1
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Schatz GC, Wodtke AM, Yang X. Spiers Memorial Lecture: New directions in molecular scattering. Faraday Discuss 2024; 251:9-62. [PMID: 38764350 DOI: 10.1039/d4fd00015c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/21/2024]
Abstract
The field of molecular scattering is reviewed as it pertains to gas-gas as well as gas-surface chemical reaction dynamics. We emphasize the importance of collaboration of experiment and theory, from which new directions of research are being pursued on increasingly complex problems. We review both experimental and theoretical advances that provide the modern toolbox available to molecular-scattering studies. We distinguish between two classes of work. The first involves simple systems and uses experiment to validate theory so that from the validated theory, one may learn far more than could ever be measured in the laboratory. The second class involves problems of great complexity that would be difficult or impossible to understand without a partnership of experiment and theory. Key topics covered in this review include crossed-beams reactive scattering and scattering at extremely low energies, where quantum effects dominate. They also include scattering from surfaces, reactive scattering and kinetics at surfaces, and scattering work done at liquid surfaces. The review closes with thoughts on future promising directions of research.
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Affiliation(s)
- George C Schatz
- Dept of Chemistry, Northwestern University, Evanston, Illinois 60208, USA
| | - Alec M Wodtke
- Institute for Physical Chemistry, Georg August University, Goettingen, Germany
- Max Planck Institute for Multidisciplinary Natural Sciences, Goettingen, Germany.
- International Center for the Advanced Studies of Energy Conversion, Georg August University, Goettingen, Germany
| | - Xueming Yang
- Dalian Institute for Chemical Physics, Chinese Academy of Sciences, Dalian, China
- Department of Chemistry, College of Science, Southern University of Science and Technology, Shenzhen, China
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2
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Rangel C, Espinosa-Garcia J. Theoretical study of the O( 3P) + SiH 4 reaction: global potential energy surface, kinetics and dynamics study. Phys Chem Chem Phys 2022; 24:9735-9742. [PMID: 35412544 DOI: 10.1039/d2cp00524g] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In order to understand the gas-phase hydrogen abstraction reaction between O(3P) and silane we began by developing the first full-dimensional analytical potential energy surface, named PES-2022. It is basically a valence bond function augmented with molecular mechanic terms describing in an intuitive way stretching and bending nuclei motions, and it is fitted to high level ab initio calculations. The surface presents continuous and smooth behaviour, with analytical first energy derivatives, on which the hydrogen atoms in silane are permutationally symmetric. Based on PES-2022, a kinetics study was performed using the variational transition-state theory with multidimensional tunnelling corrections in the temperature range of 300-1000 K. We observed that experimental and theoretical results show widely spread results, both in absolute value and temperature dependence, possibly because they include the reactivity from both O(3P) and O(1D) electronic states, which present different mechanisms and multiple channels. When the comparison is performed on the same footing, O(3P) + SiH4 → HO + SiH3, the present results agree with Ding and Marshall's experiments and with Zhang et al.'s theoretical rate constants. The kinetic isotope effects (KIEs) reproduced the only experimental value, improving previous theoretical results. Finally, a dynamics study was performed on PES-2022 using quasi-classical trajectory calculations under two different initial conditions, at fixed room temperature and at a fixed collision energy of 8.0 kcal mol-1. In the first case, the available energy deposited as HO(v) vibration was 47%, with population inversion, P(v = 0)/P(v = 1) = 11/89%, reproducing the experimental evidence. In the second case, the experimental product translational distribution was reasonably simulated, while the angular product distribution presented opposite behaviour, backward versus forward. On analysing this discrepancy, we found that while in the present work the O(3P) + SiH4 reaction was reported, in the experiment both O(3P) and O(1D) electronic states are reported. So, the comparison was not performed on the same footing. In sum, agreement of the present results with experiments permits us to be reasonably optimistic about the quality and accuracy of the new PES, and at the same time to highlight the fact that theory/experiment comparisons must be performed on the same footing.
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Affiliation(s)
- C Rangel
- Área de Química Física and Instituto de Computación Científica Avanzada, Universidad de Extremadura, 06071 Badajoz, Spain.
| | - J Espinosa-Garcia
- Área de Química Física and Instituto de Computación Científica Avanzada, Universidad de Extremadura, 06071 Badajoz, Spain.
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3
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Three body photodissociation of the water molecule and its implications for prebiotic oxygen production. Nat Commun 2021; 12:2476. [PMID: 33931653 PMCID: PMC8087761 DOI: 10.1038/s41467-021-22824-7] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2020] [Accepted: 04/01/2021] [Indexed: 11/20/2022] Open
Abstract
The provenance of oxygen on the Earth and other planets in the Solar System is a fundamental issue. It has been widely accepted that the only prebiotic pathway to produce oxygen in the Earth’s primitive atmosphere was via vacuum ultraviolet (VUV) photodissociation of CO2 and subsequent two O atom recombination. Here, we provide experimental evidence of three-body dissociation (TBD) of H2O to produce O atoms in both 1D and 3P states upon VUV excitation using a tunable VUV free electron laser. Experimental results show that the TBD is the dominant pathway in the VUV H2O photochemistry at wavelengths between 90 and 107.4 nm. The relative abundance of water in the interstellar space with its exposure to the intense VUV radiation suggests that the TBD of H2O and subsequent O atom recombination should be an important prebiotic O2-production, which may need to be incorporated into interstellar photochemical models. Three-body dissociation of water, producing one oxygen and two hydrogen atoms, has been difficult to investigate due to the lack of intense vacuum ultraviolet sources. Here, using a tunable free-electron laser, the authors obtain quantum yields for this channel showing that it is a possible route to prebiotic oxygen formation in interstellar environments.
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4
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Li H, Suits AG. Universal crossed beam imaging studies of polyatomic reaction dynamics. Phys Chem Chem Phys 2020; 22:11126-11138. [DOI: 10.1039/d0cp00522c] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Crossed-beam imaging studies of polyatomic reactions show surprising dynamics not anticipated by extrapolation from smaller model systems.
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Affiliation(s)
- Hongwei Li
- Department of Chemistry
- University of Missouri
- Columbia
- USA
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5
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Sulfuric acid decomposition chemistry above Junge layer in Earth's atmosphere concerning ozone depletion and healing. Commun Chem 2019. [DOI: 10.1038/s42004-019-0178-4] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022] Open
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6
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Nuñez-Reyes D, Hickson KM. Rate Constants and H-Atom Product Yields for the Reactions of O(1D) Atoms with Ethane and Acetylene from 50 to 296 K. J Phys Chem A 2018; 122:4696-4703. [DOI: 10.1021/acs.jpca.8b02267] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Dianailys Nuñez-Reyes
- Université de Bordeaux, Institut des Sciences Moléculaires, F-33400 Talence, France
- CNRS, Institut des Sciences Moléculaires, F-33400 Talence, France
| | - Kevin M. Hickson
- Université de Bordeaux, Institut des Sciences Moléculaires, F-33400 Talence, France
- CNRS, Institut des Sciences Moléculaires, F-33400 Talence, France
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7
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Ghosh S, Mandal M, Maiti B. Dynamics of the O( 3 P, 1 D) + SiH 4 reaction: A trajectory surface hopping study. Chem Phys Lett 2017. [DOI: 10.1016/j.cplett.2017.10.040] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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8
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Malbon CL, Yarkony DR. Multistate, multichannel coupled diabatic state representations of adiabatic states coupled by conical intersections. CH2OH photodissociation. J Chem Phys 2017; 146:134302. [DOI: 10.1063/1.4978708] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
| | - David R. Yarkony
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, USA
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9
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Pan H, Liu K, Caracciolo A, Casavecchia P. Crossed beam polyatomic reaction dynamics: recent advances and new insights. Chem Soc Rev 2017; 46:7517-7547. [DOI: 10.1039/c7cs00601b] [Citation(s) in RCA: 57] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This review summarizes the developments in polyatomic reaction dynamics, focusing on reactions of unsaturated hydrocarbons with O-atoms and methane with atoms/radicals.
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Affiliation(s)
- Huilin Pan
- Institute of Atomic and Molecular Sciences (IAMS)
- Academia Sinica
- Taipei
- Taiwan
| | - Kopin Liu
- Institute of Atomic and Molecular Sciences (IAMS)
- Academia Sinica
- Taipei
- Taiwan
- Department of Physics
| | - Adriana Caracciolo
- Dipartimento di Chimica
- Biologia e Biotecnologie
- Università degli Studi di Perugia
- 06123 Perugia
- Italy
| | - Piergiorgio Casavecchia
- Dipartimento di Chimica
- Biologia e Biotecnologie
- Università degli Studi di Perugia
- 06123 Perugia
- Italy
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10
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Meng Q, Hickson KM, Shao K, Loison JC, Zhang DH. Theoretical and experimental investigations of rate coefficients of O(1D) + CH4 at low temperature. Phys Chem Chem Phys 2016; 18:29286-29292. [DOI: 10.1039/c6cp05517f] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The O(1D) + CH4 rates from RPMD and VUV-LIF are close to each other in the temperature range of the atmosphere.
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Affiliation(s)
- Qingyong Meng
- Department of Applied Chemistry
- Northwestern Polytechnical University
- 710072 Xi'an
- China
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry
| | - Kevin M. Hickson
- CNRS UMR 5255
- Institut des Sciences Moléculaires
- Université de Bordeaux
- F-33400 Talence
- France
| | - Kejie Shao
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences
- 116023 Dalian
- China
| | - Jean-Christophe Loison
- CNRS UMR 5255
- Institut des Sciences Moléculaires
- Université de Bordeaux
- F-33400 Talence
- France
| | - Dong H. Zhang
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences
- 116023 Dalian
- China
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11
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Shao KJ, Fu BN, Zhang DH. Quasiclassical Trajectory Study of the Reaction of CD4 with O(1D). CHINESE J CHEM PHYS 2015. [DOI: 10.1063/1674-0068/28/cjcp1507152] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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12
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Rotational spectral studies of O(1D) insertion reactions with methane and ethylene: Methanol and vinyl alcohol in a supersonic expansion. Chem Phys Lett 2015. [DOI: 10.1016/j.cplett.2015.04.011] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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13
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Nguyen TL, Stanton JF. A Steady-State Approximation to the Two-Dimensional Master Equation for Chemical Kinetics Calculations. J Phys Chem A 2015; 119:7627-36. [DOI: 10.1021/acs.jpca.5b00997] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Thanh Lam Nguyen
- Department
of Chemistry, The University of Texas at Austin, Mail Stop A5300, Austin, Texas 78712-0165, United States
| | - John F. Stanton
- Department
of Chemistry, The University of Texas at Austin, Mail Stop A5300, Austin, Texas 78712-0165, United States
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14
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Shao K, Fu B, Zhang DH. A global full-dimensional potential energy surface and quasiclassical trajectory study of the O(1D) + CH4 multichannel reaction. Phys Chem Chem Phys 2015; 17:24098-107. [DOI: 10.1039/c5cp04278j] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The QCT calculations based on an accurate global full-dimensional PES are capable of reproducing the experimental dynamic features for O(1D) + CH4.
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Affiliation(s)
- Kejie Shao
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences
- Dalian
- P. R. China 116023
| | - Bina Fu
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences
- Dalian
- P. R. China 116023
| | - Dong H. Zhang
- State Key Laboratory of Molecular Reaction Dynamics and Center for Theoretical and Computational Chemistry
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences
- Dalian
- P. R. China 116023
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15
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Yang J, Shao K, Zhang D, Shuai Q, Fu B, Zhang DH, Yang X. Trapped Abstraction in the O((1)D) + CHD3 → OH + CD3 Reaction. J Phys Chem Lett 2014; 5:3106-3111. [PMID: 26276320 DOI: 10.1021/jz5016923] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Despite significant progress made in past decades, it is still challenging to elucidate dynamics mechanisms for polyatomic reactions, in particular, involving complex formation. The reaction of O((1)D) with methane has long been regarded as a prototypical polyatomic system of direct insertion reaction in which the O((1)D) atom can insert into the C-H bond of methane to form a "hot" methanol intermediate before decomposition. Here, we report a combined theoretical and experimental study on the O((1)D) + CHD3 reaction, on which good agreement between theory and experiment is achieved. Our study revealed that this complex-forming reaction actually proceeds via a trapped abstraction mechanism, rather than an insertion mechanism as has long been thought. We anticipate that this reaction mechanism should also be responsible for the reaction of O((1)D) with ethane and propane, as well as many other chemical reactions with deep wells in the interaction region.
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Affiliation(s)
- Jiayue Yang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Kejie Shao
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Dong Zhang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Quan Shuai
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Bina Fu
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Dong H Zhang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
| | - Xueming Yang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China
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16
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Ben Bouchrit R, Jorfi M, Ben Abdallah D, Jaidane N, González M, Bussery-Honvault B, Honvault P. Quantum dynamical study of the O(1D) + CH4→ CH3+ OH atmospheric reaction. J Chem Phys 2014; 140:244315. [DOI: 10.1063/1.4885276] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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17
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Pan H, Yang J, Zhang D, Shuai Q, Dai D, Wu G, Jiang B, Yang X. Effect of antisymmetric C–H stretching excitation on the dynamics of O(1D) + CH4 → OH + CH3. J Chem Phys 2014. [DOI: 10.1063/1.4871135] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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18
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Rodrigo CP, Zhou C, Reisler H. Accessing Multiple Conical Intersections in the 3s and 3px Photodissociation of the Hydroxymethyl Radical. J Phys Chem A 2013; 117:12049-59. [DOI: 10.1021/jp404552g] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Chirantha P. Rodrigo
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482,
United States
| | - Chuanchuan Zhou
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482,
United States
| | - Hanna Reisler
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482,
United States
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19
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Leonori F, Skouteris D, Petrucci R, Casavecchia P, Rosi M, Balucani N. Combined crossed beam and theoretical studies of the C(1D) + CH4 reaction. J Chem Phys 2013; 138:024311. [DOI: 10.1063/1.4773579] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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20
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Suzuki T. Visualization of chemical reaction dynamics: toward understanding complex polyatomic reactions. PROCEEDINGS OF THE JAPAN ACADEMY. SERIES B, PHYSICAL AND BIOLOGICAL SCIENCES 2013; 89:1-15. [PMID: 23318678 PMCID: PMC3610866 DOI: 10.2183/pjab.89.1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/29/2012] [Accepted: 10/12/2012] [Indexed: 06/01/2023]
Abstract
Polyatomic molecules have several electronic states that have similar energies. Consequently, their chemical dynamics often involve nonadiabatic transitions between multiple potential energy surfaces. Elucidating the complex reactions of polyatomic molecules is one of the most important tasks of theoretical and experimental studies of chemical dynamics. This paper describes our recent experimental studies of the multidimensional multisurface dynamics of polyatomic molecules based on two-dimensional ion/electron imaging. It also discusses ultrafast photoelectron spectroscopy of liquids for elucidating nonadiabatic electronic dynamics in aqueous solutions. (Communicated by Hiroo INOKUCHI, M.J.A.)
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Affiliation(s)
- Toshinori Suzuki
- Department of Chemistry, Graduate School of Science, Kyoto University.
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21
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Ogi Y, Kohguchi H, Suzuki T. Deuterium isotope effects in the polyatomic reaction of O(1D2) + CH4 → OH + CH3. Phys Chem Chem Phys 2013; 15:12946-57. [DOI: 10.1039/c3cp51680f] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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22
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Imaging the O(1D) + CD4 → OD + CD3 reaction dynamics: Probing vibrationally and rotationally excited CD3 products. J Chem Phys 2012; 137:224301. [DOI: 10.1063/1.4767397] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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23
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Shuai Q, Pan H, Yang J, Zhang D, Jiang B, Dai D, Yang X. Imaging the O((1)D) + CD4 → OD + CD3 Reaction Dynamics: The Threshold of Abstraction Pathway. J Phys Chem Lett 2012; 3:1310-1314. [PMID: 26286775 DOI: 10.1021/jz300453f] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
The O((1)D) + CD4 → OD + CD3 reaction was investigated using the crossed molecular beam technique with sliced velocity map imaging at four different collision energies: 1.6, 2.8, 4.6, and 6.8 kcal/mol. The vibrational ground state product CD3 was detected using a (2 + 1) resonance-enhanced multiphoton ionization (REMPI). Remarkably different features were found in the forward and backward scatterings, and gradually changed with the collision energy. These features were attributed to two distinctive reaction mechanisms-insertion and abstraction-that occur on the ground and excited state surfaces, respectively. Contributions from the two mechanisms were extracted from the experiment results, and a positive correlation was found between the abstraction proportion and the collision energy. The threshold for the abstraction pathway was determined and compared with results from calculations.
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Affiliation(s)
- Quan Shuai
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning 116023, P. R. China
| | - Huilin Pan
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning 116023, P. R. China
| | - Jiayue Yang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning 116023, P. R. China
| | - Dong Zhang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning 116023, P. R. China
| | - Bo Jiang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning 116023, P. R. China
| | - Dongxu Dai
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning 116023, P. R. China
| | - Xueming Yang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning 116023, P. R. China
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24
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Kamarchik E, Rodrigo C, Bowman JM, Reisler H, Krylov AI. Overtone-induced dissociation and isomerization dynamics of the hydroxymethyl radical (CH2OH and CD2OH). I. A theoretical study. J Chem Phys 2012; 136:084304. [DOI: 10.1063/1.3685891] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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25
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Laganà A, Garcia E, Paladini A, Casavecchia P, Balucani N. The last mile of molecular reaction dynamics virtual experiments: the case of the OH(N = 1–10) + CO(j = 0–3) reaction. Faraday Discuss 2012; 157:415-36; discussion 475-500. [DOI: 10.1039/c2fd20046e] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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26
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Xiao CF, Shen GL, Wang XY, Yang XM. Crossed Beams Study on the Dynamics of Cl Atom Reaction with Silane. CHINESE J CHEM PHYS 2011. [DOI: 10.1088/1674-0068/24/01/4-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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27
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Kohguchi H, Ogi Y, Suzuki T. Rovibrational state specific scattering distributions of the O(1D) + CD4→ OD + CD3 (v1, v2, N) reaction. Phys Chem Chem Phys 2011; 13:8371-8. [PMID: 21311786 DOI: 10.1039/c0cp01760d] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Affiliation(s)
- Hiroshi Kohguchi
- Chemical Dynamics Laboratory, RIKEN, Hirosawa 2-1, Wako 351-0198, Japan.
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28
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Berteloite C, Le Picard SD, Sims IR, Rosi M, Leonori F, Petrucci R, Balucani N, Wang X, Casavecchia P. Low temperature kinetics, crossed beam dynamics and theoretical studies of the reaction S(1D) + CH4 and low temperature kinetics of S(1D) + C2H2. Phys Chem Chem Phys 2011; 13:8485-501. [DOI: 10.1039/c0cp02813d] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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29
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Wu SM, Radenovic DČ, van der Zande WJ, Groenenboom GC, Parker DH, Vallance C, Zare RN. Control and imaging of O(1D2) precession. Nat Chem 2010; 3:28-33. [DOI: 10.1038/nchem.929] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2010] [Accepted: 11/05/2010] [Indexed: 11/09/2022]
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30
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Samanta K, Yarkony DR. On the role of conical intersections and their local topography in the photodissociation of the 1-hydroxyethyl radical. Chem Phys 2010. [DOI: 10.1016/j.chemphys.2010.10.011] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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31
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Karpichev B, Reisler H, Krylov AI, Diri K. Effect of Hyperconjugation on Ionization Energies of Hydroxyalkyl Radicals. J Phys Chem A 2008; 112:9965-9. [DOI: 10.1021/jp805250t] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Boris Karpichev
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482
| | - Hanna Reisler
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482
| | - Anna I. Krylov
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482
| | - Kadir Diri
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482
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Zhang F, Gu X, Kaiser RI, Balucani N, Huang CH, Kao CH, Chang AHH. A Crossed Beam and Ab Initio Study of the Reaction of Atomic Boron with Ethylene. J Phys Chem A 2008; 112:3837-45. [DOI: 10.1021/jp710810u] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | | | | | - Nadia Balucani
- Dipartimento di Chimica, Università di Perugia, 06123 Perugia, Italy
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33
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Vranckx S, Peeters J, Carl S. A temperature dependence kinetic study of O(1D) + CH4: overall rate coefficient and product yields. Phys Chem Chem Phys 2008; 10:5714-22. [DOI: 10.1039/b804903c] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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34
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Kohguchi H, Ogi Y, Suzuki T. Reaction mechanism duality in O(1D2) + CD4→ OD + CD3 identified from scattering distributions of rotationally state selected CD3. Phys Chem Chem Phys 2008; 10:7222-5. [PMID: 19060965 DOI: 10.1039/b815519d] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Affiliation(s)
- Hiroshi Kohguchi
- Chemical Dynamics Laboratory, RIKEN, Hirosawa 2-1, Wako, 351-0198, Japan
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35
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Karpichev B, Edwards LW, Wei J, Reisler H. Electronic Spectroscopy and Photodissociation Dynamics of the 1-Hydroxyethyl Radical CH3CHOH. J Phys Chem A 2008; 112:412-8. [DOI: 10.1021/jp077213w] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Boris Karpichev
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482
| | - Laura W. Edwards
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482
| | - Jie Wei
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482
| | - Hanna Reisler
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482
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36
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Shen G, Yang X, Shu J, Yang CH, Lee YT. A crossed molecular beam study on the dynamics of F atom reaction with SiH4. J Chem Phys 2006; 125:133103. [PMID: 17029429 DOI: 10.1063/1.2217438] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
In this report, the dynamics of the F+SiH4 reaction has been studied using the universal crossed molecular beam method. Angular resolved time-of-flight spectra have been measured for all reaction products in a single set of experiments. Two different reaction channels have been observed: HF+SiH3 and SiH3F+H. Product angular distributions as well as energy distributions were determined for these two product channels. Experimental results show that the HF product is forward scattered relative to the F atom beam direction, while the SiH3F product is backward scattered relative the F atom beam direction, suggesting that two reaction channels proceed with distinctive reaction dynamics. The relative branching ratios of the two channels have also been estimated.
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Affiliation(s)
- Guanlin Shen
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning 116023, China
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37
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Kohguchi H, Suzuki T. A Crossed Molecular Beam Imaging Study of the O(1D2)+HCl→OH+Cl(2PJ=3/2, 1/2) Reaction. Chemphyschem 2006; 7:1250-7. [PMID: 16736536 DOI: 10.1002/cphc.200500650] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
A crossed molecular beam study is presented for the O((1)D(2))+HCl-->OH+Cl((2)P(J)) reaction at the collision energy of 6 kcal mol(-1). State-resolved doubly differential cross sections are obtained for the Cl((2)P(J=3/2) ) and Cl*((2)P(J=1/2) ) products by velocity-map ion imaging. Both products are slightly more forward scattered, which suggests a reaction mechanism without a long-lived intermediate in the ground electronic state. A small fraction (23 %) of the energy release into the translational degree of freedom indicates strong internal excitation of the counterpart OH radical. The contribution of the electronic excited states of O--HCl to the overall reaction is also examined from the doubly differential cross sections.
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Affiliation(s)
- Hiroshi Kohguchi
- Chemical Dynamics Laboratory, RIKEN, Hirosawa, Wako 351-0198, Japan.
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38
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Whitney ES, Zolot AM, McCoy AB, Francisco JS, Nesbitt DJ. Reactive scattering dynamics in atom+polyatomic systems: F+C2H6-->HF(v,J)+C2H5. J Chem Phys 2006; 122:124310. [PMID: 15836381 DOI: 10.1063/1.1868553] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
State-to-state scattering dynamics of F+C2H6-->HF(v,J)+C2H5 have been investigated at Ecom=3.2(6) kcalmol under single-collision conditions, via detection of nascent rovibrationally resolved HF(v,J) product states with high-resolution infrared laser absorption methods. State-resolved Doppler absorption profiles are recorded for multiple HF(v,J) transitions originating in the v=0,1,2,3 manifold, analyzed to yield absolute column-integrated densities via known HF transition moments, and converted into nascent probabilities via density-to-flux analysis. The spectral resolution of the probe laser also permits Doppler study of translational energy release into quantum-state-resolved HF fragments, which reveals a remarkable linear correlation between (i) HF(v,J) translational recoil and (ii) the remaining energy available, Eavail=Etot-E(HF(v,J)). The dynamics are interpreted in the context of a simple impulsive model based on conservation of linearangular momentum that yields predictions in good agreement with experiment. Deviations from the model indicate only minor excitation of ethyl vibrations, in contrast with a picture of extensive intramolecular vibrational energy flow but consistent with Franck-Condon excitation of the methylene CH2 bending mode. The results suggest a relatively simple dynamical picture for exothermic atom+polyatomic scattering, i.e., that of early barrier dynamics in atom+diatom systems but modified by impulsive recoil coupling at the transition state between translationalrotational degrees of freedom.
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Affiliation(s)
- Erin S Whitney
- JILA, National Institute of Standards and Technology and University of Colorado, Boulder, Colorado 80309-0440, USA
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39
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Chen PPY, Chan SI. Theoretical modeling of the hydroxylation of methane as mediated by the particulate methane monooxygenase. J Inorg Biochem 2006; 100:801-9. [PMID: 16494948 DOI: 10.1016/j.jinorgbio.2005.12.014] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2005] [Accepted: 12/13/2005] [Indexed: 11/22/2022]
Abstract
We present here the results of density functional theory (DFT) calculations directed toward elucidation of the CH bond activation mechanism that might be adopted by the particulate methane monooxygenase (pMMO) in the hydroxylation of methane and related small alkanes. In these calculations, we considered three of the most probable models for the transition metal active site mediating the "oxo-transfer": (i) the trinuclear copper cluster bis(mu(3)-oxo)trinuclear copper(II, II, III) complex 1, recently proposed by Chan et al. [S.I. Chan, K.H.-C. Chen, S.S.-F. Yu, C.-L. Chen, S.S.-J. Kuo, Biochemistry 43 (2004) 4421-4430.]; (ii) the most frequently used model complex, bis(mu-oxo)Cu(III)(2) complex 2; and (iii) the mixed-valence bis(mu-oxo)Cu(II)Cu(III) complex 3. The results obtained indicate that the methane hydroxylation chemistry mediated by the trinuclear copper cluster bis(mu(3)-oxo)trinuclear copper(II, II, III) complex 1 offers the most facile pathway for methane hydroxylation, and this model yields KIE values that are in good agreement with experiment. In this mechanism, the reaction proceeds along a "singlet" potential surface and a "singlet oxene" is directly inserted across a CH bond in a concerted manner. Kinetic isotope effects (k(H)/k(D) or KIE) associated with the concerted oxene insertion process mediated by complex 1 are calculated to be 5.2 at 300K when tunneling effects are included. Overall rate constants for the methane hydroxylation by the three models have been calculated as a function of temperature, and the rates are at least 5-6 orders of magnitude more facile when the chemistry is mediated by complex 1 compared to complex 2 or complex 3.
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Affiliation(s)
- Peter P-Y Chen
- Institute of Chemistry, Academia Sinica, 128 Section 2, Academia Road, Nankang, Taipei 115, Taiwan, ROC
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40
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Abstract
In this article, we briefly review the recent experimental studies of the multiple channel dynamics of the O((1)D) reaction with alkane molecules using the significantly improved universal crossed molecular beam technique. In these reactions, the dominant reaction mechanism is found to be an O atom insertion into the C-H bond, while a direct abstraction mechanism is also present in the OH formation channel. While the reaction mechanism is similar for all of these reactions, the product channels are quite different because of the significantly different energetics of these reaction channels. In the O((1)D) reaction with methane, OH formation is the dominant process while H atom formation is also a significant process. In the O((1)D) reaction with ethane, however, the CH(3) + CH(2)OH is the most important process, OH formation is still significant and H atom formation is of minor importance. A new type of O atom insertion mechanism (insertion into a C-C bond) is also inferred from the O((1)D) reaction with cyclopropane. Through these comprehensive studies, complete dynamical pictures of many multiple channel chemical reactions could be obtained. Such detailed studies could provide a unique bridge between dynamics and kinetics research.
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Affiliation(s)
- Xueming Yang
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian, Liaoning 116023, P. R. China
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41
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Ran Q, Yang CH, Lee YT, Lu IC, Shen G, Wang L, Yang X. Molecular beam studies of the F atom reaction with propyne: Site specific reactivity. J Chem Phys 2005; 122:44307. [PMID: 15740248 DOI: 10.1063/1.1839865] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The dynamics of the F atom reaction with propyne (CH(3)CCH) has been investigated using a universal crossed molecular beam apparatus. Two reaction channels have been clearly observed: H+C(3)H(3)F and HF+C(3)H(3). The substitution of F for H occurs mainly via a complex formation mechanism, producing reaction products with some contribution from a direct reaction mechanism. The HF product, however, appears to be dominantly forward scattered relative to the F atom beam direction, suggesting that the HF formation occurs via a direct abstraction mechanism. Branching ratios for the two observed reaction channels are also determined. The H formation channel is found to be the major reaction pathway, while the HF formation channel is also significant. From the measurements of DF versus HF products from the F atom reaction with deuterated propyne, the H atom picked up by the F atom in the reaction with normal propyne seems to come mostly from the CH(3) group. In addition, the H atom produced in the H atom formation channel appears to be mostly from the CH(3) group with some contribution from the CCH group.
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Affiliation(s)
- Qin Ran
- Department of Chemistry, University of California at Santa Barbara, Santa Barbara, CA 93106, USA
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42
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Laser fluorescence study of the S(1D)+CD4 reaction: determination of the SD product internal state distribution. Chem Phys Lett 2005. [DOI: 10.1016/j.cplett.2004.12.044] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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43
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Feng L, Wei J, Reisler H. Rotationally Resolved Infrared Spectroscopy of the Hydroxymethyl Radical (CH2OH)†. J Phys Chem A 2004. [DOI: 10.1021/jp040101+] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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44
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Yu HG, Muckerman JT. MRCI Calculations of the Lowest Potential Energy Surface for CH3OH and Direct ab Initio Dynamics Simulations of the O(1D) + CH4 Reaction. J Phys Chem A 2004. [DOI: 10.1021/jp049642p] [Citation(s) in RCA: 55] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Hua-Gen Yu
- Department of Chemistry, Brookhaven National Laboratory, Upton, New York 11973-5000
| | - James T. Muckerman
- Department of Chemistry, Brookhaven National Laboratory, Upton, New York 11973-5000
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45
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Feng L, Reisler H. Photodissociation of the Hydroxymethyl Radical from the 22A‘ ‘(3pz) State: H2CO and HCOH Products. J Phys Chem A 2004. [DOI: 10.1021/jp0479769] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Lin Feng
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482
| | - Hanna Reisler
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482
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46
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Feng L, Demyanenko AV, Reisler H. Competitive C–H and O–D bond fission channels in the UV photodissociation of the deuterated hydroxymethyl radical CH2OD. J Chem Phys 2004; 120:6524-30. [PMID: 15267543 DOI: 10.1063/1.1665880] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Photodissociation studies of the CH2OD radical in the region 28,000-41,000 cm(-1) (357-244 nm), which includes excitation to the 3s, 3p(x), and 3p(z) states, are reported. H and D photofragments are monitored by using resonance-enhanced multiphoton ionization (REMPI) from the onset of H formation at approximately 30,500 cm(-1) to the origin band region of the 3pz(2A")<--1 2A" transition at 41,050 cm(-1). Kinetic energy distributions P(ET) and recoil anisotropy parameters as a function of kinetic energy, beta(eff)(ET), are determined by the core sampling technique for the channels producing H and D fragments. Two dissociation channels are identified: (I) D+CH2O and (II) H+CHOD. The contribution of channel II increases monotonically as the excitation energy is increased. Based on the calculations of Hoffmann and Yarkony [J. Chem. Phys. 116, 8300 (2002)], it is concluded that conical intersections between 3s and the ground state determine the final branching ratio even when initial excitation accesses the 3px) and 3pz states. The different beta(eff) values obtained for channels I and II (-0.7 and approximately 0.0, respectively) are attributed to the different extents of out-of-plane nuclear motions in the specific couplings between 3s and the ground state (of A' and A'' symmetry, respectively) that lead to each channel. The upper limit to the dissociation energy of the C-H bond, determined from P(ET), is D0(C-H)=3.4+/-0.1 eV (79+/-2 kcal/mol). Combining this value with the known heats of formation of H and CH2OD, the heat of formation of CHOD is estimated at DeltaHf(0)(CHOD)=24+/-2 kcal/mol.
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Affiliation(s)
- Lin Feng
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482, USA
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47
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Bechtel HA, Camden JP, Zare RN. State-to-state dynamics of the Cl+CH3OH→HCl+CH2OH reaction. J Chem Phys 2004; 120:4231-9. [PMID: 15268590 DOI: 10.1063/1.1644797] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Molecular chlorine, methanol, and helium are co-expanded into a vacuum chamber using a custom designed "late-mixing" nozzle. The title reaction is initiated by photolysis of Cl2 at 355 nm, which generates monoenergetic Cl atoms that react with CH3OH at a collision energy of 1960 +/- 170 cm(-1) (0.24 +/- 0.02 eV). Rovibrational state distributions of the nascent HCl products are obtained via 2 + 1 resonance enhanced multiphoton ionization, center-of-mass scattering distributions are measured by the core-extraction technique, and the average internal energy of the CH3OH co-products is deduced by measuring the spatial anisotropy of the HCl products. The majority (84 +/- 7%) of the HCl reaction products are formed in HCl(v = 0) with an average rotational energy of [Erot] = 390 +/- 70 cm(-1). The remaining 16 +/- 7% are formed in HCl(v = 1) and have an average rotational energy of [Erot] = 190 +/- 30 cm(-1). The HCl(v = 1) products are primarily forward scattered, and they are formed in coincidence with CH2OH products that have little internal energy. In contrast, the HCl(v = 0) products are formed in coincidence with CH2OH products that have significant internal energy. These results indicate that two or more different mechanisms are responsible for the dynamics in the Cl + CH3OH reaction. We suggest that (1) the HCl(v = 1) products are formed primarily from collisions at high impact parameter via a stripping mechanism in which the CH2OH co-products act as spectators, and (2) the HCl(v = 0) products are formed from collisions over a wide range of impact parameters, resulting in both a stripping mechanism and a rebound mechanism in which the CH2OH co-products are active participants. In all cases, the reaction of fast Cl atoms with CH3OH is with the hydrogen atoms on the methyl group, not the hydrogen on the hydroxyl group.
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Affiliation(s)
- Hans A Bechtel
- Department of Chemistry, Stanford University, Stanford, California 94305-5080, USA
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49
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Hernando J, Millán J, Sayós R, González M. Ab initiostudy of the O(1D)+CH4(X 1A1)→OH(X 2Π)+CH3(X 2A2″) reaction: Ground and excited potential energy surfaces. J Chem Phys 2003. [DOI: 10.1063/1.1615766] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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50
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