1
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Zhu Y, Peng J, Xu C, Lan Z. Unsupervised Machine Learning in the Analysis of Nonadiabatic Molecular Dynamics Simulation. J Phys Chem Lett 2024; 15:9601-9619. [PMID: 39270134 DOI: 10.1021/acs.jpclett.4c01751] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/15/2024]
Abstract
The all-atomic full-dimensional-level simulations of nonadiabatic molecular dynamics (NAMD) in large realistic systems has received high research interest in recent years. However, such NAMD simulations normally generate an enormous amount of time-dependent high-dimensional data, leading to a significant challenge in result analyses. Based on unsupervised machine learning (ML) methods, considerable efforts were devoted to developing novel and easy-to-use analysis tools for the identification of photoinduced reaction channels and the comprehensive understanding of complicated molecular motions in NAMD simulations. Here, we tried to survey recent advances in this field, particularly to focus on how to use unsupervised ML methods to analyze the trajectory-based NAMD simulation results. Our purpose is to offer a comprehensive discussion on several essential components of this analysis protocol, including the selection of ML methods, the construction of molecular descriptors, the establishment of analytical frameworks, their advantages and limitations, and persistent challenges.
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Affiliation(s)
- Yifei Zhu
- MOE Key Laboratory of Environmental Theoretical Chemistry, SCNU Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety, School of Environment, South China Normal University, Guangzhou 510006, P. R. China
| | - Jiawei Peng
- MOE Key Laboratory of Environmental Theoretical Chemistry, SCNU Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety, School of Environment, South China Normal University, Guangzhou 510006, P. R. China
| | - Chao Xu
- MOE Key Laboratory of Environmental Theoretical Chemistry, SCNU Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety, School of Environment, South China Normal University, Guangzhou 510006, P. R. China
| | - Zhenggang Lan
- MOE Key Laboratory of Environmental Theoretical Chemistry, SCNU Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety, School of Environment, South China Normal University, Guangzhou 510006, P. R. China
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2
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S Mattos R, Mukherjee S, Barbatti M. Quantum Dynamics from Classical Trajectories. J Chem Theory Comput 2024. [PMID: 39235064 DOI: 10.1021/acs.jctc.4c00783] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/06/2024]
Abstract
Nonadiabatic molecular dynamics plays an essential role in exploring the time evolution of molecular systems. Various methods have been developed for this study, with varying accuracy and computational cost. One very successful among them is trajectory surface hopping, which propagates nuclei as classical trajectories using forces from a quantum description of the electrons and incorporates nonadiabatic effects through stochastic state changes during each trajectory propagation. A statistical analysis of an ensemble of the independent trajectories recovers the simulated system's behavior. This approach can give good results, but it is known to overlook nuclear quantum effects, leading to inaccurate predictions. Here, we present quantum dynamics from classical trajectories (QDCT), a new protocol to recover the quantum wavepacket from the classical trajectories generated by surface hopping. In this first QDCT implementation, we apply it to recover results at the multiple spawning level from postprocessing surface hopping precomputed trajectories. With a series of examples, we demonstrate QDCT's potential to improve the accuracy of the dynamics, correct decoherence effects, and diagnose problems or increase confidence in surface hopping results. All that comes at virtually no computational cost since no new electronic calculation is required.
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Affiliation(s)
- Rafael S Mattos
- Aix Marseille University, CNRS, ICR, 13397 Marseille, France
| | - Saikat Mukherjee
- Aix Marseille University, CNRS, ICR, 13397 Marseille, France
- Faculty of Chemistry, Nicolaus Copernicus University in Torun, 87100 Torun, Poland
| | - Mario Barbatti
- Aix Marseille University, CNRS, ICR, 13397 Marseille, France
- Institut Universitaire de France, 75231 Paris, France
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3
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Ibele LM, Memhood A, Levine BG, Avagliano D. Ab Initio Multiple Spawning Nonadiabatic Dynamics with Different CASPT2 Flavors: A Fully Open-Source PySpawn/OpenMolcas Interface. J Chem Theory Comput 2024. [PMID: 39228232 DOI: 10.1021/acs.jctc.4c00855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/05/2024]
Abstract
We introduce an interface between PySpawn, a simulation package to run ab initio multiple spawning (AIMS) nonadiabatic dynamics, and OpenMolcas, a software package to perform multiconfigurational perturbations theory (CASPT2) electronic structure calculations. Our interface allows us to exploit all the functionalities of the two codes: the modular and efficient Python implementation of the AIMS algorithm and the extensive analysis tools offered by PySpawn, with the cutting-edge implementation of CASPT2 equations in OpenMolcas, including the recently introduced analytical gradients and different flavors. Both are fully open-source and free of charge, making the following implementation unique in the current plethora of software for nonadiabatic dynamics. This represents an important step toward a wider application of AIMS-based nonadiabatic dynamics combined with high-accuracy excited-state calculations. The importance and the need for such an implementation are demonstrated by application to the ultrafast relaxation of fulvene from S1 to S0, which is drastically affected by the potential energy surface on which the nuclear wavepacket is propagated. Additionally, the decay is influenced by the CASPT2 flavor adopted, posing interesting questions in the choice of one over the other and opening the door to deeper studies on the effect of CASPT2 formulations in nonadiabatic dynamics.
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Affiliation(s)
- Lea M Ibele
- CNRS, Institut de Chimie Physique UMR8000, Université Paris-Saclay, 91405 Orsay, France
| | - Arshad Memhood
- Department of Chemistry, Institute for Advanced Computational Science, Stony Brook, New York 11794, United States
| | - Benjamin G Levine
- Department of Chemistry, Institute for Advanced Computational Science, Stony Brook, New York 11794, United States
| | - Davide Avagliano
- Chimie ParisTech, CNRS, Institute of Chemistry for Life and Health Sciences (iCLeHS UMR 8060), PSL University, 75005 Paris, France
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4
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Li G, Shi Z, Huang L, Wang L. Multiconfigurational Surface Hopping: a Time-Dependent Variational Approach with Momentum-Jump Trajectories. J Chem Theory Comput 2024. [PMID: 39215702 DOI: 10.1021/acs.jctc.4c00842] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/04/2024]
Abstract
The Ehrenfest mean field dynamics and trajectory surface hopping have been widely used in nonadiabatic dynamics simulations. Based on the time-dependent variational principle (TDVP), the multiconfigurational Ehrenfest (MCE) method has also been developed and can be regarded as a multiconfigurational extension of the traditional Ehrenfest dynamics. However, it is not straightforward to apply the TDVP to surface hopping trajectories because there exists momentum jump during surface hops. To solve this problem, we here propose a multiconfigurational surface hopping (MCSH) method, where continuous momenta are obtained by linear interpolation and the interpolated trajectories are used to construct the basis functions for TDVP in a postprocessing manner. As demonstrated in a series of representative spin-boson models, MCSH achieves high accuracy with only several hundred trajectory bases and can uniformly improve the performance of surface hopping. In principle, MCSH can be combined with all kinds of mixed quantum-classical trajectories and thus has the potential to properly describe general nonadiabatic dynamics.
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Affiliation(s)
- Guijie Li
- Zhejiang Key Laboratory of Excited-State Energy Conversion and Energy Storage, Department of Chemistry, Zhejiang University, Hangzhou 310058, China
| | - Zhecun Shi
- Zhejiang Key Laboratory of Excited-State Energy Conversion and Energy Storage, Department of Chemistry, Zhejiang University, Hangzhou 310058, China
| | - Lei Huang
- Zhejiang Key Laboratory of Excited-State Energy Conversion and Energy Storage, Department of Chemistry, Zhejiang University, Hangzhou 310058, China
| | - Linjun Wang
- Zhejiang Key Laboratory of Excited-State Energy Conversion and Energy Storage, Department of Chemistry, Zhejiang University, Hangzhou 310058, China
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5
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Brook R, Symonds C, Shalashilin DV. Full wave function cloning for improving convergence of the multiconfigurational Ehrenfest method: Tests in the zero-temperature spin-boson model regime. J Chem Phys 2024; 161:064102. [PMID: 39120032 DOI: 10.1063/5.0221184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2024] [Accepted: 07/26/2024] [Indexed: 08/10/2024] Open
Abstract
In this paper, we report a new algorithm for creating an adaptive basis set in the Multiconfigurational Ehrenfest (MCE) method, which is termed Full Cloning (FC), and test it together with the existing Multiple Cloning (MC) using the spin-boson model at zero-temperature as a benchmark. The zero-temperature spin-boson regime is a common hurdle in the development of methods that seek to model quantum dynamics. Two versions of MCE exist. We demonstrate that MC is vital for the convergence of MCE version 2 (MCEv2). The first version (MCEv1) converges much better than MCEv2, but FC improves its convergence in a few cases where it is hard to converge it with the help of a reasonably small size of the basis set.
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Affiliation(s)
- Ryan Brook
- School of Chemistry, University of Leeds, Leeds LS2 9JT, United Kingdom
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6
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Hutton L, Moreno Carrascosa A, Prentice AW, Simmermacher M, Runeson JE, Paterson MJ, Kirrander A. Using a multistate mapping approach to surface hopping to predict the ultrafast electron diffraction signal of gas-phase cyclobutanone. J Chem Phys 2024; 160:204307. [PMID: 38814011 DOI: 10.1063/5.0203667] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2024] [Accepted: 05/05/2024] [Indexed: 05/31/2024] Open
Abstract
Using the recently developed multistate mapping approach to surface hopping (multistate MASH) method combined with SA(3)-CASSCF(12,12)/aug-cc-pVDZ electronic structure calculations, the gas-phase isotropic ultrafast electron diffraction (UED) of cyclobutanone is predicted and analyzed. After excitation into the n-3s Rydberg state (S2), cyclobutanone can relax through two S2/S1 conical intersections, one characterized by compression of the CO bond and the other by dissociation of the α-CC bond. Subsequent transfer into the ground state (S0) is then achieved via two additional S1/S0 conical intersections that lead to three reaction pathways: α ring-opening, ethene/ketene production, and CO liberation. The isotropic gas-phase UED signal is predicted from the multistate MASH simulations, allowing for a direct comparison to the experimental data. This work, which is a contribution to the cyclobutanone prediction challenge, facilitates the identification of the main photoproducts in the UED signal and thereby emphasizes the importance of dynamics simulations for the interpretation of ultrafast experiments.
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Affiliation(s)
- Lewis Hutton
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3QZ, United Kingdom
| | - Andrés Moreno Carrascosa
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3QZ, United Kingdom
| | - Andrew W Prentice
- Institute of Chemical Sciences, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh EH14 4AS, United Kingdom
| | - Mats Simmermacher
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3QZ, United Kingdom
| | - Johan E Runeson
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3QZ, United Kingdom
| | - Martin J Paterson
- Institute of Chemical Sciences, School of Engineering and Physical Sciences, Heriot-Watt University, Edinburgh EH14 4AS, United Kingdom
| | - Adam Kirrander
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3QZ, United Kingdom
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7
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Takahashi H, Borrelli R, Gelin MF, Chen L. Finite temperature dynamics in a polarized sub-Ohmic heat bath: A hierarchical equations of motion-tensor train study. J Chem Phys 2024; 160:164106. [PMID: 38656440 DOI: 10.1063/5.0202312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2024] [Accepted: 04/08/2024] [Indexed: 04/26/2024] Open
Abstract
The dynamics of the sub-Ohmic spin-boson model under polarized initial conditions at finite temperatures is investigated by employing both analytical tools and the numerically accurate hierarchical equations of motion-tensor train method. By analyzing the features of nonequilibrium dynamics, we discovered a bifurcation phenomenon, which separates two regimes of the dynamics. It is found that before the bifurcation time, increasing temperature slows down the population dynamics, while the opposite effect occurs after the bifurcation time. The dynamics is highly sensitive to both initial preparation of the bath and thermal effects.
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Affiliation(s)
| | | | - Maxim F Gelin
- School of Science, Hangzhou Dianzi University, Hangzhou 310018, China
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8
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Makhov DV, Hutton L, Kirrander A, Shalashilin DV. Ultrafast electron diffraction of photoexcited gas-phase cyclobutanone predicted by ab initio multiple cloning simulations. J Chem Phys 2024; 160:164310. [PMID: 38661201 DOI: 10.1063/5.0203683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2024] [Accepted: 04/02/2024] [Indexed: 04/26/2024] Open
Abstract
We present the result of our calculations of ultrafast electron diffraction (UED) for cyclobutanone excited into the S2 electronic state, which is based on the non-adiabatic dynamics simulations with the Ab Initio Multiple Cloning (AIMC) method with the electronic structure calculated at the SA(3)-CASSCF(12,12)/aug-cc-pVDZ level of theory. The key features in the UED pattern were identified, which can be used to distinguish between the reaction pathways observed in the AIMC dynamics, although there is a significant overlap between representative signals due to the structural similarity of the products. The calculated UED pattern can be compared with the experiment.
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Affiliation(s)
- Dmitry V Makhov
- School of Chemistry, University of Leeds, Leeds LS2 9JT, United Kingdom
- School of Mathematics, University of Bristol, Fry Building, Woodland Road, Bristol BS8 1UG, United Kingdom
| | - Lewis Hutton
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3QZ, United Kingdom
| | - Adam Kirrander
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3QZ, United Kingdom
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9
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Tao Z, Bian X, Wu Y, Rawlinson J, Littlejohn RG, Subotnik JE. Total angular momentum conservation in Ehrenfest dynamics with a truncated basis of adiabatic states. J Chem Phys 2024; 160:054104. [PMID: 38310474 DOI: 10.1063/5.0177778] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2023] [Accepted: 12/18/2023] [Indexed: 02/05/2024] Open
Abstract
We show that standard Ehrenfest dynamics does not conserve linear and angular momentum when using a basis of truncated adiabatic states. However, we also show that previously proposed effective Ehrenfest equations of motion [M. Amano and K. Takatsuka, "Quantum fluctuation of electronic wave-packet dynamics coupled with classical nuclear motions," J. Chem. Phys. 122, 084113 (2005) and V. Krishna, "Path integral formulation for quantum nonadiabatic dynamics and the mixed quantum classical limit," J. Chem. Phys. 126, 134107 (2007)] involving the non-Abelian Berry force do maintain momentum conservation. As a numerical example, we investigate the Kramers doublet of the methoxy radical using generalized Hartree-Fock with spin-orbit coupling and confirm that angular momentum is conserved with the proper equations of motion. Our work makes clear some of the limitations of the Born-Oppenheimer approximation when using ab initio electronic structure theory to treat systems with unpaired electronic spin degrees of freedom, and we demonstrate that Ehrenfest dynamics can offer much improved, qualitatively correct results.
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Affiliation(s)
- Zhen Tao
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Xuezhi Bian
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Yanze Wu
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Jonathan Rawlinson
- Department of Mathematics, University of Manchester, Manchester M13 9PL, United Kingdom
| | - Robert G Littlejohn
- Department of Physics, University of California, Berkeley, California 94720, USA
| | - Joseph E Subotnik
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
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10
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Moghaddasi Fereidani R, Vaníček JJL. High-order geometric integrators for the local cubic variational Gaussian wavepacket dynamics. J Chem Phys 2024; 160:044113. [PMID: 38284658 DOI: 10.1063/5.0180070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Accepted: 12/22/2023] [Indexed: 01/30/2024] Open
Abstract
Gaussian wavepacket dynamics has proven to be a useful semiclassical approximation for quantum simulations of high-dimensional systems with low anharmonicity. Compared to Heller's original local harmonic method, the variational Gaussian wavepacket dynamics is more accurate, but much more difficult to apply in practice because it requires evaluating the expectation values of the potential energy, gradient, and Hessian. If the variational approach is applied to the local cubic approximation of the potential, these expectation values can be evaluated analytically, but they still require the costly third derivative of the potential. To reduce the cost of the resulting local cubic variational Gaussian wavepacket dynamics, we describe efficient high-order geometric integrators, which are symplectic, time-reversible, and norm-conserving. For small time steps, they also conserve the effective energy. We demonstrate the efficiency and geometric properties of these integrators numerically on a multidimensional, nonseparable coupled Morse potential.
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Affiliation(s)
- Roya Moghaddasi Fereidani
- Laboratory of Theoretical Physical Chemistry, Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Jiří J L Vaníček
- Laboratory of Theoretical Physical Chemistry, Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
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11
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Pieroni C, Sangiogo Gil E, Ibele LM, Persico M, Granucci G, Agostini F. Investigating the Photodynamics of trans-Azobenzene with Coupled Trajectories. J Chem Theory Comput 2024; 20:580-596. [PMID: 38177105 DOI: 10.1021/acs.jctc.3c00978] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2024]
Abstract
In this work, we present the first implementation of coupled-trajectory Tully surface hopping (CT-TSH) suitable for applications to molecular systems. We combine CT-TSH with the semiempirical floating occupation molecular orbital-configuration interaction electronic structure method to investigate the photoisomerization dynamics of trans-azobenzene. Our study shows that CT-TSH can capture correctly decoherence effects in this system, yielding consistent electronic and nuclear dynamics in agreement with (standard) decoherence-corrected TSH. Specifically, CT-TSH is derived from the exact factorization and the electronic coefficients' evolution is directly influenced by the coupling of trajectories, resulting in the improvement of internal consistency if compared to standard TSH.
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Affiliation(s)
- Carlotta Pieroni
- CNRS, Institut de Chimie Physique UMR8000, Université Paris-Saclay, 91405 Orsay, France
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, via G. Moruzzi 13, 56124 Pisa, Italy
| | - Eduarda Sangiogo Gil
- CNRS, Institut de Chimie Physique UMR8000, Université Paris-Saclay, 91405 Orsay, France
| | - Lea M Ibele
- CNRS, Institut de Chimie Physique UMR8000, Université Paris-Saclay, 91405 Orsay, France
| | - Maurizio Persico
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, via G. Moruzzi 13, 56124 Pisa, Italy
| | - Giovanni Granucci
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, via G. Moruzzi 13, 56124 Pisa, Italy
| | - Federica Agostini
- CNRS, Institut de Chimie Physique UMR8000, Université Paris-Saclay, 91405 Orsay, France
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12
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Gera T, Chen L, Eisfeld A, Reimers JR, Taffet EJ, Raccah DIGB. Simulating optical linear absorption for mesoscale molecular aggregates: An adaptive hierarchy of pure states approach. J Chem Phys 2023; 158:2887556. [PMID: 37125709 DOI: 10.1063/5.0141882] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2023] [Accepted: 03/07/2023] [Indexed: 05/02/2023] Open
Abstract
In this paper, we present dyadic adaptive HOPS (DadHOPS), a new method for calculating linear absorption spectra for large molecular aggregates. This method combines the adaptive HOPS (adHOPS) framework, which uses locality to improve computational scaling, with the dyadic HOPS method previously developed to calculate linear and nonlinear spectroscopic signals. To construct a local representation of dyadic HOPS, we introduce an initial state decomposition that reconstructs the linear absorption spectra from a sum over locally excited initial conditions. We demonstrate the sum over initial conditions can be efficiently Monte Carlo sampled and that the corresponding calculations achieve size-invariant [i.e., O(1)] scaling for sufficiently large aggregates while trivially incorporating static disorder in the Hamiltonian. We present calculations on the photosystem I core complex to explore the behavior of the initial state decomposition in complex molecular aggregates as well as proof-of-concept DadHOPS calculations on an artificial molecular aggregate inspired by perylene bis-imide to demonstrate the size-invariance of the method.
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Affiliation(s)
- Tarun Gera
- Department of Chemistry, Southern Methodist University, P.O. Box, Dallas, Texas 750314, USA
| | - Lipeng Chen
- Max Planck Institute for the Physics of Complex Systems, Nöthnitzer Str. 38, Dresden, Germany
| | - Alexander Eisfeld
- Max Planck Institute for the Physics of Complex Systems, Nöthnitzer Str. 38, Dresden, Germany
| | - Jeffrey R Reimers
- International Centre for Quantum and Molecular Structures and the School of Physics, Shanghai University, 200444 Shanghai, China
- School of Mathematical and Physical Sciences, University of Technology Sydney, Sydney NSW 2007, Australia
| | - Elliot J Taffet
- Department of Chemistry, Southern Methodist University, P.O. Box, Dallas, Texas 750314, USA
| | - Doran I G B Raccah
- Department of Chemistry, Southern Methodist University, P.O. Box, Dallas, Texas 750314, USA
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13
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Tully JC. Ehrenfest dynamics with quantum mechanical nuclei. Chem Phys Lett 2023. [DOI: 10.1016/j.cplett.2023.140396] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/06/2023]
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14
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Nam Y, Song H, Freixas VM, Keefer D, Fernandez-Alberti S, Lee JY, Garavelli M, Tretiak S, Mukamel S. Monitoring vibronic coherences and molecular aromaticity in photoexcited cyclooctatetraene with an X-ray probe: a simulation study. Chem Sci 2023; 14:2971-2982. [PMID: 36937575 PMCID: PMC10016608 DOI: 10.1039/d2sc04335a] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Accepted: 02/07/2023] [Indexed: 02/16/2023] Open
Abstract
Understanding conical intersection (CI) dynamics and subsequent conformational changes is key for exploring and controlling photo-reactions in aromatic molecules. Monitoring of their time-resolved dynamics remains a formidable experimental challenge. In this study, we simulate the photoinduced S3 to S1 non-adiabatic dynamics of cyclooctatetraene (COT), involving multiple CIs with relaxation times in good agreement with experiment. We further investigate the possibility to directly probe the CI passages in COT by off-resonant X-ray Raman spectroscopy (TRUECARS) and time-resolved X-ray diffraction (TRXD). We find that these signals sensitively monitor key chemical features during the ultrafast dynamics. First, we distinguish two CIs by using TRUECARS signals with their appearances at different Raman shifts. Second, we demonstrate that TRXD, where X-ray photons scatter off electron densities, can resolve ultrafast changes in the aromaticity of COT. It can further distinguish between planar and non-planar geometries explored during the dynamics, as e.g. two different tetraradical-type CIs. The knowledge gained from these measurements can give unique insight into fundamental chemical properties that dynamically change during non-adiabatic passages.
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Affiliation(s)
- Yeonsig Nam
- Department of Chemistry, University of California Irvine California 92697-2025 USA
| | - Huajing Song
- Physics and Chemistry of Materials, Theoretical Division, Los Alamos National Laboratory Los Alamos New Mexico 87545 USA
| | - Victor M Freixas
- Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes/CONICET B1876BXD Bernal Argentina
| | - Daniel Keefer
- Department of Chemistry, University of California Irvine California 92697-2025 USA
| | | | - Jin Yong Lee
- Department of Chemistry, Sungkyunkwan University Suwon 16419 Korea
| | - Marco Garavelli
- Dipartimento di Chimica Industriale "Toso Montanari,", Universita' degli Studi di Bologna I-40136 Bologna Italy
| | - Sergei Tretiak
- Physics and Chemistry of Materials, Theoretical Division, Los Alamos National Laboratory Los Alamos New Mexico 87545 USA
| | - Shaul Mukamel
- Department of Chemistry, University of California Irvine California 92697-2025 USA
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15
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Penfold TJ, Eng J. Mind the GAP: quantifying the breakdown of the linear vibronic coupling Hamiltonian. Phys Chem Chem Phys 2023; 25:7195-7204. [PMID: 36820783 DOI: 10.1039/d2cp05576g] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]
Abstract
Excited state dynamics play a critical role across a broad range of scientific fields. Importantly, the highly non-equilibrium nature of the states generated by photoexcitation means that excited state simulations should usually include an accurate description of the coupled electronic-nuclear motion, which often requires solving the time-dependent Schrödinger equation (TDSE). One of the biggest challenges for these simulations is the requirement to calculate the PES over which the nuclei evolve. An effective approach for addressing this challenge is to use the approximate linear vibronic coupling (LVC) Hamiltonian, which enables a model potential to be parameterised using relatively few quantum chemistry calculations. However, this approach is only valid provided there are no large amplitude motions in the excited state dynamics. In this paper we introduce and deploy a metric, the global anharmonicity parameter (GAP), which can be used to assess the accuracy of an LVC potential. Following its derivation, we illustrate its utility by applying it to three molecules exhibiting different rigidity in their excited states.
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Affiliation(s)
- Thomas J Penfold
- Chemistry, School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK.
| | - Julien Eng
- Chemistry, School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK.
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16
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Zhao Y. The hierarchy of Davydov's Ansätze: From guesswork to numerically "exact" many-body wave functions. J Chem Phys 2023; 158:080901. [PMID: 36859105 DOI: 10.1063/5.0140002] [Citation(s) in RCA: 17] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023] Open
Abstract
This Perspective presents an overview of the development of the hierarchy of Davydov's Ansätze and a few of their applications in many-body problems in computational chemical physics. Davydov's solitons originated in the investigation of vibrational energy transport in proteins in the 1970s. Momentum-space projection of these solitary waves turned up to be accurate variational ground-state wave functions for the extended Holstein molecular crystal model, lending unambiguous evidence to the absence of formal quantum phase transitions in Holstein systems. The multiple Davydov Ansätze have been proposed, with increasing Ansatz multiplicity, as incremental improvements of their single-Ansatz parents. For a given Hamiltonian, the time-dependent variational formalism is utilized to extract accurate dynamic and spectroscopic properties using Davydov's Ansätze as its trial states. A quantity proven to disappear for large multiplicities, the Ansatz relative deviation is introduced to quantify how closely the Schrödinger equation is obeyed. Three finite-temperature extensions to the time-dependent variation scheme are elaborated, i.e., the Monte Carlo importance sampling, the method of thermofield dynamics, and the method of displaced number states. To demonstrate the versatility of the methodology, this Perspective provides applications of Davydov's Ansätze to the generalized Holstein Hamiltonian, variants of the spin-boson model, and systems of cavity-assisted singlet fission, where accurate dynamic and spectroscopic properties of the many-body systems are given by the Davydov trial states.
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Affiliation(s)
- Yang Zhao
- Division of Materials Science, Nanyang Technological University, Singapore 639798, Singapore
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17
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Lassmann Y, Hollas D, Curchod BFE. Extending the Applicability of the Multiple-Spawning Framework for Nonadiabatic Molecular Dynamics. J Phys Chem Lett 2022; 13:12011-12018. [PMID: 36541684 PMCID: PMC9806853 DOI: 10.1021/acs.jpclett.2c03295] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Accepted: 12/07/2022] [Indexed: 06/17/2023]
Abstract
Ab initio multiple-spawning (AIMS) describes the nonadiabatic dynamics of molecules by expanding nuclear wave functions in a basis of traveling multidimensional Gaussians called trajectory basis functions (TBFs). New TBFs can be spawned whenever nuclear amplitude is transferred between electronic states due to nonadiabatic transitions. While the adaptive size of the TBF basis grants AIMS its characteristic accuracy in describing nonadiabatic processes, it also leads to a fast and uncontrolled growth of the number of TBFs, penalizing computational efficiency. A different flavor of AIMS, called AIMS with informed stochastic selections (AIMSWISS), has recently been proposed to reduce the number of TBFs dramatically. Herein, we test the performance of AIMSWISS for a series of challenging nonadiabatic processes─photodynamics of two-dimensional model systems, 1,2-dithiane and chromium (0) hexacarbonyl─and show that this method is robust and extends the range of molecular systems that can be simulated within the multiple-spawning framework.
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18
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Gelin MF, Chen L, Domcke W. Equation-of-Motion Methods for the Calculation of Femtosecond Time-Resolved 4-Wave-Mixing and N-Wave-Mixing Signals. Chem Rev 2022; 122:17339-17396. [PMID: 36278801 DOI: 10.1021/acs.chemrev.2c00329] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
Femtosecond nonlinear spectroscopy is the main tool for the time-resolved detection of photophysical and photochemical processes. Since most systems of chemical interest are rather complex, theoretical support is indispensable for the extraction of the intrinsic system dynamics from the detected spectroscopic responses. There exist two alternative theoretical formalisms for the calculation of spectroscopic signals, the nonlinear response-function (NRF) approach and the spectroscopic equation-of-motion (EOM) approach. In the NRF formalism, the system-field interaction is assumed to be sufficiently weak and is treated in lowest-order perturbation theory for each laser pulse interacting with the sample. The conceptual alternative to the NRF method is the extraction of the spectroscopic signals from the solutions of quantum mechanical, semiclassical, or quasiclassical EOMs which govern the time evolution of the material system interacting with the radiation field of the laser pulses. The NRF formalism and its applications to a broad range of material systems and spectroscopic signals have been comprehensively reviewed in the literature. This article provides a detailed review of the suite of EOM methods, including applications to 4-wave-mixing and N-wave-mixing signals detected with weak or strong fields. Under certain circumstances, the spectroscopic EOM methods may be more efficient than the NRF method for the computation of various nonlinear spectroscopic signals.
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Affiliation(s)
- Maxim F Gelin
- School of Science, Hangzhou Dianzi University, Hangzhou 310018, China
| | - Lipeng Chen
- Max-Planck-Institut für Physik komplexer Systeme, Nöthnitzer Strasse 38, D-01187 Dresden, Germany
| | - Wolfgang Domcke
- Department of Chemistry, Technical University of Munich, D-85747 Garching,Germany
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19
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Joubert-Doriol L. Variational Approach for Linearly Dependent Moving Bases in Quantum Dynamics: Application to Gaussian Functions. J Chem Theory Comput 2022; 18:5799-5809. [PMID: 36166838 DOI: 10.1021/acs.jctc.2c00461] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
In this paper, we present a variational treatment of the linear dependence for a non-orthogonal time-dependent basis set in solving the Schrödinger equation. The method is based on (i) the definition of a linearly independent working space and (ii) a variational construction of the propagator over finite time steps. The second point allows the method to properly account for changes in the dimensionality of the working space along the time evolution. In particular, the time evolution is represented by a semi-unitary transformation. Tests are carried out on a quartic double-well potential with Gaussian basis functions whose centers evolve according to classical equations of motion. We show that the resulting dynamics converges to the exact one and is unitary by construction.
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Affiliation(s)
- Loïc Joubert-Doriol
- Université Gustave Eiffel, Université Paris-Est Créteil, CNRS, UMR 8208, MSME, F-77454 Marne-la-Vallée, France
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20
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Ten Brink M, Gräber S, Hopjan M, Jansen D, Stolpp J, Heidrich-Meisner F, Blöchl PE. Real-time non-adiabatic dynamics in the one-dimensional Holstein model: Trajectory-based vs exact methods. J Chem Phys 2022; 156:234109. [PMID: 35732530 DOI: 10.1063/5.0092063] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We benchmark a set of quantum-chemistry methods, including multitrajectory Ehrenfest, fewest-switches surface-hopping, and multiconfigurational-Ehrenfest dynamics, against exact quantum-many-body techniques by studying real-time dynamics in the Holstein model. This is a paradigmatic model in condensed matter theory incorporating a local coupling of electrons to Einstein phonons. For the two-site and three-site Holstein model, we discuss the exact and quantum-chemistry methods in terms of the Born-Huang formalism, covering different initial states, which either start on a single Born-Oppenheimer surface, or with the electron localized to a single site. For extended systems with up to 51 sites, we address both the physics of single Holstein polarons and the dynamics of charge-density waves at finite electron densities. For these extended systems, we compare the quantum-chemistry methods to exact dynamics obtained from time-dependent density matrix renormalization group calculations with local basis optimization (DMRG-LBO). We observe that the multitrajectory Ehrenfest method, in general, only captures the ultrashort time dynamics accurately. In contrast, the surface-hopping method with suitable corrections provides a much better description of the long-time behavior but struggles with the short-time description of coherences between different Born-Oppenheimer states. We show that the multiconfigurational Ehrenfest method yields a significant improvement over the multitrajectory Ehrenfest method and can be converged to the exact results in small systems with moderate computational efforts. We further observe that for extended systems, this convergence is slower with respect to the number of configurations. Our benchmark study demonstrates that DMRG-LBO is a useful tool for assessing the quality of the quantum-chemistry methods.
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Affiliation(s)
- M Ten Brink
- Institut für Theoretische Physik, Georg-August-Universität Göttingen, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany
| | - S Gräber
- Institut für Theoretische Physik, Georg-August-Universität Göttingen, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany
| | - M Hopjan
- Institut für Theoretische Physik, Georg-August-Universität Göttingen, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany
| | - D Jansen
- Institut für Theoretische Physik, Georg-August-Universität Göttingen, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany
| | - J Stolpp
- Institut für Theoretische Physik, Georg-August-Universität Göttingen, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany
| | - F Heidrich-Meisner
- Institut für Theoretische Physik, Georg-August-Universität Göttingen, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany
| | - P E Blöchl
- Institut für Theoretische Physik, Georg-August-Universität Göttingen, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany
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21
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Axelrod S, Shakhnovich E, Gómez-Bombarelli R. Excited state non-adiabatic dynamics of large photoswitchable molecules using a chemically transferable machine learning potential. Nat Commun 2022; 13:3440. [PMID: 35705543 PMCID: PMC9200747 DOI: 10.1038/s41467-022-30999-w] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2021] [Accepted: 05/23/2022] [Indexed: 12/31/2022] Open
Abstract
Light-induced chemical processes are ubiquitous in nature and have widespread technological applications. For example, photoisomerization can allow a drug with a photo-switchable scaffold such as azobenzene to be activated with light. In principle, photoswitches with desired photophysical properties like high isomerization quantum yields can be identified through virtual screening with reactive simulations. In practice, these simulations are rarely used for screening, since they require hundreds of trajectories and expensive quantum chemical methods to account for non-adiabatic excited state effects. Here we introduce a diabatic artificial neural network (DANN), based on diabatic states, to accelerate such simulations for azobenzene derivatives. The network is six orders of magnitude faster than the quantum chemistry method used for training. DANN is transferable to azobenzene molecules outside the training set, predicting quantum yields for unseen species that are correlated with experiment. We use the model to virtually screen 3100 hypothetical molecules, and identify novel species with high predicted quantum yields. The model predictions are confirmed using high-accuracy non-adiabatic dynamics. Our results pave the way for fast and accurate virtual screening of photoactive compounds.
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Affiliation(s)
- Simon Axelrod
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, 02138, USA
- Department of Materials Science and Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
| | - Eugene Shakhnovich
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, 02138, USA
| | - Rafael Gómez-Bombarelli
- Department of Materials Science and Engineering, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.
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22
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Asaad M, Joubert-Doriol L, Izmaylov AF. Controlling energy conservation in quantum dynamics with independently moving basis functions: Application to multi-configuration Ehrenfest. J Chem Phys 2022; 156:204121. [PMID: 35649883 DOI: 10.1063/5.0087797] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Application of the time-dependent variational principle to a linear combination of frozen-width Gaussians describing the nuclear wavefunction provides a formalism where the total energy is conserved. The computational downside of this formalism is that trajectories of individual Gaussians are solutions of a coupled system of differential equations, limiting implementation to serial propagation algorithms. To allow for parallelization and acceleration of the computation, independent trajectories based on simplified equations of motion were suggested. Unfortunately, within practical realizations involving finite Gaussian bases, this simplification leads to breaking the energy conservation. We offer a solution for this problem by using Lagrange multipliers to ensure the energy and norm conservation regardless of basis function trajectories or basis completeness. We illustrate our approach within the multi-configurational Ehrenfest method considering a linear vibronic coupling model.
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Affiliation(s)
- Mina Asaad
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, Ontario M1C 1A4, Canada
| | - Loïc Joubert-Doriol
- Univ Gustave Eiffel, Univ Paris Est Creteil, CNRS, UMR 8208, MSME, F-77454 Marne-la-Vallée, France
| | - Artur F Izmaylov
- Department of Physical and Environmental Sciences, University of Toronto Scarborough, Toronto, Ontario M1C 1A4, Canada
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23
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Fischer EW, Werther M, Bouakline F, Grossmann F, Saalfrank P. Non-Markovian Vibrational Relaxation Dynamics at Surfaces. J Chem Phys 2022; 156:214702. [DOI: 10.1063/5.0092836] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Vibrational dynamics of adsorbates near surfaces plays both an important role for applied surface science and as model lab for studying fundamental problems of open quantum systems. We employ a previously developed model for the relaxation of a D-Si-Si bending mode at a D:Si(100)-(2$\times$1) surface, induced by a ``bath' of more than $2000$ phonon modes [U. Lorenz, P. Saalfrank, Chem. Phys. {\bf 482}, 69 (2017)], to extend previous work along various directions. First, we use a Hierarchical Effective Mode (HEM) model [E.W. Fischer, F. Bouakline, M. Werther, P. Saalfrank, J. Chem. Phys. {\bf 153}, 064704 (2020)] to study relaxation of higher excited vibrational states than hitherto done, by solving a high-dimensional system-bath time-dependent Schr\"odinger equation (TDSE). In the HEM approach, (many) real bath modes are replaced by (much less) effective bath modes. Accordingly, we are able to examine scaling laws for vibrational relaxation lifetimes for a realistic surface science problem. Second, we compare the performance of the multilayer multiconfigurational time-dependent Hartree (ML-MCTDH) approach with the recently developed coherent-state based multi-Davydov D2 {\it ansatz} [N. Zhou, Z. Huang, J. Zhu, V. Chernyak, Y. Zhao, {J. Chem. Phys.} {\bf 143}, 014113 (2015)]. Both approaches work well, with some computational advantages for the latter in the presented context. Third, we apply open-system density matrix theory in comparison with basically ``exact' solutions of the multi-mode TDSEs. Specifically, we use an open-system Liouville-von Neumann (LvN) equation treating vibration-phonon coupling as Markovian dissipation in Lindblad form to quantify effects beyond the Born-Markov approximation.
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Affiliation(s)
| | | | - Foudhil Bouakline
- Institute of Chemistry, Universität Potsdam Institut für Chemie, Germany
| | - Frank Grossmann
- Institute for Theoretical Physics, Technische Universität Dresden Fachrichtung Physik, Germany
| | - Peter Saalfrank
- Institut für Chemie, Universität Potsdam Institut für Chemie, Germany
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24
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Chen L, Bennett DIG, Eisfeld A. Simulation of absorption spectra of molecular aggregates: A hierarchy of stochastic pure state approach. J Chem Phys 2022; 156:124109. [DOI: 10.1063/5.0078435] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Simulation of spectroscopic observables for molecular aggregates with strong and structured coupling of electronic excitation to vibrational degrees of freedom is an important but challenging task. The Hierarchy of Pure States (HOPS) provides a formally exact solution based on local, stochastic trajectories. Exploiting the localization of HOPS for the simulation of absorption spectra in large aggregates requires a formulation in terms of normalized trajectories. Here, we provide a normalized dyadic equation where the ket- and bra-states are propagated in different electronic Hilbert spaces. This work opens the door to applying adaptive HOPS methods for the simulation of absorption spectra.
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Affiliation(s)
- Lipeng Chen
- Max Planck Institute for the Physics of Complex Systems, Nöthnitzer Str. 38, Dresden, Germany
| | - Doran I. G. Bennett
- Department of Chemistry, Southern Methodist University, P.O. Box 750314, Dallas, Texas 75205, USA
| | - Alexander Eisfeld
- Max Planck Institute for the Physics of Complex Systems, Nöthnitzer Str. 38, Dresden, Germany
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25
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Schuurman MS, Blanchet V. Time-resolved photoelectron spectroscopy: the continuing evolution of a mature technique. Phys Chem Chem Phys 2022; 24:20012-20024. [PMID: 35297909 DOI: 10.1039/d1cp05885a] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Time-resolved photoelectron spectroscopy (TRPES) has become one of the most widespread techniques for probing nonadiabatic dynamics in the excited electronic states of molecules. Furthermore, the complementary development of ab initio approaches for the simulation of TRPES signals has enabled the interpretation of these transient spectra in terms of underlying coupled electronic-nuclear dynamics. In this perspective, we discuss the current state-of-the-art approaches, including efforts to push femtosecond pulses into vacuum ultraviolet and soft X-ray regimes as well as the utilization of novel polarizations to use time-resolved optical activity as a probe of nonadiabatic dynamics. We close this perspective with a forward-looking prospectus on the new areas of application for this technique.
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Affiliation(s)
- Michael S Schuurman
- National Research Council of Canada, 100 Sussex Dr, Ottawa, ON, K1N 6B9, Canada.,Department of Chemistry and Biomolecular Sciences, University of Ottawa, 10 Marie Curie Dr, Ottawa, ON, Canada.
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26
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Li B, Xu J, Li G, Shi Z, Wang L. A Mixed Deterministic-Stochastic Algorithm of the Branching Corrected Mean Field Method for Nonadiabatic Dynamics. J Chem Phys 2022; 156:114116. [DOI: 10.1063/5.0084013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We present a new algorithm of the branching corrected mean field (BCMF) method for nonadiabatic dynamics [J. Xu and L. Wang, J. Phys. Chem. Lett. 11, 8283 (2020)], which combines the key advantages of the two existed algorithms, i.e., the deterministic BCMF algorithm based on weights of trajectory branches (BCMF-w) and the stochastic BCMF algorithm with random collapse of the electronic wavefunction (BCMF-s). The resulting mixed deterministic-stochastic BCMF algorithm (BCMF-ws) is benchmarked in a series of standard scattering problems with potential wells on the excited-state surfaces, which are common in realistic systems. In all investigated cases, BCMF-ws holds the same high accuracy while the computational time is reduced about two orders of magnitude compared to the original BCMF-w and BCMF-s algorithms, thus promising for nonadiabatic dynamics simulations of general systems.
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Affiliation(s)
| | | | | | | | - Linjun Wang
- Department of Chemistry, Zhejiang University, China
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27
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Zhao Y, Sun K, Chen L, Gelin M. The hierarchy of Davydov's Ansätze and its applications. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2021. [DOI: 10.1002/wcms.1589] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Yang Zhao
- Division of Materials Science Nanyang Technological University Singapore Singapore
| | - Kewei Sun
- Division of Materials Science Nanyang Technological University Singapore Singapore
- School of Science, Hanghzhou Dianzi University Hangzhou China
| | - Lipeng Chen
- Max Planck Institute for the Physics of Complex Systems Dresden Germany
| | - Maxim Gelin
- School of Science, Hanghzhou Dianzi University Hangzhou China
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28
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Ibele LM, Curchod BFE. Dynamics near a conical intersection-A diabolical compromise for the approximations of ab initio multiple spawning. J Chem Phys 2021; 155:174119. [PMID: 34742188 DOI: 10.1063/5.0071376] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Full multiple spawning (FMS) offers an exciting framework for the development of strategies to simulate the excited-state dynamics of molecular systems. FMS proposes to depict the dynamics of nuclear wavepackets by using a growing set of traveling multidimensional Gaussian functions called trajectory basis functions (TBFs). Perhaps the most recognized method emanating from FMS is the so-called ab initio multiple spawning (AIMS). In AIMS, the couplings between TBFs-in principle exact in FMS-are approximated to allow for the on-the-fly evaluation of required electronic-structure quantities. In addition, AIMS proposes to neglect the so-called second-order nonadiabatic couplings and the diagonal Born-Oppenheimer corrections. While AIMS has been applied successfully to simulate the nonadiabatic dynamics of numerous complex molecules, the direct influence of these missing or approximated terms on the nonadiabatic dynamics when approaching and crossing a conical intersection remains unknown to date. It is also unclear how AIMS could incorporate geometric-phase effects in the vicinity of a conical intersection. In this work, we assess the performance of AIMS in describing the nonadiabatic dynamics through a conical intersection for three two-dimensional, two-state systems that mimic the excited-state dynamics of bis(methylene)adamantyl, butatriene cation, and pyrazine. The population traces and nuclear density dynamics are compared with numerically exact quantum dynamics and trajectory surface hopping results. We find that AIMS offers a qualitatively correct description of the dynamics through a conical intersection for the three model systems. However, any attempt at improving the AIMS results by accounting for the originally neglected second-order nonadiabatic contributions appears to be stymied by the hermiticity requirement of the AIMS Hamiltonian and the independent first-generation approximation.
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Affiliation(s)
- Lea M Ibele
- Department of Chemistry, Durham University, South Road, Durham DH1 3LE, United Kingdom
| | - Basile F E Curchod
- Department of Chemistry, Durham University, South Road, Durham DH1 3LE, United Kingdom
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29
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Choi S, Vaníček J. High-order geometric integrators for representation-free Ehrenfest dynamics. J Chem Phys 2021; 155:124104. [PMID: 34598577 DOI: 10.1063/5.0061878] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Abstract
Ehrenfest dynamics is a useful approximation for ab initio mixed quantum-classical molecular dynamics that can treat electronically nonadiabatic effects. Although a severe approximation to the exact solution of the molecular time-dependent Schrödinger equation, Ehrenfest dynamics is symplectic, is time-reversible, and conserves exactly the total molecular energy as well as the norm of the electronic wavefunction. Here, we surpass apparent complications due to the coupling of classical nuclear and quantum electronic motions and present efficient geometric integrators for "representation-free" Ehrenfest dynamics, which do not rely on a diabatic or adiabatic representation of electronic states and are of arbitrary even orders of accuracy in the time step. These numerical integrators, obtained by symmetrically composing the second-order splitting method and exactly solving the kinetic and potential propagation steps, are norm-conserving, symplectic, and time-reversible regardless of the time step used. Using a nonadiabatic simulation in the region of a conical intersection as an example, we demonstrate that these integrators preserve the geometric properties exactly and, if highly accurate solutions are desired, can be even more efficient than the most popular non-geometric integrators.
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Affiliation(s)
- Seonghoon Choi
- Laboratory of Theoretical Physical Chemistry, Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Jiří Vaníček
- Laboratory of Theoretical Physical Chemistry, Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
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30
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Chen L, Borrelli R, Shalashilin DV, Zhao Y, Gelin MF. Simulation of Time- and Frequency-Resolved Four-Wave-Mixing Signals at Finite Temperatures: A Thermo-Field Dynamics Approach. J Chem Theory Comput 2021; 17:4359-4373. [PMID: 34107216 DOI: 10.1021/acs.jctc.1c00259] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We propose a new approach to simulate four-wave-mixing signals of molecular systems at finite temperatures by combining the multiconfigurational Ehrenfest method with the thermo-field dynamics theory. In our approach, the four-time correlation functions at finite temperatures are mapped onto those at zero temperature in an enlarged Hilbert space with twice the vibrational degrees of freedom. As an illustration, we have simulated three multidimensional spectroscopic signals, time- and frequency-resolved fluorescence spectra, transient-absorption pump-probe spectra, and electronic two-dimensional (2D) spectra at finite temperatures, for a conical intersection-mediated singlet fission model of a rubrene crystal. It is shown that a detailed dynamical picture of the singlet fission process can be extracted from the three spectroscopic signals. An increasing temperature leads to lower intensities of the signals and broadened vibrational peaks, which can be attributed to faster singlet-triplet population transfer and stronger bath-induced electronic dephasing at higher temperatures.
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Affiliation(s)
- Lipeng Chen
- Max Planck Institute for the Physics of Complex Systems, Nöthnitzer Str 38, 01187 Dresden, Germany
| | - Raffaele Borrelli
- Department of Agricultural, Forestry and Food Science, Universitá di Torino, I-10095 Grugliasco, TO, Italy
| | | | - Yang Zhao
- Division of Materials Science, Nanyang Technological University, Singapore 639798, Singapore
| | - Maxim F Gelin
- School of Science, Hangzhou Dianzi University, Hangzhou 310018, China
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31
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Lassmann Y, Curchod BFE. AIMSWISS-Ab initio multiple spawning with informed stochastic selections. J Chem Phys 2021; 154:211106. [PMID: 34240975 DOI: 10.1063/5.0052118] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023] Open
Abstract
Ab initio multiple spawning (AIMS) offers a reliable strategy to describe the excited-state dynamics and nonadiabatic processes of molecular systems. AIMS represents nuclear wavefunctions as linear combinations of traveling, coupled Gaussians called trajectory basis functions (TBFs) and uses a spawning algorithm to increase as needed the size of this basis set during nonadiabatic transitions. While the success of AIMS resides in this spawning algorithm, the dramatic increase in TBFs generated by multiple crossings between electronic states can rapidly lead to intractable dynamics. In this Communication, we introduce a new flavor of AIMS, coined ab initio multiple spawning with informed stochastic selections (AIMSWISS), which proposes a parameter-free strategy to beat the growing number of TBFs in an AIMS dynamics while preserving its accurate description of nonadiabatic transitions. The performance of AIMSWISS is validated against the photodynamics of ethylene, cyclopropanone, and fulvene. This technique, built upon the recently developed stochastic-selection AIMS, is intended to serve as a computationally affordable starting point for multiple spawning simulations.
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Affiliation(s)
- Yorick Lassmann
- Department of Chemistry, Durham University, South Road, Durham DH1 3LE, United Kingdom
| | - Basile F E Curchod
- Department of Chemistry, Durham University, South Road, Durham DH1 3LE, United Kingdom
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32
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Hu D, Xie Y, Peng J, Lan Z. On-the-Fly Symmetrical Quasi-Classical Dynamics with Meyer-Miller Mapping Hamiltonian for the Treatment of Nonadiabatic Dynamics at Conical Intersections. J Chem Theory Comput 2021; 17:3267-3279. [PMID: 34028268 DOI: 10.1021/acs.jctc.0c01249] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The on-the-fly version of the symmetrical quasi-classical dynamics method based on the Meyer-Miller mapping Hamiltonian (SQC/MM) is implemented to study the nonadiabatic dynamics at conical intersections of polyatomic systems. The current on-the-fly implementation of the SQC/MM method is based on the adiabatic representation and the dressed momentum. To include the zero-point energy (ZPE) correction of the electronic mapping variables, we employ both the γ-adjusted and γ-fixed approaches. Nonadiabatic dynamics of the methaniminium cation (CH2NH2+) and azomethane are simulated using the on-the-fly SQC/MM method. For CH2NH2+, both ZPE correction approaches give reasonable and consistent results. However, for azomethane, the γ-adjusted version of the SQC/MM dynamics behaves much better than the γ-fixed version. Further analysis indicates that it is always recommended to use the γ-adjusted SQC/MM dynamics in the on-the-fly simulation of photoinduced dynamics of polyatomic systems, particularly when the excited state is well separated from the ground state in the Franck-Condon region. This work indicates that the on-the-fly SQC/MM method is a powerful simulation protocol to deal with the nonadiabatic dynamics of realistic polyatomic systems.
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Affiliation(s)
- Deping Hu
- SCNU Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety & MOE Key Laboratory of Environmental Theoretical Chemistry, South China Normal University, Guangzhou 510006, China.,School of Environment, South China Normal University, Guangzhou 510006, China
| | - Yu Xie
- SCNU Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety & MOE Key Laboratory of Environmental Theoretical Chemistry, South China Normal University, Guangzhou 510006, China.,School of Environment, South China Normal University, Guangzhou 510006, China
| | - Jiawei Peng
- SCNU Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety & MOE Key Laboratory of Environmental Theoretical Chemistry, South China Normal University, Guangzhou 510006, China.,School of Environment, South China Normal University, Guangzhou 510006, China
| | - Zhenggang Lan
- SCNU Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety & MOE Key Laboratory of Environmental Theoretical Chemistry, South China Normal University, Guangzhou 510006, China.,School of Environment, South China Normal University, Guangzhou 510006, China
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33
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Di Maiolo F, Worth GA, Burghardt I. Multi-layer Gaussian-based multi-configuration time-dependent Hartree (ML-GMCTDH) simulations of ultrafast charge separation in a donor-acceptor complex. J Chem Phys 2021; 154:144106. [PMID: 33858146 DOI: 10.1063/5.0046933] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We report on first applications of the Multi-Layer Gaussian-based Multi-Configuration Time-Dependent Hartree (ML-GMCTDH) method [Römer et al., J. Chem. Phys. 138, 064106 (2013)] beyond its basic two-layer variant. The ML-GMCTDH scheme provides an embedding of a variationally evolving Gaussian wavepacket basis into a hierarchical tensor representation of the wavefunction. A first-principles parameterized model Hamiltonian for ultrafast non-adiabatic dynamics in an oligothiophene-fullerene charge transfer complex is employed, relying on a two-state linear vibronic coupling model that combines a distribution of tuning type modes with an intermolecular coordinate that also modulates the electronic coupling. Efficient ML-GMCTDH simulations are carried out for up to 300 vibrational modes using an implementation within the QUANTICS program. Excellent agreement with reference ML-MCTDH calculations is obtained.
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Affiliation(s)
- Francesco Di Maiolo
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 7, 60438 Frankfurt, Germany
| | - Graham A Worth
- Department of Chemistry, University College London, 20 Gordon St., London WC1H 0AJ, United Kingdom
| | - Irene Burghardt
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 7, 60438 Frankfurt, Germany
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34
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Ibele LM, Lassmann Y, Martínez TJ, Curchod BFE. Comparing (stochastic-selection) ab initio multiple spawning with trajectory surface hopping for the photodynamics of cyclopropanone, fulvene, and dithiane. J Chem Phys 2021; 154:104110. [DOI: 10.1063/5.0045572] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Affiliation(s)
- Lea M. Ibele
- Department of Chemistry, Durham University, South Road, Durham DH1 3LE, United Kingdom
| | - Yorick Lassmann
- Department of Chemistry, Durham University, South Road, Durham DH1 3LE, United Kingdom
| | - Todd J. Martínez
- Department of Chemistry, Stanford University, Stanford, California 94305, USA and PULSE Institute, SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA
| | - Basile F. E. Curchod
- Department of Chemistry, Durham University, South Road, Durham DH1 3LE, United Kingdom
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35
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Chen L, Sun K, Shalashilin DV, Gelin MF, Zhao Y. Efficient simulation of time- and frequency-resolved four-wave-mixing signals with a multiconfigurational Ehrenfest approach. J Chem Phys 2021; 154:054105. [PMID: 33557567 DOI: 10.1063/5.0038824] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023] Open
Abstract
We have extended the multiconfigurational Ehrenfest approach to the simulation of four-wave-mixing signals of systems involving multiple electronic and vibrational degrees of freedom. As an illustration, we calculate signals of three widely used spectroscopic techniques, time- and frequency-resolved fluorescence spectroscopy, transient absorption spectroscopy, and two-dimensional (2D) electronic spectroscopy, for a two-electronic-state, twenty-four vibrational-mode conical intersection model. It has been shown that all these three spectroscopic signals characterize fast population transfer from the higher excited electronic state to the lower excited electronic state. While the time- and frequency-resolved spectrum maps the wave packet propagation exclusively on the electronically excited states, the transient absorption and 2D electronic spectra reflect the wave packet dynamics on both electronically excited states and the electronic ground state. Combining trajectory-guided Gaussian basis functions and the nonlinear response function formalism, the present approach provides a promising general technique for the applications of various Gaussian basis methods to the calculations of four-wave-mixing spectra of polyatomic molecules.
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Affiliation(s)
- Lipeng Chen
- Max Planck Institute for the Physics of Complex Systems, Nöthnitzer Str. 38, Dresden, Germany
| | - Kewei Sun
- School of Science, Hangzhou Dianzi University, Hangzhou 310018, China
| | | | - Maxim F Gelin
- School of Science, Hangzhou Dianzi University, Hangzhou 310018, China
| | - Yang Zhao
- Division of Materials Science, Nanyang Technological University, Singapore 639798, Singapore
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36
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Abstract
Coordination compounds, characterized by fascinating and tunable electronic properties, are capable of binding easily to proteins, polymers, wires and DNA. Upon irradiation, these molecular systems develop functions finding applications in solar cells, photocatalysis, luminescent and conformational probes, electron transfer triggers and diagnostic or therapeutic tools. The control of these functions is activated by the light wavelength, the metal/ligand cooperation and the environment within the first picoseconds (ps). After a brief summary of the theoretical background, this perspective reviews case studies, from 1st row to 3rd row transition metal complexes, that illustrate how spin-orbit, vibronic coupling and quantum effects drive the photophysics of this class of molecules at the early stage of the photoinduced elementary processes within the fs-ps time scale range.
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Affiliation(s)
- Chantal Daniel
- Laboratoire de Chimie Quantique, Université de Strasbourg, CNRS UMR7177, Institut Le Bel, 4 Rue Blaise Pascal, 67000 Strasbourg, France.
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37
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Mai S, González L. Molecular Photochemistry: Recent Developments in Theory. Angew Chem Int Ed Engl 2020; 59:16832-16846. [PMID: 32052547 PMCID: PMC7540682 DOI: 10.1002/anie.201916381] [Citation(s) in RCA: 86] [Impact Index Per Article: 21.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Revised: 02/12/2020] [Indexed: 12/16/2022]
Abstract
Photochemistry is a fascinating branch of chemistry that is concerned with molecules and light. However, the importance of simulating light-induced processes is reflected also in fields as diverse as biology, material science, and medicine. This Minireview highlights recent progress achieved in theoretical chemistry to calculate electronically excited states of molecules and simulate their photoinduced dynamics, with the aim of reaching experimental accuracy. We focus on emergent methods and give selected examples that illustrate the progress in recent years towards predicting complex electronic structures with strong correlation, calculations on large molecules, describing multichromophoric systems, and simulating non-adiabatic molecular dynamics over long time scales, for molecules in the gas phase or in complex biological environments.
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Affiliation(s)
- Sebastian Mai
- Photonics InstituteVienna University of TechnologyGusshausstrasse 27–291040ViennaAustria
| | - Leticia González
- Institute of Theoretical ChemistryFaculty of ChemistryUniversity of ViennaWähringer Strasse 171090ViennaAustria
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38
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Stolyarov EV, White AJ, Mozyrsky D. Mixed quantum-classical approach to model non-adiabatic electron-nuclear dynamics: Detailed balance and improved surface hopping method. J Chem Phys 2020; 153:074116. [PMID: 32828087 DOI: 10.1063/5.0014284] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
We develop a density matrix formalism to describe coupled electron-nuclear dynamics. To this end, we introduce an effective Hamiltonian formalism that describes electronic transitions and small (quantum) nuclear fluctuations along a classical trajectory of the nuclei. Using this Hamiltonian, we derive equations of motion for the electronic occupation numbers and for the nuclear coordinates and momenta. We show that, in the limit, when the number of nuclear degrees of freedom coupled to a given electronic transition is sufficiently high (i.e., the strong decoherence limit), the equations of motion for the electronic occupation numbers become Markovian. Furthermore, the transition rates in these (rate) equations are asymmetric with respect to the lower-to-higher energy transitions and vice versa. In thermal equilibrium, such asymmetry corresponds to the detailed balance condition. We also study the equations for the electronic occupations in the non-Markovian regime and develop a surface hopping algorithm based on our formalism. To treat the decoherence effects, we introduce additional "virtual" nuclear wave packets whose interference with the "real" (physical) wave packets leads to the reduction in coupling between the electronic states (i.e., decoherence) as well as to the phase shifts that improve the accuracy of the numerical approach. Remarkably, the same phase shifts lead to the detailed balance condition in the strong decoherence limit.
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Affiliation(s)
- E V Stolyarov
- Institute of Physics of the National Academy of Sciences of Ukraine, pr. Nauky 46, 03028 Kyiv, Ukraine
| | - A J White
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - D Mozyrsky
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
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39
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Mai S, González L. Molekulare Photochemie: Moderne Entwicklungen in der theoretischen Chemie. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.201916381] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Sebastian Mai
- Institut für Photonik Technische Universität Wien Gußhausstraße 27–29 1040 Wien Österreich
| | - Leticia González
- Institut für theoretische Chemie Fakultät für Chemie Universität Wien Währinger Straße 17 1090 Wien Österreich
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40
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Richings GW, Habershon S. A new diabatization scheme for direct quantum dynamics: Procrustes diabatization. J Chem Phys 2020; 152:154108. [DOI: 10.1063/5.0003254] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Gareth W. Richings
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, United Kingdom
| | - Scott Habershon
- Department of Chemistry, University of Warwick, Coventry CV4 7AL, United Kingdom
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41
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Freixas VM, Tretiak S, Makhov DV, Shalashilin DV, Fernandez-Alberti S. Vibronic Quantum Beating between Electronic Excited States in a Heterodimer. J Phys Chem B 2020; 124:3992-4001. [DOI: 10.1021/acs.jpcb.0c01685] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- V. M. Freixas
- Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes/CONICET, B1876BXD Bernal, Argentina
| | - S. Tretiak
- Theoretical Division, Center for Nonlinear Studies (CNLS), and Center for Integrated Nanotechnologies (CINT), Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - D. V. Makhov
- School of Chemistry, University of Leeds, Leeds LS2 9JT, U.K
- School of Mathematics, University of Bristol, Bristol BS8 1TW, U.K
| | | | - S. Fernandez-Alberti
- Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes/CONICET, B1876BXD Bernal, Argentina
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42
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Northey T, Norell J, Fouda AEA, Besley NA, Odelius M, Penfold TJ. Ultrafast nonadiabatic dynamics probed by nitrogen K-edge absorption spectroscopy. Phys Chem Chem Phys 2020; 22:2667-2676. [DOI: 10.1039/c9cp03019k] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Quantum dynamics simulations are used to simulate the ultrafast X-ray Absorption Near-Edge Structure (XANES) spectra of photoexcited pyrazine including two strongly coupled electronically excited states and four normal mode degrees of freedom.
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Affiliation(s)
- T. Northey
- Chemistry-School of Natural and Environmental Sciences
- Newcastle University
- Newcastle upon Tyne
- UK
| | - J. Norell
- Department of Physics
- Stockholm University
- AlbaNova University Center
- Stockholm
- Sweden
| | | | - N. A. Besley
- School of Chemistry
- University of Nottingham
- Nottingham
- UK
| | - M. Odelius
- Department of Physics
- Stockholm University
- AlbaNova University Center
- Stockholm
- Sweden
| | - T. J. Penfold
- Chemistry-School of Natural and Environmental Sciences
- Newcastle University
- Newcastle upon Tyne
- UK
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43
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Titov E, Humeniuk A, Mitrić R. Comparison of moving and fixed basis sets for nonadiabatic quantum dynamics at conical intersections. Chem Phys 2020. [DOI: 10.1016/j.chemphys.2019.110526] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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44
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Ibele LM, Curchod BFE. A molecular perspective on Tully models for nonadiabatic dynamics. Phys Chem Chem Phys 2020; 22:15183-15196. [DOI: 10.1039/d0cp01353f] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
We present a series of standardized molecular tests for nonadiabatic dynamics, reminiscent of the one-dimensional Tully models proposed in 1990.
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Affiliation(s)
- Lea M. Ibele
- Department of Chemistry
- Durham University
- Durham DH1 3LE
- UK
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45
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Chen L, Gelin MF, Shalashilin DV. Dynamics of a one-dimensional Holstein polaron: The multiconfigurational Ehrenfest method. J Chem Phys 2019; 151:244116. [DOI: 10.1063/1.5132341] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Affiliation(s)
- Lipeng Chen
- Department of Chemistry, Technische Universität München, Garching D-85747, Germany
| | - Maxim F. Gelin
- Department of Chemistry, Technische Universität München, Garching D-85747, Germany
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46
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Zheng J, Xie Y, Jiang S, Long Y, Ning X, Lan Z. Initial sampling in symmetrical quasiclassical dynamics based on Li-Miller mapping Hamiltonian. Phys Chem Chem Phys 2019; 21:26502-26514. [PMID: 31777888 DOI: 10.1039/c9cp03975a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
A symmetrical quasiclassical (SQC) dynamics approach based on the Li-Miller (LM) mapping Hamiltonian (SQC-LM) was employed to describe nonadiabatic dynamics. In principle, the different initial sampling procedures may be applied in the SQC-LM dynamics, and the results may be dependent on different initial sampling. We provided various initial sampling approaches and checked their influence. We selected two groups of models including site-exciton models for exciton dynamics and linear vibronic coupling models for conical intersections to test the performance of SQC-LM dynamics with the different initial sampling methods. The results were examined with respect to those of the accurate multiconfigurational time-dependent Hartree (MCTDH) quantum dynamics. For both the models, the SQC-LM method more-or-less gives a reasonable description of the population dynamics, while the influence of the initial sampling approaches on the final results is noticeable. It seems that the suitable initial sampling methods should be determined by the system under study. This indicates that the combination of the SQC-LM method with a suitable sampling approach may be a potential method in the description of nonadiabatic dynamics.
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Affiliation(s)
- Jie Zheng
- Industrial Research Institute of Nonwovens & Technical Textiles, College of Textiles Clothing, Qingdao University, Qingdao 266071, China.
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47
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Ibele LM, Nicolson A, Curchod BFE. Excited-state dynamics of molecules with classically driven trajectories and Gaussians. Mol Phys 2019. [DOI: 10.1080/00268976.2019.1665199] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
- Lea M. Ibele
- Department of Chemistry, Durham University, Durham, UK
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48
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Chang BY, Shin S, Malinovsky VS, Sola IR. Grid-Based Ehrenfest Model To Study Electron-Nuclear Processes. J Phys Chem A 2019; 123:7171-7176. [PMID: 31314529 DOI: 10.1021/acs.jpca.9b05214] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The two-dimensional electron-nuclear Schrödinger equation using soft-core Coulomb potentials has been a cornerstone for modeling and predicting the behavior of one-active-electron diatomic molecules, particularly for processes where both bound and continuum states are important. The model, however, is computationally expensive to extend to more electron or nuclear coordinates. Here we propose use of the Ehrenfest approach to treat the nuclear motion, while the electronic motion is still solved by quantum propagation on a grid. In this work, we present results for a one-dimensional treatment of H2+, where the quantum and semiclassical dynamics can be directly compared, showing remarkably good agreement for a variety of situations. The advantage of the Ehrenfest approach is that it can be easily extended to treat as many nuclear degrees of freedom as needed.
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Affiliation(s)
- Bo Y Chang
- School of Chemistry , Seoul National University , Seoul 08826 , Republic of Korea
| | - Seokmin Shin
- School of Chemistry , Seoul National University , Seoul 08826 , Republic of Korea
| | | | - Ignacio R Sola
- Departamento de Química Física , Universidad Complutense , 28040 Madrid , Spain
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49
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Fedorov DA, Levine BG. Nonadiabatic Quantum Molecular Dynamics in Dense Manifolds of Electronic States. J Phys Chem Lett 2019; 10:4542-4548. [PMID: 31342748 DOI: 10.1021/acs.jpclett.9b01902] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Most nonadiabatic molecular dynamics methods require the determination of a basis of adiabatic or diabatic electronic states at every time step, but in dense manifolds of electronic states, such approaches become intractable. A notable exception is Ehrenfest molecular dynamics, which can be implemented without explicit determination of such a basis but suffers from unphysical behavior when propagation on a mean-field potential energy surface (PES) does not accurately reflect the true dynamics on multiple electronic states. Here we introduce the multiple cloning for dense manifolds of states (MCDMS) method, a systematically improvable approximation to the multiple cloning method. MCDMS avoids both the mean-field PES problem and the need to compute the full electronic spectrum. This is achieved by reformulating multiple cloning to use a subspace of approximate eigenstates constructed from the time-dependent Ehrenfest electronic wave function. By application to model systems, we show that this approach allows a substantial reduction in the size of the required electronic basis without significant loss in accuracy.
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Affiliation(s)
- Dmitry A Fedorov
- Department of Chemistry , Michigan State University , East Lansing , Michigan 48824 , United States
| | - Benjamin G Levine
- Department of Chemistry , Michigan State University , East Lansing , Michigan 48824 , United States
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50
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Bramley O, Symonds C, Shalashilin DV. Quantum system-bath dynamics with quantum superposition sampling and coupled generalized coherent states. J Chem Phys 2019. [DOI: 10.1063/1.5100145] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Oliver Bramley
- School of Chemistry, University of Leeds, Leeds LS2 9JT, United Kingdom
| | - Christopher Symonds
- School of Chemistry, University of Leeds, Leeds LS2 9JT, United Kingdom
- School of Environment, University of Leeds, Leeds LS2 9JT, United Kingdom
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