1
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Niu F, Hu X, Ritzoulis C, Tu W, Zhao X, Xia Y, Lu Y, Yin J, Pan W. Does arginine aggregate formation in aqueous solutions follow a two-step mechanism? Phys Chem Chem Phys 2024; 26:21240-21248. [PMID: 39073462 DOI: 10.1039/d4cp02119c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/30/2024]
Abstract
The formation of aggregates was studied in arginine aqueous solutions using light scattering. The main driving force for aggregate formation is hydrogen bonding between the arginine (Arg) amino acids, which is partially verified using density functional theory calculations. The measurement of energy loss during this process, coupled with Cryo-EM morphology data, indicates that these aggregates are in the solid state. The aggregation occurs in two steps, with a liquid intermediate stage. The investigation of the effect of pH and solute concentration on aggregate formation for other amino acid aqueous solutions verifies that aggregate formation is amino-acid specific, while small-sized clusters formed by weak interactions lead to large-sized aggregation. The water structure around amino acid molecules sheds light on the prediction of their aggregate formation. Homochirality is observed in the aggregates; its existence sheds light on the origin of protein homochirality.
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Affiliation(s)
- Fuge Niu
- School of Food Science and Biotechnology, Zhejiang Gongshang University, Hangzhou, 310018, China.
| | - Xinyu Hu
- School of Food Science and Biotechnology, Zhejiang Gongshang University, Hangzhou, 310018, China.
| | - Christos Ritzoulis
- School of Food Science and Biotechnology, Zhejiang Gongshang University, Hangzhou, 310018, China.
- Department of Food Science and Technology, International Hellenic University, Thessaloniki 57400, Greece
| | - Weiwei Tu
- School of Food Science and Biotechnology, Zhejiang Gongshang University, Hangzhou, 310018, China.
| | - Xurui Zhao
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
| | - Yuanzhi Xia
- College of Chemistry and Materials Engineering, Wenzhou University, Chashan University town, Wenzhou, 325035, China
| | - Yinghua Lu
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
| | - Junfeng Yin
- Tea Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou 310008, China.
| | - Weichun Pan
- School of Food Science and Biotechnology, Zhejiang Gongshang University, Hangzhou, 310018, China.
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2
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Dorchies F, Serva A, Sidos A, Michot L, Deschamps M, Salanne M, Grimaud A. Correlating Substrate Reactivity at Electrified Interfaces with the Electrolyte Structure in Synthetically Relevant Organic Solvent/Water Mixtures. J Am Chem Soc 2024; 146:17495-17507. [PMID: 38863085 DOI: 10.1021/jacs.4c05538] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2024]
Abstract
Optimizing electrosynthetic reactions requires fine tuning of a vast chemical space, including charge transfer at electrocatalyst/electrode surfaces, engineering of mass transport limitations, and complex interactions of reactants and products with their environment. Hybrid electrolytes, in which supporting salt ions and substrates are dissolved in a binary mixture of organic solvent and water, represent a new piece of this complex puzzle as they offer a unique opportunity to harness water as the oxygen or proton source in electrosynthesis. In this work, we demonstrate that modulating water-organic solvent interactions drastically impacts the solvation properties of hybrid electrolytes. Combining various spectroscopies with synchrotron small-angle X-ray scattering (SAXS) and force field-based molecular dynamics (MD) simulations, we show that the size and composition of aqueous domains forming in hybrid electrolytes can be controlled. We demonstrate that water is more reactive for the hydrogen evolution reaction (HER) in aqueous domains than when strongly interacting with solvent molecules, which originates from a change in reaction kinetics rather than a thermodynamic effect. We exemplify novel opportunities arising from this new knowledge for optimizing electrosynthetic reactions in hybrid electrolytes. For reactions proceeding first via the activation of water, fine tuning of aqueous domains impacts the kinetics and potentially the selectivity of the reaction. Instead, for organic substrates reacting prior to water, aqueous domains have no impact on the reaction kinetics, while selectivity may be affected. We believe that such a fine comprehension of solvation properties of hybrid electrolytes can be transposed to numerous electrosynthetic reactions.
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Affiliation(s)
- Florian Dorchies
- Chimie du Solide et de l'Energie, UMR 8260, Collège de France, 75231 Paris Cedex 05, France
- Réseau sur le Stockage Electrochimique de l'Energie (RS2E), CNRS FR3459, 80039 Amiens Cedex, France
| | - Alessandra Serva
- Réseau sur le Stockage Electrochimique de l'Energie (RS2E), CNRS FR3459, 80039 Amiens Cedex, France
- Sorbonne Université, CNRS, Physicochimie des Électrolytes et Nanosystèmes Interfaciaux, PHENIX, F-75005 Paris, France
| | - Astrid Sidos
- Department of Chemistry, Merkert Chemistry Center, Boston College, Chestnut Hill, Massachusetts 02467, United States
- Chemistry Department, École Normale Supérieure, PSL University, 75005 Paris, France
| | - Laurent Michot
- Sorbonne Université, CNRS, Physicochimie des Électrolytes et Nanosystèmes Interfaciaux, PHENIX, F-75005 Paris, France
| | - Michaël Deschamps
- Réseau sur le Stockage Electrochimique de l'Energie (RS2E), CNRS FR3459, 80039 Amiens Cedex, France
- CNRS, CEMHTI, UPR 3079, Université d'Orléans, F-45071 Orléans, France
| | - Mathieu Salanne
- Réseau sur le Stockage Electrochimique de l'Energie (RS2E), CNRS FR3459, 80039 Amiens Cedex, France
- Sorbonne Université, CNRS, Physicochimie des Électrolytes et Nanosystèmes Interfaciaux, PHENIX, F-75005 Paris, France
- Institut Universitaire de France (IUF), 75231 Paris, France
| | - Alexis Grimaud
- Chimie du Solide et de l'Energie, UMR 8260, Collège de France, 75231 Paris Cedex 05, France
- Réseau sur le Stockage Electrochimique de l'Energie (RS2E), CNRS FR3459, 80039 Amiens Cedex, France
- Department of Chemistry, Merkert Chemistry Center, Boston College, Chestnut Hill, Massachusetts 02467, United States
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3
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Ye Y, Zheng L, Hong L, García Sakai V, de Souza NR, Teng D, Wu B, Xu Y, Cai J, Liu Z. Direct Observation of the Mutual Coupling Effect in the Protein-Water-Glycerol Mixture by Combining Neutron Scattering and Selective Deuteration. J Phys Chem B 2024; 128:405-414. [PMID: 38183282 DOI: 10.1021/acs.jpcb.3c05135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2024]
Abstract
Numerous studies have discussed the impact of cosolvents on the structure, dynamics, and stability of proteins in aqueous solutions. However, the dynamics of cosolvents in the protein-water-cosolvent ternary system is largely unexplored in experiments due to technical difficulty. Consequently, a comprehensive understanding of the interplay among proteins, water, and cosolvents is still lacking. Here, we employed selective deuteration and neutron scattering techniques to characterize the individual motions of each component in the protein/water/glycerol (GLY) mixture across various temperatures. The consistent dynamic onset temperatures and the correlation between the MSD of the protein and the viscosity of solvents revealed the mutual coupling effects among the three components. Furthermore, our experimental and simulation results showed that the hydrogen bond relaxation energy barrier in the ternary system is ∼43 kJ/mol, whereas in the protein-water binary system it is merely ∼35 kJ/mol. Therefore, we suggest that GLY can enhance hydrogen bond interactions in the ternary system through the mutual coupling effect, thereby serving as one of the protective mechanisms of protein preservation by GLY.
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Affiliation(s)
- Yongfeng Ye
- School of Physics and Astronomy, Shanghai Jiao Tong University, Shanghai 200240, China
- Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Lirong Zheng
- School of Physics and Astronomy, Shanghai Jiao Tong University, Shanghai 200240, China
- Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Liang Hong
- School of Physics and Astronomy, Shanghai Jiao Tong University, Shanghai 200240, China
- Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, China
- Shanghai National Centre for Applied Mathematics (SJTU Center), MOE-LSC, Shanghai Jiao Tong University, Shanghai 200240, China
- Zhangjiang Institute for Advanced Study, Shanghai Jiao Tong University, Shanghai 201203, China
- Shanghai Artificial Intelligence Laboratory, Shanghai 200232, China
| | - Victoria García Sakai
- ISIS Pulsed Neutron and Muon Source, Rutherford Appleton Laboratory, Science & Technology Facilities Council, Didcot OX11 0QX, U.K
| | - Nicolas R de Souza
- Australian Nuclear Science and Technology (ANSTO), Locked Bag 2001, Kirrawee DC, New South Wales 2232, Australia
| | - Dahong Teng
- Organ Transplantation Center, Fujian Medical University Union Hospital, Fuzhou 350000, China
| | - Bin Wu
- Organ Transplantation Center, Fujian Medical University Union Hospital, Fuzhou 350000, China
| | - Yichao Xu
- Organ Transplantation Center, Fujian Medical University Union Hospital, Fuzhou 350000, China
| | - Jinzhen Cai
- Organ Transplantation Center, Fujian Medical University Union Hospital, Fuzhou 350000, China
| | - Zhuo Liu
- Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, China
- Shanghai National Centre for Applied Mathematics (SJTU Center), MOE-LSC, Shanghai Jiao Tong University, Shanghai 200240, China
- Zhangjiang Institute for Advanced Study, Shanghai Jiao Tong University, Shanghai 201203, China
- Shanghai Artificial Intelligence Laboratory, Shanghai 200232, China
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4
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Sharma A, Kumar V, Chakraborty S. Micro-Solvation of Propofol in Propylene Glycol-Water Binary Mixtures: Molecular Dynamics Simulation Studies. J Phys Chem B 2023; 127:11011-11022. [PMID: 37972382 DOI: 10.1021/acs.jpcb.3c04932] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2023]
Abstract
The water microstructure around propofol plays a crucial role in controlling their solubility in the binary mixture. The unusual nature of such a water microstructure can influence both translational and reorientational dynamics, as well as the water hydrogen bond network near propofol. We have carried out all-atom molecular dynamics simulations of five different compositions of the propylene glycol (PG)/water binary mixture containing propofol (PFL) molecules to investigate the differential behavior of water microsolvation shells around propofol, which is likely to control the propofol solubility. It is evident from the simulation snapshots for various compositions that the PG at high molecular ratio favors the water cluster and extended chainlike network that percolates within the PG matrix, where the propofol is in the dispersed state. We estimated that the radial distribution function indicates higher ordered water microstructure around propofol for high PG content, as compared to the lower PG content in the PG/water mixture. So, the hydrophilic PG regulates the stability of the water micronetwork around propofol and its solubility in the binary mixture. We observed that the translational and rotational mobility of water belonging to the propofol microsolvation shell is hindered for high PG content and relaxed toward the low PG molecular ratio in the PG/water mixture. It has been noticed that the structural relaxation of the hydrogen bond formed between the propofol and the water molecules present in the propofol microsolvation shell for all five compositions is found to be slower for high PG content and becomes faster on the way to low PG content in the mixture. Simultaneously, we calculated the intermittent residence time correlation function of the water molecules belonging to the microsolvation shell around the propofol for five different compositions and found a faster short time decay followed up with long time components. Again, the origin of such long time decay is primarily from the structural relaxation of the microsolvation shell around the propofol, where the high PG content shows the slower structural relaxation that turns faster as the PG content approaches to the other end of the compositions. So, our studies showed that the slower structural relaxation of the microsolvation shell around propofol for a high PG molecular ratio in the PG/water mixture correlate well with the extensive ordering of the water microstructure and restricted water mobility and facilitates the dissolution process of propofol in the binary mixture.
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Affiliation(s)
- Anupama Sharma
- Department of Computational Sciences, School of Basic Sciences, Central University of Punjab, Bathinda 151401, India
| | - Vishal Kumar
- Department of Computational Sciences, School of Basic Sciences, Central University of Punjab, Bathinda 151401, India
| | - Sudip Chakraborty
- Department of Computational Sciences, School of Basic Sciences, Central University of Punjab, Bathinda 151401, India
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5
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Österberg M, Henn KA, Farooq M, Valle-Delgado JJ. Biobased Nanomaterials─The Role of Interfacial Interactions for Advanced Materials. Chem Rev 2023; 123:2200-2241. [PMID: 36720130 PMCID: PMC9999428 DOI: 10.1021/acs.chemrev.2c00492] [Citation(s) in RCA: 21] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
This review presents recent advances regarding biomass-based nanomaterials, focusing on their surface interactions. Plant biomass-based nanoparticles, like nanocellulose and lignin from industry side streams, hold great potential for the development of lightweight, functional, biodegradable, or recyclable material solutions for a sustainable circular bioeconomy. However, to obtain optimal properties of the nanoparticles and materials made thereof, it is crucial to control the interactions both during particle production and in applications. Herein we focus on the current understanding of these interactions. Solvent interactions during particle formation and production, as well as interactions with water, polymers, cells and other components in applications, are addressed. We concentrate on cellulose and lignin nanomaterials and their combination. We demonstrate how the surface chemistry of the nanomaterials affects these interactions and how excellent performance is only achieved when the interactions are controlled. We furthermore introduce suitable methods for probing interactions with nanomaterials, describe their advantages and challenges, and introduce some less commonly used methods and discuss their possible applications to gain a deeper understanding of the interfacial chemistry of biobased nanomaterials. Finally, some gaps in current understanding and interesting emerging research lines are identified.
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Affiliation(s)
- Monika Österberg
- Department of Bioproducts and Biosystems, School of Chemical Engineering, Aalto University, Vuorimiehentie 1, 02150Espoo, Finland
| | - K Alexander Henn
- Department of Bioproducts and Biosystems, School of Chemical Engineering, Aalto University, Vuorimiehentie 1, 02150Espoo, Finland
| | - Muhammad Farooq
- Department of Bioproducts and Biosystems, School of Chemical Engineering, Aalto University, Vuorimiehentie 1, 02150Espoo, Finland
| | - Juan José Valle-Delgado
- Department of Bioproducts and Biosystems, School of Chemical Engineering, Aalto University, Vuorimiehentie 1, 02150Espoo, Finland
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6
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Di Mino C, Clancy AJ, Sella A, Howard CA, Headen TF, Seel AG, Skipper NT. Weak Interactions in Dimethyl Sulfoxide (DMSO)-Tertiary Amide Solutions: The Versatility of DMSO as a Solvent. J Phys Chem B 2023; 127:1357-1366. [PMID: 36752593 PMCID: PMC9940205 DOI: 10.1021/acs.jpcb.2c07155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/09/2023]
Abstract
The structures of equimolar mixtures of the commonly used polar aprotic solvents dimethylformamide (DMF) and dimethylacetamide (DMAc) in dimethyl sulfoxide (DMSO) have been investigated via neutron diffraction augmented by extensive hydrogen/deuterium isotopic substitution. Detailed 3-dimensional structural models of these solutions have been derived from the neutron data via Empirical Potential Structure Refinement (EPSR). The intermolecular center-of-mass (CoM) distributions show that the first coordination shell of the amides comprises ∼13-14 neighbors, of which approximately half are DMSO. In spite of this near ideal coordination shell mixing, the changes to the amide-amide structure are found to be relatively subtle when compared to the pure liquids. Analysis of specific intermolecular atom-atom correlations allows quantitative interpretation of the competition between weak interactions in the solution. We find a hierarchy of formic and methyl C-H···O hydrogen bonds forms the dominant local motifs, with peak positions in the range of 2.5-3.0 Å. We also observe a rich variety of steric and dispersion interactions, including those involving the O═C-N amide π-backbones. This detailed insight into the structural landscape of these important liquids demonstrates the versatility of DMSO as a solvent and the remarkable sensitivity of neutron diffraction, which is critical for understanding weak intermolecular interactions at the nanoscale and thereby tailoring solvent properties to specific applications.
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Affiliation(s)
- Camilla Di Mino
- Department
of Physics and Astronomy, University College
London, Gower Street, LondonWC1E
6BT, U.K.
| | - Adam J. Clancy
- Department
of Chemistry, University College London, 20 Gordon Street, LondonWC1H 0AJ, U.K.
| | - Andrea Sella
- Department
of Chemistry, University College London, 20 Gordon Street, LondonWC1H 0AJ, U.K.
| | - Christopher A. Howard
- Department
of Physics and Astronomy, University College
London, Gower Street, LondonWC1E
6BT, U.K.
| | - Thomas F. Headen
- ISIS
Neutron and Muon Source, Science and Technology
Facilities Council, Rutherford Appleton Laboratory, Harwell Campus, DidcotOX11 0QX, U.K.
| | - Andrew G. Seel
- ISIS
Neutron and Muon Source, Science and Technology
Facilities Council, Rutherford Appleton Laboratory, Harwell Campus, DidcotOX11 0QX, U.K.,E-mail: . Phone: +44 (0)1793 547500
| | - Neal T. Skipper
- Department
of Physics and Astronomy, University College
London, Gower Street, LondonWC1E
6BT, U.K.,E-mail: . Phone: +44 (0)207 679 3526
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7
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Robertson H, Nelson ARJ, Prescott SW, Webber GB, Wanless EJ. Cosolvent effects on the structure and thermoresponse of a polymer brush: PNIPAM in DMSO–water mixtures. Polym Chem 2023. [DOI: 10.1039/d2py01487d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/12/2023]
Abstract
Structural characterisation of thermoresponsive polymer brushes in binary DMSO–water mixtures reveals both LCST and UCST behaviour.
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Affiliation(s)
- Hayden Robertson
- College of Science, Engineering and Environment, University of Newcastle, Callaghan, Australia
| | | | | | - Grant B. Webber
- College of Science, Engineering and Environment, University of Newcastle, Callaghan, Australia
| | - Erica J. Wanless
- College of Science, Engineering and Environment, University of Newcastle, Callaghan, Australia
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8
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The role of water and acid catalysis in the reaction of acetone with hydrogen peroxide: A DFT study. COMPUT THEOR CHEM 2022. [DOI: 10.1016/j.comptc.2022.113908] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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9
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Liu B, Yan X, Zhao Z, Wang J, Feng J. Distinctly different solvation behaviors of poly( N, N-diethylacrylamide) gels in water/acetone and water/DMSO mixtures. Phys Chem Chem Phys 2022; 24:23893-23902. [PMID: 36165400 DOI: 10.1039/d2cp02144g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The solvation behaviors and intermolecular interactions of a poly(N,N-diethylacrylamide) (PDEA) gel network in water/DMSO and water/acetone mixtures have been investigated by variable-temperature high-resolution 1H MAS NMR. Unlike decreasing volume phase transition temperature (VPTT) of the typical thermosensitive poly(N-isopropylacrylamide) (PNIPAM) gel induced by both acetone and DMSO in a water-rich region, distinct phase transition behaviors are revealed for the PDEA gel. That is, acetone is found to increase the VPTT of PDEA directly in the water-rich region while DMSO is also found to increase the VPTT of PDEA at a very low concentration but then decrease the VPTT as the concentration further increases. The above distinctly different VPTT shifts of PDEA are attributed to the different polymer-cosolvent interactions in water/acetone and water/DMSO systems. DMSO molecules with a strong water affinity are preferentially excluded by the PDEA gel network, and can promote the volume phase transition by favoring the collapse of the PDEA gel network, while acetone molecules preferentially adsorbed on the polymer interact with PDEA via non-specific van der Waals interaction, which favors the swollen state of the PDEA gel.
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Affiliation(s)
- Biaolan Liu
- State Key Laboratory of Magnetic Resonance and Atomic Molecular Physics, Wuhan Center for Magnetic Resonance, Key Laboratory of Magnetic Resonance in Biological Systems, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China.
| | - Xiaoshuang Yan
- University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Zhihui Zhao
- State Key Laboratory of Magnetic Resonance and Atomic Molecular Physics, Wuhan Center for Magnetic Resonance, Key Laboratory of Magnetic Resonance in Biological Systems, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China. .,University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Jian Wang
- University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Jiwen Feng
- State Key Laboratory of Magnetic Resonance and Atomic Molecular Physics, Wuhan Center for Magnetic Resonance, Key Laboratory of Magnetic Resonance in Biological Systems, Innovation Academy for Precision Measurement Science and Technology, Chinese Academy of Sciences, Wuhan 430071, China.
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10
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Dou Z, Xing L, Fang W, Sun C, Men Z. Investigated hydrogen-bond network kinetics of acetone-water solutions by spontaneous and stimulated Raman spectroscopy. OPTICS EXPRESS 2022; 30:17270-17277. [PMID: 36221553 DOI: 10.1364/oe.457580] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/06/2022] [Accepted: 04/25/2022] [Indexed: 06/16/2023]
Abstract
The hydrogen bond (HB) network structure and kinetics of the acetone-water mixed solutions were investigated by the spontaneous Raman and stimulated Raman scattering (SRS) spectra. The HB network of water molecules was enhanced when the volume fraction of acetone ranged from 0 to 0.25. Two new SRS peaks of water at 3272 and 3380 cm-1 were obtained, resulting from the cooperation of the polar carbonyl (C = O)-enhanced HB and the ice-like structure formed around the methyl groups. However, when the volume fraction went beyond 0.25, the spontaneous Raman main peak at 3445 cm-1 showed a significant blue-shift, and the corresponding SRS signal disappeared, indicating that the HB of water was weakened, which originated from the self-association of acetone. In the meantime, the fully tetrahedral HB structure among water molecules was destroyed at the higher volume fraction (≥ 0.8). Hopefully, our study here would advance the study of HB network structures and kinetics in other aqueous solutions.
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11
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Kim K, Lee SE. Combined toxicity of dimethyl sulfoxide (DMSO) and vanadium towards zebrafish embryos (Danio rerio): Unexpected synergistic effect by DMSO. CHEMOSPHERE 2021; 270:129405. [PMID: 33412354 DOI: 10.1016/j.chemosphere.2020.129405] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2020] [Revised: 12/17/2020] [Accepted: 12/19/2020] [Indexed: 06/12/2023]
Abstract
Dimethyl sulfoxide (DMSO) is produced in nature and is known to be a source of carbon and sulfur for marine microorganisms. It is currently used in many biological experiments, pharmaceutical preparations, and energy-producing systems such as lithium batteries. Therefore, the toxicity of DMSO has been studied because of its various implications to living organisms; however, such studies are largely limited to measuring individual toxicity whereas the combined toxicity of DMSO with other compounds has rarely been investigated. In the present study, the combined acute toxicity of 0.1% and 0.5% DMSO with vanadium was investigated in zebrafish embryos; the LC50 values of these combinations were 62.0 and 6.38 ppm, respectively. In individual toxicity tests, neither DMSO nor vanadium caused such mortality levels. Therefore, both 0.1% and 0.5% DMSO had a synergistic effect with vanadium, and this result was confirmed using an independent action model. This combined toxicity delayed the development of zebrafish embryos and caused pericardial edema. The synergistic effect of DMSO and vanadium was found to be related to reduced pH and inhibition of cytochrome c oxidase activity. Given its potential synergistic toxicity to aquatic organisms, the introduction of DMSO into the environment should be investigated and routinely monitored.
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Affiliation(s)
- Kyeongnam Kim
- Department of Applied Biosciences, Kyungpook National University, Daegu, 41566, Republic of Korea
| | - Sung-Eun Lee
- Department of Applied Biosciences, Kyungpook National University, Daegu, 41566, Republic of Korea; Department of Integrative Biology, Kyungpook National University, Daegu, 41566, Republic of Korea.
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12
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Zenkevich IG, Nikitina DA, Deruish A. Formation and Chromatographic Detection of Organic Compound Hydrates. JOURNAL OF ANALYTICAL CHEMISTRY 2021. [DOI: 10.1134/s1061934821040146] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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13
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Abstract
Aqueous cosolvent systems (ACoSs) are mixtures of small polar molecules such as amides, alcohols, dimethyl sulfoxide, or ions in water. These liquids have been the focus of fundamental studies due to their complex intermolecular interactions as well as their broad applications in chemistry, medicine, and materials science. ACoSs are fully miscible at the macroscopic level but exhibit nanometer-scale spatial heterogeneity. ACoSs have recently received renewed attention within the chemical physics community as model systems to explore the relationship between intermolecular interactions and microscopic liquid-liquid phase separation. In this perspective, we provide an overview of ACoS spatial segregation, dynamic heterogeneity, and multiscale relaxation dynamics. We describe emerging approaches to characterize liquid microstructure, H-bond networks, and dynamics using modern experimental tools combined with molecular dynamics simulations and network-based analysis techniques.
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Affiliation(s)
- Kwang-Im Oh
- Department of Chemistry, University of Texas at Austin, Austin, Texas 19104, USA
| | - Carlos R Baiz
- Department of Chemistry, University of Texas at Austin, Austin, Texas 19104, USA
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14
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Fortes AD, Ponsonby J, Kirichek O, García-Sakai V. On the crystal structures and phase transitions of hydrates in the binary dimethyl sulfoxide–water system. ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE CRYSTAL ENGINEERING AND MATERIALS 2020; 76:733-748. [DOI: 10.1107/s2052520620008999] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2020] [Accepted: 07/01/2020] [Indexed: 11/10/2022]
Abstract
Neutron powder diffraction data have been collected from a series of flash-frozen aqueous solutions of dimethyl sulfoxide (DMSO) with concentrations between 25 and 66.7 mol% DMSO. These reveal the existence of three stoichiometric hydrates, which crystallize on warming between 175 and 195 K. DMSO trihydrate crystallizes in the monoclinic space group P21/c, with unit-cell parameters at 195 K of a = 10.26619 (3), b = 7.01113 (2), c = 10.06897 (3) Å, β = 101.5030 (2)° and V = 710.183 (3) Å3 (Z = 4). Two of the symmetry-inequivalent water molecules form a sheet of tiled four- and eight-sided rings; the DMSO molecules are sandwiched between these sheets and linked along the b axis by the third water molecule to generate water–DMSO–water tapes. Two different polymorphs of DMSO dihydrate have been identified. The α phase is monoclinic (space group P21/c), with unit-cell parameters at 175 K of a = 6.30304 (4), b = 9.05700 (5), c = 11.22013 (7) Å, β = 105.9691 (4)° and V = 615.802 (4) Å3 (Z = 4). Its structure contains water–DMSO–water chains, but these are polymerized in such a manner as to form sheets of reniform eight-sided rings, with the methyl groups extending on either side of the sheet. On warming above 198 K, α-DMSO·2H2O undergoes a solid-state transformation to a mixture of DMSO·3H2O + anhydrous DMSO, and there is then a stable eutectic between these two phases at ∼203 K. The β-phase of DMSO dihydrate has been observed in a rapidly frozen eutectic melt and in very DMSO-rich mixtures. It is observed to be unstable with respect to the α-phase; above ∼180 K, β-DMSO·2H2O converts irreversibly to α-DMSO·2H2O. At 175 K, the lattice parameters of β-DMSO·2H2O are a = 6.17448 (10), b = 11.61635 (16), c = 8.66530 (12) Å, β = 101.663 (1)° and V = 608.684 (10) Å3 (Z = 4), hence this polymorph is just 1.16% denser than the α-phase under identical conditions. Like the other two hydrates, the space group appears likely, on the basis of systematic absences, to be P21/c, but the structure has not yet been determined. Our results reconcile 60 years of contradictory interpretations of the phase relations in the binary DMSO–water system, particularly between mole fractions of 0.25–0.50, and confirm empirical and theoretical studies of the liquid structure around the eutectic composition (33.33 mol% DMSO).
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15
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Zhang X, Wang Z, Chen Z, Li H, Zhang L, Ye J, Zhang Q, Zhuang W. Molecular Mechanism of Water Reorientation Dynamics in Dimethyl Sulfoxide Aqueous Mixtures. J Phys Chem B 2020; 124:1806-1816. [PMID: 32022564 DOI: 10.1021/acs.jpcb.0c00717] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Nonmonotonic composition dependence is often observed for numerous properties in the aqueous mixtures of small amphiphilic molecules. The molecular picture underlying this structure-activity relationship, however, remains largely elusive. We herein studied water reorientation dynamics in the aqueous mixture of dimethyl sulfoxide (DMSO), which has a significant nonmonotonic composition dependence, using molecular dynamic simulation and an extended molecular jump model. The analysis indicates that this nonideal behavior is driven by the collective frame diffusion component of water reorientation, which decelerates in the water-rich regime because of the strengthened hydrogen bonds and accelerates in the water-poor regime as the hydrogen bonding network is broken into smaller aggregates. The current work therefore connects the microheterogeneity in the solvation structure of DMSO-water with its nonmonotonic hydration dynamics and sheds new light on how microsegregation leads to the multiscale hydration nonideality in general.
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Affiliation(s)
- Xia Zhang
- College of Chemistry and Materials Science, Inner Mongolia University for Nationlities, Tongliao Inner Mongolia 028043, China
| | - Zhangtao Wang
- College of Chemistry and Chemical Engineering, Bohai University, Jinzhou, Liaoning 121013, China
| | - Zhening Chen
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, Fujian 35000, China
| | - Hui Li
- College of Chemistry and Chemical Engineering, Bohai University, Jinzhou, Liaoning 121013, China
| | - Lu Zhang
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, Fujian 35000, China
| | - Jinting Ye
- College of Chemistry and Materials Science, Inner Mongolia University for Nationlities, Tongliao Inner Mongolia 028043, China
| | - Qiang Zhang
- College of Chemistry and Materials Science, Inner Mongolia University for Nationlities, Tongliao Inner Mongolia 028043, China
| | - Wei Zhuang
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, Fujian 35000, China
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16
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Chéron N, Naepels M, Pluhařová E, Laage D. Protein Preferential Solvation in Water:Glycerol Mixtures. J Phys Chem B 2020; 124:1424-1437. [PMID: 31999925 DOI: 10.1021/acs.jpcb.9b11190] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
For proteins in solvent mixtures, the relative abundances of each solvent in their solvation shell have a critical impact on their properties. Preferential solvation of a series of proteins in water-glycerol mixtures is studied here over a broad range of solvent compositions via classical molecular dynamics simulations. Our simulation results reveal that the differences between shell and bulk compositions exhibit dramatic changes with solvent composition, temperature, and protein nature. In contrast with the simple and widely used picture where glycerol is completely excluded from the protein interface, we show that for aqueous solutions with less than 50% glycerol in volume, protein solvation shells have approximately the same composition as the bulk solvent and proteins are in direct contact with glycerol. We further demonstrate that at high glycerol concentration, glycerol depletion from the solvation shell is due to an entropic factor arising from the reduced accessibility of bulky glycerol molecules in protein cavities. The resulting molecular picture is important to understand protein activity and cryopreservation in mixed aqueous solvents.
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Affiliation(s)
- Nicolas Chéron
- PASTEUR, Département de chimie , École Normale Supérieure, PSL University, Sorbonne Université, CNRS , 75005 Paris , France
| | - Margaux Naepels
- PASTEUR, Département de chimie , École Normale Supérieure, PSL University, Sorbonne Université, CNRS , 75005 Paris , France
| | - Eva Pluhařová
- PASTEUR, Département de chimie , École Normale Supérieure, PSL University, Sorbonne Université, CNRS , 75005 Paris , France
| | - Damien Laage
- PASTEUR, Département de chimie , École Normale Supérieure, PSL University, Sorbonne Université, CNRS , 75005 Paris , France
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17
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Al-Madhagi LH, Callear SK, Schroeder SLM. Hydrophilic and hydrophobic interactions in concentrated aqueous imidazole solutions: a neutron diffraction and total X-ray scattering study. Phys Chem Chem Phys 2020; 22:5105-5113. [DOI: 10.1039/c9cp05993h] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A study of 5 M aqueous imidazole solutions combining neutron and X-ray diffraction with EPSR simulations shows dominance of hydrogen-bonding between imidazole and water and negligible hydrogen-bonding between imidazole molecules.
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Affiliation(s)
- Laila H. Al-Madhagi
- School of Chemical and Process Engineering
- University of Leeds
- Leeds LS2 9JT
- UK
- Diamond Light Source Ltd
| | | | - Sven L. M. Schroeder
- School of Chemical and Process Engineering
- University of Leeds
- Leeds LS2 9JT
- UK
- Diamond Light Source Ltd
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18
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Youngs T. Dissolve: next generation software for the interrogation of total scattering data by empirical potential generation. Mol Phys 2019. [DOI: 10.1080/00268976.2019.1651918] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Tristan Youngs
- ISIS Pulsed Neutron and Muon Source, STFC Rutherford Appleton Laboratory, Didcot, UK
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19
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Agieienko V, Neklyudov V, Dimiev A. Solvent-induced changes in the graphene oxide absorption spectrum. The case of dimethylsulfoxide/water mixtures. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.110942] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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20
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Cyran JD, Backus EHG, van Zadel MJ, Bonn M. Comparative Adsorption of Acetone on Water and Ice Surfaces. Angew Chem Int Ed Engl 2019; 58:3620-3624. [PMID: 30601600 PMCID: PMC6767755 DOI: 10.1002/anie.201813517] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2018] [Indexed: 12/05/2022]
Abstract
Small organic molecules on ice and water surfaces are ubiquitous in nature and play a crucial role in many environmentally relevant processes. Herein, we combine surface‐specific vibrational spectroscopy and a controllable flow cell apparatus to investigate the molecular adsorption of acetone onto the basal plane of single‐crystalline hexagonal ice with a large surface area. By comparing the adsorption of acetone on the ice/air and the water/air interface, we observed two different types of acetone adsorption, as apparent from the different responses of both the free O−H and the hydrogen‐bonded network vibrations for ice and liquid water. Adsorption on ice occurs preferentially through interactions with the free OH group, while the interaction of acetone with the surface of liquid water appears less specific.
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Affiliation(s)
- Jenée D Cyran
- Molecular Spectroscopy Department, Max Planck Institute for Polymer Research, Ackermannweg 10, 55128, Mainz, Germany
| | - Ellen H G Backus
- Molecular Spectroscopy Department, Max Planck Institute for Polymer Research, Ackermannweg 10, 55128, Mainz, Germany.,Department of Physical Chemistry, University of Vienna, Währinger Strasse 42, 1090, Vienna, Austria
| | - Marc-Jan van Zadel
- Molecular Spectroscopy Department, Max Planck Institute for Polymer Research, Ackermannweg 10, 55128, Mainz, Germany
| | - Mischa Bonn
- Molecular Spectroscopy Department, Max Planck Institute for Polymer Research, Ackermannweg 10, 55128, Mainz, Germany
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21
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Vergleichende Acetonadsorption an Wasser- und Eisoberflächen. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201813517] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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22
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Jones CD, Walker M, Xiao Y, Edkins K. Pre-nucleation aggregation based on solvent microheterogeneity. Chem Commun (Camb) 2019; 55:4865-4868. [DOI: 10.1039/c9cc01455a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
The microheterogeneous region of aqueous acetonitrile leads to preferred localisation and aggregation of caffeine and theophylline on the interface.
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Affiliation(s)
| | - Martin Walker
- Department of Chemistry
- Durham University
- Durham DH1 3LE
- UK
| | - Yitian Xiao
- School of Pharmacy
- Queen's University Belfast
- Belfast BT9 7BL
- UK
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23
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Pérez-Ramírez HA, Haro-Pérez C, Vázquez-Contreras E, Klapp J, Bautista-Carbajal G, Odriozola G. P-NIPAM in water–acetone mixtures: experiments and simulations. Phys Chem Chem Phys 2019; 21:5106-5116. [DOI: 10.1039/c8cp07549b] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
The lower critical solution temperature (LCST) of poly-N-isopropylacrylamide (p-NIPAM) diminishes when a small volume of acetone is added to the aqueous polymer solution, and then increases for further additions, producing a minimum at a certain acetone concentration.
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Affiliation(s)
- H. A. Pérez-Ramírez
- Área de Física de Procesos Irreversibles
- División de Ciencias Básicas e Ingeniería
- Universidad Autónoma Metropolitana-Azcapotzalco
- Av. San Pablo 180
- 02200 Ciudad de México
| | - C. Haro-Pérez
- Área de Física de Procesos Irreversibles
- División de Ciencias Básicas e Ingeniería
- Universidad Autónoma Metropolitana-Azcapotzalco
- Av. San Pablo 180
- 02200 Ciudad de México
| | - E. Vázquez-Contreras
- Departamento de Ciencias Naturales
- CNI
- Universidad Autónoma Metropolitana – Cuajimalpa
- Av. Vasco de Quiroga 4871
- 05348 Ciudad de México
| | - J. Klapp
- Instituto Nacional de Investigaciones Nucleares
- ININ
- Km. 36.5, Carretera México – Toluca
- 52750 Ocoyoacac
- Mexico
| | - G. Bautista-Carbajal
- Academia de Matemáticas
- Universidad Autónoma de la Ciudad de México
- 07160 Ciudad de México
- Mexico
| | - G. Odriozola
- Área de Física de Procesos Irreversibles
- División de Ciencias Básicas e Ingeniería
- Universidad Autónoma Metropolitana-Azcapotzalco
- Av. San Pablo 180
- 02200 Ciudad de México
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24
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Ghosh N, Roy S, Ahmed M, Mondal JA. Water in the hydration shell of cryoprotectants and their non-cryoprotecting structural analogues as observed by Raman-MCR spectroscopy. J Mol Liq 2018. [DOI: 10.1016/j.molliq.2018.06.073] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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25
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Perera A, Lovrinčević B. A comparative study of aqueous DMSO mixtures by computer simulations and integral equation theories. Mol Phys 2018. [DOI: 10.1080/00268976.2018.1483040] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
Affiliation(s)
- Aurélien Perera
- Laboratoire de Physique Théorique de la Matiére Condensée (UMR CNRS 7600), Université Pierre et Marie Curie, Paris, France
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26
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Rhys NH, Al-Badri MA, Ziolek RM, Gillams RJ, Collins LE, Lawrence MJ, Lorenz CD, McLain SE. On the solvation of the phosphocholine headgroup in an aqueous propylene glycol solution. J Chem Phys 2018; 148:135102. [DOI: 10.1063/1.5024850] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023] Open
Affiliation(s)
- Natasha H. Rhys
- Department of Biochemistry, University of Oxford, Oxford OX1 3QU, United Kingdom
| | | | - Robert M. Ziolek
- Department of Physics, King’s College London, London WC2R 2LS, United Kingdom
| | - Richard J. Gillams
- Department of Biochemistry, University of Oxford, Oxford OX1 3QU, United Kingdom
- Earth-Life Sciences Institute, Tokyo Institute of Technology, Meguro-ku, Tokyo 152-8550, Japan
| | - Louise E. Collins
- Department of Pharmaceutical Sciences, King’s College London, London SE1 9NH, United Kingdom
| | - M. Jayne Lawrence
- Division of Pharmacy and Optometry, University of Manchester, Manchester ML13 9PL, United Kingdom
| | - Christian D. Lorenz
- Department of Physics, King’s College London, London WC2R 2LS, United Kingdom
| | - Sylvia E. McLain
- Department of Biochemistry, University of Oxford, Oxford OX1 3QU, United Kingdom
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27
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Grimaldi N, Rojas PE, Stehle S, Cordoba A, Schweins R, Sala S, Luelsdorf S, Piña D, Veciana J, Faraudo J, Triolo A, Braeuer AS, Ventosa N. Pressure-Responsive, Surfactant-Free CO 2-Based Nanostructured Fluids. ACS NANO 2017; 11:10774-10784. [PMID: 28846386 PMCID: PMC5707624 DOI: 10.1021/acsnano.7b02500] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/11/2017] [Accepted: 08/28/2017] [Indexed: 06/07/2023]
Abstract
Microemulsions are extensively used in advanced material and chemical processing. However, considerable amounts of surfactant are needed for their formulation, which is a drawback due to both economic and ecological reasons. Here, we describe the nanostructuration of recently discovered surfactant-free, carbon dioxide (CO2)-based microemulsion-like systems in a water/organic-solvent/CO2 pressurized ternary mixture. "Water-rich" nanodomains embedded into a "water-depleted" matrix have been observed and characterized by the combination of Raman spectroscopy, molecular dynamics simulations, and small-angle neutron scattering. These single-phase fluids show a reversible, pressure-responsive nanostructuration; the "water-rich" nanodomains at a given pressure can be instantaneously degraded/expanded by increasing/decreasing the pressure, resulting in a reversible, rapid, and homogeneous mixing/demixing of their content. This pressure-triggered responsiveness, together with other inherent features of these fluids, such as the absence of any contaminant in the ternary mixture (e.g., surfactant), their spontaneous formation, and their solvation capability (enabling the dissolution of both hydrophobic and hydrophilic molecules), make them appealing complex fluid systems to be used in molecular material processing and in chemical engineering.
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Affiliation(s)
- Natascia Grimaldi
- Institut
de Ciencia de Materials de Barcelona (ICMAB-CSIC) and Nanomol Technologies
SA, Modul de Recerca B, Campus UAB, 08193 Bellaterra, Spain
| | - Paula Elena Rojas
- Institut
de Ciencia de Materials de Barcelona (ICMAB-CSIC) and Nanomol Technologies
SA, Modul de Recerca B, Campus UAB, 08193 Bellaterra, Spain
- Centro
de Investigacion Biomedica en Red de Bioingenieria, Biomateriales y Nanomedicina (CIBER-BBN), 28029 Madrid, Spain
| | - Simon Stehle
- Lehrstuhl
für Technische Thermodynamik (LTT), Friedrich-Alexander-Universitaet Erlangen-Nuernberg (FAU), Am Weichselgarten 8, 91058 Erlangen, Germany
- Erlangen
Graduate School in Advanced Optical Technologies (SAOT), Friedrich Alexander-Universitaet Erlangen-Nuernberg
(FAU), Paul-Gordan-Straße
6, 91052 Erlangen, Germany
| | - Alba Cordoba
- Institut
de Ciencia de Materials de Barcelona (ICMAB-CSIC) and Nanomol Technologies
SA, Modul de Recerca B, Campus UAB, 08193 Bellaterra, Spain
- Centro
de Investigacion Biomedica en Red de Bioingenieria, Biomateriales y Nanomedicina (CIBER-BBN), 28029 Madrid, Spain
| | - Ralf Schweins
- Large
Scale Structures Group, Institut Laue-Langevin, 71 Avenue des Martyrs, CS 20156, F-38042 Grenoble Cedex 9, France
| | - Santi Sala
- Institut
de Ciencia de Materials de Barcelona (ICMAB-CSIC) and Nanomol Technologies
SA, Modul de Recerca B, Campus UAB, 08193 Bellaterra, Spain
- Centro
de Investigacion Biomedica en Red de Bioingenieria, Biomateriales y Nanomedicina (CIBER-BBN), 28029 Madrid, Spain
| | - Stefan Luelsdorf
- Institut
für Physikalische Chemie, Universität
Stuttgart, Pfaffenwaldring 55, D-70569 Stuttgart, Germany
| | - David Piña
- Institut
de Ciencia de Materials de Barcelona (ICMAB-CSIC) and Nanomol Technologies
SA, Modul de Recerca B, Campus UAB, 08193 Bellaterra, Spain
- Centro
de Investigacion Biomedica en Red de Bioingenieria, Biomateriales y Nanomedicina (CIBER-BBN), 28029 Madrid, Spain
| | - Jaume Veciana
- Institut
de Ciencia de Materials de Barcelona (ICMAB-CSIC) and Nanomol Technologies
SA, Modul de Recerca B, Campus UAB, 08193 Bellaterra, Spain
- Centro
de Investigacion Biomedica en Red de Bioingenieria, Biomateriales y Nanomedicina (CIBER-BBN), 28029 Madrid, Spain
| | - Jordi Faraudo
- Institut
de Ciencia de Materials de Barcelona (ICMAB-CSIC) and Nanomol Technologies
SA, Modul de Recerca B, Campus UAB, 08193 Bellaterra, Spain
| | - Alessandro Triolo
- Laboratorio
Liquidi Ionici, Istituto di Struttura della
Materia-CNR (ISM-CNR), Rome 00133, Italy
| | - Andreas Siegfried Braeuer
- Lehrstuhl
für Technische Thermodynamik (LTT), Friedrich-Alexander-Universitaet Erlangen-Nuernberg (FAU), Am Weichselgarten 8, 91058 Erlangen, Germany
- Erlangen
Graduate School in Advanced Optical Technologies (SAOT), Friedrich Alexander-Universitaet Erlangen-Nuernberg
(FAU), Paul-Gordan-Straße
6, 91052 Erlangen, Germany
| | - Nora Ventosa
- Institut
de Ciencia de Materials de Barcelona (ICMAB-CSIC) and Nanomol Technologies
SA, Modul de Recerca B, Campus UAB, 08193 Bellaterra, Spain
- Centro
de Investigacion Biomedica en Red de Bioingenieria, Biomateriales y Nanomedicina (CIBER-BBN), 28029 Madrid, Spain
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28
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Russina O, Triolo A. Ionic Liquids and Neutron Scattering. NEUTRON SCATTERING - APPLICATIONS IN BIOLOGY, CHEMISTRY, AND MATERIALS SCIENCE 2017. [DOI: 10.1016/b978-0-12-805324-9.00004-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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29
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Wang J, Wang N, Liu B, Bai J, Gong P, Ru G, Feng J. Preferential adsorption of the additive is not a prerequisite for cononsolvency in water-rich mixtures. Phys Chem Chem Phys 2017; 19:30097-30106. [DOI: 10.1039/c7cp04384h] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
NMR studies reveal the distinct molecular interactions accounting for cononsolvency.
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Affiliation(s)
- Jian Wang
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics
- Wuhan Institute of Physics and Mathematics
- Chinese Academy of Science
- Wuhan 430071
- P. R. China
| | - Nian Wang
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics
- Wuhan Institute of Physics and Mathematics
- Chinese Academy of Science
- Wuhan 430071
- P. R. China
| | - Biaolan Liu
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics
- Wuhan Institute of Physics and Mathematics
- Chinese Academy of Science
- Wuhan 430071
- P. R. China
| | - Jia Bai
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics
- Wuhan Institute of Physics and Mathematics
- Chinese Academy of Science
- Wuhan 430071
- P. R. China
| | - Pei Gong
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics
- Wuhan Institute of Physics and Mathematics
- Chinese Academy of Science
- Wuhan 430071
- P. R. China
| | - Geying Ru
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics
- Wuhan Institute of Physics and Mathematics
- Chinese Academy of Science
- Wuhan 430071
- P. R. China
| | - Jiwen Feng
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics
- Wuhan Institute of Physics and Mathematics
- Chinese Academy of Science
- Wuhan 430071
- P. R. China
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30
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Maugeri L, Busch S, McLain SE, Pardo LC, Bruni F, Ricci MA. Structure-activity relationships in carbohydrates revealed by their hydration. Biochim Biophys Acta Gen Subj 2016; 1861:1486-1493. [PMID: 28011302 DOI: 10.1016/j.bbagen.2016.12.017] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2016] [Revised: 12/13/2016] [Accepted: 12/17/2016] [Indexed: 11/25/2022]
Abstract
One of the more intriguing aspects of carbohydrate chemistry is that despite having very similar molecular structures, sugars have very different properties. For instance, there is a sensible difference in sweet taste between glucose and trehalose, even though trehalose is a disaccharide that comprised two glucose units, suggesting a different ability of these two carbohydrates to bind to sweet receptors. Here we have looked at the hydration of specific sites and at the three-dimensional configuration of water molecules around three carbohydrates (glucose, cellobiose, and trehalose), combining neutron diffraction data with computer modelling. Results indicate that identical chemical groups can have radically different hydration patterns depending on their location on a given molecule. These differences can be linked with the specific activity of glucose, cellobiose, and trehalose as a sweet substance, as building block of cellulose fiber, and as a bioprotective agent, respectively. This article is part of a Special Issue entitled "Recent Advances in Bionanomaterials" Guest Editors: Dr. Marie-Louise Saboungi and Dr. Samuel D. Bader.
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Affiliation(s)
- Laura Maugeri
- Dipartimento di Scienze, Università degli Studi Roma Tre, Via della Vasca Navale 84, Roma 00146, Italy
| | - Sebastian Busch
- German Engineering Materials Science Centre (GEMS) at Heinz Maier-Leibnitz Zentrum (MLZ), Helmholtz-Zentrum Geesthacht GmbH, Lichtenbergstr. Garching bei München 1 85747, Germany
| | - Sylvia E McLain
- Department of Biochemistry, University of Oxford, South Park Road, Oxford, Oxfordshire OX1 3QU, UK
| | - Luis Carlos Pardo
- Departament de Física i Enginyeria Nuclear, Universitat Politècnica de Catalunya Barcelona 08028, Catalonia, Spain
| | - Fabio Bruni
- Dipartimento di Scienze, Università degli Studi Roma Tre, Via della Vasca Navale 84, Roma 00146, Italy
| | - Maria Antonietta Ricci
- Dipartimento di Scienze, Università degli Studi Roma Tre, Via della Vasca Navale 84, Roma 00146, Italy.
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31
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Rhys NH, Gillams RJ, Collins LE, Callear SK, Lawrence MJ, McLain SE. On the structure of an aqueous propylene glycol solution. J Chem Phys 2016; 145:224504. [DOI: 10.1063/1.4971208] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Affiliation(s)
- Natasha H. Rhys
- Department of Biochemistry, University of Oxford, Oxford OX1 3QU, United Kingdom
| | - Richard J. Gillams
- Department of Biochemistry, University of Oxford, Oxford OX1 3QU, United Kingdom
| | - Louise E. Collins
- King’s College London, Institute of Pharmaceutical Science, London SE1 9NH, United Kingdom
| | - Samantha K. Callear
- STFC, ISIS Facility, Rutherford Appleton Laboratory, Didcot OX11 0QU United Kingdom
| | - M. Jayne Lawrence
- King’s College London, Institute of Pharmaceutical Science, London SE1 9NH, United Kingdom
| | - Sylvia E. McLain
- Department of Biochemistry, University of Oxford, Oxford OX1 3QU, United Kingdom
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32
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Fábián B, Idrissi A, Marekha B, Jedlovszky P. Local lateral environment of the molecules at the surface of DMSO-water mixtures. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2016; 28:404002. [PMID: 27506283 DOI: 10.1088/0953-8984/28/40/404002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Molecular dynamics simulations of the liquid-vapour interface of dimethyl sulphoxide (DMSO)-water mixtures of 11 different compositions, including two neat systems are performed on the canonical (N, V, T) ensemble at 298 K. The molecules constituting the surface layer of these systems are selected by means of the identification of the truly interfacial molecules (ITIM) method, and their local lateral environment at the liquid surface is investigated by performing Voronoi analysis. The obtained results reveal that both molecules prefer to be in a mixed local environment, consisting of both kinds of molecules, at the liquid surface, and this preference is even stronger here than in the bulk liquid phase. Neat-like patches, in which a molecule is surrounded by like neighbours, are not found. However, vacancies that are surrounded solely by water molecules are observed at the liquid surface. Our results show that strongly hydrogen bonded DMSO·H2O complexes, known to exist in the bulk phase of these mixtures, are absent from the liquid surface.
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Affiliation(s)
- Balázs Fábián
- Department of Inorganic and Analytical Chemistry, Budapest University of Technology and Economics, Szt. Gellért tér 4, H-1111 Budapest, Hungary. Institut UTINAM (CNRS UMR 6213), Université Bourgogne Franche-Comté, 16 route de Gray, F-25030 Besançon, France
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33
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Lindsay RJ, Johnson QR, Evangelista W, Nellas RB, Shen T. DMSO enhanced conformational switch of an interfacial enzyme. Biopolymers 2016; 105:864-72. [PMID: 27463323 DOI: 10.1002/bip.22924] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2016] [Accepted: 07/25/2016] [Indexed: 11/05/2022]
Abstract
Interfacial proteins function in unique heterogeneous solvent environments, such as water-oil interfaces. One important example is microbial lipase, which is activated in an oil-water emulsion phase and has many important enzymatic functions. A unique aprotic dipolar organic solvent, dimethyl sulfoxide (DMSO), has been shown to increase the activity of lipases, but the mechanism behind this enhancement is still unknown. Here, all-atom molecular dynamics simulations of lipase in a binary solution were performed to examine the effects of DMSO on the dynamics of the gating mechanism. The amphiphilic α5 region of the lipase was a focal point for the analysis, since the structural ordering of α5 has been shown to be important for gating under other perturbations. Compared to the closed-gorge ensemble in an aqueous environment, the conformational ensemble shifts towards open-gorge structures in the presence of DMSO solvents. Increased width of the access channel is particularly prevalent in 45% and 60% DMSO concentrations (w/w). As the amount of DMSO increases, the α5 region of the lipase becomes more α-helical, as we previously observed in studies that address water-oil interfacial and high pressure activation. We believe that the structural ordering of α5 plays an essential role on gating and lipase activity.
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Affiliation(s)
- Richard J Lindsay
- UT-ORNL Graduate School of Genome Science and Technology, Knoxville, TN, 37996.,Oak Ridge National Laboratory, Center for Molecular Biophysics, Oak Ridge, TN, 37830
| | - Quentin R Johnson
- Oak Ridge National Laboratory, Center for Molecular Biophysics, Oak Ridge, TN, 37830.,National Institute for Mathematical and Biological Synthesis, Knoxville, TN, 37996
| | - Wilfredo Evangelista
- Oak Ridge National Laboratory, Center for Molecular Biophysics, Oak Ridge, TN, 37830.,Department of Biochemistry and Cellular & Molecular Biology, University of Tennessee, Knoxville, TN, 37996
| | - Ricky B Nellas
- Institute of Chemistry, University of the Philippines Diliman, Quezon City, Philippines
| | - Tongye Shen
- Oak Ridge National Laboratory, Center for Molecular Biophysics, Oak Ridge, TN, 37830. .,Department of Biochemistry and Cellular & Molecular Biology, University of Tennessee, Knoxville, TN, 37996.
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34
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Perera A, Mazighi R. On the nature of the molecular ordering of water in aqueous DMSO mixtures. J Chem Phys 2016; 143:154502. [PMID: 26493910 DOI: 10.1063/1.4933204] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Computer simulation studies of aqueous dimethyl sulfoxyde (DMSO) mixtures show micro-heterogeneous structures, just like aqueous alcohol mixtures. However, there is a marked difference in the aggregate structure of water between the two types of systems. While water molecules form multiconnected globular clusters in alcohols, we report herein that the typical water aggregates in aqueous DMSO mixtures are linear, favouring a 2 hydrogen bond structure per water molecule, and for all DMSO mole fractions ranging from 0.1 to 0.9. This linear-aggregate structure produces a particular signature in the water site-site structure factors, in the form of a pre-peak at k ≈ 0.2-0.8 Å(-1), depending on DMSO concentration. This pre-peak is either absent in other aqueous mixtures, such as aqueous methanol mixtures, or very difficult to see through computer simulations, such as in aqueous-t-butanol mixtures. This difference in the topology of the aggregates explains why the Kirkwood-Buff integrals of aqueous-DMSO mixture look nearly ideal, in contrast with those of aqueous alcohol mixtures, suggesting a connection between the shape of the water aggregates, its fluctuations, and the concentration fluctuations. In order to further study this discrepancy between aqueous DMSO and aqueous alcohol mixture, two models of pseudo-DMSO are introduced, where the size of the sulfur atom is increased by a factor 1.6 and 1.7, respectively, hence increasing the hydrophobicity of the molecule. The study shows that these mixtures become closer to the emulsion type seen in aqueous alcohol mixtures, with more globular clustering of the water molecules, long range domain oscillations in the water-water correlations and increased water-water Kirkwood-Buff integrals. It demonstrates that the local ordering of the water molecules is influenced by the nature of the solute molecules, with very different consequences for structural properties and related thermodynamic quantities. This study illustrates the unique plasticity of water in presence of different types of solutes.
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Affiliation(s)
- Aurélien Perera
- Laboratoire de Physique Théorique de la Matière Condensée (UMR CNRS 7600), Université Pierre et Marie Curie, 4 Place Jussieu, F75252 Paris Cedex 05, France
| | - Redha Mazighi
- Laboratoire de Physique Théorique de la Matière Condensée (UMR CNRS 7600), Université Pierre et Marie Curie, 4 Place Jussieu, F75252 Paris Cedex 05, France
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35
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Rhys NH, Soper AK, Dougan L. Hydrophilic Association in a Dilute Glutamine Solution Persists Independent of Increasing Temperature. J Phys Chem B 2015; 119:15644-51. [DOI: 10.1021/acs.jpcb.5b07413] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Natasha H. Rhys
- School
of Physics and Astronomy, University of Leeds, Leeds LS2 9JT, U.K
| | - Alan K. Soper
- ISIS Facility,
STFC Rutherford Appleton Laboratory, Harwell Oxford, Didcot, Oxon OX11
OQX, U.K
| | - Lorna Dougan
- School
of Physics and Astronomy, University of Leeds, Leeds LS2 9JT, U.K
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36
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Lotze S, Groot CCM, Vennehaug C, Bakker HJ. Femtosecond Mid-Infrared Study of the Dynamics of Water Molecules in Water–Acetone and Water–Dimethyl Sulfoxide Mixtures. J Phys Chem B 2015; 119:5228-39. [DOI: 10.1021/jp512703w] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- S. Lotze
- FOM-Institute for Atomic and Molecular
Physics AMOLF, Science Park 104, 1098 XG Amsterdam, The Netherlands
| | - C. C. M. Groot
- FOM-Institute for Atomic and Molecular
Physics AMOLF, Science Park 104, 1098 XG Amsterdam, The Netherlands
| | - C. Vennehaug
- FOM-Institute for Atomic and Molecular
Physics AMOLF, Science Park 104, 1098 XG Amsterdam, The Netherlands
| | - H. J. Bakker
- FOM-Institute for Atomic and Molecular
Physics AMOLF, Science Park 104, 1098 XG Amsterdam, The Netherlands
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37
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Idrissi A, Marekha B, Kiselev M, Jedlovszky P. The local environment of the molecules in water–DMSO mixtures, as seen from computer simulations and Voronoi polyhedra analysis. Phys Chem Chem Phys 2015; 17:3470-81. [DOI: 10.1039/c4cp04839c] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
The local structure of DMSO–water mixtures is studied by computer simulation and Voronoi analysis.
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Affiliation(s)
- Abdenacer Idrissi
- Laboratoire de Spectrochimie Infrarouge et Raman (UMR CNRS A8516)
- Université Lille 1
- Science et Technologies
- 59655 Villeneuve d'Ascq Cedex
- France
| | - B. Marekha
- Laboratoire de Spectrochimie Infrarouge et Raman (UMR CNRS A8516)
- Université Lille 1
- Science et Technologies
- 59655 Villeneuve d'Ascq Cedex
- France
| | - M. Kiselev
- Institute of Solution Chemistry of the Russian Academy of Sciences
- 153045 Ivanovo
- Russia
| | - Pál Jedlovszky
- Laboratory of Interfaces and Nanosize Systems
- Institute of Chemistry
- Eötvös Loránd University
- H-1117 Budapest
- Hungary
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38
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Jedlovszky P, Jójárt B, Horvai G. Properties of the intrinsic surface of liquid acetone, as seen from computer simulations. Mol Phys 2014. [DOI: 10.1080/00268976.2014.968227] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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39
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Frasch DM, Spiegel DR. Experiments on tracer diffusion in aqueous and non-aqueous solvent combinations. J Chem Phys 2014; 141:124507. [PMID: 25273451 DOI: 10.1063/1.4896303] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Forced Rayleigh scattering is used to study the tracer diffusion of an azobenzene in binary combinations of polar solvents, including water. In the absence of water, the tracer diffusion coefficient D in the mixture lies between the diffusion coefficients within the pure solvents, on a curve that is reasonably close to the prediction of free-volume theory. If water is present, on the other hand, the diffusion coefficient displays a minimum that is less than the smaller of the two pure-solvent values. We attempt to understand the different behavior in water by concentrating on the fairly hydrophobic nature of the solute, leading to a first solvent shell that is hydrophobic on the inside and hydrophilic on the outside. We also believe that clusters of amphiphiles explain the observation that, in aqueous combinations, D is nearly constant above a certain amphiphile mole fraction.
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Affiliation(s)
- Duncan M Frasch
- Department of Physics and Astronomy, Trinity University, San Antonio, Texas 78212, USA
| | - Daniel R Spiegel
- Department of Physics and Astronomy, Trinity University, San Antonio, Texas 78212, USA
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40
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Idrissi A, Marekha B, Barj M, Jedlovszky P. Thermodynamics of mixing water with dimethyl sulfoxide, as seen from computer simulations. J Phys Chem B 2014; 118:8724-33. [PMID: 25010123 DOI: 10.1021/jp503352f] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
The Helmholtz free energy, energy, and entropy of mixing of eight different models of dimethyl sulfoxide (DMSO) with four widely used water models are calculated at 298 K over the entire composition range by means of thermodynamic integration along a suitably chosen thermodynamic path, and compared with experimental data. All 32 model combinations considered are able to reproduce the experimental values rather well, within RT (free energy and energy) and R (entropy) at any composition, and quite often the deviation from the experimental data is even smaller, being in the order of the uncertainty of the calculated free energy or energy, and entropy values of 0.1 kJ/mol and 0.1 J/(mol K), respectively. On the other hand, none of the model combinations considered can accurately reproduce all three experimental functions simultaneously. Furthermore, the fact that the entropy of mixing changes sign with increasing DMSO mole fraction is only reproduced by a handful of model pairs. Model combinations that (i) give the best reproduction of the experimental free energy, while still reasonably well reproducing the experimental energy and entropy of mixing, and (ii) that give the best reproduction of the experimental energy and entropy, while still reasonably well reproducing the experimental free energy of mixing, are identified.
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Affiliation(s)
- Abdenacer Idrissi
- Laboratoire de Spectrochimie Infrarouge et Raman (UMR CNRS 8516), University of Lille Nord de France , 59655 Villeneuve d'Ascq Cedex, France
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41
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Banerjee S, Bagchi B. Stability of fluctuating and transient aggregates of amphiphilic solutes in aqueous binary mixtures: Studies of dimethylsulfoxide, ethanol, and tert-butyl alcohol. J Chem Phys 2013; 139:164301. [DOI: 10.1063/1.4824890] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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42
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Jia C, Wang W, Zhang T, Gao L, Fu F, Wang D. Impact of Water Molecules on the Isomerization of CH 3S(OH)CH 2to CH 3S(O)CH 3: A Computational Investigation. CHINESE J CHEM 2013. [DOI: 10.1002/cjoc.201300410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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43
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44
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Moyano F, Setien E, Silber JJ, Correa NM. Enzymatic hydrolysis of N-benzoyl-L-tyrosine p-nitroanilide by α-chymotrypsin in DMSO-water/AOT/n-heptane reverse micelles. A unique interfacial effect on the enzymatic activity. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2013; 29:8245-8254. [PMID: 23734596 DOI: 10.1021/la401103q] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
The reverse micelle (RM) media are very good as nanoreactors because they can create a unique microenvironment for carrying out a variety of chemical and biochemical reactions. The aim of the present work is to determine the influence of different water-dimethyl sulfoxide (DMSO) mixtures encapsulated in 1,4-bis-2-ethylhexylsulfosuccinate (AOT)/n-heptane RMs on the enzymatic hydrolysis of N-benzoyl-L-tyrosine p-nitroanilide (Bz-Try-pNA) by α-chymotrypsin (α-CT). The reaction was first studied in homogeneous media at different DMSO-water mixture compositions and in DMSO-water/AOT/n-heptane RMs. The hydrolysis rates of Bz-Try-pNA catalyzed by α-CT were determined by UV-vis spectroscopy. The reaction follows the Michaelis-Menten mechanism and the kinetic parameters: kcat, KM, and kcat/KM were evaluated under different conditions. In this homogeneous media, DMSO plays an important role in the solubilization process of the peptide which is almost insoluble in water, but it has a tremendous impact on the inactivation of α-CT. It is shown that the enzyme dissolved in a 20% molar ratio of the DMSO-water mixture does not present enzymatic activity. Dynamic light scattering has been used to assess the formation of DMSO-water/AOT/heptane RMs at different DMSO compositions. The results also show that there is preferential solvation of the AOT RM interface by water molecules. To test the use of these RMs as nanoreactors, the kinetic parameters for the enzymatic reaction in these systems have been evaluated. The parameters were determined at fixed W(S) {W(S) = ([water] + [DMSO])/[AOT] = 20} at different DMSO-water compositions. The results show that the Michaelis-Menten mechanism is valid for α-CT in all the RM systems studied and that the reaction takes place at the RM interface. Surprisingly, it was observed that the enzyme encapsulated by the RMs show catalytic effects with similar kcat/KM values at any DMSO composition investigated, which evidence that DMSO molecules are localized far from the RM interface.
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Affiliation(s)
- Fernando Moyano
- Departamento de Química, Universidad Nacional de Río Cuarto, Agencia Postal # 3. C.P. X5804BYA Río Cuarto, Argentina
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45
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Alvarado YJ, Ballestas-Barrientos A, Cubillán N, Morales-Toyo M, Restrepo J, Ferrer-Amado G. Preferential solvation of thiophene and furan-2-carboxaldehyde phenylhydrazone derivatives in DMSO-water and DMSO-n-octanol mixtures. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2013; 103:361-367. [PMID: 23261635 DOI: 10.1016/j.saa.2012.10.057] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/06/2012] [Revised: 10/21/2012] [Accepted: 10/25/2012] [Indexed: 06/01/2023]
Abstract
The preferential solvation of thiophene- and furan-2-carboxaldehyde phenylhydrazone derivatives in DMSO-water and DMSO-n-octanol mixtures has been studied using visible absorption spectroscopy with a previous characterization of the electronic transitions by Time-Dependent Density Functional Theory (TDDFT) and solvatochromic study in several solvents with different hydrogen-bond donor capacity. The results indicate that the phenylhydrazones are preferentially solvated by clusters of DMSO-water existing in the solvent mixture and the dielectric enrichment as preferential solvation mechanism was discarded. A relation between local DMSO concentration with nitro groups and the electronegativity of the heteroatom of the five-membered ring was found. For DMSO-1-octanol mixtures, the results showed no preferential solvation.
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Affiliation(s)
- Ysaías J Alvarado
- Laboratorio de Caracterización Molecular y Biomolecular, Departamento de Investigación en Tecnología de Materiales y del Ambiente, Instituto Venezolano de Investigaciones Científicas, Avenida 74 con calle 14A, Maracaibo, Edo. Zulia, Bolivarian Republic of Venezuela.
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46
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Cordeiro JMM, Soper AK. A hybrid neutron diffraction and computer simulation study on the solvation of N-methylformamide in dimethylsulfoxide. J Chem Phys 2013; 138:044502. [DOI: 10.1063/1.4773346] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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47
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Towey JJ, Soper AK, Dougan L. What happens to the structure of water in cryoprotectant solutions? Faraday Discuss 2013; 167:159-76. [DOI: 10.1039/c3fd00084b] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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48
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Wolfshorndl MP, Baskin R, Dhawan I, Londergan CH. Covalently Bound Azido Groups Are Very Specific Water Sensors, Even in Hydrogen-Bonding Environments. J Phys Chem B 2012; 116:1172-9. [DOI: 10.1021/jp209899m] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Marta P. Wolfshorndl
- Department of Chemistry, Haverford College, 370 Lancaster Avenue, Haverford, Pennsylvania 19041-1392, United States
| | - Rachel Baskin
- Department of Chemistry, Haverford College, 370 Lancaster Avenue, Haverford, Pennsylvania 19041-1392, United States
| | - Ishita Dhawan
- Department of Chemistry, Haverford College, 370 Lancaster Avenue, Haverford, Pennsylvania 19041-1392, United States
| | - Casey H. Londergan
- Department of Chemistry, Haverford College, 370 Lancaster Avenue, Haverford, Pennsylvania 19041-1392, United States
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49
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Dabkowska AP, Foglia F, Lawrence MJ, Lorenz CD, McLain SE. On the solvation structure of dimethylsulfoxide/water around the phosphatidylcholine head group in solution. J Chem Phys 2011; 135:225105. [DOI: 10.1063/1.3658382] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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50
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Towey JJ, Dougan L. Structural Examination of the Impact of Glycerol on Water Structure. J Phys Chem B 2011; 116:1633-41. [DOI: 10.1021/jp2093862] [Citation(s) in RCA: 66] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- J. J. Towey
- School of Physics and Astronomy, University of Leeds, Leeds, LS2 9JT, United Kingdom
| | - L. Dougan
- School of Physics and Astronomy, University of Leeds, Leeds, LS2 9JT, United Kingdom
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