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Hütter M, Schöpfer G, Salzburger M, Beyer MK, Ončák M. Master equation modeling of water dissociation in small ionic water clusters: Ag +(H 2O) n , n = 4-6. RSC Adv 2024; 14:22185-22194. [PMID: 39005253 PMCID: PMC11244579 DOI: 10.1039/d4ra03518f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2024] [Accepted: 07/01/2024] [Indexed: 07/16/2024] Open
Abstract
We model temperature-dependent blackbody infrared radiative dissociation (BIRD) rate coefficients of Ag+(H2O) n , n = 4-6, a system with loosely bound water molecules. We employ a master equation modeling (MEM) approach with consideration of absorption and emission of blackbody radiation, comparing single and multiple-well descriptions. The unimolecular dissociation rate coefficients are obtained using the Rice-Ramsperger-Kassel-Marcus (RRKM) theory, employing two approaches to model the sum of states in the transition state, the rigid activated complex (RAC) and the phase space limit (PSL) approach. A genetic algorithm is used to find structures of low-lying isomers for the kinetic modeling. We show that the multiple-well MEM approach with PSL RRKM in the All Wells and Transition States Are Relevant (AWATAR) variant provides a reliable description of Ag+(H2O) n BIRD, in agreement with previously published experimental data. Higher-lying isomers contribute significantly to the overall dissociation rate coefficient, underlying the importance of the multiple-well ansatz in which all isomers are treated on the same footing.
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Affiliation(s)
- Michael Hütter
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck Technikerstraße 25 6020 Innsbruck Austria
| | - Gabriel Schöpfer
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck Technikerstraße 25 6020 Innsbruck Austria
| | - Magdalena Salzburger
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck Technikerstraße 25 6020 Innsbruck Austria
| | - Martin K Beyer
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck Technikerstraße 25 6020 Innsbruck Austria
| | - Milan Ončák
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck Technikerstraße 25 6020 Innsbruck Austria
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van der Linde C, Ončák M, Cunningham EM, Tang WK, Siu CK, Beyer MK. Surface or Internal Hydration - Does It Really Matter? JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2023; 34:337-354. [PMID: 36744598 PMCID: PMC9983018 DOI: 10.1021/jasms.2c00290] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/11/2022] [Revised: 01/26/2023] [Accepted: 01/26/2023] [Indexed: 06/18/2023]
Abstract
The precise location of an ion or electron, whether it is internally solvated or residing on the surface of a water cluster, remains an intriguing question. Subtle differences in the hydrogen bonding network may lead to a preference for one or the other. Here we discuss spectroscopic probes of the structure of gas-phase hydrated ions in combination with quantum chemistry, as well as H/D exchange as a means of structure elucidation. With the help of nanocalorimetry, we look for thermochemical signatures of surface vs internal solvation. Examples of strongly size-dependent reactivity are reviewed which illustrate the influence of surface vs internal solvation on unimolecular rearrangements of the cluster, as well as on the rate and product distribution of ion-molecule reactions.
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Affiliation(s)
- Christian van der Linde
- Institut
für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020Innsbruck, Austria
| | - Milan Ončák
- Institut
für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020Innsbruck, Austria
| | - Ethan M. Cunningham
- Institut
für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020Innsbruck, Austria
| | - Wai Kit Tang
- Institute
of Research Management and Services (IPPP), Research and Innovation
Management Complex, University of Malaya, Kuala Lumpur50603, Malaysia
| | - Chi-Kit Siu
- Department
of Chemistry, City University of Hong Kong, 83 Tat Chee Avenue, Kowloon Tong, Hong Kong SAR, PR China
| | - Martin K. Beyer
- Institut
für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020Innsbruck, Austria
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3
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Zhou T, Abe M, Zhang Y, Kudoh S, Mafuné F. Dissociative Adsorption of Water on CaMn 4O 5 Cationic Clusters. J Phys Chem A 2022; 126:8218-8224. [DOI: 10.1021/acs.jpca.2c06103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Tianyue Zhou
- Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, Komaba, Meguro-ku, Tokyo 153-8902, Japan
| | - Manami Abe
- Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, Komaba, Meguro-ku, Tokyo 153-8902, Japan
| | - Yufei Zhang
- Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, Komaba, Meguro-ku, Tokyo 153-8902, Japan
| | - Satoshi Kudoh
- Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, Komaba, Meguro-ku, Tokyo 153-8902, Japan
| | - Fumitaka Mafuné
- Department of Basic Science, Graduate School of Arts and Sciences, The University of Tokyo, Komaba, Meguro-ku, Tokyo 153-8902, Japan
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Heller J, Cunningham EM, Hartmann JC, van der Linde C, Ončák M, Beyer MK. Size-dependent H and H 2 formation by infrared multiple photon dissociation spectroscopy of hydrated vanadium cations, V +(H 2O) n, n = 3-51. Phys Chem Chem Phys 2022; 24:14699-14708. [PMID: 35438100 PMCID: PMC9215701 DOI: 10.1039/d2cp00833e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Infrared spectra of the hydrated vanadium cation (V+(H2O)n; n = 3–51) were measured in the O–H stretching region employing infrared multiple photon dissociation (IRMPD) spectroscopy. Spectral fingerprints, along with size-dependent fragmentation channels, were observed and rationalized by comparing to spectra simulated using density functional theory. Photodissociation leading to water loss was found for cluster sizes n = 3–7, consistent with isomers featuring intact water ligands. Loss of molecular hydrogen was observed as a weak channel starting at n = 8, indicating the advent of inserted isomers, HVOH+(H2O)n−1. The majority of ions for n = 8, however, are composed of two-dimensional intact isomers, concordant with previous infrared studies on hydrated vanadium. A third channel, loss of atomic hydrogen, is observed weakly for n = 9–11, coinciding with the point at which the H and H2O calculated binding energies become energetically competitive for intact isomers. A clear and sudden spectral pattern and fragmentation channel intensity at n = 12 suggest a structural change to inserted isomers. The H2 channel intensity decreases sharply and is not observed for n = 20 and 25–51. IRMPD spectra for clusters sizes n = 15–51 are qualitatively similar indicating no significant structural changes, and are thought to be composed of inserted isomers, consistent with recent electronic spectroscopy experiments. Infrared multiple photon dissociation spectra of V+(H2O)n depend on experiment conditions, with strong kinetic shift effects for large clusters.![]()
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Affiliation(s)
- Jakob Heller
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria.
| | - Ethan M Cunningham
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria.
| | - Jessica C Hartmann
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria.
| | - Christian van der Linde
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria.
| | - Milan Ončák
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria.
| | - Martin K Beyer
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria.
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5
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Fabrication and characterization of pore-selective silver-functionalized honeycomb-patterned porous film and its application for antibacterial activity. POLYMER 2022. [DOI: 10.1016/j.polymer.2022.124646] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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6
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Saputri WD, Pranowo HD, Hofer TS. Can’t we negotiate the importance of electron correlation? HF vs RIMP2 in ab initio quantum mechanical charge field molecular dynamics simulations of Cu+ in pure liquid ammonia. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2021.118286] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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7
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Single-Step Pore-Selective Silver-Functionalized Honeycomb-Patterned Porous Polystyrene Film Using a Modified Breath Figure Method. Macromol Res 2021. [DOI: 10.1007/s13233-021-9070-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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8
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Demissie EG, Lam WK, Thompson H, Tang WK, Siu CK. Decomposition of nitrous oxide in hydrated cobalt(I) clusters: a theoretical insight into the mechanistic roles of ligand-binding modes. Phys Chem Chem Phys 2021; 23:16816-16826. [PMID: 34323905 DOI: 10.1039/d1cp01820e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Hydrated cobalt(i) cluster ions, [Co(H2O)n]+, can decompose the inert nitrous oxide molecule, N2O. Density functional theory suggests that N2O can anchor to Co+ of [Co(N2O)(H2O)n]+ through either O end-on (η1-OL) or N end-on (η1-NL) coordinate mode. The latter is thermodynamically more favorable resulting from a subtle π backdonation from Co+ to N2O. N2O decomposition involves two major processes: (1) redox reaction and (2) N-O bond dissociation. The initial activation of N2O through an electron transfer from Co+ to N2O yields anionic N2O-, which binds to the metal center of [Co2+(N2O-)(H2O)n] also through either O end-on (η1-O) or N end-on (η1-N) mode and is stabilized by water molecules through hydrogen bonding. From η1-O, subsequent N-O bond dissociation to liberate N2, producing [CoO(H2O)n]+, is straightforward via a mechanism that is commonplace for typical metal-catalyzed N2O decompositions. Unexpectedly, the N-O bond dissociation directly from η1-N is also possible and eliminates both N2 and OH, explaining the formation of [CoOH(H2O)n]+ as observed in a previous experimental study. Interestingly, formation of [CoO(H2O)n]+ is kinetically controlled by the initial redox process between Co+ and the O-bound N2O, the activation barriers of which in large water clusters (n ≥ 14) are higher than that of the unexpected N-O bond dissociation from the N-bound structure forming [CoOH(H2O)n]+. This theoretical discovery implies that in the present of water molecules, the metal-catalyzed N2O decomposition starting from an O-bound metal complex is not mandatory.
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Affiliation(s)
- Ephrem G Demissie
- Department of Chemistry, City University of Hong Kong, Tat Chee Avenue, Kowloon Tong, Hong Kong SAR, P. R. China.
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Jian X, Xin K, Hu J, Zhang L, Wang X, Wang G. Infrared Spectroscopy of Solvation in the TaO 2+ Hydrolysis Reaction. J Phys Chem A 2021; 125:5054-5060. [PMID: 34085828 DOI: 10.1021/acs.jpca.1c03185] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The solvent effect of the TaO2+ reaction with water molecules in the gas phase is examined. Stoichiometric TaO2(H2O)n+ cations are generated by the laser vaporization of a tantalum metal target in the pulsed supersonic expansion of H2O/He mixed gas. The infrared photodissociation spectra of TaO2(H2O)n+ cations are measured using the argon-tagging technology in the 2800-3850 cm-1 region. Density functional theory calculations are carried out to identify the observed infrared bands and elucidate the reaction mechanism. In the TaO2+ reaction with one H2O molecule, both the hydrated adduct H2O-TaO2+ and dihydroxide TaO(OH)2+ are generated. The coexistence of tetrahydroxide Ta(OH)4+ and hydrated dihydroxide H2O-TaO(OH)2+ is seen when the second H2O molecule is involved. However, only the hydrated H2O-Ta(OH)4+ product is obtained in the TaO2 reaction with three H2O molecules. Theoretical calculations indicate that in the reaction, the formation of a six-membered cyclic transition state through the hydrogen bond lowers the energy barrier significantly, which promotes the transfer of the hydrogen of hydrated adducts to generate di- and tetrahydroxides.
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Affiliation(s)
- Xianhui Jian
- School of Chemical Science and Engineering, Shanghai Key Lab of Chemical Assessment and Sustainability, Tongji University, 1239 Siping Road, Shanghai 200092, China
| | - Ke Xin
- School of Chemical Science and Engineering, Shanghai Key Lab of Chemical Assessment and Sustainability, Tongji University, 1239 Siping Road, Shanghai 200092, China
| | - Jin Hu
- School of Chemical Science and Engineering, Shanghai Key Lab of Chemical Assessment and Sustainability, Tongji University, 1239 Siping Road, Shanghai 200092, China
| | - Luning Zhang
- School of Chemical Science and Engineering, Shanghai Key Lab of Chemical Assessment and Sustainability, Tongji University, 1239 Siping Road, Shanghai 200092, China
| | - Xuefeng Wang
- School of Chemical Science and Engineering, Shanghai Key Lab of Chemical Assessment and Sustainability, Tongji University, 1239 Siping Road, Shanghai 200092, China
| | - Guanjun Wang
- Department of Chemistry, Collaborative Innovation Center of Chemistry for Energy Materials, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University, 2005 Songhu Road, Shanghai 200438, China
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10
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Asymmetric Solvation of the Zinc Dimer Cation Revealed by Infrared Multiple Photon Dissociation Spectroscopy of Zn 2+(H 2O) n ( n = 1-20). Int J Mol Sci 2021; 22:ijms22116026. [PMID: 34199627 PMCID: PMC8199724 DOI: 10.3390/ijms22116026] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2021] [Revised: 05/20/2021] [Accepted: 05/26/2021] [Indexed: 11/17/2022] Open
Abstract
Investigating metal-ion solvation—in particular, the fundamental binding interactions—enhances the understanding of many processes, including hydrogen production via catalysis at metal centers and metal corrosion. Infrared spectra of the hydrated zinc dimer (Zn2+(H2O)n; n = 1–20) were measured in the O–H stretching region, using infrared multiple photon dissociation (IRMPD) spectroscopy. These spectra were then compared with those calculated by using density functional theory. For all cluster sizes, calculated structures adopting asymmetric solvation to one Zn atom in the dimer were found to lie lower in energy than structures adopting symmetric solvation to both Zn atoms. Combining experiment and theory, the spectra show that water molecules preferentially bind to one Zn atom, adopting water binding motifs similar to the Zn+(H2O)n complexes studied previously. A lower coordination number of 2 was observed for Zn2+(H2O)3, evident from the highly red-shifted band in the hydrogen bonding region. Photodissociation leading to loss of a neutral Zn atom was observed only for n = 3, attributed to a particularly low calculated Zn binding energy for this cluster size.
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11
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Marks JH, Miliordos E, Duncan MA. Infrared spectroscopy of RG-Co +(H 2O) complexes (RG = Ar, Ne, He): The role of rare gas "tag" atoms. J Chem Phys 2021; 154:064306. [PMID: 33588546 DOI: 10.1063/5.0041069] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
RGn-Co+(H2O) cation complexes (RG = Ar, Ne, He) are generated in a supersonic expansion by pulsed laser vaporization. Complexes are mass-selected using a time-of-flight spectrometer and studied with infrared laser photodissociation spectroscopy, measuring the respective mass channels corresponding to the elimination of the rare gas "tag" atom. Spectral patterns and theory indicate that the structures of the ions with a single rare gas atom have this bound to the cobalt cation opposite the water moiety in a near-C2v arrangement. The O-H stretch vibrations of the complex are shifted compared to those of water because of the metal cation charge-transfer interaction; these frequencies also vary systematically with the rare gas atom attached. The efficiencies of photodissociation also vary with the rare gas atoms because of their widely different binding energies to the cobalt cation. The spectrum of the argon complex could only be measured when at least three argon atoms were attached. In the case of the helium complex, the low binding energy allows the spectra to be measured for the low-frequency H-O-H scissors bending mode and for the O-D stretches of the deuterated analog. The partially resolved rotational structure for the antisymmetric O-H and O-D stretches reveals the temperature of these complexes (6 K) and establishes the electronic ground state. The helium complex has the same 3B1 ground state as the tag-free complex studied previously by Metz and co-workers ["Dissociation energy and electronic and vibrational spectroscopy of Co+(H2O) and its isotopomers," J. Phys. Chem. A 117, 1254 (2013)], but the A rotational constant is contaminated by vibrational averaging from the bending motion of the helium.
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Affiliation(s)
- Joshua H Marks
- Department of Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Evangelos Miliordos
- Department of Chemistry and Biochemistry, Auburn University, Auburn, Alabama 36849, USA
| | - Michael A Duncan
- Department of Chemistry, University of Georgia, Athens, Georgia 30602, USA
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Cunningham EM, Taxer T, Heller J, Ončák M, van der Linde C, Beyer MK. Microsolvation of Zn cations: infrared multiple photon dissociation spectroscopy of Zn +(H 2O) n (n = 2-35). Phys Chem Chem Phys 2021; 23:3627-3636. [PMID: 33524092 DOI: 10.1039/d0cp06112c] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The structures, along with solvation evolution, of size-selected Zn+(H2O)n (n = 2-35) complexes have been determined by combining infrared multiple photon photodissociation (IRMPD) spectroscopy and density functional theory. The infrared spectra were recorded in the O-H stretching region, revealing varying shifts in band position due to different water binding motifs. Concordant with previous studies, a coordination number of 3 is observed, determined by the sudden appearance of a broad, red-shifted band in the hydrogen bonding region for clusters n > 3. The coordination number of 3 seems to be retained even for the larger clusters, due to incoming ligands experiencing significant repulsion from the Zn+ valence 4s electron. Evidence of spectrally distinct single- and double-acceptor sites are presented for medium-sized clusters, 4 ≤n≤ 7, however for larger clusters, n≥ 8, the hydrogen bonding region is dominated by a broad, unresolved band, indicative of the increased number of second and third coordination sphere ligands. No evidence of a solvated, six-fold coordinated Zn2+ ion/solvated electron pair is present in the spectra.
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Affiliation(s)
- Ethan M Cunningham
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria.
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13
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Xin K, Chen Y, Zhang L, Xu B, Wang X, Wang G. Infrared photodissociation spectroscopic investigation on VO+ and NbO+ hydrolysis catalyzed by water molecules. Phys Chem Chem Phys 2021; 23:528-535. [DOI: 10.1039/d0cp04448b] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
We investigate the hydrolysis of vanadium/niobium monoxide cation (VO+/NbO+) with water molecules in the gas phase.
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Affiliation(s)
- Ke Xin
- School of Chemical Science and Engineering, Shanghai Key Lab of Chemical Assessment and Sustainability, Tongji University
- Shanghai
- China
| | - Yinjuan Chen
- School of Chemical Science and Engineering, Shanghai Key Lab of Chemical Assessment and Sustainability, Tongji University
- Shanghai
- China
| | - Luning Zhang
- School of Chemical Science and Engineering, Shanghai Key Lab of Chemical Assessment and Sustainability, Tongji University
- Shanghai
- China
| | - Bing Xu
- School of Chemical Science and Engineering, Shanghai Key Lab of Chemical Assessment and Sustainability, Tongji University
- Shanghai
- China
| | - Xuefeng Wang
- School of Chemical Science and Engineering, Shanghai Key Lab of Chemical Assessment and Sustainability, Tongji University
- Shanghai
- China
| | - Guanjun Wang
- Department of Chemistry, Collaborative Innovation Center of Chemistry for Energy Materials, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Fudan University
- Shanghai 200438
- China
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14
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Busato M, Melchior A, Migliorati V, Colella A, Persson I, Mancini G, Veclani D, D'Angelo P. Elusive Coordination of the Ag + Ion in Aqueous Solution: Evidence for a Linear Structure. Inorg Chem 2020; 59:17291-17302. [PMID: 33233885 DOI: 10.1021/acs.inorgchem.0c02494] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
X-ray absorption spectroscopy (XAS) has been employed to study the coordination of the Ag+ ion in aqueous solution. The conjunction of extended X-ray absorption fine structure (EXAFS) and X-ray absorption near-edge structure (XANES) data analysis provided results suggesting the preference for a first shell linear coordination with a mean Ag-O bond distance of 2.34(2) Å, different from the first generally accepted tetrahedral model with a longer mean Ag-O bond distance. Ab initio molecular dynamics simulations with the Car-Parrinello approach (CPMD) were also performed and were able to describe the coordination of the hydrated Ag+ ion in aqueous solution in very good agreement with the experimental data. The high sensitivity for the closest environment of the photoabsorber of the EXAFS and XANES techniques, together with the long-range information provided by CPMD and large-angle X-ray scattering (LAXS), allowed us to reconstruct the three-dimensional model of the coordination geometry around the Ag+ ion in aqueous solution. The obtained results from experiments and theoretical simulations provided a complex picture with a certain amount of water molecules with high configurational disorder at distances comprised between the first and second hydration spheres. This evidence may have caused the proliferation of the coordination numbers that have been proposed so far for Ag+ in water. Altogether these data show how the description of the hydration of the Ag+ ion in aqueous solution can be complex, differently from other metal species where hydration structures can be described by clusters with well-defined geometries. This diffuse hydration shell causes the Ag-O bond distance in the linear [Ag(H2O)2]+ ion to be ca. 0.2 Å longer than in isolated ions in solid state.
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Affiliation(s)
- Matteo Busato
- Dipartimento Politecnico di Ingegneria e Architettura (DPIA), Laboratori di Chimica, Università di Udine, via delle Scienze 99, 33100 Udine, Italy.,Dipartimento di Chimica, Università di Roma "La Sapienza", P.le A. Moro 5, 00185 Roma, Italy
| | - Andrea Melchior
- Dipartimento Politecnico di Ingegneria e Architettura (DPIA), Laboratori di Chimica, Università di Udine, via delle Scienze 99, 33100 Udine, Italy
| | - Valentina Migliorati
- Dipartimento di Chimica, Università di Roma "La Sapienza", P.le A. Moro 5, 00185 Roma, Italy
| | - Andrea Colella
- Dipartimento di Chimica, Università di Roma "La Sapienza", P.le A. Moro 5, 00185 Roma, Italy
| | - Ingmar Persson
- Department of Molecular Sciences, Swedish University of Agricultural Sciences (SLU), SE-750 07 Uppsala, Sweden
| | - Giordano Mancini
- Centro HPC, Scuola Normale Superiore, Piazza San Silvestro 12, 56125 Pisa, Italy
| | - Daniele Veclani
- Dipartimento Politecnico di Ingegneria e Architettura (DPIA), Laboratori di Chimica, Università di Udine, via delle Scienze 99, 33100 Udine, Italy
| | - Paola D'Angelo
- Dipartimento di Chimica, Università di Roma "La Sapienza", P.le A. Moro 5, 00185 Roma, Italy
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15
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Wu H, Or VW, Gonzalez-Calzada S, Grassian VH. CuS nanoparticles in humid environments: adsorbed water enhances the transformation of CuS to CuSO 4. NANOSCALE 2020; 12:19350-19358. [PMID: 32940281 DOI: 10.1039/d0nr05934j] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Covellite copper sulfide nanoparticles (CuS NPs) have attracted immense research interest due to their widespread use in a range of biological and energy applications. As such, it is crucial to understand the transformations of these nanomaterials and how these transformations influence the behavior of these nanoparticles in environmental and biological systems. This study specifically focuses on understanding the role of water vapor and adsorbed water in the transformation of CuS NP surfaces to CuSO4 in humid environments. Surface sulfide ions are oxidized to sulfate by oxygen in the presence of water vapor, as detected by atomic force microscopy based photothermal infrared spectroscopy (AFM-PTIR) and in situ attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectroscopy. These results show that the transformation of CuS to CuSO4 is highly dependent on relative humidity (RH). While sulfide to sulfate conversion is not observed to a great extent at low RH (<20%), there is significant conversion at higher RH (>80%). X-ray photoelectron spectroscopy (XPS) analysis confirms that sulfide is irreversibly oxidized to sulfate. Furthermore, it shows that initially, the Cu ions possess the original oxidation state similar to the original covellite, i.e. Cu+, but they are oxidized to Cu2+ at higher RH. The formation of CuSO4 has also been confirmed by HRTEM. These analyses show that adsorbed water on the NP surfaces enhances the conversion of sulfide to sulfate and the oxidation of Cu+ to Cu2+ in the presence of molecular oxygen.
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Affiliation(s)
- Haibin Wu
- Department of Chemistry & Biochemistry, University of California San Diego, La Jolla, CA 92093, USA.
| | - Victor W Or
- Department of Chemistry & Biochemistry, University of California San Diego, La Jolla, CA 92093, USA.
| | | | - Vicki H Grassian
- Department of Chemistry & Biochemistry, University of California San Diego, La Jolla, CA 92093, USA. and Departments of Nanoengineering, University of California San Diego, La Jolla, CA 92093, USA and Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093, USA
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16
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Pye CC, Whynot DCM, Corbeil CR, Mercer DJW. Desymmetrization in geometry optimization: application to an ab initio study of copper(I) hydration. PURE APPL CHEM 2020. [DOI: 10.1515/pac-2019-1118] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
Group theoretical arguments are used to find the subgroup corresponding to symmetry reduction along a particular irreducible representation of a group. The results are used to guide the search for stationary points on the potential energy surface of hydrated copper(I) ion at the HF/6-31G∗, HF/6-31+G∗, HF/6-311+G∗, MP2/6-31G∗, MP2/6-31+G∗, MP2/6-311+G∗, B3LYP/6-31G∗, B3LYP/6-31+G∗, and B3LYP/6-311+G∗ levels. The better levels give the most stable coordination number of two. The effect of desymmetrization on the Cu-O distances and stretching frequencies has been examined.
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Affiliation(s)
- Cory C. Pye
- Department of Chemistry , Saint Mary’s University , 923 Robie Street , Halifax , B3H 3C3, NS , Canada
| | - Daniel C. M. Whynot
- Department of Chemistry , Saint Mary’s University , 923 Robie Street , Halifax , B3H 3C3, NS , Canada
| | - Christopher R. Corbeil
- Department of Chemistry , Saint Mary’s University , 923 Robie Street , Halifax , B3H 3C3, NS , Canada
| | - Darren J. W. Mercer
- Department of Chemistry , Saint Mary’s University , 923 Robie Street , Halifax , B3H 3C3, NS , Canada
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17
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Carnegie PD, Marks JH, Brathwaite AD, Ward TB, Duncan MA. Microsolvation in V +(H 2O) n Clusters Studied with Selected-Ion Infrared Spectroscopy. J Phys Chem A 2020; 124:1093-1103. [PMID: 31961153 DOI: 10.1021/acs.jpca.9b11275] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Gas-phase ion-molecule clusters of the form V+(H2O)n (n = 1-30) are produced by laser vaporization in a supersonic expansion. These ions are analyzed and mass-selected with a time-of-flight mass spectrometer and investigated with infrared laser photodissociation spectroscopy. The small clusters (n ≤ 7) are studied with argon tagging, while the larger clusters are studied via the elimination of water molecules. The vibrational spectra for the small clusters include only free O-H stretching vibrations, while larger clusters exhibit redshifted hydrogen bonding vibrations. The spectral patterns reveal that the coordination around V+ ions is completed with four water molecules. A symmetric square-planar structure forms for the n = 4 ion, and this becomes the core ion in larger structures. Clusters up to n = 8 have mostly two-dimensional structures, but hydrogen bonding networks evolve to three-dimensional structures in larger clusters. The free O-H vibration of acceptor-acceptor-donor (AAD)-coordinated surface molecules converges to a frequency near that of bulk water by the cluster size of n = 30. However, the splitting of this vibration for AAD- versus AD-coordinated molecules is still different compared to other singly charged or doubly charged cation-water clusters. This indicates that cation identity and charge-site location in the cluster can produce discernable spectral differences for clusters in this size range.
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Affiliation(s)
- Prosser D Carnegie
- Department of Chemistry , University of Georgia , Athens , Georgia 30602 , United States
| | - Joshua H Marks
- Department of Chemistry , University of Georgia , Athens , Georgia 30602 , United States
| | - Antonio D Brathwaite
- Department of Chemistry , Emory University , Atlanta , Georgia 30322 , United States
| | - Timothy B Ward
- Department of Chemistry , University of Georgia , Athens , Georgia 30602 , United States
| | - Michael A Duncan
- Department of Chemistry , University of Georgia , Athens , Georgia 30602 , United States
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18
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Chen Y, Jin J, Xin K, Yu W, Xing X, Wang X, Wang G. Infrared photodissociation spectroscopic studies of ScO(H2O)n=1–3Ar+ cluster cations: solvation induced reaction of ScO+ and water. Phys Chem Chem Phys 2019; 21:15639-15646. [DOI: 10.1039/c9cp02171j] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We investigate the gaseous ScO(H2O)1–3Ar+ cations prepared by laser vaporization coupled with supersonic molecular beam using infrared photodissociation spectroscopy in the O–H stretching region.
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Affiliation(s)
- Yinjuan Chen
- School of Chemical Science and Engineering
- Shanghai Key Lab of Chemical Assessment and Sustainability
- Tongji University
- Shanghai
- China
| | - Jiaye Jin
- Department of Chemistry
- Collaborative Innovation Center of Chemistry for Energy Materials
- Fudan University
- Shanghai 200438
- China
| | - Ke Xin
- School of Chemical Science and Engineering
- Shanghai Key Lab of Chemical Assessment and Sustainability
- Tongji University
- Shanghai
- China
| | - Wenjie Yu
- School of Chemical Science and Engineering
- Shanghai Key Lab of Chemical Assessment and Sustainability
- Tongji University
- Shanghai
- China
| | - Xiaopeng Xing
- School of Chemical Science and Engineering
- Shanghai Key Lab of Chemical Assessment and Sustainability
- Tongji University
- Shanghai
- China
| | - Xuefeng Wang
- School of Chemical Science and Engineering
- Shanghai Key Lab of Chemical Assessment and Sustainability
- Tongji University
- Shanghai
- China
| | - Guanjun Wang
- Department of Chemistry
- Collaborative Innovation Center of Chemistry for Energy Materials
- Fudan University
- Shanghai 200438
- China
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Li HY, Lee CS, Kim DH, Lee JH. Flexible Room-Temperature NH 3 Sensor for Ultrasensitive, Selective, and Humidity-Independent Gas Detection. ACS APPLIED MATERIALS & INTERFACES 2018; 10:27858-27867. [PMID: 30051712 DOI: 10.1021/acsami.8b09169] [Citation(s) in RCA: 77] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Ammonia (NH3) is an irritant gas with a unique pungent odor; sub-parts per million-level breath ammonia is a medical biomarker for kidney disorders and Helicobacter pylori bacteria-induced stomach infections. The humidity varies in both ambient environment and exhaled breath, and thus humidity dependence of gas-sensing characteristics is a great obstacle for real-time applications. Herein, flexible, humidity-independent, and room-temperature ammonia sensors are fabricated by the thermal evaporation of CuBr on a polyimide substrate and subsequent coating of a nanoscale moisture-blocking CeO2 overlayer by electron-beam evaporation. CuBr sensors coated with a 100 nm-thick CeO2 overlayer exhibits an ultrahigh response (resistance ratio) of 68 toward 5 ppm ammonia with excellent gas selectivity, rapid response, reversibility, and humidity-independent sensing characteristics at room temperature. In addition, the sensing performance remains stable after repetitive bending and long-term operation. Moreover, the sensors exhibit significant response to the simulated exhaled breath of patients with H. pylori infection; the simulated breath contains 50 ppb NH3. The sensors thus show promising potential in detecting sub-parts per million-level NH3, regardless of humidity fluctuations, which can open up new applications in wearable devices for in situ medical diagnosis and indoor/outdoor environment monitoring.
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Affiliation(s)
- Hua-Yao Li
- Department of Materials Science and Engineering , Korea University , Seoul 02841 , Republic of Korea
| | - Chul-Soon Lee
- Department of Materials Science and Engineering , Korea University , Seoul 02841 , Republic of Korea
| | - Do Hong Kim
- Department of Materials Science and Engineering , Korea University , Seoul 02841 , Republic of Korea
| | - Jong-Heun Lee
- Department of Materials Science and Engineering , Korea University , Seoul 02841 , Republic of Korea
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20
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Song X, Li S, Jiang Z, Zhang Y. Theoretical study on structures and infrared spectroscopy of Cu2+(H2O)Ar n (n = 1–4). RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY A 2017. [DOI: 10.1134/s003602441709031x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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21
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Ward TB, Miliordos E, Carnegie PD, Xantheas SS, Duncan MA. Ortho-para interconversion in cation-water complexes: The case of V+(H2O) and Nb+(H2O) clusters. J Chem Phys 2017; 146:224305. [DOI: 10.1063/1.4984826] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- T. B. Ward
- Department of Chemistry, University of Georgia, Athens, Georgia 30602-2556, USA
| | - E. Miliordos
- Advanced Computing, Mathematics and Data Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K1-83, Richland, Washington 99352, USA
| | - P. D. Carnegie
- Department of Chemistry, University of Georgia, Athens, Georgia 30602-2556, USA
| | - S. S. Xantheas
- Advanced Computing, Mathematics and Data Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K1-83, Richland, Washington 99352, USA
| | - M. A. Duncan
- Department of Chemistry, University of Georgia, Athens, Georgia 30602-2556, USA
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Herr JD, Steele RP. Signatures of Size-Dependent Structural Patterns in Hydrated Copper(I) Clusters, Cu +(H 2O) n=1-10. J Phys Chem A 2016; 120:10252-10263. [PMID: 27981838 DOI: 10.1021/acs.jpca.6b10346] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
The isomers of a hydrated Cu(I) ion with n = 1-10 water molecules were investigated by using ab initio quantum chemistry and an automated isomer-search algorithm. The electronic structure and vibrational spectra of the hundreds of resulting isomers were used to analyze the source of the observed bonding patterns. A structural evolution from dominantly two-coordinate structures (n = 1-4) toward a mixture of two- and three-coordinate structures was observed at n = 5-6, where the stability provided by expanded hydrogen-bonding was competitive with the dominantly electrostatic interaction between the water ligand and remaining binding sites of the metal ion. Further hydration (n = 7-10) led to a mixture of three- and four-coordinate structures. The metal ion was found, through spectroscopic signatures, to appreciably perturb the O-H bonds of even third-shell water molecules, which highlighted the ability of this nominally simple ion to partially activate the surrounding water network.
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Affiliation(s)
- Jonathan D Herr
- Department of Chemistry, University of Utah , 315 South 1400 East, Salt Lake City, Utah 84112, United States and.,Henry Eyring Center for Theoretical Chemistry, University of Utah , 315 South 1400 East, Salt Lake City, Utah 84112, United States
| | - Ryan P Steele
- Department of Chemistry, University of Utah , 315 South 1400 East, Salt Lake City, Utah 84112, United States and.,Henry Eyring Center for Theoretical Chemistry, University of Utah , 315 South 1400 East, Salt Lake City, Utah 84112, United States
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23
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Ward T, Carnegie P, Duncan M. Infrared spectroscopy of the Ti(H2O)Ar+ ion–molecule complex: Electronic state switching induced by argon. Chem Phys Lett 2016. [DOI: 10.1016/j.cplett.2016.04.065] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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24
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Jin H, Goyal P, Das AK, Gaus M, Meuwly M, Cui Q. Copper Oxidation/Reduction in Water and Protein: Studies with DFTB3/MM and VALBOND Molecular Dynamics Simulations. J Phys Chem B 2015; 120:1894-910. [PMID: 26624804 DOI: 10.1021/acs.jpcb.5b09656] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We apply two recently developed computational methods, DFTB3 and VALBOND, to study copper oxidation/reduction processes in solution and protein. The properties of interest include the coordination structure of copper in different oxidation states in water or in a protein (plastocyanin) active site, the reduction potential of the copper ion in different environments, and the environmental response to copper oxidation. The DFTB3/MM and VALBOND simulation results are compared to DFT/MM simulations and experimental results whenever possible. For a copper ion in aqueous solution, DFTB3/MM results are generally close to B3LYP/MM with a medium basis, including both solvation structure and reduction potential for Cu(II); for Cu(I), however, DFTB3/MM finds a two-water coordination, similar to previous Born-Oppenheimer molecular dynamics simulations using BLYP and HSE, whereas B3LYP/MM leads to a tetrahedron coordination. For a tetraammonia copper complex in aqueous solution, VALBOND and DFTB3/MM are consistent in terms of both structural and dynamical properties of solvent near copper for both oxidation states. For copper reduction in plastocyanin, DFTB3/MM simulations capture the key properties of the active site, and the computed reduction potential and reorganization energy are in fair agreement with experiment, especially when the periodic boundary condition is used. Overall, the study supports the value of VALBOND and DFTB3(/MM) for the analysis of fundamental copper redox chemistry in water and protein, and the results also help highlight areas where further improvements in these methods are desirable.
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Affiliation(s)
- Haiyun Jin
- Department of Chemistry, University of Wisconsin-Madison , 1101 University Avenue, Madison, Wisconsin 53706, United States
| | - Puja Goyal
- Department of Chemistry, University of Wisconsin-Madison , 1101 University Avenue, Madison, Wisconsin 53706, United States
| | - Akshaya Kumar Das
- Department of Chemistry, University of Basel , Klingelbergstrasse 80, 4056 Basel, Switzerland
| | - Michael Gaus
- Department of Chemistry, University of Wisconsin-Madison , 1101 University Avenue, Madison, Wisconsin 53706, United States
| | - Markus Meuwly
- Department of Chemistry, University of Basel , Klingelbergstrasse 80, 4056 Basel, Switzerland
| | - Qiang Cui
- Department of Chemistry, University of Wisconsin-Madison , 1101 University Avenue, Madison, Wisconsin 53706, United States
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25
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Kanjana K, Courtin B, MacConnell A, Bartels DM. Reactions of Hexa-aquo Transition Metal Ions with the Hydrated Electron up to 300 °C. J Phys Chem A 2015; 119:11094-104. [DOI: 10.1021/acs.jpca.5b08812] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Kotchaphan Kanjana
- Notre Dame Radiation Laboratory & Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556 United States
| | - Bruce Courtin
- Notre Dame Radiation Laboratory & Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556 United States
| | - Ashley MacConnell
- Notre Dame Radiation Laboratory & Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556 United States
| | - David M. Bartels
- Notre Dame Radiation Laboratory & Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556 United States
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26
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Ke H, Lisy JM. Influence of hydration on ion-biomolecule interactions: M(+)(indole)(H2O)(n) (M = Na, K; n = 3-6). Phys Chem Chem Phys 2015; 17:25354-64. [PMID: 26397000 DOI: 10.1039/c5cp01565k] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The indole functional group can be found in many biologically relevant molecules, such as neurotransmitters, pineal hormones and medicines. Indole has been used as a tractable model to study the hydration structures of biomolecules as well as the interplay of non-covalent interactions within ion-biomolecule-water complexes, which largely determine their structure and dynamics. With three potential binding sites: above the six- or five-member ring, and the N-H group, the competition between π and hydrogen bond interactions involves multiple locations. Electrostatic interactions from monovalent cations are in direct competition with hydrogen bonding interactions, as structural configurations involving both direct cation-indole interactions and cation-water-indole bridging interactions were observed. The different charge densities of Na(+) and K(+) give rise to different structural conformers at the same level of hydration. Infrared spectra with parallel hybrid functional-based calculations and Gibbs free energy calculations revealed rich structural insights into the Na(+)/K(+)(indole)(H2O)3-6 cluster ion complexes. Isotopic (H/D) analyses were applied to decouple the spectral features originating from the OH and NH stretches. Results showed no evidence of direct interaction between water and the NH group of indole (via a σ-hydrogen bond) at current levels of hydration with the incorporation of cations. Hydrogen bonding to a π-system, however, was ubiquitous at hydration levels between two and five.
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Affiliation(s)
- Haochen Ke
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.
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27
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Cooper RJ, Heiles S, Williams ER. Effects of electronic structure on the hydration of PbNO3(+) and SrNO3(+) ion pairs. Phys Chem Chem Phys 2015; 17:15963-75. [PMID: 26028325 DOI: 10.1039/c5cp01859e] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Hydration of PbNO3(+) and SrNO3(+) with up to 30 water molecules was investigated with infrared photodissociation (IRPD) spectroscopy and with theory. These ions are the same size, yet the IRPD spectra of these ion pairs for n = 2-8 are significantly different. Bands in the bonded O-H region (∼3000-3550 cm(-1)) indicate that the onset of a second hydration shell begins at n = 5 for PbNO3(+) and n = 6 for SrNO3(+). Spectra for [PbNO3](+)(H2O)2-5 and [SrNO3](+)(H2O)3-6 indicate that the structures of clusters with Pb(ii) are hemidirected with a void in the coordinate sphere. A natural bond orbital analysis of [PbNO3](+)(H2O)5 indicates that the anisotropic solvation of the ion is due to a region of asymmetric electron density on Pb(ii) that can be explained by charge transfer from the nitrate and water ligands into unoccupied p-orbitals on Pb(ii). There are differences in the IRPD spectra of PbNO3(+) and SrNO3(+) with up to 25 water molecules attached. IR intensity in the bonded O-H region is blue-shifted by ∼50 cm(-1) in nanodrops containing SrNO3(+) compared to those containing PbNO3(+), indicative of a greater perturbation of the water H-bond network by strontium. The free O-H stretches of surface water molecules in nanodrops containing 10, 15, 20, and 25 water molecules are red-shifted by ∼3-8 cm(-1) for PbNO3(+) compared to those for SrNO3(+), consistent with more charge transfer between water molecules and Pb(ii). These results demonstrate that the different electronic structure of these ions significantly influences how they are solvated.
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Affiliation(s)
- Richard J Cooper
- Department of Chemistry, University of California, Berkeley, California 94720-1460, USA.
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28
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Frank P, Benfatto M, Qayyam M, Hedman B, Hodgson KO. A high-resolution XAS study of aqueous Cu(II) in liquid and frozen solutions: pyramidal, polymorphic, and non-centrosymmetric. J Chem Phys 2015; 142:084310. [PMID: 25725734 PMCID: PMC4349298 DOI: 10.1063/1.4908266] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2014] [Accepted: 02/04/2015] [Indexed: 11/15/2022] Open
Abstract
High-resolution EXAFS (k = 18 Å(-1)) and MXAN XAS analyses show that axially elongated square pyramidal [Cu(H2O)5](2+) dominates the structure of Cu(II) in aqueous solution, rather than 6-coordinate JT-octahedral [Cu(H2O)6](2+). Freezing produced a shoulder at 8989.6 eV on the rising XAS edge and an altered EXAFS spectrum, while 1s → 3d transitions remained invariant in energy position and intensity. Core square pyramidal [Cu(H2O)5](2+) also dominates frozen solution. Solvation shells were found at ∼3.6 Å (EXAFS) or ∼3.8 Å (MXAN) in both liquid and frozen phases. However, MXAN analysis revealed that about half the time in liquid solution, [Cu(H2O)5](2+) associates with an axially non-bonding 2.9 Å water molecule. This distant water apparently organizes the solvation shell. When the 2.9 Å water molecule is absent, the second shell is undetectable to MXAN. The two structural arrangements may represent energetic minima of fluxional dissolved aqueous [Cu(H2O)5](2+). The 2.9 Å trans-axial water resolves an apparent conflict of the [Cu(H2O)5](2+) core model with a dissociational exchange mechanism. In frozen solution, [Cu(H2O)5](2+) is associated with either a 3.0 Å axial non-bonded water molecule or an axial ClO4(-) at 3.2 Å. Both structures are again of approximately equal presence. When the axial ClO4(-) is present, Cu(II) is ∼0.5 Å above the mean O4 plane. This study establishes [Cu(H2O)5](2+) as the dominant core structure for Cu(II) in water solution, and is the first to both empirically resolve multiple extended solution structures for fluxional [Cu(H2O)5](2+) and to provide direct evidence for second shell dynamics.
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Affiliation(s)
- Patrick Frank
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
| | - Maurizio Benfatto
- Laboratori Nazionali di Frascati-INFN, P.O. Box 13, 00044 Frascati, Italy
| | - Munzarin Qayyam
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
| | - Britt Hedman
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, California 94025, USA
| | - Keith O Hodgson
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
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29
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Shishido R, Li YC, Tsai CW, Bing D, Fujii A, Kuo JL. An infrared spectroscopic and theoretical study on (CH3)3N–H+–(H2O)n, n = 1–22: highly polarized hydrogen bond networks of hydrated clusters. Phys Chem Chem Phys 2015; 17:25863-76. [DOI: 10.1039/c5cp01487e] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Highly polarized water networks are found in the micro hydaration of protonated trimethylamine.
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Affiliation(s)
- Ryunosuke Shishido
- Department of Chemistry
- Graduate School of Science
- Tohoku University
- Sendai 980-8578
- Japan
| | - Ying-Cheng Li
- Department of Physics
- National Taiwan University
- Taipei 10617
- Taiwan
- Institute of Atomic and Molecular Sciences
| | - Chen-Wei Tsai
- Department of Physics
- National Taiwan University
- Taipei 10617
- Taiwan
- Institute of Atomic and Molecular Sciences
| | - Dan Bing
- Pujiang Institute
- Nanjing Tech University
- Nanjing
- China
| | - Asuka Fujii
- Department of Chemistry
- Graduate School of Science
- Tohoku University
- Sendai 980-8578
- Japan
| | - Jer-Lai Kuo
- Institute of Atomic and Molecular Sciences
- Academia Sinica
- Taipei
- Taiwan
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30
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Ohashi K, Sasaki J, Yamamoto G, Judai K, Nishi N, Sekiya H. Temperature effects on prevalent structures of hydrated Fe+ complexes: Infrared spectroscopy and DFT calculations of Fe+(H2O)n (n = 3–8). J Chem Phys 2014; 141:214307. [DOI: 10.1063/1.4902408] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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31
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Pearson WL, Copeland C, Kocak A, Sallese Z, Metz RB. Near ultraviolet photodissociation spectroscopy of Mn+(H2O) and Mn+(D2O). J Chem Phys 2014; 141:204305. [DOI: 10.1063/1.4901982] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Wright L. Pearson
- Department of Chemistry, University of Massachusetts Amherst, Amherst, Massachusetts 01003, USA
| | - Christopher Copeland
- Department of Chemistry, University of Massachusetts Amherst, Amherst, Massachusetts 01003, USA
| | - Abdulkadir Kocak
- Department of Chemistry, University of Massachusetts Amherst, Amherst, Massachusetts 01003, USA
| | - Zachary Sallese
- Department of Chemistry, University of Massachusetts Amherst, Amherst, Massachusetts 01003, USA
| | - Ricardo B. Metz
- Department of Chemistry, University of Massachusetts Amherst, Amherst, Massachusetts 01003, USA
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32
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Cooper RJ, Heiles S, DiTucci MJ, Williams ER. Hydration of Guanidinium: Second Shell Formation at Small Cluster Size. J Phys Chem A 2014; 118:5657-66. [DOI: 10.1021/jp506429a] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Richard J. Cooper
- Department
of Chemistry, University of California, Berkeley, California 94720-1460, United States
| | - Sven Heiles
- Department
of Chemistry, University of California, Berkeley, California 94720-1460, United States
| | - Matthew J. DiTucci
- Department
of Chemistry, University of California, Berkeley, California 94720-1460, United States
| | - Evan R. Williams
- Department
of Chemistry, University of California, Berkeley, California 94720-1460, United States
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Qin Z, Cong R, Xie H, Liu Z, Wu X, Tang Z, Jiang L, Fan H. Photoelectron imaging and theoretical study on nascent hydrogen bond network in microsolvated clusters of Au- (CH3OH)n (n = 1-5). J Phys Chem A 2014; 118:3402-9. [PMID: 24773175 DOI: 10.1021/jp411411j] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We first demonstrate the photoelectron spectroscopic evidence of the transition of two competitive solvation patterns in the Au(-)(CH3OH)n (n = 1-5) clusters. Quantum chemical calculations have been carried out to characterize the geometric structures, energy properties and hydrogen-bonded patterns, and to aid the spectral assignment. It has been found that the nonconventional hydrogen bonds dominate the small clusters (n = 1 and 2), whereas the conventional hydrogen bonds play more and more important role from n = 2 to n = 5. This finding provides concrete hydrogen bond network evolution of Au(-) surrounded by methanol molecules.
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Affiliation(s)
- Zhengbo Qin
- State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, Chinese Academy of Sciences , Dalian 116023, China
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Marsh BM, Zhou J, Garand E. Vibrational Spectroscopy of Small Hydrated CuOH+ Clusters. J Phys Chem A 2014; 118:2063-71. [DOI: 10.1021/jp411614t] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Brett M. Marsh
- Department of Chemistry, University of Wisconsin, 1101 University Avenue, Madison, Wisconsin 53706, United States
| | - Jia Zhou
- Department of Chemistry, University of Wisconsin, 1101 University Avenue, Madison, Wisconsin 53706, United States
| | - Etienne Garand
- Department of Chemistry, University of Wisconsin, 1101 University Avenue, Madison, Wisconsin 53706, United States
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35
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Bandyopadhyay B, Reishus KN, Duncan MA. Infrared spectroscopy of solvation in small Zn+ (H2O)n complexes. J Phys Chem A 2013; 117:7794-803. [PMID: 23875934 DOI: 10.1021/jp4046676] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Singly charged zinc-water cations are produced in a pulsed supersonic expansion source using laser vaporization. Zn(+)(H2O)n (n = 1-4) complexes are mass selected and studied with infrared laser photodissociation spectroscopy, employing the method of argon tagging. Density functional theory (DFT) computations are used to obtain the structures and vibrational frequencies of these complexes and their isomers. Spectra in the O-H stretching region show sharp bands corresponding to the symmetric and asymmetric stretches, whose frequencies are lower than those in the isolated water molecule. Zn(+)(H2O)nAr complexes with n = 1-3 have O-H stretches only in the higher frequency region, indicating direct coordination to the metal. The Zn(+)(H2O)2-4Ar complexes have multiple bands here, indicating the presence of multiple low energy isomers differing in the attachment position of argon. The Zn(+)(H2O)4Ar cluster uniquely exhibits a broad band in the hydrogen bonded stretch region, indicating the presence of a second sphere water molecule. The coordination of the Zn(+)(H2O)n complexes is therefore completed with three water molecules.
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Li Y, Wang G, Wang C, Zhou M. Coordination and Solvation of the Au+ Cation: Infrared Photodissociation Spectroscopy of Mass-Selected Au(H2O)n+ (n = 1–8) Complexes. J Phys Chem A 2012; 116:10793-801. [DOI: 10.1021/jp3094963] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Yuzhen Li
- Department of Chemistry, Shanghai
Key Laboratory of
Molecular Catalysts and Innovative Materials, Fudan University, Shanghai 200433, China
| | - Guanjun Wang
- Department of Chemistry, Shanghai
Key Laboratory of
Molecular Catalysts and Innovative Materials, Fudan University, Shanghai 200433, China
| | - Caixia Wang
- Department of Chemistry, Shanghai
Key Laboratory of
Molecular Catalysts and Innovative Materials, Fudan University, Shanghai 200433, China
| | - Mingfei Zhou
- Department of Chemistry, Shanghai
Key Laboratory of
Molecular Catalysts and Innovative Materials, Fudan University, Shanghai 200433, China
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van der Linde C, Beyer MK. Reactions of M(+)(H2O)n, n < 40, M = V, Cr, Mn, Fe, Co, Ni, Cu, and Zn, with D2O reveal water activation in Mn(+)(H2O)n. J Phys Chem A 2012; 116:10676-82. [PMID: 23075152 DOI: 10.1021/jp308744p] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Reactions of M(+)(H(2)O)(n), n < 40, M = V, Cr, Mn, Fe, Co, Ni, Cu, and Zn, with D(2)O are studied by Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry. Isotopically highly enriched metals are used as applicable. Isotopic scrambling with formation of HDO is not observed for M = Cr, Fe, Co, Ni, Cu, and Zn, which indicates that these hydrated metal ions consist of a singly charged metal center and a hydration shell of intact, inactivated water molecules. In the vanadium case, HDO formation is observed in the size region where also hydroxide formation with evolution of molecular hydrogen occurs. For manganese, HDO formation occurs in the size regime n ≈ 8-20. Additional experiments show that, in this size regime, Mn(+)(H(2)O)(n) is slowly converted into HMnOH(+)(H(2)O)(n-1) under the influence of room temperature blackbody radiation. The reaction is mildly exothermic; ΔH ≈ -21 ± 10 kJ mol(-1).
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Affiliation(s)
- Christian van der Linde
- Institut für Physikalische Chemie, Christian-Albrechts-Universität zu Kiel, Olshausenstraße 40, 24098 Kiel, Germany
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O’Brien JT, Williams ER. Effects of Ions on Hydrogen-Bonding Water Networks in Large Aqueous Nanodrops. J Am Chem Soc 2012; 134:10228-36. [DOI: 10.1021/ja303191r] [Citation(s) in RCA: 86] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Jeremy T. O’Brien
- Department of Chemistry, University of California, Berkeley, California 94720-1460,
United States
| | - Evan R. Williams
- Department of Chemistry, University of California, Berkeley, California 94720-1460,
United States
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Coordination and solvation of V+ with ammonia molecules: Infrared photodissociation spectroscopy of V+(NH3)n (n=4–8). Chem Phys Lett 2012. [DOI: 10.1016/j.cplett.2012.04.053] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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41
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van der Linde C, Hemmann S, Höckendorf RF, Balaj OP, Beyer MK. Reactivity of hydrated monovalent first row transition metal ions M(+)(H2O)n, M = V, Cr, Mn, Fe, Co, Ni, Cu, Zn, toward molecular oxygen, nitrous oxide, and carbon dioxide. J Phys Chem A 2012; 117:1011-20. [PMID: 22506540 DOI: 10.1021/jp3020723] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The reactions of hydrated monovalent transition metal ions M(+)(H(2)O)(n), M = V, Cr, Mn, Fe, Co, Ni, Cu, Zn, toward molecular oxygen, nitrous oxide, and carbon dioxide were studied by Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry. Clusters containing monovalent chromium, cobalt, nickel, or zinc were reactive toward O(2), while only hydrated cobalt was reactive toward N(2)O. A strongly size dependent reactivity was observed. Chromium and cobalt react very slowly with carbon dioxide. Nanocalorimetric analysis, (18)O(2) exchange, and collision induced dissociation (CID) experiments were done to learn more about the structure of the O(2) products. The thermochemistry for cobalt, nickel, and zinc is comparable to the formation of O(2)(-) from hydrated electrons. These results suggest that cobalt, nickel, and zinc are forming M(2+)/O(2)(-) ion pairs in the cluster, while chromium rather forms a covalently bound dioxygen complex in large clusters, followed by an exothermic dioxide formation in clusters with n ≤ 5. The results show that hydrated singly charged transition metal ions exhibit highly specific reactivities toward O(2), N(2)O, and CO(2).
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Affiliation(s)
- Christian van der Linde
- Institut für Physikalische Chemie, Christian-Albrechts-Universität zu Kiel, Olshausenstraße 40, 24098 Kiel, Germany
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Carnegie PD, Bandyopadhyay B, Duncan MA. Infrared spectroscopy of Mn+ (H2O) and Mn2+ (H2O) via argon complex predissociation. J Phys Chem A 2011; 115:7602-9. [PMID: 21619058 DOI: 10.1021/jp203501n] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
Singly and doubly charged manganese-water cations, and their mixed complexes with attached argon atoms, are produced by laser vaporization in a pulsed nozzle source. Complexes of the form Mn(+)(H(2)O)Ar(n) (n = 1-4) and Mn(2+)(H(2)O)Ar(4) are studied via mass-selected infrared photodissociation spectroscopy, detected in the mass channels corresponding to the elimination of argon. Sharp resonances are detected for all complexes in the region of the symmetric and asymmetric stretch vibrations of water. With the guidance of density functional theory computations, specific vibrational band resonances are assigned to complexes having different argon attachment configurations. In the small singly charged complexes, argon adds first to the metal ion site and later in larger clusters to the hydrogens of water. The doubly charged complex has argon only on the metal ion. Vibrations in all of these complexes are shifted to lower frequencies than those of the free water molecule. These shifts are greater when argon is attached to hydrogen and also greater for the dication compared to the singly charged species. Cation binding also causes the IR intensities for water vibrations to be much greater than those of the free water molecule, and the relative intensities are greater for the symmetric stretch than the asymmetric stretch. This latter effect is also enhanced for the dication complex.
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Affiliation(s)
- P D Carnegie
- Department of Chemistry, University of Georgia, Athens, Georgia 30602-2556, United States
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Furukawa K, Ohashi K, Koga N, Imamura T, Judai K, Nishi N, Sekiya H. Coordinatively unsaturated cobalt ion in Co+(H2O)n (n=4–6) probed with infrared photodissociation spectroscopy. Chem Phys Lett 2011. [DOI: 10.1016/j.cplett.2011.04.058] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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45
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Prell JS, O’Brien JT, Williams ER. Structural and Electric Field Effects of Ions in Aqueous Nanodrops. J Am Chem Soc 2011; 133:4810-8. [DOI: 10.1021/ja108341t] [Citation(s) in RCA: 63] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- James S. Prell
- Department of Chemistry, University of California, Berkeley, California 94720-1460, United States
| | - Jeremy T. O’Brien
- Department of Chemistry, University of California, Berkeley, California 94720-1460, United States
| | - Evan R. Williams
- Department of Chemistry, University of California, Berkeley, California 94720-1460, United States
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Song X, Zhao Y, Zhang G, Zhang P. Ab InitioStudy on Structures and Vibrational Spectra of M+(H2O)Ar2(M = Cu, Au). Mol Phys 2011. [DOI: 10.1080/00268976.2010.521782] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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47
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Song X, Zhao Y, Zhang G, Zhang P. Theoretical study on structures, binding energies and vibrational spectra of M+(H2O)2Ar (M=Cu, Ag, Au). COMPUT THEOR CHEM 2011. [DOI: 10.1016/j.comptc.2010.10.041] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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48
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Carnegie PD, Bandyopadhyay B, Duncan MA. Infrared spectroscopy of Sc+(H2O) and Sc2+(H2O) via argon complex predissociation: The charge dependence of cation hydration. J Chem Phys 2011; 134:014302. [DOI: 10.1063/1.3515425] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Furukawa K, Ohashi K, Imamura T, Sasaki J, Judai K, Nishi N, Sekiya H. Methanol solvation of the Ag+ ion probed with infrared photodissociation spectroscopy of Ag+(CH3OH) (n= 1–5). Chem Phys Lett 2010. [DOI: 10.1016/j.cplett.2010.06.043] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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50
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Sinha RK, Nicol E, Steinmetz V, Maître P. Gas phase structure of micro-hydrated [Mn(ClO4)]+ and [Mn2(ClO4)3]+ ions probed by infrared spectroscopy. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2010; 21:758-772. [PMID: 20299239 DOI: 10.1016/j.jasms.2010.02.014] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2010] [Revised: 02/08/2010] [Accepted: 02/08/2010] [Indexed: 05/29/2023]
Abstract
Gas-phase infrared photodissociation spectroscopy is reported for the microsolvated [Mn(ClO(4))(H(2)O)(n)](+) and [Mn(2)(ClO(4))(3)(H(2)O)(n)](+) complexes from n = 2 to 5. Electrosprayed ions are isolated in an ion-trap where they are photodissociated. The 2600-3800 cm(-1) spectral region associated with the OH stretching mode is scanned with a relatively low-power infrared table-top laser, which is used in combination with a CO(2) laser to enhance the photofragmentation yield of these strongly bound ions. Hydrogen bonding is evidenced by a relatively broad band red-shifted from the free OH region. Band assignment based on quantum chemical calculations suggest that there is formation of water-perchlorate hydrogen bond within the first coordination shell of high-spin Mn(II). Although the observed spectral features are also compatible with the formation of structures with double-acceptor water in the second shell, these structures are found relatively high in energy compared with structures with all water directly bound to manganese. Using the highly intense IR beam of the free electron laser CLIO in the 800-1700 cm(-1), we were also able to characterize the coordination mode (eta(2)) of perchlorate for two clusters. The comparison of experimental and calculated spectra suggests that the perchlorate Cl-O stretches are unexpectedly underestimated at the B3LYP level, while they are correctly described at the MP2 level allowing for spectral assignment.
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Affiliation(s)
- Rajeev K Sinha
- Laboratoire de Chimie Physique, UMR8000 CNRS, Université Paris Sud 11, Orsay, France
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