Haemonchotolerance in West African Dwarf goats: contribution to sustainable, anthelmintics-free helminth control in traditionally managed Nigerian dwarf goats

Search for Selection Signatures Related to Trypanosomosis Tolerance in African Goats

Livestock is heavily affected by trypanosomosis in Africa. Through strong selective pressure, several African indigenous breeds of cattle and small ruminants have acquired varying degrees of tolerance against this disease. In this study, we combined LFMM and PCAdapt for analyzing two datasets of goats from West-Central Africa and East Africa, respectively, both comprising breeds with different assumed levels of trypanotolerance. The objectives were (i) to identify molecular signatures of selection related to trypanotolerance; and (ii) to guide an optimal sampling for subsequent studies. From 33 identified signatures, 18 had been detected previously in the literature as being mainly associated with climatic adaptations. The most plausible signatures of trypanotolerance indicate the genes DIS3L2, COPS7B, PD5A, UBE2K, and UBR1. The last gene is of particular interest since previous literature has already identified E3-ubiquitin ligases as playing a decisive role in the immune response. For following-up on these findings, the West-Central African area appears particularly relevant because of (i) a clear parasitic load gradient related to a humidity gradient, and (ii) still restricted admixture levels between goat breeds. This study illustrates the importance of protecting local breeds, which have retained unique allelic combinations conferring their remarkable adaptations.

Gastrointestinal Nematodes of Goats: Host-parasite Relationship Differences in Breeds at Summer Mountain Pasture in Northern Italy

Introduction

The Orobic goat is a hardy breed native to the Orobic Alps (Lombardy, northern Italy). The aim of the study was the assessment of gastrointestinal nematode (GIN) egg excretion in Alpine and Saanen (cosmopolite breeds) and Orobic grazing goats, after a strategic treatment with eprinomectin in late June.

Material and Methods

Individual faecal samples from a mixed flock of cosmopolite and Orobic goats were collected and analysed by the FLOTAC double technique every three weeks from June to September.

Results

Strongylida was the primary GIN infection observed in goats that grazed on Alpine pastures; a strategic treatment with eprinomectin led to a prolonged reduction of egg excretion during the whole study period. Egg excretion was also influenced by breed. Pluriparous Orobic does were able to control reinfection better than the pluriparous cosmopolite does. Regarding Nematodirus sp. eggs per gram of faeces (EPG), the autochthonous Orobic breed presented higher values than the cosmopolite breeds. However, cosmopolite goats presented higher EPG values of Strongyloides papillosus than their Orobic counterparts in August.

Conclusions

Further studies on genetic features of local autochthonous goats, such as the Orobic breed, are needed, since they could reveal peculiar characteristics of susceptibility, resistance or resilience to GIN infection, providing genetic resources for selection.

Phenotypic resistance of indigenous goat breeds to infection with Haemonchus contortus in northwestern Nigeria

Two studies at the National Animal Production Research Institute (NAPRI), Zaria, Nigeria, compared Red Sokoto (RS), Sahelian (SG), and West African Dwarf (WAD) goats after experimental or natural infection with Haemonchus contortus. In the first study, 20 RS, 17 SG, and 14 WAD kids were challenged at 6 months of age with 5000 L₃ larvae of H. contortus. Fecal egg counts (FEC), packed cell volumes (PCV), and body weights (BW) were recorded 0, 28, 35, and 42 days after infection. The FEC and PCV were affected only by time of measurement. In the second study, 322 RS and 97 SG kids were produced at NAPRI over 3 years, weaned at 4 to 6 months of age, dewormed, returned to contaminated pastures, and evaluated 28 and 35 days later. Effects of breed, year, breed × time interaction, and breed × year interaction were observed for PCV and BW; FEC was only affected by time of measurement, year and breed × year interaction. The FEC were larger and PCV were smaller on day 35 compared to day 28 and in year 2 compared to years 1 and 3. The SG kids were notably smaller than RS kids in year 2, with higher FEC and lower PCV, but FEC were larger for RS kids in years 1 and 3. Differences in parasite resistance among these Nigerian goat breeds were therefore small and likely reflected underlying differences in growth, development, and disease history.

Genome-wide diversity and demographic dynamics of Cameroon goats and their divergence from east African, north African, and Asian conspecifics

Indigenous goats make significant contributions to Cameroon’s national and local economy, but little effort has been devoted to identifying the populations. Here, we assessed the genetic diversity and demographic dynamics of Cameroon goat populations using mitochondrial DNA (two populations) and autosomal markers (four populations) generated with the Caprine 50K SNP chip. To infer genetic relationships at continental and global level, genotype data on six goat populations from Ethiopia and one population each from Egypt, Morocco, Iran, and China were included in the analysis. The mtDNA analysis revealed 83 haplotypes, all belonging to haplogroup A, in Cameroon goats. Four haplotypes were shared between goats found in Cameroon, Mozambique, Namibia, Zimbabwe, Kenya, and Ethiopia. Analysis of autosomal SNPs in Cameroon goats revealed the lowest H_O (0.335±0.13) and H_E (0.352±0.15) in the North-west Highland and Central Highland populations, respectively. Overall, the highest H_O (0.401±0.12) and H_E (0.422±0.12) were found for Barki and Iranian goats, respectively. Barki goats had the highest average MAF, while Central Highland Cameroon goats had the lowest. Overall, Cameroon goats demonstrated high F_IS. AMOVA revealed that 13.29% of the variation was explained by genetic differences between the six population groups. Low average F_ST (0.01) suggests intermixing among Cameroon goats. All measures indicated that Cameroon goats are closer to Moroccan goats than to other goat populations. PCA and STRUCTURE analyses poorly differentiated the Cameroon goats, as did genetic distance, Neighbor-Net network, and neighbor-joining tree analyses. The haplotype analysis of mtDNA showed the initial dispersion of goats to Cameroon and central Africa from north-east Africa following the Nile Delta. Whereas, the approximate Bayesian computation indicated Cameroon goats were separated from Moroccan goats after 506 generations in later times (~1518 YA), as supported by the phylogenetic net-work and admixture outputs. Overall, indigenous goats in Cameroon show weak phylogenetic structure, suggesting either extensive intermixing.

Genetic Improvement in South African Livestock: Can Genomics Bridge the Gap Between the Developed and Developing Sectors?

South Africa (SA) holds a unique position on the African continent with a rich diversity in terms of available livestock resources, vegetation, climatic regions and cultures. The livestock sector has been characterized by a dual system of a highly developed commercial sector using modern technology vs. a developing sector including emerging and smallholder farmers. Emerging farmers typically aim to join the commercial sector, but lag behind with regard to the use of modern genetic technologies, while smallholder farmers use traditional practices aimed at subsistence. Several factors influence potential application of genomics by the livestock industries, which include available research funding, socio-economic constraints and extension services. State funded Beef and Dairy genomic programs have been established with the aim of building reference populations for genomic selection with most of the potential beneficiaries in the well-developed commercial sector. The structure of the beef, dairy and small stock industries is fragmented and the outcomes of selection strategies are not perceived as an advantage by the processing industry or the consumer. The indigenous and local composites represent approximately 40% of the total beef and sheep populations and present valuable genetic resources. Genomic research has mostly provided insight on genetic biodiversity of these resources, with limited attention to novel phenotypes associated with adaptation or disease tolerance. Genetic improvement of livestock through genomic technology needs to address the role of adapted breeds in challenging environments, increasing reproductive and growth efficiency. National animal recording schemes contributed significantly to progress in the developed sector with regard to genetic evaluations and estimated breeding values (EBV) as a selection tool over the past three decades. The challenge remains on moving the focus to novel traits for increasing efficiency and addressing welfare and environmental issues. Genetic research programs are required that will be directed to bridge the gap between the elite breeders and the developing livestock sector. The aim of this review was to provide a perspective on the dichotomy in the South African livestock sector arguing that a realistic approach to the use of genomics in beef, dairy and small stock is required to ensure sustainable long term genetic progress.

Interactions between gastrointestinal parasitism and pneumonia in Nigerian goats

This study was carried out to determine the burden and interactions between parasitism and pneumonia in Nigerian goats. A total of 430 goats were examined for gastrointestinal (GIT) parasites by faecal analysis using sedimentation by gravity, Modified Winconsin sugar floatation method, McMaster egg counting techniques and for lung consolidation, pathology and morphometry of pneumonia were evaluated by standard techniques. The results from the faecal examination revealed the presence of nine (9) gastrointestinal parasites namely Eimeria, Trichuris, Oesophagostomum, Strongyloides, Moniezia, Haemonchus, Bunostomum, Trichostrongylus, and Nematodirus species and at an overall high prevalence of 74%. Eimeria species was found to have the highest prevalence of 26% for single infection, while co-infection of Eimeria and Trichuris species 21% was highest amongst other parasites, and of the breeds of goats examined for GIT parasites, the Red Sokoto (RS) breed had the highest infection rate 37%. The results from the lungs analysis showed 59% prevalence with the highest consolidation in RS (48.2%), followed by WAD (34.2%). The age of the goats was key in the infection rate of both parasites and pneumonia, which was seen to be highest in younger goats, with a significant (2.10 ± 0.4 × 10³) GI parasite burden in >1-2 years group. The prevalence of GIT infection with lung consolidation in the goats, was observed to influence their Body condition scores (BCS) (p < 0.05). This study showed that body condition score, age and breed of goats may be predisposing factors to gastrointestinal parasites and pneumonia in Nigerian goats. There was a strong correlation (+0.243, p = 0.00) of occurrence of gastrointestinal parasitism and pneumonia in this study. Possibility of combined prophylactic measures should be considered in the nearest future.