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Henrichsmeyer J, Thelen M, Fink RF. What is the Exchange Repulsion Energy? Insight by Partitioning into Physically Meaningful Contributions. Chemphyschem 2025; 26:e202400887. [PMID: 39571090 DOI: 10.1002/cphc.202400887] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2024] [Revised: 10/30/2024] [Indexed: 12/20/2024]
Abstract
It is shown that the exchange repulsion energy, Exr, can be rationalized by partitioning the respective energy expression for two systems with Hartree-Fock orbitals into physically meaningful contributions. A division of Exr into a positive kinetic and a negative potential part is possible, but these contributions correlate only poorly with the actual exchange repulsion energy. A more meaningful partitioning is derived, where all kinetic energy contributions are collected in a term that vanishes for exact Hartree-Fock orbitals due to their stationarity conditions. The remaining terms can be distinguished into an exchange integral contribution as well as contributions to the repulsion energy with two, three and four orbital indices. The forms, relationships and absolute sizes of these terms suggest an intuitive partitioning of the exchange repulsion energy into Molecular Orbital Pair Contributions to the Exchange repulsion energy (MOPCE). Insight into the analytic form and quantitative size of these contributions is provided by considering the3 Σ u + ( 1 σ g 1 σ u ) ${^3 \Sigma _u^+ (1\sigma _g 1\sigma _u )}$ state of the H2 molecule, the water dimer, as well as an argon atom interacting with Cl2 and N2.
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Affiliation(s)
- Johannes Henrichsmeyer
- Institute of Physical and Theoretical Chemistry, Auf der Morgenstelle 18, University of Tübingen, D-72076, Tübingen, Germany
| | - Michael Thelen
- Institute of Physical and Theoretical Chemistry, Auf der Morgenstelle 18, University of Tübingen, D-72076, Tübingen, Germany
| | - Reinhold F Fink
- Institute of Physical and Theoretical Chemistry, Auf der Morgenstelle 18, University of Tübingen, D-72076, Tübingen, Germany
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2
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Lu C, Xu L, Zhou L, Shi M, Lu P, Li W, Dörner R, Lin K, Wu J. Intermolecular interactions probed by rotational dynamics in gas-phase clusters. Nat Commun 2024; 15:4360. [PMID: 38777851 PMCID: PMC11111446 DOI: 10.1038/s41467-024-48822-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Accepted: 05/14/2024] [Indexed: 05/25/2024] Open
Abstract
The rotational dynamics of a molecule is sensitive to neighboring atoms or molecules, which can be used to probe the intermolecular interactions in the gas phase. Here, we real-time track the laser-driven rotational dynamics of a single N2 molecule affected by neighboring Ar atoms using coincident Coulomb explosion imaging. We find that the alignment trace of N-N axis decays fast and only persists for a few picoseconds when an Ar atom is nearby. We show that the decay rate depends on the rotational geometry of whether the Ar atom stays in or out of the rotational plane of the N2 molecule. Additionally, the vibration of the van der Waals bond is found to be excited through coupling with the rotational N-N axis. The observations are well reproduced by solving the time-dependent Schrödinger equation after taking the interaction potential between the N2 and Ar into consideration. Our results demonstrate that environmental effects on a molecular level can be probed by directly visualizing the rotational dynamics.
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Affiliation(s)
- Chenxu Lu
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, China
| | - Long Xu
- Department of Physics, Xiamen University, Xiamen, China
| | - Lianrong Zhou
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, China
| | - Menghang Shi
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, China
| | - Peifen Lu
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, China
| | - Wenxue Li
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, China
| | - Reinhard Dörner
- Institut für Kernphysik, Goethe-Universität Frankfurt am Main, Frankfurt am Main, Germany
| | - Kang Lin
- School of Physics, Zhejiang Key Laboratory of Micro-Nano Quantum Chips and Quantum Control, Zhejiang University, Hangzhou, China.
| | - Jian Wu
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai, China.
- Chongqing Key Laboratory of Precision Optics, Chongqing Institute of East China Normal University, Chongqing, China.
- Collaborative Innovation Center of Extreme Optics, Shanxi University, Taiyuan, China.
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Borocci S, Grandinetti F, Sanna N. Concerning the Role of σ-Hole in Non-Covalent Interactions: Insights from the Study of the Complexes of ArBeO with Simple Ligands. Molecules 2021; 26:molecules26154477. [PMID: 34361629 PMCID: PMC8348141 DOI: 10.3390/molecules26154477] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2021] [Revised: 07/15/2021] [Accepted: 07/20/2021] [Indexed: 11/23/2022] Open
Abstract
The structure, stability, and bonding character of some exemplary LAr and L-ArBeO (L = He, Ne, Ar, N2, CO, F2, Cl2, ClF, HF, HCl, NH3) were investigated by MP2 and coupled-cluster calculations, and by symmetry-adapted perturbation theory. The nature of the stabilizing interactions was also assayed by the method recently proposed by the authors to classify the chemical bonds in noble-gas compounds. The comparative analysis of the LAr and L-ArBeO unraveled geometric and bonding effects peculiarly related to the σ-hole at the Ar atom of ArBeO, including the major stabilizing/destabilizing role of the electrostatic interactionensuing from the negative/positive molecular electrostatic potential of L at the contact zone with ArBeO. The role of the inductive and dispersive components was also assayed, making it possible to discern the factors governing the transition from the (mainly) dispersive domain of the LAr, to the σ-hole domain of the L-ArBeO. Our conclusions could be valid for various types of non-covalent interactions, especially those involving σ-holes of respectable strength such as those occurring in ArBeO.
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Affiliation(s)
- Stefano Borocci
- Dipartimento per la Innovazione nei Sistemi Biologici, Agroalimentari e Forestali (DIBAF), Università della Tuscia, L.go dell’Università, s.n.c., 01100 Viterbo, Italy; (S.B.); (N.S.)
- Istituto per i Sistemi Biologici del CNR, Via Salaria, Km 29.500, 00015 Monterotondo, Italy
| | - Felice Grandinetti
- Dipartimento per la Innovazione nei Sistemi Biologici, Agroalimentari e Forestali (DIBAF), Università della Tuscia, L.go dell’Università, s.n.c., 01100 Viterbo, Italy; (S.B.); (N.S.)
- Istituto per i Sistemi Biologici del CNR, Via Salaria, Km 29.500, 00015 Monterotondo, Italy
- Correspondence: ; Tel.: +39-07-6135-7126
| | - Nico Sanna
- Dipartimento per la Innovazione nei Sistemi Biologici, Agroalimentari e Forestali (DIBAF), Università della Tuscia, L.go dell’Università, s.n.c., 01100 Viterbo, Italy; (S.B.); (N.S.)
- Istituto per la Scienza e Tecnologia dei Plasmi del CNR (ISTP), Via Amendola 122/D, 70126 Bari, Italy
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4
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Soper AK, Skarmoutsos I, Kłos J, Samios J, Marinakis S. A study of Ar-N2 supercritical mixtures using neutron scattering, molecular dynamics simulations and quantum mechanical scattering calculations. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.111168] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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5
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Borocci S, Grandinetti F, Sanna N, Antoniotti P, Nunzi F. Noncovalent Complexes of the Noble-Gas Atoms: Analyzing the Transition from Physical to Chemical Interactions. J Comput Chem 2019; 40:2318-2328. [PMID: 31254471 DOI: 10.1002/jcc.26010] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2019] [Revised: 06/01/2019] [Accepted: 06/05/2019] [Indexed: 01/04/2023]
Abstract
The bonding character of the noncovalent complexes of the noble-gas (Ng) atoms ranges from nearly purely dispersive contacts to interactions featuring appreciable contributions of induction and charge transfer. In this study, we discuss a new quantitative index that seems peculiarly informative about these diverse bonding situations. This index was termed as the degree of polarization (DoP) of Ng, as it measures, in essence, the Ng polarization promoted by the binding partner. The definition of the DoP(Ng) relies on the analysis of the local electron energy density H(r), and its physical meaning was best appreciated by studying also the charge-displacement function and the molecular electrostatic potential of the investigated benchmark species, that include nearly 60 Ngs complexes of different bonding character. The DoP(Ng) appears of general applicability, and is also positively correlated with other bonding character indices. © 2019 Wiley Periodicals, Inc.
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Affiliation(s)
- Stefano Borocci
- Dipartimento per la Innovazione nei sistemi Biologici, Agroalimentari e Forestali (DIBAF), Università della Tuscia, L.go dell'Università, s.n.c., 01100 Viterbo, Italy.,Istituto per i Sistemi Biologici del CNR, Via Salaria, Km 29.500, 00015 Monterotondo, Rome, Italy
| | - Felice Grandinetti
- Dipartimento per la Innovazione nei sistemi Biologici, Agroalimentari e Forestali (DIBAF), Università della Tuscia, L.go dell'Università, s.n.c., 01100 Viterbo, Italy.,Istituto per i Sistemi Biologici del CNR, Via Salaria, Km 29.500, 00015 Monterotondo, Rome, Italy
| | - Nico Sanna
- Dipartimento per la Innovazione nei sistemi Biologici, Agroalimentari e Forestali (DIBAF), Università della Tuscia, L.go dell'Università, s.n.c., 01100 Viterbo, Italy
| | - Paola Antoniotti
- Dipartimento di Chimica, Università di Torino, Via Pietro Giuria, 7 10125 Torino, Italy
| | - Francesca Nunzi
- Dipartimento di Chimica, Biologia e Biotecnologie (DCBB), Via Elce di Sotto, 8 06123 Perugia, Italy.,Istituto di Scienze e Tecnologie Molecolari del CNR (ISTM-CNR), Via Elce di Sotto, 8 06123 Perugia, Italy
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Makina Y, Mahjoubi K, Benoit DM, Jaidane NE, Al-Mogren MM, Hochlaf M. Periodic Dispersion-Corrected Approach for Isolation Spectroscopy of N 2 in an Argon Environment: Clusters, Surfaces, and Matrices. J Phys Chem A 2017; 121:4093-4102. [PMID: 28485607 DOI: 10.1021/acs.jpca.7b00093] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Ab initio and Perdew, Burke, and Ernzerhof (PBE) density functional theory with dispersion correction (PBE-D3) calculations are performed to study N2-Arn (n ≤ 3) complexes and N2 trapped in Ar matrix (i.e., N2@Ar). For cluster computations, we used both Møller-Plesset (MP2) and PBE-D3 methods. For N2@Ar, we used a periodic-dispersion corrected model for Ar matrix, which consists on a slab of four layers of Ar atoms. We determined the equilibrium structures and binding energies of N2 interacting with these entities. We also deduced the N2 vibrational frequency shifts caused by clustering or embedding compared to an isolated N2 molecule. Upon complexation or embedding, the vibrational frequency of N2 is slightly shifted, while its equilibrium distance remains unchanged. This is due to the weak interactions between N2 and Ar within these compounds. Our calculations show the importance of inclusion of dispersion effects for the accurate description of geometrical and spectroscopic parameters of N2 isolated, in interaction with Ar surfaces, or trapped in Ar matrices.
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Affiliation(s)
- Y Makina
- Laboratoire de Spectroscopie Atomique, Moléculaire et Applications-LSAMA, Université de Tunis El Manar , Tunis 1068, Tunisia
| | - K Mahjoubi
- Laboratoire de Spectroscopie Atomique, Moléculaire et Applications-LSAMA, Université de Tunis El Manar , Tunis 1068, Tunisia
| | - D M Benoit
- Chemistry, School of Mathematical and Physical Sciences, University of Hull , Hull HU6 7RX, U.K
| | - N-E Jaidane
- Laboratoire de Spectroscopie Atomique, Moléculaire et Applications-LSAMA, Université de Tunis El Manar , Tunis 1068, Tunisia
| | - M Mogren Al-Mogren
- Chemistry Department, Faculty of Science, King Saud University , PO Box 2455, Riyadh 11451, Kingdom of Saudi Arabia
| | - M Hochlaf
- Université Paris-Est , Laboratoire Modélisation et Simulation Multi Echelle, MSME UMR 8208 CNRS, 5 bd Descartes, 77454 Marne-la-Vallée, France
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Fu H, Zheng R, Zheng L. Theoretical studies of three-dimensional potential energy surfaces using neural networks and rotational spectra of the Ar–N2complex. Mol Phys 2015. [DOI: 10.1080/00268976.2015.1085603] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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8
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Wu C, Wu C, Song D, Su H, Xie X, Li M, Deng Y, Liu Y, Gong Q. Communication: Determining the structure of the N2Ar van der Waals complex with laser-based channel-selected Coulomb explosion. J Chem Phys 2014; 140:141101. [DOI: 10.1063/1.4871205] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Dham AK, McBane GC, McCourt FRW, Meath WJ. An exchange-Coulomb model potential energy surface for the Ne-CO interaction. II. Molecular beam scattering and bulk gas phenomena in Ne-CO mixtures. J Chem Phys 2010; 132:024308. [PMID: 20095675 DOI: 10.1063/1.3285721] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Four potential energy surfaces are of current interest for the Ne-CO interaction. Two are high-level fully ab initio surfaces obtained a decade ago using symmetry-adapted perturbation theory and supermolecule coupled-cluster methods. The other two are very recent exchange-Coulomb (XC) model potential energy surfaces constructed by using ab initio Heitler-London interaction energies and literature long range dispersion and induction energies, followed by the determination of a small number of adjustable parameters to reproduce a selected subset of pure rotational transition frequencies for the (20)Ne-(12)C(16)O van der Waals cluster. Testing of the four potential energy surfaces against a wide range of available experimental microwave, millimeter-wave, and mid-infrared Ne-CO transition frequencies indicated that the XC potential energy surfaces gave results that were generally far superior to the earlier fully ab initio surfaces. In this paper, two XC model surfaces and the two fully ab initio surfaces are tested for their abilities to reproduce experiment for a wide range of nonspectroscopic Ne-CO gas mixture properties. The properties considered here are relative integral cross sections and the angle dependence of rotational state-to-state differential cross sections, rotational relaxation rate constants for CO(v=2) in Ne-CO mixtures at T=296 K, pressure broadening of two pure rotational lines and of the rovibrational lines in the CO fundamental and first overtone transitions at 300 K, and the temperature and, where appropriate, mole fraction dependencies of the interaction second virial coefficient, the binary diffusion coefficient, the interaction viscosity, the mixture shear viscosity and thermal conductivity coefficients, and the thermal diffusion factor. The XC model potential energy surfaces give results that lie within or very nearly within the experimental uncertainties for all properties considered, while the coupled-cluster ab initio surface gives results that agree similarly well for all but one of the properties considered. When the present comparisons are combined with the ability to give accurate spectroscopic transition frequencies for the Ne-CO van der Waals complex, only the XC potential energy surfaces give results that agree well with all extant experimental data for the Ne-CO interaction.
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Affiliation(s)
- Ashok K Dham
- Department of Physics, Punjabi University, Patiala 147002, India
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Dham AK, McCourt FRW, Meath WJ. An exchange-Coulomb model potential energy surface for the Ne-CO interaction. I. Calculation of Ne-CO van der Waals spectra. J Chem Phys 2009; 130:244310. [PMID: 19566156 DOI: 10.1063/1.3157169] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Exchange-Coulomb model potential energy surfaces have been developed for the Ne-CO interaction. The initial model is a three-dimensional potential energy surface based upon computed Heitler-London interaction energies and literature results for the long-range induction and dispersion energies, all as functions of interspecies distance, the orientation of CO relative to the interspecies axis, and the bond length of the CO molecule. Both a rigid-rotor model potential energy surface, obtained by setting the CO bond length equal to its experimental spectroscopic equilibrium value, and a vibrationally averaged model potential energy surface, obtained by averaging the stretching dependence over the ground vibrational motion of the CO molecule, have been constructed from the full data set. Adjustable parameters in each model potential energy surface have been determined through fitting a selected subset of pure rotational transition frequencies calculated for the (20)Ne-(12)C(12)O isotopolog to precisely known experimental values. Both potential energy surfaces provide calculated results for a wide range of available experimental microwave, millimeter-wave, and midinfrared Ne-CO transition frequencies that are generally far superior to those obtained using the best current literature potential energy surfaces. The vibrationally averaged CO ground state potential energy surface, employed together with a potential energy surface obtained from it by replacing the ground vibrational state average of the CO stretching dependence of the potential energy surface by an average over the first excited CO vibrational state, has been found to be particularly useful for computing and/or interpreting mid-IR transition frequencies in the Ne-CO dimer.
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Affiliation(s)
- Ashok K Dham
- Department of Physics, Punjabi University, Patiala 147002, India
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Sanchez-Fortún Stoker J, Dham AK, McCourt FRW, Dickinson AS. Accuracy of recent potential energy surfaces for the He–N2 interaction. II. Molecular beam scattering and bulk gas relaxation phenomena. J Chem Phys 2008; 128:214309. [DOI: 10.1063/1.2928805] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Dham AK, McCourt FRW, Dickinson AS. Accuracy of recent potential energy surfaces for the He–N2 interaction. I. Virial and bulk transport coefficients. J Chem Phys 2007; 127:054302. [PMID: 17688335 DOI: 10.1063/1.2753483] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
A new exchange-Coulomb semiempirical model potential energy surface for the He-N2 interaction has been developed. Together with two recent high-level ab initio potential energy surfaces, it has been tested for the reliability of its predictions of second-virial coefficients and bulk transport phenomena in binary mixtures of He and N2. The agreement with the relevant available measurements is generally within experimental uncertainty for the exchange-Coulomb surface and the ab initio surface of Patel et al. [J. Chem. Phys. 119, 909 (2003)], but with slightly poorer agreement for the earlier ab initio surface of Hu and Thakkar [J. Chem. Phys. 104, 2541 (1996)].
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Affiliation(s)
- Ashok K Dham
- Department of Chemistry, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada
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Hájíček J. A Review on Recent Developments in Syntheses of the Post-Secodine Indole Alkaloids. Part I: The Primary Alkaloid Types. ACTA ACUST UNITED AC 2004. [DOI: 10.1135/cccc20041681] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
This first part of a planned review on developments in the field of total and formal total synthesis of the post-secodine indole alkaloids concentrates on primary alkaloid types. It reviews the synthesis of secodine, aspidospermane, pseudoaspidospermane and ibogane alkaloids; andranginine is also included. It covers the literature from 1992-1993 up to approximately May 2004. A review with 179 references.
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