Infrared Spectra of Crystalline and Matrix Isolated Pyridine and Pyridine‐D5

Experimental Characterization of the Pyridine:Acetylene Co-crystal and Implications for Titan's Surface

Titan, Saturn's largest moon, has a plethora of organic compounds in the atmosphere and on the surface that interact with each other. Cryominerals such as co-crystals may influence the geologic processes and chemical composition of Titan's surface, which in turn informs our understanding of how Titan may have evolved, how the surface is continuing to change, and the extent of Titan's habitability. Previous works have shown that a pyridine:acetylene (1:1) co-crystal forms under specific temperatures and experimental conditions; however, this has not yet been demonstrated under Titan-relevant conditions. Our work here demonstrates that the pyridine:acetylene co-crystal is stable from 90 K, Titan's average surface temperature, up to 180 K under an atmosphere of N2. In particular, the co-crystal forms via liquid-solid interactions within minutes upon mixing of the constituents at 150 K, as evidenced by distinct, new Raman bands and band shifts. X-ray diffraction (XRD) results indicate moderate anisotropic thermal expansion (about 0.5-1.1%) along the three principal axes between 90-150 K. Additionally, the co-crystal is detectable after being exposed to liquid ethane, implying stability in a residual ethane "wetting" scenario on Titan. These results suggest that the pyridine:acetylene co-crystal could form in specific geologic contexts on Titan that allow for warm environments in which liquid pyridine could persist, and as such, this cryomineral may preserve the evidence of impact, cryovolcanism, or subsurface transport in surface materials.

Pyridine Dimers and Their Low-Temperature Isomerization: A High-Resolution Matrix-Isolation Spectroscopy Study

The bonding between two neutral aromatic compounds, especially small ones, has been controversially debated in the last decades, and terms like "π-stacking" had to be revised. Surprisingly, despite of many experimental and computational work, there is still no clear consensus about the structure of and the bonding in the pyridine dimer. In this work, for different isomeric forms of the pyridine dimer, the structures and bonding were elucidated by combining high-resolution matrix-isolation spectroscopic results with quantum-chemical calculations. High-resolution IR spectra of Ne matrices at 4 K containing pyridine were recorded for different concentrations and upon annealing to 10 and 12 K, relying on three isotopologues of pyridine. The spectra show the presence of hydrogen-bonded, T-shaped, and stacked forms of weakly-bound pyridine dimers. Among these, the hydrogen-bonded isomer is identified as the lowest-energy form. The results provide for the first time conclusive information about the interaction between two pyridine dimers.

Suppression of isotopic polymorphism

Crystallisation at pressure overcomes the effect of isotopic polymorphism in the methylpyridine pentachlorophenol co-crystal. Though the hydrogenated Cc polymorph can only be obtained at pressure, it is stable on recovery to ambient conditions.

High-pressure polymorphism in pyridine

Single crystals of the high-pressure phases II and III of pyridine have been obtained by in situ crystallization at 1.09 and 1.69 GPa, revealing the crystal structure of phase III for the first time using X-ray diffraction. Phase II crystallizes in P212121 with Z' = 1 and phase III in P41212 with Z' = ½. Neutron powder diffraction experiments using pyridine-d5 establish approximate equations of state of both phases. The space group and unit-cell dimensions of phase III are similar to the structures of other simple compounds with C 2v molecular symmetry, and the phase becomes stable at high pressure because it is topologically close-packed, resulting in a lower molar volume than the topologically body-centred cubic phase II. Phases II and III have been observed previously by Raman spectroscopy, but have been mis-identified or inconsistently named. Raman spectra collected on the same samples as used in the X-ray experiments establish the vibrational characteristics of both phases unambiguously. The pyridine molecules interact in both phases through CH⋯π and CH⋯N interactions. The nature of individual contacts is preserved through the phase transition between phases III and II, which occurs on decompression. A combination of rigid-body symmetry mode analysis and density functional theory calculations enables the soft vibrational lattice mode which governs the transformation to be identified.

Matrix isolation infrared spectroscopic study of 4-Pyridinecarboxaldehyde and of its UV-induced photochemistry

The structure, infrared spectrum, barrier to internal rotation, and photochemistry of 4-pyridinecarboxaldehyde (4PCA) were studied by low-temperature (10K) matrix isolation infrared spectroscopy and quantum chemical calculations undertaken at both Moller-Plesset to second order (MP2) and density functional theory (DFT/B3LYP) levels of approximation. The molecule has a planar structure (C_s point group), with MP2/6-311++G(d,p) predicted internal rotation barrier of 26.6kJmol^-1, which is slightly smaller than that of benzaldehyde (~30kJmol^-1), thus indicating a less important electron charge delocalization from the aromatic ring to the aldehyde moiety in 4PCA than in benzaldehyde. A complete assignment of the infrared spectrum of 4PCA isolated in an argon matrix has been done for the whole 4000-400cm^-1 spectral range, improving over previously reported data. Both the geometric parameters and vibrational frequencies of the aldehyde group reveal the relevance in this molecule of the electronic charge back-donation effect from the oxygen trans lone electron pair to the aldehyde CH anti-bonding orbital. Upon in situ UV irradiation of the matrix-isolated compound, prompt decarbonylation was observed, leading to formation of pyridine.

Comprehensive Vibrational Spectroscopic Investigation of trans,trans,trans-[Pt(N3)2(OH)2(py)2], a Pt(IV) Diazido Anticancer Prodrug Candidate

We report a detailed study of a promising photoactivatable metal-based anticancer prodrug candidate, trans,trans,trans-[Pt(N3)2(OH)2(py)2] (C1; py = pyridine), using vibrational spectroscopic techniques. Attenuated total reflection Fourier transform infrared (ATR-FTIR), Raman, and synchrotron radiation far-IR (SR-FIR) spectroscopies were applied to obtain highly resolved ligand and Pt-ligand vibrations for C1 and its precursors (trans-[Pt(N3)2(py)2] (C2) and trans-[PtCl2(py)2] (C3)). Distinct IR- and Raman-active vibrational modes were assigned with the aid of density functional theory calculations, and trends in the frequency shifts as a function of changing Pt coordination environment were determined and detailed for the first time. The data provide the ligand and Pt-ligand (azide, hydroxide, pyridine) vibrational signatures for C1 in the mid- and far-IR region, which will provide a basis for the better understanding of the interaction of C1 with biomolecules.

Phase transitions in non-centrosymmetric pyridinium trifluoromethanesulfonate crystal: Vibrational studies

Infrared spectroscopy (4000-400 cm(-1)) in the wide temperature range, from 11 to 473 K, has been used to investigate the non-centrosymmetric pyridinium trifluoromethanesulfonate crystal, exhibiting several phase transitions. The assignments of the bands observed in the studied spectra have been proposed. The temperature dependence of the wavenumbers and the full width at half maximum (FWHM) of the bands arising from some internal vibrations of the pyridinium cation and the triflate anion have been analyzed in order to achieve a knowledge of whether these both ions are involved in the phase transitions and what is the role of these both ions in these phase transitions. The infrared measurements showed that the both ions, pyridinium cation and triflate anion are involved in the high temperature phase transitions of the order-disorder type, previously reported at 305.1 and 396.7 K. They also revealed that these transitions are governed by a rotational mobility (changes in dynamical states) of both the pyridinium and triflate ions. Our results show that the multiple structures of the νNH and νND bands observed in the studied infrared spectra is due to the Fermi resonance interaction between the stretching vibration of the N-H⋯O hydrogen bond and the overtones and combinations of the internal vibrations of the pyridinium cation.

A new insight into the vibrational analysis of pyridine

A new proposal of vibrational assignment for pyridine is reported. Infrared spectra for the liquid and gas phases as well as Raman spectra for the liquid have been recorded and analyzed for -d(0), -d(5) and, for the first time to our knowledge, for 15N isotopomers as well. The proposal of assignment has been assessed by the calculation of a number of force fields, theoretical (ab initio, density functional theory) approaches as well as by a set of simple valence internal coordinates force constants transferred from benzene using the pure vibrational force field approximation. In all cases, the root mean square (rms) for the wavenumbers turn out to be lower than the best obtained so far, i.e. 6.6 cm(-1), as stated by Wiberg et al.