. All tests had high power to detect sex-biased dispersal with large sample sizes (n ≥ 250). However, there was variation in type I error rates among the tests, for which we offer specific recommendations. We found congruence between simulation predictions and empirical data from the agile antechinus, a species that exhibits male-biased dispersal, confirming the power of individual-based genetic analysis to provide insights into asymmetries in male and female dispersal. Our key recommendations for using multilocus spatial autocorrelation analyses to test for sex-biased dispersal are: (i) maximize sample size, not locus number; (ii) concentrate sampling within the scale of positive structure; (iii) evaluate several distance class sizes; (iv) use appropriate methods when combining data from multiple populations; (v) compare the appropriate groups of individuals.
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Affiliation(s)
- Sam C Banks
- The Fenner School of Environment and Society, The Australian National University, Canberra, ACT 0200, Australia.
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Blair ME, Melnick DJ. Genetic evidence for dispersal by both sexes in the Central American Squirrel Monkey, Saimiri oerstedii citrinellus. Am J Primatol 2012; 74:37-47. [PMID: 22038889 DOI: 10.1002/ajp.21007] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2011] [Revised: 08/16/2011] [Accepted: 09/02/2011] [Indexed: 11/06/2022]
Abstract
Sex-biased dispersal (SBD) is common in many vertebrates, including primates. However, dispersal patterns in New World primates may vary among closely related taxa or populations in different local environments. Here, we test for SBD in an endangered New World primate, the Central American Squirrel Monkey (Saimiri oerstedii citrinellus). Previous studies of behavioral ecology suggest predominantly female dispersal in S.o. oerstedii in the Southern Pacific region of Costa Rica. However, our genetic data do not support strongly female-biased dispersal in S.o. citrinellus in the Central Pacific region. Our tests for SBD using microsatellite data including comparisons of isolation-by-distance, AI(c) , and F(ST) values between males and females were not significant. Also, we found greater population genetic structure in mitochondrial markers than in microsatellite markers, indicative of predominantly male dispersal. We conclude that both sexes disperse in S.o. citrinellus, and that males probably disperse over longer distances. We discuss how spatial and temporal variation among local populations should be taken into account when studying dispersal patterns and especially sex bias.
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Affiliation(s)
- M E Blair
- Department of Ecology, Evolution and Environmental Biology, Columbia University, New York, USA.
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Lane A, Shine R. Intraspecific variation in the direction and degree of sex-biased dispersal among sea-snake populations. Mol Ecol 2011; 20:1870-6. [PMID: 21418112 DOI: 10.1111/j.1365-294x.2011.05059.x] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Higher rates of dispersal in one sex than the other are widespread, and often attributed to the genetic advantages of reduced inbreeding. The direction of sex-biased dispersal shows strong phylogenetic conservatism (e.g. males disperse more than females in most mammals, but the reverse is true in most birds). By contrast, our genetic data reveal strong inter-population variation in the relative dispersal rates of two species of sea snakes (Laticauda saintgironsi and L. laticaudata) in the Noumea Lagoon of New Caledonia. Assignment methods using microsatellite data identified parallel variation in sex-specific dispersal in both species: dispersal was female-biased in the north-west of the sampling area (in islands far from the main island), but male-biased in the south-east (in islands closer to the main island). This flexibility may reflect sex differences in diets, with spatial variation in sex-specific resources generating spatial variation in sex-specific dispersal distances.
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Affiliation(s)
- Amanda Lane
- School of Biological Sciences A08, University of Sydney, Sydney, NSW 2006, Australia
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Morrogh-Bernard HC, Morf NV, Chivers DJ, Krützen M. Dispersal Patterns of Orang-utans (Pongo spp.) in a Bornean Peat-swamp Forest. INT J PRIMATOL 2010. [DOI: 10.1007/s10764-010-9474-7] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Blackmore CJ, Peakall R, Heinsohn R. The absence of sex-biased dispersal in the cooperatively breeding grey-crowned babbler. J Anim Ecol 2010; 80:69-78. [PMID: 21054379 DOI: 10.1111/j.1365-2656.2010.01761.x] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
1. Cooperatively breeding birds are thought to be especially vulnerable to habitat fragmentation, in part because dispersal is typically restricted for one sex, increasing the likelihood of inbreeding. Knowledge of dispersal is essential to conservation efforts, but is often hampered by our inability to measure its frequency and distance when dispersal is infrequent and difficult to observe. 2. Disrupted dispersal is a purported cause of decline in the Australian grey-crowned babbler (Pomatostomus temporalis). Both sexes of offspring delay dispersal for up to several years to help parents raise subsequent broods, yet little else is known about the dispersal of this cooperatively breeding woodland bird. 3. As both sexes appear to help, but only male helpers boost fledgling production, we hypothesized that males would be the more philopatric sex in this species, and that female grey-crowned babblers would disperse over greater distances. 4. To ensure reliable determination of sex and minimize bias towards detecting short-distance dispersal events, we combined molecular-based sexing and analyses of population genetic structure using polymorphic microsatellite loci with observational data obtained over multiple field seasons. 5. Observations of banded birds showed only infrequent fission of groups or short-distance dispersal (mean=854 m), but no apparent sex-bias in these patterns. 6. There was significant genetic differentiation between social groups, but not between the sexes. Spatial genetic autocorrelation analysis of breeders revealed a random distribution of genotypes across the study area for both sexes. Thus, contrary to expectations, we found no genetic evidence for restricted dispersal or for sex-biased dispersal over the 85-km scale of this study, indicating that effective dispersal occurs over greater distances and more frequently than recoveries of banded birds indicated. 7. We conclude that while constraints on independent breeding encourage high rates of philopatry, incest avoidance nonetheless drives high rates of dispersal by both sexes. In fragmented habitat, the dispersal dynamics of this cooperatively breeding species are unlikely to render them particularly vulnerable to genetic consequences such as inbreeding, but may lead to increased group dissolution.
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Affiliation(s)
- Caroline J Blackmore
- The Fenner School of Environment and Society, The Australian National University, Canberra ACT 0200, Australia.
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Anderson CS, Meikle DB. Genetic estimates of immigration and emigration rates in relation to population density and forest patch area in Peromyscus leucopus. CONSERV GENET 2010. [DOI: 10.1007/s10592-009-0033-8] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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46
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Fisher DO, Nuske S, Green S, Seddon JM, McDonald B. The evolution of sociality in small, carnivorous marsupials: the lek hypothesis revisited. Behav Ecol Sociobiol 2010. [DOI: 10.1007/s00265-010-1060-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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47
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Estes-Zumpf WA, Rachlow JL, Waits LP, Warheit KI. Dispersal, gene flow, and population genetic structure in the pygmy rabbit (Brachylagus idahoensis). J Mammal 2010. [DOI: 10.1644/09-mamm-a-032r.1] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
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Lagisz M, Wolff K, Sanderson RA, Laskowski R. Genetic population structure of the ground beetle, Pterostichus oblongopunctatus, inhabiting a fragmented and polluted landscape: evidence for sex-biased dispersal. JOURNAL OF INSECT SCIENCE (ONLINE) 2010; 10:105. [PMID: 20874392 PMCID: PMC3016886 DOI: 10.1673/031.010.10501] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/09/2008] [Accepted: 04/04/2009] [Indexed: 05/29/2023]
Abstract
Ground beetles are an integral and functionally important part of many terrestrial ecosystems. Habitat change often influences population genetic structure of carabid beetles. In this study, genetic variation, population differentiation, and sex-specific dispersal patterns were studied in the forest ground beetle, Pterostichus oblongopunctatus F. (Coleoptera: Carabidae), in a fragmented and metal-polluted landscape to assess the consequences of human-induced changes on the population genetic structure. Genotypic variation at five microsatellite loci was screened in 309 beetles from 21 sample locations around zinc-and-lead smelter in southern Poland. Low levels of genetic differentiation among sampling sites were observed, suggesting high gene flow among populations. A negative correlation was found between levels of genetic differentiation and habitat patch size. No significant effects of metal pollution, in terms of genetic bottlenecks and genetic differentiation, were observed. Analyses revealed weak genetic clustering that is loosely tied to the geographic position of the sampled populations. Several tests of sex-biased dispersal were conducted. Most of them indicated male-biased dispersal. Differing levels of dispersal between females and males resulted in sex-specific spatial genetic patterns. Genetic differentiation was significantly correlated with geographical distance for males, but not for females, who were more diverged locally. Also, the effect of habitat patch size was sex-dependent, supporting the finding of different dispersal patterns between the sexes. This study demonstrated the application of microsatellite markers to answer questions regarding complex interactions between population structure and physical properties of the landscape. In the study system, migration appears to be sufficient to override potential effects of environmental pollution as well as habitat fragmentation. This investigation of population genetic structure indicated, for the first time, male-biased dispersal in carabid beetles.
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Affiliation(s)
- Malgorzata Lagisz
- Institute of Environmental Sciences, Jagiellonian University, 31-202 Kraków, Poland.
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Hall LA, Palsbøll PJ, Beissinger SR, Harvey JT, Bérubé M, Raphael MG, Nelson SK, Golightly RT, McFarlane-Tranquilla L, Newman SH, Peery MZ. Characterizing dispersal patterns in a threatened seabird with limited genetic structure. Mol Ecol 2009; 18:5074-85. [PMID: 19912540 DOI: 10.1111/j.1365-294x.2009.04416.x] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Genetic assignment methods provide an appealing approach for characterizing dispersal patterns on ecological time scales, but require sufficient genetic differentiation to accurately identify migrants and a large enough sample size of migrants to, for example, compare dispersal between sexes or age classes. We demonstrate that assignment methods can be rigorously used to characterize dispersal patterns in a marbled murrelet (Brachyramphus marmoratus) population from central California that numbers approximately 600 individuals and is only moderately differentiated (F(ST) approximately 0.03) from larger populations to the north. We used coalescent simulations to select a significance level that resulted in a low and approximately equal expected number of type I and II errors and then used this significance level to identify a population of origin for 589 individuals genotyped at 13 microsatellite loci. The proportion of migrants in central California was greatest during winter when 83% of individuals were classified as migrants compared to lower proportions during the breeding (6%) and post-breeding (8%) seasons. Dispersal was also biased toward young and female individuals, as is typical in birds. Migrants were rarely members of parent-offspring pairs, suggesting that they contributed few young to the central California population. A greater number of migrants than expected under equilibrium conditions, a lack of individuals with mixed ancestry, and a small number of potential source populations (two), likely allowed us to use assignment methods to rigorously characterize dispersal patterns for a population that was larger and less differentiated than typically thought required for the identification of migrants.
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Pérez-González J, Carranza J. Female-biased dispersal under conditions of low male mating competition in a polygynous mammal. Mol Ecol 2009; 18:4617-30. [PMID: 19840261 DOI: 10.1111/j.1365-294x.2009.04386.x] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Sex-biased dispersal is a common phenomenon in birds and mammals. Competition for mates has been argued to be an important selective pressure favouring dispersal. Sexual differences in the level of intrasexual competition may produce asymmetries in the costs-benefits balance of dispersal and philopatry for males and females, which may favour male-biased dispersal in polygynous species such as most mammals. This being the case, condition-dependent dispersal predicts that male-bias should decrease if mating competition relaxes. We test this expectation for red deer, where male-biased dispersal is the norm. In southwestern Spain, red deer populations located in nonfenced hunting estates presented altered structures with sex ratio strongly biased to females and high proportion of young males. As a consequence, mate competition in these populations was lower than in other, most typical red deer populations. We found that, under such conditions of altered population structure, dispersal was female-biased rather than male-biased. Additionally, mate competition positively related to male dispersal but negatively to female dispersal. Other factors such as resource competition, age of individuals and sex ratio were not related to male or female dispersal. Males may not disperse if intrasexual competition is low and then females may disperse as a response to male philopatry. We propose hypotheses related to female mate choice to explain female dispersal under male philopatry. The shift of the sex-biased dispersal pattern along the gradient of mate competition highlights its condition-dependence as well as the interaction between male and female dispersal in the evolution of sex-biased dispersal.
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Affiliation(s)
- J Pérez-González
- Biology and Ethology, University of Extremadura, 10071 Cáceres, Spain.
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