1
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Deshpande VV, Chauhan V, Bandyopadhyay D, Anoop A, Bhattacharyya S. Structure of small yttrium monoxide clusters, chemical bonding, and photoionization: threshold photoionization and density functional theory investigations. Phys Chem Chem Phys 2024; 26:20123-20133. [PMID: 39011880 DOI: 10.1039/d4cp02351j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/17/2024]
Abstract
The photoionization (PI) spectra of small gas-phase yttrium monoxide clusters, YnO (n = 1-8), are investigated, and the adiabatic ionization energies are determined. The stable structures are obtained from density functional theory (DFT) calculations. The ground state structures are further confirmed by the CCSD(T) method. The PI spectra are calculated for these stable structures and are compared with the experimental PI spectra. The ground-state structures of the neutral and cation clusters are experimentally assigned with confidence on the basis of a favourable agreement between the experimental and calculated PI spectra. New structures are proposed for Y2O, Y6O, and Y8O compared to the previous literature. Y2O is a linear molecule in the ground state that was previously proposed as a C2v bent molecule. The YnO clusters become 3-dimensional from n ≥ 3. The O atom stays outside, bridging a triangular face of yttrium clusters. Chemical bonding between the yttrium and oxygen atoms is mostly ionic. The excess charge on the oxygen atom is around 1.4e-, transferred from the yttrium atoms bonded with it. Yttrium atoms are mostly covalently bonded. However, for the bigger clusters, free charges of both polarities appear on yttrium atoms that are not bonded with oxygen, indicating ionic interactions. Frontier orbitals consist of mainly delocalized 4d electrons with some 5s contributions, forming Y-Y bonding interactions, but with little contribution and zero contribution from the oxygen orbitals, regardless of the cluster size. The lost electron of YnO+ mostly comes from the 5s orbitals of all Y atoms in the cluster up to size n = 4, and then from 4d-5s hybrid orbitals from n ≥ 5, with the d contribution increasing with size. This is contrary to the previous view in the literature that photoionization occurs from a localized 4d orbital.
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Affiliation(s)
- Varun Vinayak Deshpande
- Atomic & Molecular Physics Division, Bhabha Atomic Research Centre, Mumbai 400 085, India.
- Homi Bhabha National Institute, Anushaktinagar, Mumbai 400 094, India
| | - Vaibhav Chauhan
- Atomic & Molecular Physics Division, Bhabha Atomic Research Centre, Mumbai 400 085, India.
| | - Debashis Bandyopadhyay
- Physics Department, Birla Institute of Technology and Science, Pilani 333031, Rajasthan, India
| | - Anakuthil Anoop
- School of Digital Sciences, Kerala University of Digital Science, Innovation, and Technology, Digital University Kerala, Technopark Phase IV, Pallipuram, Thiruvananthapuram, Kerala - 695317, India
| | - Soumen Bhattacharyya
- Atomic & Molecular Physics Division, Bhabha Atomic Research Centre, Mumbai 400 085, India.
- Homi Bhabha National Institute, Anushaktinagar, Mumbai 400 094, India
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2
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Zhou H, Kincaid B, Wang G, Annaberdiyev A, Ganesh P, Mitas L. A new generation of effective core potentials: Selected lanthanides and heavy elements. J Chem Phys 2024; 160:084302. [PMID: 38391016 DOI: 10.1063/5.0180057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Accepted: 11/05/2023] [Indexed: 02/24/2024] Open
Abstract
We construct correlation-consistent effective core potentials (ccECPs) for a selected set of heavy atoms and f elements that are currently of significant interest in materials and chemical applications, including Y, Zr, Nb, Rh, Ta, Re, Pt, Gd, and Tb. As is customary, ccECPs consist of spin-orbit (SO) averaged relativistic effective potential (AREP) and effective SO terms. For the AREP part, our constructions are carried out within a relativistic coupled-cluster framework while also taking into account objective function one-particle characteristics for improved convergence in optimizations. The transferability is adjusted using binding curves of hydride and oxide molecules. We address the difficulties encountered with f elements, such as the presence of large cores and multiple near-degeneracies of excited levels. For these elements, we construct ccECPs with core-valence partitioning that includes 4f subshell in the valence space. The developed ccECPs achieve an excellent balance between accuracy, size of the valence space, and transferability and are also suitable to be used in plane wave codes with reasonable energy cutoffs.
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Affiliation(s)
- Haihan Zhou
- Department of Physics, North Carolina State University, Raleigh, North Carolina 27695-8202, USA
| | - Benjamin Kincaid
- Department of Physics, North Carolina State University, Raleigh, North Carolina 27695-8202, USA
| | - Guangming Wang
- Department of Physics, North Carolina State University, Raleigh, North Carolina 27695-8202, USA
| | - Abdulgani Annaberdiyev
- Center for Nanophase Materials Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - Panchapakesan Ganesh
- Center for Nanophase Materials Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - Lubos Mitas
- Department of Physics, North Carolina State University, Raleigh, North Carolina 27695-8202, USA
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3
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D'haese LCG, Daugey N, Pitrat D, Brotin T, Kapitán J, Liégeois V. Understanding the surrounding effects on Raman optical activity signatures of a chiral cage system: Cryptophane-PP-111. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 306:123484. [PMID: 37898056 DOI: 10.1016/j.saa.2023.123484] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Revised: 09/18/2023] [Accepted: 10/01/2023] [Indexed: 10/30/2023]
Abstract
Cryptophane molecules are cage-like structures consisting in two hemispheres, each made of three benzene rings. These hemispheres are bound together with three O(CH2)nOlinkers of various lengths giving rise to a plethora of cryptophane derivatives. Moreover, they are able to encapsulate neutral guests: CH2Cl2, CHCl3, …; and charged species: Cs+, Tl+, …. Finally, they exhibit chiroptical properties thanks to the anti arrangement of the linkers between the hemispheres. This work focuses on the Raman optical activity (ROA) signatures of Cryptophane-111 (n=1 for each linker). More specifically, we aim at simulating accurately its ROA spectra with and without a xenon atom inside its cavity. Experimental data (Buffeteau et al., 2017) have already demonstrated the effect of the encapsulation in the low-wavenumbers region. To generate the initial structures, we rely on the novel Conformer-Rotamer Ensemble Sampling Tool (CREST) program, developed by S. Grimme and co-workers. This is required due to the flexibility provided by the linkers. The CREST algorithm seems promising and has already been used to sample the potential energy surface (PES) of target systems before the simulation of their vibrational spectroscopies (Eikås et al., 2022). We observe large similarities between the two sets of conformers (one with and one without Xe encapsulated), demonstrating the robustness of the CREST algorithm. For corresponding structures, the presence of xenon pushed the two hemispheres slightly further apart. After optimization at the DFT level, only one unique conformer has a Boltzmann population ratio greater than 1%, pointing out the relative rigidity of the cage. Based on this unique conformer, our simulations are in good agreement with the experimental data. Regarding xenon encapsulation, the (experimental and theoretical) ROA signatures at low wavenumbers are impacted: slight shifts in wavenumbers are observed as well as a decrease in relative ROA intensity for bands around 150 cm-1. The wavenumber shifts were very well reproduced by our simulations, but the experimental decrease in the ROA intensity was unfortunately not reproduced.
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Affiliation(s)
- Lou C G D'haese
- Theoretical Chemistry Laboratory (LCT), Namur Institute of Structured Matter (NISM), University of Namur, 5000 Namur, Belgium.
| | - Nicolas Daugey
- Groupe Spectroscopie Moléculaire (GSM), Institut des Sciences Moléculaires (ISM), UMR-5255 CNRS, University of Bordeaux, 33405 Talence, France
| | - Delphine Pitrat
- Laboratoire de Chimie de l'ENSL, UMR-5182 CNRS, University of Lyon, 69342 Lyon, France
| | - Thierry Brotin
- Laboratoire de Chimie de l'ENSL, UMR-5182 CNRS, University of Lyon, 69342 Lyon, France
| | - Josef Kapitán
- Department of Optics, Palacký University of Olomouc, 77146 Olomouc, Czech Republic
| | - Vincent Liégeois
- Theoretical Chemistry Laboratory (LCT), Namur Institute of Structured Matter (NISM), University of Namur, 5000 Namur, Belgium
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4
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Erba A, Desmarais JK, Casassa S, Civalleri B, Donà L, Bush IJ, Searle B, Maschio L, Edith-Daga L, Cossard A, Ribaldone C, Ascrizzi E, Marana NL, Flament JP, Kirtman B. CRYSTAL23: A Program for Computational Solid State Physics and Chemistry. J Chem Theory Comput 2023; 19:6891-6932. [PMID: 36502394 PMCID: PMC10601489 DOI: 10.1021/acs.jctc.2c00958] [Citation(s) in RCA: 33] [Impact Index Per Article: 33.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Indexed: 12/14/2022]
Abstract
The Crystal program for quantum-mechanical simulations of materials has been bridging the realm of molecular quantum chemistry to the realm of solid state physics for many years, since its first public version released back in 1988. This peculiarity stems from the use of atom-centered basis functions within a linear combination of atomic orbitals (LCAO) approach and from the corresponding efficiency in the evaluation of the exact Fock exchange series. In particular, this has led to the implementation of a rich variety of hybrid density functional approximations since 1998. Nowadays, it is acknowledged by a broad community of solid state chemists and physicists that the inclusion of a fraction of Fock exchange in the exchange-correlation potential of the density functional theory is key to a better description of many properties of materials (electronic, magnetic, mechanical, spintronic, lattice-dynamical, etc.). Here, the main developments made to the program in the last five years (i.e., since the previous release, Crystal17) are presented and some of their most noteworthy applications reviewed.
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Affiliation(s)
- Alessandro Erba
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Jacques K. Desmarais
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Silvia Casassa
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Bartolomeo Civalleri
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Lorenzo Donà
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Ian J. Bush
- STFC
Rutherford Appleton Laboratory, Chilton Didcot, Oxfordshire OX11 0QX, United Kingdom
| | - Barry Searle
- SFTC
Daresbury Laboratory, Daresbury, Cheshire WA4 4AD, United Kingdom
| | - Lorenzo Maschio
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Loredana Edith-Daga
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Alessandro Cossard
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Chiara Ribaldone
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Eleonora Ascrizzi
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Naiara L. Marana
- Dipartimento
di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Jean-Pierre Flament
- Université
de Lille, CNRS, UMR 8523 — PhLAM — Physique des Lasers, Atomes et Molécules, 59000 Lille, France
| | - Bernard Kirtman
- Department
of Chemistry and Biochemistry, University
of California, Santa
Barbara, California 93106, United States
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5
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Rossomme E, Cunha LA, Li W, Chen K, McIsaac AR, Head-Gordon T, Head-Gordon M. The Good, the Bad, and the Ugly: Pseudopotential Inconsistency Errors in Molecular Applications of Density Functional Theory. J Chem Theory Comput 2023; 19:2827-2841. [PMID: 37156013 DOI: 10.1021/acs.jctc.3c00089] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
The pseudopotential (PP) approximation is one of the most common techniques in computational chemistry. Despite its long history, the development of custom PPs has not tracked with the explosion of different density functional approximations (DFAs). As a result, the use of PPs with exchange/correlation models for which they were not developed is widespread, although this practice is known to be theoretically unsound. The extent of PP inconsistency errors (PPIEs) associated with this practice has not been systematically explored across the types of energy differences commonly evaluated in chemical applications. We evaluate PPIEs for a number of PPs and DFAs across 196 chemically relevant systems of both transition-metal and main-group elements, as represented by the W4-11, TMC34, and S22 data sets. Near the complete basis set limit, these PPs are found to cleanly approach all-electron (AE) results for noncovalent interactions but introduce root-mean-squared errors (RMSEs) upwards of 15 kcal mol-1 into predictions of covalent bond energies for a number of popular DFAs. We achieve significant improvements through the use of empirical atom- and DFA-specific PP corrections, indicating considerable systematicity of the PPIEs. The results of this work have implications for chemical modeling in both molecular contexts and for DFA design, which we discuss.
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Affiliation(s)
- Elliot Rossomme
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Leonardo A Cunha
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Wanlu Li
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Kaixuan Chen
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Alexandra R McIsaac
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Teresa Head-Gordon
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Department of Bioengineering, University of California, Berkeley, California 94720, United States
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, California 94720, United States
| | - Martin Head-Gordon
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
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6
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Liao C, Kasper JM, Jenkins AJ, Yang P, Batista ER, Frisch MJ, Li X. State Interaction Linear Response Time-Dependent Density Functional Theory with Perturbative Spin-Orbit Coupling: Benchmark and Perspectives. JACS AU 2023; 3:358-367. [PMID: 36873704 PMCID: PMC9975852 DOI: 10.1021/jacsau.2c00659] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/04/2022] [Revised: 01/17/2023] [Accepted: 01/18/2023] [Indexed: 06/18/2023]
Abstract
Spin-orbit coupling (SOC) is an important driving force in photochemistry. In this work, we develop a perturbative spin-orbit coupling method within the linear response time-dependent density function theory framework (TDDFT-SO). A full state interaction scheme, including singlet-triplet and triplet-triplet coupling, is introduced to describe not only the coupling between the ground and excited states, but also between excited states with all couplings between spin microstates. In addition, expressions to compute spectral oscillator strengths are presented. Scalar relativity is included variationally using the second-order Douglas-Kroll-Hess Hamiltonian, and the TDDFT-SO method is validated against variational SOC relativistic methods for atomic, diatomic, and transition metal complexes to determine the range of applicability and potential limitations. To demonstrate the robustness of TDDFT-SO for large-scale chemical systems, the UV-Vis spectrum of Au25(SR)18 - is computed and compared to experiment. Perspectives on the limitation, accuracy, and capability of perturbative TDDFT-SO are presented via analyses of benchmark calculations. Additionally, an open-source Python software package (PyTDDFT-SO) is developed and released to interface with the Gaussian 16 quantum chemistry software package to perform this calculation.
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Affiliation(s)
- Can Liao
- Department
of Chemistry, University of Washington, Seattle, Washington98195, United States
| | - Joseph M. Kasper
- Theoretical
Division, Los Alamos National Laboratory, Los Alamos, New Mexico87545, United States
| | - Andrew J. Jenkins
- Department
of Chemistry, University of Washington, Seattle, Washington98195, United States
| | - Ping Yang
- Theoretical
Division, Los Alamos National Laboratory, Los Alamos, New Mexico87545, United States
| | - Enrique R. Batista
- Theoretical
Division, Los Alamos National Laboratory, Los Alamos, New Mexico87545, United States
| | - Michael J. Frisch
- Gaussian
Inc., 340 Quinnipiac Street, Bldg 40, Wallingford, Connecticut06492, United States
| | - Xiaosong Li
- Department
of Chemistry, University of Washington, Seattle, Washington98195, United States
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7
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Insight into the role of [C2C1mim][OAc] and AgNO3 in the reaction of propargylic alcohols, CO2, and 2-aminoethanols. MOLECULAR CATALYSIS 2023. [DOI: 10.1016/j.mcat.2022.112909] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
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8
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Müller M, Hansen A, Grimme S. ωB97X-3c: A composite range-separated hybrid DFT method with a molecule-optimized polarized valence double-ζ basis set. J Chem Phys 2023; 158:014103. [PMID: 36610980 DOI: 10.1063/5.0133026] [Citation(s) in RCA: 20] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
A new composite density functional theory (DFT) method is presented. It is based on ωB97X-V as one of the best-performing density functionals for the GMTKN55 thermochemistry database and completes the family of "3c" methods toward range-separated hybrid DFT. This method is consistently available for all elements up to Rn (Z = 1-86). Its further key ingredients are a polarized valence double-ζ (vDZP) Gaussian basis set, which was fully optimized in molecular DFT calculations, in combination with large-core effective core potentials and a specially adapted D4 dispersion correction. Unlike most existing double-ζ atomic orbital sets, vDZP shows only small basis set superposition errors (BSSEs) and can compete with standard sets of triple-ζ quality. Small residual BSSE effects are efficiently absorbed by the D4 damping scheme, which overall eliminates the need for an explicit treatment or empirical corrections for BSSE. Thorough tests on a variety of thermochemistry benchmark sets show that the new composite method, dubbed ωB97X-3c, is on par with or even outperforms standard hybrid DFT methods in a quadruple-zeta basis set at a small fraction of the computational cost. Particular strengths of this method are the description of non-covalent interactions and barrier heights, for which it is among the best-performing density functionals overall.
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Affiliation(s)
- Marcel Müller
- Mulliken Center for Theoretical Chemistry, Clausius-Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms Universität Bonn, Beringstraße 4, 53115 Bonn, Germany
| | - Andreas Hansen
- Mulliken Center for Theoretical Chemistry, Clausius-Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms Universität Bonn, Beringstraße 4, 53115 Bonn, Germany
| | - Stefan Grimme
- Mulliken Center for Theoretical Chemistry, Clausius-Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms Universität Bonn, Beringstraße 4, 53115 Bonn, Germany
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9
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Wang G, Kincaid B, Zhou H, Annaberdiyev A, Bennett MC, Krogel JT, Mitas L. A new generation of effective core potentials from correlated and spin-orbit calculations: selected heavy elements. J Chem Phys 2022; 157:054101. [DOI: 10.1063/5.0087300] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We introduce new correlation consistent effective core potentials (ccECPs) for the elements I, Te, Bi, Ag, Au, Pd, Ir, Mo, and W with $4d$, $5d$, $6s$ and $6p$ valence spaces. These ccECPs are given as a sum of spin-orbit averaged relativistic effective potential (AREP) and effective spin-orbit (SO) terms. The construction involves several steps with increasing refinements from more simple to fully correlated methods. The optimizations are carried out with objective functions that include weighted many-body atomic spectra, norm-conservation criteria, and spin-orbit splittings. Transferability tests involve molecular binding curves of corresponding hydride and oxide dimers. The constructed ccECPs are systematically better and in a few cases on par with previous effective core potential (ECP) tables on all tested criteria and provide a significant increase in accuracy for valence-only calculations with these elements. Our study confirms the importance of the AREP part in determining the overall quality of the ECP even in the presence of sizable spin-orbit effects. The subsequent quantum Monte Carlo (QMC) calculations point out the importance of accurate trial wave functions which in some cases (mid series transition elements) require treatment well beyond single-reference.
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Affiliation(s)
| | | | - Haihan Zhou
- NC State University, United States of America
| | | | | | - Jaron T. Krogel
- Materials Science and Technology Division, Oak Ridge National Laboratory, United States of America
| | - Lubos Mitas
- North Carolina State University, United States of America
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10
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Sánchez-Férez F, Rius-Bartra JM, Ayllón JA, Calvet T, Font-Bardia M, Pons J. Tuning Photophysical Properties by p-Functional Groups in Zn(II) and Cd(II) Complexes with Piperonylic Acid. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27041365. [PMID: 35209159 PMCID: PMC8876013 DOI: 10.3390/molecules27041365] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Revised: 02/14/2022] [Accepted: 02/15/2022] [Indexed: 11/16/2022]
Abstract
Aggregation between discrete molecules is an essential factor to prevent aggregation-caused quenching (ACQ). Indeed, functional groups capable of generating strong hydrogen bonds are likely to assemble and cause ACQ and photoinduced electron transfer processes. Thus, it is possible to compare absorption and emission properties by incorporating two ligands with a different bias toward intra- and intermolecular interactions that can induce a specific structural arrangement. In parallel, the π electron-donor or electron-withdrawing character of the functional groups could modify the Highest Ocuppied Molecular Orbital (HOMO)–Lowest Unocuppied Molecular Orbital (LUMO) energy gap. Reactions of M(OAc)2·2H2O (M = Zn(II) and Cd(II); OAc = acetate) with 1,3-benzodioxole-5-carboxylic acid (Piperonylic acid, HPip) and 4-acetylpyridine (4-Acpy) or isonicotinamide (Isn) resulted in the formation of four complexes. The elucidation of their crystal structure showed the formation of one paddle-wheel [Zn(μ-Pip)2(4-Acpy)]2 (1); a mixture of one dimer and two monomers [Zn(µ-Pip)(Pip)(Isn)2]2·2[Zn(Pip)2(HPip)(Isn)]·2MeOH (2); and two dimers [Cd(μ-Pip)(Pip)(4-Acpy)2]2 (3) and [Cd(μ-Pip)(Pip)(Isn)2]2·MeOH (4). They exhibit bridged (1, µ2-η1:η1), bridged, chelated and monodentated (2, µ2-η1:η1, µ1-η1:η1 and µ1-η1), or simultaneously bridged and chelated (3 and 4, µ2-η2:η1) coordination modes. Zn(II) centers accommodate coordination numbers 5 and 6, whereas Cd(II) presents coordination number 7. We have related their photophysical properties and fluorescence quantum yields with their geometric variations and interactions supported by TD-DFT calculations.
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Affiliation(s)
- Francisco Sánchez-Férez
- Departament de Química, Universitat Autònoma de Barcelona, 08193 Barcelona, Spain; (F.S.-F.); (J.M.R.-B.); (J.A.A.)
| | - Joaquim Mª Rius-Bartra
- Departament de Química, Universitat Autònoma de Barcelona, 08193 Barcelona, Spain; (F.S.-F.); (J.M.R.-B.); (J.A.A.)
| | - José A. Ayllón
- Departament de Química, Universitat Autònoma de Barcelona, 08193 Barcelona, Spain; (F.S.-F.); (J.M.R.-B.); (J.A.A.)
| | - Teresa Calvet
- Departament de Mineralogia, Petrologia i Geologia Aplicada, Universitat de Barcelona, Martí i Franquès s/n, 08028 Barcelona, Spain;
| | - Mercè Font-Bardia
- Unitat de Difracció de Raig-X, Centres Científics i Tecnològics de la Universitat de Barcelona (CCiTUB), Universitat de Barcelona, Solé i Sabarís, 1-3, 08028 Barcelona, Spain;
| | - Josefina Pons
- Departament de Química, Universitat Autònoma de Barcelona, 08193 Barcelona, Spain; (F.S.-F.); (J.M.R.-B.); (J.A.A.)
- Correspondence: ; Tel.: +34-935812895
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11
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Desmarais JK, Erba A, Flament JP, Kirtman B. Perturbation Theory Treatment of Spin-Orbit Coupling, Part I: Double Perturbation Theory Based on a Single-Reference Initial Approximation. J Chem Theory Comput 2021; 17:4697-4711. [PMID: 34288690 DOI: 10.1021/acs.jctc.1c00343] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We develop a perturbation theory for solving the many-body Dirac equation within a given relativistic effective-core potential approximation. Starting from a scalar-relativistic unrestricted Hartree-Fock (SR UHF) solution, we carry out a double perturbation expansion in terms of spin-orbit coupling (SOC) and the electron fluctuation potential. Computationally convenient energy expressions are derived through fourth order in SOC, second order in the electron fluctuation potential, and a total of third order in the coupling between the two. Illustrative calculations on the halogen series of neutral and singly positive diatomic molecules show that the perturbation expansion is well-converged by taking into account only the leading (nonvanishing) term at each order of the electron fluctuation potential. Our perturbation theory approach provides a computationally attractive alternative to a two-component self-consistent field treatment of SOC. In addition, it includes coupling with the fluctuation potential through third order and can be extended (in principle) to multireference calculations, when necessary for both closed- and open-shell cases, using quasi-degenerate perturbation theory.
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Affiliation(s)
- Jacques K Desmarais
- Dipartimento di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy.,IPREM, E2S UPPA, CNRS, Université de Pau et des Pays de l'Adour, 64053 Pau, France
| | - Alessandro Erba
- Dipartimento di Chimica, Università di Torino, via Giuria 5, 10125 Torino, Italy
| | - Jean-Pierre Flament
- UMR 8523-PhLAM-Physique des Lasers, Atomes et Molécules, CNRS, Université de Lille, 59000 Lille, France
| | - Bernard Kirtman
- Department of Chemistry and Biochemistry, University of California, Santa Barbara, Santa Barbara, California 93106, United States
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12
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Sánchez-Férez F, Rius-Bartra JM, Calvet T, Font-Bardia M, Pons J. Steric and Electronic Effects on the Structure and Photophysical Properties of Hg(II) Complexes. Inorg Chem 2021; 60:3851-3870. [PMID: 33629838 PMCID: PMC8483444 DOI: 10.1021/acs.inorgchem.0c03640] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
![]()
Since many factors influence the
coordination around a metal center,
steric and electronic effects of the ligands mainly determine the
connectivity and, thus, the final arrangement. This is emphasized
on Hg(II) centers, which have a zero point stabilization energy and,
thus, a flexible coordination environment. Therefore, the unrestricted
Hg(II) geometry facilitates the predominance of the ligands during
the structural inception. Herein, we synthesized and characterized
a series of six Hg(II) complexes with general formula (Hg(Pip)2(dPy)) (Pip = piperonylate, dPy = 3-phenylpyridine (3-phpy)
(1), 4-phenylpyridine (4-phpy) (2), 2,2′-bipyridine
(2,2′-bipy) (3), 1,10-phenanthroline (1,10-phen)
(4), 2,2′:6′,2′-terpyridine (terpy)
(5), or di(2-picolyl)amine (dpa) (6)). The
elucidation of their crystal structures revealed the arrangement of
three monomers (3, 5, and 6), one dimer (4), and two coordination polymers (1 and 2) depending on the steric requirements
of the dPy and predominance of the ligands. Besides, the study of
their photophysical properties in solution supported by TD-DFT calculations
enabled us to understand their electronic effects and the influence
of the structural arrangement on them. Six Hg(II)
complexes containing 1,3-benzodioxole-5-carboxylic
acid and pyridine derivatives bearing N-, N^N′-, and N^N^N-donor sites have been characterized
and their crystal structure elucidated. Steric crowding defined the
predominance of the linkers in the structural arrangement, varying
from monomers to coordination polymers. Their photophysical properties
were analyzed through experimental and TD-DFT calculations, identifying
the character and regions involved on each electronic transition.
In addition, seclusion of the HOMO from the LUMO defined them as appropriate
to selective band gap tuning.
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Affiliation(s)
- Francisco Sánchez-Férez
- Departament de Química, Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain
| | - Joaquim Ma Rius-Bartra
- Departament de Química, Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain
| | - Teresa Calvet
- Departament de Mineralogia, Petrologia i Geologia Aplicada, Universitat de Barcelona, Martí i Franquès s/n, 08028 Barcelona, Spain
| | - Mercè Font-Bardia
- Unitat de Difracció de Raig-X, Centres Científics i Tecnològics de la Universitat de Barcelona (CCiTUB), Universitat de Barcelona, Solé i Sabarís, 1-3, 08028 Barcelona, Spain
| | - Josefina Pons
- Departament de Química, Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain
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13
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Horiuchi S, Tanaka S, Moon S, Sakuda E, Ito A, Arikawa Y, Umakoshi K. A Heteropolynuclear Pt-Ag System Having Cycloplatinated Rollover Bipyridyl Units. Inorg Chem 2021; 60:1513-1522. [PMID: 33444013 DOI: 10.1021/acs.inorgchem.0c02843] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
The synthesis and photophysical properties of the heteropolynuclear Pt-Ag complex having cyclometalated rollover bipyridine ligands (bpy*) and bridging pyrazolato ligands are reported. The Pt2Ag2 complex was synthesized by two step reactions from a Pt(II) complex precursor having the rollover bpy* ligand, [Pt(bpy*)(dmso)Cl], with 3,5-dimethylpyrazole (Me2pzH) and a subsequent replacement of NH protons in the Me2pzH moieties with the Ag(I) ion. The Pt2Ag2 complex exists as a mixture of U- and Z-shaped isomers in solution, whose structures were clearly determined by single-crystal X-ray structural analyses. NMR studies using the single crystals revealed rapid isomerization of the Pt2Ag2 complexes in solution, although the Pt2Ag2 structures were supported effectively by the multiple metal-metal interactions. Furthermore, the Pt2Ag2 framework can capture a Ag(I) ion during the U-Z isomerization to afford a Pt2Ag3 core with the formation of Pt → Ag dative bonds. The Pt2Ag3 complex showed further aggregation to form a dimer structure in the presence of coordinating solvent via the crystallization process. The formation of Pt → Ag dative bonds significantly changes the emission energy from the Pt2Ag2 complex, while the emission spectra of U- and Z-isomers of Pt2Ag2 complex almost coincide with each other and their emissive properties are very similar. The density functional theory (DFT) and time-dependent DFT (TD-DFT) calculations revealed the effects of additional Ag(I) ion on the photophysical properties of the heteropolynuclear Pt-Ag complexes bearing the rollover bpy* ligands.
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Affiliation(s)
- Shinnosuke Horiuchi
- Division of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, Bunkyo-machi, Nagasaki 852-8521, Japan
| | - Seiya Tanaka
- Division of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, Bunkyo-machi, Nagasaki 852-8521, Japan
| | - Sangjoon Moon
- Division of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, Bunkyo-machi, Nagasaki 852-8521, Japan
| | - Eri Sakuda
- Division of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, Bunkyo-machi, Nagasaki 852-8521, Japan
| | - Akitaka Ito
- Graduate School of Engineering, Kochi University of Technology, 185, Miyanokuchi, Tosayamada, Kami, Kochi 782-1502, Japan
| | - Yasuhiro Arikawa
- Division of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, Bunkyo-machi, Nagasaki 852-8521, Japan
| | - Keisuke Umakoshi
- Division of Chemistry and Materials Science, Graduate School of Engineering, Nagasaki University, Bunkyo-machi, Nagasaki 852-8521, Japan
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14
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Fehér PP, Joó F, Papp G, Purgel M. Hydrogenation of Cinnamaldehyde by Water‐Soluble Ruthenium(II) Phosphine Complexes: A DFT Study on the Selectivity and Viability of
trans
‐Dihydride Pathways. Eur J Inorg Chem 2020. [DOI: 10.1002/ejic.202000933] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Péter Pál Fehér
- Department of Physical Chemistry University of Debrecen Egyetem tér 1 4032 Debrecen Hungary
- Institute of Organic Chemistry Research Centre for Natural Sciences Magyar tudósok körútja 2 1117 Budapest Hungary
| | - Ferenc Joó
- Department of Physical Chemistry University of Debrecen Egyetem tér 1 4032 Debrecen Hungary
- MTA-DE Redox and Homogeneous Catalytic Reaction Mechanisms Research Group University of Debrecen Egyetem tér 1 4032 Debrecen Hungary
| | - Gábor Papp
- Department of Physical Chemistry University of Debrecen Egyetem tér 1 4032 Debrecen Hungary
| | - Mihály Purgel
- Department of Physical Chemistry University of Debrecen Egyetem tér 1 4032 Debrecen Hungary
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15
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Jawiczuk M, Marczyk A, Młodzikowska-Pieńko K, Trzaskowski B. Impact of the Carbene Derivative Charge on the Decomposition Rates of Hoveyda-Grubbs-like Metathesis Catalysts. J Phys Chem A 2020; 124:6158-6167. [PMID: 32639748 PMCID: PMC7460089 DOI: 10.1021/acs.jpca.0c03096] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
![]()
Hoveyda–Grubbs
metathesis catalysts undergo a relatively
fast decomposition in the presence of olefins. Using a computational
density functional theory approach, we show that positively charged
derivatives of N-heterocyclic carbenes have little impact on the degradation/deactivation
rates of such catalysts with respect to neutral carbenes. On the other
hand, the hypothetical anionic Hoveyda–Grubbs-like catalysts
are predicted to less likely undergo degradation in the presence of
the olefin, while being as active as standard, neutral Hoveyda–Grubbs
catalysts.
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Affiliation(s)
- Magdalena Jawiczuk
- Centre of New Technologies, University of Warsaw, Banacha 2c, 02-097 Warszawa, Poland
| | - Anna Marczyk
- Centre of New Technologies, University of Warsaw, Banacha 2c, 02-097 Warszawa, Poland.,Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warszawa, Poland
| | - Katarzyna Młodzikowska-Pieńko
- Centre of New Technologies, University of Warsaw, Banacha 2c, 02-097 Warszawa, Poland.,Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warszawa, Poland
| | - Bartosz Trzaskowski
- Centre of New Technologies, University of Warsaw, Banacha 2c, 02-097 Warszawa, Poland
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16
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Pham CT, Roca Jungfer M, Abram U. Indium(iii) {2}-metallacryptates assembled from 2,6-dipicolinoyl-bis(N,N-diethylthiourea). NEW J CHEM 2020. [DOI: 10.1039/c9nj06420f] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
{2}-Metallacryptates are constructed from the self-assembly of 2,6-dipicolinoylbis(N,N-diethylthiourea) ligands and mixtures of indium(iii) chloride and chlorides of monovalent cations.
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Affiliation(s)
- Chien Thang Pham
- VNU University of Science
- Vietnam National University
- Hanoi
- Department of Inorganic Chemistry
- 19 Le Thanh Tong
| | - Maximilian Roca Jungfer
- Institute of Chemistry and Biochemistry
- Freie Universität Berlin
- Fabeckstr. 34/36
- 14195 Berlin
- Germany
| | - Ulrich Abram
- Institute of Chemistry and Biochemistry
- Freie Universität Berlin
- Fabeckstr. 34/36
- 14195 Berlin
- Germany
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17
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Michalski M, Gordon AJ, Berski S. The nature of the T=T double bond (T = B, Al, Ga, In) in dialumene and its derivatives: topological study of the electron localization function (ELF). J Mol Model 2019; 25:211. [PMID: 31273474 PMCID: PMC7406486 DOI: 10.1007/s00894-019-4075-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2019] [Accepted: 05/27/2019] [Indexed: 11/26/2022]
Abstract
The local electronic structure of the Al=Al bond was studied in dialumene and derivatives of dialumene in which the Al atoms were substituted by B, Ga, or In atoms. DFT calculations were performed using the B3LYP, B3PW91, PBE0, M06-L, and M06-2X functionals. Topological analysis of the electron localization function described the covalent bonds mentioned above using the disynaptic basins Vi=1,2(B,B), Vi=1,2(Al,Al), V(Ga,Ga), and Vi=1,2(In,In). The basin populations were smaller than 4 e, as expected for a double bond: B=B 2.97 e, Al=Al 3.44–3.5 e, Ga=Ga 3.58 e, and In=In 3.86 e. The Al=Al, Ga=Ga, and In=In bonds were found to be intermediate in character between single and double bonds. Topological analysis of the ρ(r) field for dialumene showed a non-nuclear attractor along the Al=Al bond, with a pseudoatom basin population of 0.937 e. NBO analysis suggested that a double bond occurred only in the molecules containing Al, Ga, or In atoms. The character of the Ga=Ga bond was observed to be strongly dependent on the effective core potential used in the calculations.
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Affiliation(s)
- Michal Michalski
- Faculty of Chemistry, University of Wroclaw, 14 F. Joliot-Curie, 54-210, Wroclaw, Poland
| | - Agnieszka J Gordon
- Faculty of Chemistry, University of Wroclaw, 14 F. Joliot-Curie, 54-210, Wroclaw, Poland
| | - Slawomir Berski
- Faculty of Chemistry, University of Wroclaw, 14 F. Joliot-Curie, 54-210, Wroclaw, Poland.
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18
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Koseki S, Matsunaga N, Asada T, Schmidt MW, Gordon MS. Spin–Orbit Coupling Constants in Atoms and Ions of Transition Elements: Comparison of Effective Core Potentials, Model Core Potentials, and All-Electron Methods. J Phys Chem A 2019; 123:2325-2339. [DOI: 10.1021/acs.jpca.8b09218] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Shiro Koseki
- Department of Chemistry, Graduate School of Science, Osaka Prefecture University, 1-1 Gakuen-cho, Sakai, Osaka 599-8531, Japan
- The Research Institute for Molecular Electronic Devices (RIMED), Osaka Prefecture University, 1-1 Gakuen-cho,
Naka-ku, Sakai 599-8531, Japan
| | - Nikita Matsunaga
- Department of Chemistry & Biochemistry, Long Island University, Brooklyn, New York 11201, United States
| | - Toshio Asada
- Department of Chemistry, Graduate School of Science, Osaka Prefecture University, 1-1 Gakuen-cho, Sakai, Osaka 599-8531, Japan
- The Research Institute for Molecular Electronic Devices (RIMED), Osaka Prefecture University, 1-1 Gakuen-cho,
Naka-ku, Sakai 599-8531, Japan
| | - Michael W. Schmidt
- Department of Chemistry, Iowa State University and Ames Laboratory-USDOE, Ames, Iowa 50011, United States
| | - Mark S. Gordon
- Department of Chemistry, Iowa State University and Ames Laboratory-USDOE, Ames, Iowa 50011, United States
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19
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Persaud RR, Chen M, Peterson KA, Dixon DA. Potential Energy Surface of Group 11 Trimers (Cu, Ag, Au): Bond Angle Isomerism in Au 3. J Phys Chem A 2019; 123:1198-1207. [PMID: 30652859 DOI: 10.1021/acs.jpca.8b11219] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Potential energy surfaces for the group 11 trimers were generated at various levels of coupled-cluster theory to examine the effects of Jahn-Teller distortions. Our calculations show that the lowest-energy conformer for Cu3, Ag3, and Au3 is the 2B2 (∼65° isomer) without spin-orbit corrections. Spin-orbit corrections have negligible contributions to the relative energies for the angle dependence of the potential energy surfaces for Cu3 and Ag3. The inclusion of spin-orbit corrections for Au3 makes the 2B2 (∼65°) and 2A1 (∼55°) states approximately degenerate. A novel 2B2 isomer of Au3 at an obtuse angle of ∼125° was also characterized, providing evidence for bond angle isomerism on the same 2B2 potential energy surface. Spin-orbit corrections increase the barrier height between the 2B2 (65°) and 2B2 (125°) bond angle isomers of Au3. The calculated symmetric stretch vibrational frequencies are in good agreement with the available experimental values. All frequencies calculated for the Au3 2B2 (∼125°) state are real, and there is at least one bound bending vibration for this state. Jahn-Teller parameters are also derived for each trimer.
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Affiliation(s)
- Rudradatt R Persaud
- Department of Chemistry , The University of Alabama , Shelby Hall , Tuscaloosa , Alabama 35487-0336 , United States
| | - Mingyang Chen
- Beijing Computational Science Research Center , Beijing , 100193 , China
| | - Kirk A Peterson
- Department of Chemistry , Washington State University , Pullman , Washington 99164-4630 , United States
| | - David A Dixon
- Department of Chemistry , The University of Alabama , Shelby Hall , Tuscaloosa , Alabama 35487-0336 , United States
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20
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Elambalassery JG, Sreedevi S. Qualitative and Quantitative Study on Internal Rotation During Tautomerization of Thione, Selenone, and Tellurone. J STRUCT CHEM+ 2018. [DOI: 10.1134/s0022476618070041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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21
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Pakdel S, Pourfath M, Palacios JJ. An implementation of spin-orbit coupling for band structure calculations with Gaussian basis sets: Two-dimensional topological crystals of Sb and Bi. BEILSTEIN JOURNAL OF NANOTECHNOLOGY 2018; 9:1015-1023. [PMID: 29719753 PMCID: PMC5905249 DOI: 10.3762/bjnano.9.94] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/14/2017] [Accepted: 02/28/2018] [Indexed: 06/08/2023]
Abstract
We present an implementation of spin-orbit coupling (SOC) for density functional theory band structure calculations that makes use of Gaussian basis sets. It is based on the explicit evaluation of SOC matrix elements, both the radial and angular parts. For all-electron basis sets, where the full nodal structure is present in the basis elements, the results are in good agreement with well-established implementations such as VASP. For more practical pseudopotential basis sets, which lack nodal structure, an ad-hoc increase of the effective nuclear potential helps to capture all relevant band structure variations induced by SOC. In this work, the non-relativistic or scalar-relativistic Kohn-Sham Hamiltonian is obtained from the CRYSTAL code and the SOC term is added a posteriori. As an example, we apply this method to the Bi(111) monolayer, a paradigmatic 2D topological insulator, and to mono- and multilayer Sb(111) (also known as antimonene), the former being a trivial semiconductor and the latter a topological semimetal featuring topologically protected surface states.
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Affiliation(s)
- Sahar Pakdel
- School of Electrical and Computer Engineering, University College of Engineering, University of Tehran, Tehran 14395-515, Iran
- Departamento de Física de la Materia Condensada, Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Mahdi Pourfath
- School of Electrical and Computer Engineering, University College of Engineering, University of Tehran, Tehran 14395-515, Iran
- School of Nano Science, Institute for Research in Fundamental Sciences (IPM), Tehran 19395-5531, Iran
- Institute for Microelectronics, TU Wien, Gusshausstrasse 27–29/E360, 1040 Vienna, Austria
| | - J J Palacios
- Departamento de Física de la Materia Condensada, Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Instituto Nicolás Cabrera (INC), and Condensed Matter Physics Institute (IFIMAC), Universidad Autónoma de Madrid, 28049 Madrid, Spain
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22
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McKenzie SC, Epifanovsky E, Barca GMJ, Gilbert ATB, Gill PMW. Efficient Method for Calculating Effective Core Potential Integrals. J Phys Chem A 2018; 122:3066-3075. [PMID: 29465999 DOI: 10.1021/acs.jpca.7b12679] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Effective core potential (ECP) integrals are among the most difficult one-electron integrals to calculate due to the projection operators. The radial part of these operators may include r0, r-1, and r-2 terms. For the r0 terms, we exploit a simple analytic expression for the fundamental projected integral to derive new recurrence relations and upper bounds for ECP integrals. For the r-1 and r-2 terms, we present a reconstruction method that replaces these terms by a sum of r0 terms and show that the resulting errors are chemically insignificant for a range of molecular properties. The new algorithm is available in Q-Chem 5.0 and is significantly faster than the ECP implementations in Q-Chem 4.4, GAMESS (US) and Dalton 2016.
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Affiliation(s)
- Simon C McKenzie
- Research School of Chemistry , Australian National University , Canberra , Australian Capital Territory 2601 , Australia
| | - Evgeny Epifanovsky
- Q-Chem Inc. , 6601 Owens Drive , Pleasanton , California 94588 , United States
| | - Giuseppe M J Barca
- Research School of Chemistry , Australian National University , Canberra , Australian Capital Territory 2601 , Australia
| | - Andrew T B Gilbert
- Research School of Chemistry , Australian National University , Canberra , Australian Capital Territory 2601 , Australia
| | - Peter M W Gill
- Research School of Chemistry , Australian National University , Canberra , Australian Capital Territory 2601 , Australia
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23
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Alekseyev AB, Liebermann HP, Vázquez GJ, Lefebvre-Brion H. Coupled-channel study of the Rydberg–valence interaction in HBr. J Chem Phys 2018; 148:084302. [DOI: 10.1063/1.5018167] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- A. B. Alekseyev
- Fakultät für Mathematik und Naturwissenschaften, Physikalische und Theoretische Chemie, Bergische Universität Wuppertal, Gaußstraße 20, D-42097 Wuppertal, Germany
| | - H.-P. Liebermann
- Fakultät für Mathematik und Naturwissenschaften, Physikalische und Theoretische Chemie, Bergische Universität Wuppertal, Gaußstraße 20, D-42097 Wuppertal, Germany
| | - G. J. Vázquez
- Instituto de Ciencias Físicas, Universidad Nacional Autónoma de México (UNAM), 62210 Cuernavaca, Mexico
| | - H. Lefebvre-Brion
- Institut des Sciences Moléculaires d’Orsay (ISMO), CNRS, Université Paris-Saclay, 91405 Orsay Cedex, France
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24
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Zhang B, Vandezande JE, Reynolds RD, Schaefer HF. Spin–Orbit Coupling via Four-Component Multireference Methods: Benchmarking on p-Block Elements and Tentative Recommendations. J Chem Theory Comput 2018; 14:1235-1246. [DOI: 10.1021/acs.jctc.7b00989] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Boyi Zhang
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, United States
| | - Jonathon E. Vandezande
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, United States
| | - Ryan D. Reynolds
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Henry F. Schaefer
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, United States
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25
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Evarestov RA, Bandura AV, Porsev VV, Kovalenko AV. First-principles modeling of hafnia-based nanotubes. J Comput Chem 2017; 38:2088-2099. [PMID: 28618024 DOI: 10.1002/jcc.24849] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2017] [Revised: 05/06/2017] [Accepted: 05/11/2017] [Indexed: 01/29/2023]
Abstract
Hybrid density functional theory calculations were performed for the first time on structure, stability, phonon frequencies, and thermodynamic functions of hafnia-based single-wall nanotubes. The nanotubes were rolled up from the thin free layers of cubic and tetragonal phases of HfO2 . It was shown that the most stable HfO2 single-wall nanotubes can be obtained from hexagonal (111) layer of the cubic phase. Phonon frequencies have been calculated for different HfO2 nanolayers and nanotubes to prove the local stability and to find the thermal contributions to their thermodynamic functions. The role of phonons in stability of nanotubes seems to be negligible for the internal energy and noticeable for the Helmholtz free energy. Zone folding approach has been applied to estimate the connection between phonon modes of the layer and nanotubes and to approximate the nanotube thermodynamic properties. It is found that the zone-folding approximation is sufficiently accurate for heat capacity, but less accurate for entropy. The comparison has been done between the properties of TiO2 , ZrO2 , and HfO2 . © 2017 Wiley Periodicals, Inc.
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Affiliation(s)
- Robert A Evarestov
- Quantum Chemistry Department, Saint Petersburg State University, 7/9 Universitetskaya Naberezhnaya, St. Petersburg, 199034, Russian Federation
| | - Andrei V Bandura
- Quantum Chemistry Department, Saint Petersburg State University, 7/9 Universitetskaya Naberezhnaya, St. Petersburg, 199034, Russian Federation
| | - Vitaly V Porsev
- Quantum Chemistry Department, Saint Petersburg State University, 7/9 Universitetskaya Naberezhnaya, St. Petersburg, 199034, Russian Federation
| | - Alexey V Kovalenko
- Quantum Chemistry Department, Saint Petersburg State University, 7/9 Universitetskaya Naberezhnaya, St. Petersburg, 199034, Russian Federation
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26
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Urbańczyk T, Strojecki M, Krośnicki M, Kędziorski A, Żuchowski PS, Koperski J. Interatomic potentials of metal dimers: probing agreement between experiment and advancedab initiocalculations for van der Waals dimer Cd2. INT REV PHYS CHEM 2017. [DOI: 10.1080/0144235x.2017.1337371] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- T. Urbańczyk
- Faculty of Physics, Astronomy and Applied Computer Science, Smoluchowski Institute of Physics, Jagiellonian University, Kraków, Poland
| | - M. Strojecki
- Jerzy Haber Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences, Kraków, Poland
| | - M. Krośnicki
- Faculty of Mathematics, Physics and Informatics, Institute of Theoretical Physics and Astrophysics, University of Gdansk, Gdańsk, Poland
| | - A. Kędziorski
- Faculty of Physics, Astronomy and Informatics, Institute of Physics, Nicolaus Copernicus University, Toruń, Poland
| | - P. S. Żuchowski
- Faculty of Physics, Astronomy and Informatics, Institute of Physics, Nicolaus Copernicus University, Toruń, Poland
| | - J. Koperski
- Faculty of Physics, Astronomy and Applied Computer Science, Smoluchowski Institute of Physics, Jagiellonian University, Kraków, Poland
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27
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Foglia NO, Morzan UN, Estrin DA, Scherlis DA, Gonzalez Lebrero MC. Role of Core Electrons in Quantum Dynamics Using TDDFT. J Chem Theory Comput 2016; 13:77-85. [DOI: 10.1021/acs.jctc.6b00771] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Nicolás O. Foglia
- Departamento de Química
Inorgánica, Analítica y Química Física/INQUIMAE-CONICET,
Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pab. II, Buenos Aires C1428EHA, Argentina
| | - Uriel N. Morzan
- Departamento de Química
Inorgánica, Analítica y Química Física/INQUIMAE-CONICET,
Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pab. II, Buenos Aires C1428EHA, Argentina
| | - Dario A. Estrin
- Departamento de Química
Inorgánica, Analítica y Química Física/INQUIMAE-CONICET,
Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pab. II, Buenos Aires C1428EHA, Argentina
| | - Damian A. Scherlis
- Departamento de Química
Inorgánica, Analítica y Química Física/INQUIMAE-CONICET,
Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pab. II, Buenos Aires C1428EHA, Argentina
| | - Mariano C. Gonzalez Lebrero
- Departamento de Química
Inorgánica, Analítica y Química Física/INQUIMAE-CONICET,
Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pab. II, Buenos Aires C1428EHA, Argentina
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Khanniche S, Louis F, Cantrel L, Černušák I. A theoretical study of the microhydration of iodic acid (HOIO2). COMPUT THEOR CHEM 2016. [DOI: 10.1016/j.comptc.2016.09.010] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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30
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Evarestov RA, Kitaev YE. New insight on cubic–tetragonal–monoclinic phase transitions in ZrO2: ab initio study and symmetry analysis. J Appl Crystallogr 2016. [DOI: 10.1107/s1600576716011547] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
A group-theory analysis of temperature-induced phase transitions in ZrO2 has been performed in the framework of the group–subgroup relationship tree (Bärnighausen tree) with the computer tools of the Bilbao Crystallographic Server. The transition paths including symmetry-allowed intermediate phases have been established. The active irreducible representations corresponding to soft phonon modes and spontaneous deformation strains responsible for the phase transitions have been determined. The phonon mode frequencies at the symmetry points of the Brillouin zones of cubic, tetragonal and monoclinic phases have been calculated using the ab initio density functional theory method. As a result, the soft modes and their symmetries have been revealed, which are in a complete agreement with the group-theoretical predictions.
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31
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Chen W, Chen GH, Wu D, Wang Q. BNg3F3: the first three noble gas atoms inserted into mono-centric neutral compounds - a theoretical study. Phys Chem Chem Phys 2016; 18:17534-45. [PMID: 27301893 DOI: 10.1039/c6cp01432a] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Following the study of HXeOXeH and HXeCCXeH, in which two Xe atoms were inserted into H2O and C2H2 theoretically and experimentally, the structures and stability of BNg3F3 (Ng = Ar, Kr and Xe), in which three Ng atoms are inserted into BF3, have been explored theoretically using DFT and ab initio calculations. It is shown that BNg3F3 (Ng = Ar, Kr and Xe) with D3h symmetry are local minima with short B-Ng bond lengths of 1.966, 2.027 and 2.214 Å at the CCSD(T)/aug-cc-pVTZ/LJ18 level, which are close to their covalent limits. Note that although BNg3F3 (Ng = Kr and Xe) are energetically higher than the dissociation products 3Ng + BF3, they are still kinetically stable as metastable species with protecting barriers of 13.38 and 17.99 kcal mol(-1) for BKr3F3 and BXe3F3. Moreover, BKr3F3, the tri-Kr-inserted compound, even has comparable kinetic stability to HXeOXeH and HXeOXeF. In addition, upon the formation of BNg3F3, there is a large amount of charge transferred from B to Ng of at least 0.619 e. The calculated Wiberg Bond Indices (WBI) suggest that B-Ng bonds are naturally singly bonded; the large vibrational frequencies of B-Ng and Ng-F stretching modes and the negative Laplacian electron density of B-Ng bonds confirm further that BNg3F3 are stiff molecules with covalent B-Ng bonds. It should be noted that three Ng atoms inserted into mono-centric neutral molecules have not been reported previously. We hope that the present theoretical study may provide important evidence for the experimental synthesis of BNg3F3.
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Affiliation(s)
- Wei Chen
- Department of Chemistry, Shantou University, Shantou 515063, China.
| | - Guang-Hui Chen
- Department of Chemistry, Shantou University, Shantou 515063, China.
| | - Di Wu
- Institute of Theoretical Chemistry, Jilin University, Changchun 130023, China
| | - Qiang Wang
- Department of Applied Chemistry, College of Science, Nanjing Tech University, Nanjing 211816, China
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32
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Cohen A, Gerber RB. A Noble-Gas Hydride in a Nitrogen Medium: Structure, Spectroscopy, and Intermolecular Vibrations of HXeBr@(N2)22. J Phys Chem A 2016; 120:3372-9. [PMID: 27018537 DOI: 10.1021/acs.jpca.6b01476] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Noble-gas hydrides have been extensively studied in noble gas matrices. However, little is known on their stability and properties in molecular hosts. Here, HXeBr in the N2 environment is modeled at the B3LYP-D level of theory in a complete single shell of 22 N2 molecules. The system is compared to similar models of HXeBr in CO2 and Xe clusters. The optimized structure of (HXeBr)@(N2)22 is of low symmetry and is highly anisotropic. None of the N2 molecules are freely rotating, and the host molecules are not symmetrically positioned with respect to the HXeBr axis. The axes of the N2 molecules are nonuniformly distributed. The computed anharmonic H-Xe stretching frequency of HXeBr in the N2 cluster is in good accord with the experimental value. The soft-mode frequencies of the cluster including both intermolecular vibrations and librations, have a broad distribution that ranges from 8.7 to 107 cm(-1). It is expected that these findings and specifically, the single-shell model, may shed light also on the local structure and vibrations of other impurities in a molecular media.
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Affiliation(s)
- Arik Cohen
- Institute of Chemistry and The Fritz Haber Center for Molecular Dynamics, The Hebrew University , Jerusalem 91904, Israel
| | - Robert Benny Gerber
- Institute of Chemistry and The Fritz Haber Center for Molecular Dynamics, The Hebrew University , Jerusalem 91904, Israel.,Department of Chemistry, University of Helsinki , P.O. Box 55, Helsinki, FIN-00014, Finland.,Department of Chemistry, University of California , Irvine, California 92697, United States
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33
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Effects of spin–orbit coupling on the electronic states and spectroscopic properties of tellurium monoxide molecule – A theoretical study. COMPUT THEOR CHEM 2016. [DOI: 10.1016/j.comptc.2016.03.026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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34
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Cui ZH, Attah IK, Platt SP, Aziz SG, Kertesz M, El-Shall M. Xe-bearing hydrocarbon ions: Observation of Xe.acetylene+ and Xe.benzene+ radical cations and calculations of their ground state structures. Chem Phys Lett 2016. [DOI: 10.1016/j.cplett.2016.02.020] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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35
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Gálvez Ó, Baeza-Romero MT, Sanz M, Pacios LF. A theoretical study on the reaction of ozone with aqueous iodide. Phys Chem Chem Phys 2016; 18:7651-60. [PMID: 26906609 DOI: 10.1039/c5cp06440f] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Atmospheric iodine chemistry plays a key role in tropospheric ozone catalytic destruction, new particle formation, and as one of the possible sinks of gaseous polar elemental mercury. Moreover, it has been recently proposed that reaction of ozone with iodide on the sea surface could be the major contributor to the chemical loss of atmospheric ozone. However, the mechanism of the reaction between aqueous iodide and ozone is not well known. The aim of this paper is to improve the understanding of such a mechanism. In this paper, an ab initio study of the reaction of aqueous iodide and ozone is presented, evaluating thermodynamic data of the different reactions proposed in previous experimental studies. In addition, the structures, energetics and possible evolution of the key IOOO(-) intermediate are discussed for the first time.
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Affiliation(s)
- Óscar Gálvez
- Departamento de Física Molecular, Instituto de Estructura de la Materia, IEM-CSIC, 28006 Madrid, Spain.
| | - M Teresa Baeza-Romero
- Escuela de Ingeniería Industrial, Universidad de Castilla-La Mancha, 45071, Toledo, Spain
| | - Mikel Sanz
- Escuela de Ingeniería Industrial, Universidad de Castilla-La Mancha, 45071, Toledo, Spain
| | - Luis F Pacios
- Unidad de Química, Departamento de Sistemas y Recursos Naturales, E.T.S.I. Montes, Universidad Politécnica de Madrid, 28040 Madrid, Spain
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36
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Wolke CT, Fournier JA, Miliordos E, Kathmann SM, Xantheas SS, Johnson MA. Isotopomer-selective spectra of a single intact H2O molecule in the Cs+(D2O)5H2O isotopologue: Going beyond pattern recognition to harvest the structural information encoded in vibrational spectra. J Chem Phys 2016; 144:074305. [DOI: 10.1063/1.4941285] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Conrad T. Wolke
- Sterling Chemistry Laboratory, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, USA
| | - Joseph A. Fournier
- Sterling Chemistry Laboratory, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, USA
| | - Evangelos Miliordos
- Physical Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, Richland, Washington 99352, USA
| | - Shawn M. Kathmann
- Physical Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, Richland, Washington 99352, USA
| | - Sotiris S. Xantheas
- Physical Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, Richland, Washington 99352, USA
| | - Mark A. Johnson
- Sterling Chemistry Laboratory, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, USA
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37
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Sibaev M, Crittenden DL. Quadratic Corrections to Harmonic Vibrational Frequencies Outperform Linear Models. J Phys Chem A 2015; 119:13107-12. [DOI: 10.1021/acs.jpca.5b11386] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Marat Sibaev
- Department of Chemistry, University of Canterbury, Christchurch, New Zealand
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38
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Usui K, Ando M, Yokogawa D, Irle S. Understanding the On–Off Switching Mechanism in Cationic Tetravalent Group-V-Based Fluoride Molecular Sensors Using Orbital Analysis. J Phys Chem A 2015; 119:12693-8. [DOI: 10.1021/acs.jpca.5b09709] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Kosuke Usui
- Department
of Chemistry, Graduate School of Science, Nagoya University, Nagoya 464-8602, Japan
| | - Mikinori Ando
- Department
of Chemistry, Graduate School of Science, Nagoya University, Nagoya 464-8602, Japan
| | - Daisuke Yokogawa
- Department
of Chemistry, Graduate School of Science, Nagoya University, Nagoya 464-8602, Japan
- Institute
of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Nagoya 464-8602, Japan
| | - Stephan Irle
- Department
of Chemistry, Graduate School of Science, Nagoya University, Nagoya 464-8602, Japan
- Institute
of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Nagoya 464-8602, Japan
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39
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Soini TM, Rösch N. Size-dependent properties of transition metal clusters: from molecules to crystals and surfaces--computational studies with the program ParaGauss. Phys Chem Chem Phys 2015; 17:28463-83. [PMID: 26456800 DOI: 10.1039/c5cp04281j] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
In the so-called scalable regime the size-dependent behavior of the physical and chemical properties of transition metal clusters is described by scaling relationships. For most quantities this scalable regime is reached for cluster sizes between a few tens and a few hundreds of atoms, hence for systems for which an accurate treatment by density functional theory is still feasible. Thus, by invoking scaling relations one is able to obtain properties of very large nanoparticles and even the bulk limit from the results of a series of smaller cluster models. In this invited review we illustrate this strategy by exploiting results from computational studies that mostly were carried out with the density functional theory software ParaGauss. We address mainly the size-dependent behavior of the properties of transition metal clusters. To this end, we first present benchmark studies probing various approximations that are used in such density functional calculations. Subsequently we show how physical insight may be gained by exploring less understood types of systems. These applications range from bare clusters to nanoislands and nanoalloys to adsorption complexes.
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Affiliation(s)
- Thomas M Soini
- Department Chemie and Catalysis Research Center, Technische Universität München, 85747 Garching, Germany.
| | - Notker Rösch
- Department Chemie and Catalysis Research Center, Technische Universität München, 85747 Garching, Germany. and Institute of High Performance Computing, Agency for Science, Technology and Research, 1 Fusionopolis Way, Connexis #16-16, Singapore 138632, Singapore
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40
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Bandura AV, Porsev VV, Evarestov RA. Application of zone-folding approach to the first-principles estimation of thermodynamic properties of carbon and ZrS2-based nanotubes. J Comput Chem 2015; 37:641-52. [DOI: 10.1002/jcc.24243] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2015] [Revised: 10/15/2015] [Accepted: 10/17/2015] [Indexed: 11/11/2022]
Affiliation(s)
- Andrei V. Bandura
- Quantum Chemistry Department; Saint-Petersburg State University, 7/9 Universitetskaya nab.; St. Petersburg 199034 Russia
| | - Vitaly V. Porsev
- Quantum Chemistry Department; Saint-Petersburg State University, 7/9 Universitetskaya nab.; St. Petersburg 199034 Russia
| | - Robert A. Evarestov
- Quantum Chemistry Department; Saint-Petersburg State University, 7/9 Universitetskaya nab.; St. Petersburg 199034 Russia
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41
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Jiao Y, Dibble TS. Quality Structures, Vibrational Frequencies, and Thermochemistry of the Products of Reaction of BrHg• with NO2, HO2, ClO, BrO, and IO. J Phys Chem A 2015; 119:10502-10. [DOI: 10.1021/acs.jpca.5b04889] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yuge Jiao
- Department of Chemistry,
College of Environmental Science and Forestry, State University of New York, Syracuse, New York 13210, United States
| | - Theodore S. Dibble
- Department of Chemistry,
College of Environmental Science and Forestry, State University of New York, Syracuse, New York 13210, United States
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42
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Three-dimensional reference interaction site model solvent combined with a quantum mechanical treatment of the solute. COMPUT THEOR CHEM 2015. [DOI: 10.1016/j.comptc.2015.08.003] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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43
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Steele RP. Multiple-Timestep ab Initio Molecular Dynamics Using an Atomic Basis Set Partitioning. J Phys Chem A 2015; 119:12119-30. [DOI: 10.1021/acs.jpca.5b05850] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ryan P. Steele
- Department of Chemistry and
Henry Eyring Center for Theoretical Chemistry, University of Utah, 315 South 1400 East, Salt Lake City, Utah 84112, United States
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44
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Matsuoka T, Yabushita S. Quantum Interference Effects Theoretically Found in the Photodissociation Processes of the Second Absorption Bands of ICl and IBr Molecules. J Phys Chem A 2015; 119:9609-20. [DOI: 10.1021/acs.jpca.5b05146] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Takahide Matsuoka
- Department of Chemistry,
Faculty of Science and Technology, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokohama 223-8522, Japan
| | - Satoshi Yabushita
- Department of Chemistry,
Faculty of Science and Technology, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokohama 223-8522, Japan
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45
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Bandura AV, Kuruch DD, Evarestov RA. Quantum Chemical Study of Water Adsorption on the Surfaces of SrTiO 3Nanotubes. Chemphyschem 2015; 16:2192-8. [DOI: 10.1002/cphc.201500267] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2015] [Indexed: 11/06/2022]
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46
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Palmer MH, Ridley T, Hoffmann SV, Jones NC, Coreno M, de Simone M, Grazioli C, Biczysko M, Baiardi A, Limão-Vieira P. Interpretation of the vacuum ultraviolet photoabsorption spectrum of iodobenzene by ab initio computations. J Chem Phys 2015; 142:134302. [PMID: 25854238 DOI: 10.1063/1.4916121] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Identification of many Rydberg states in iodobenzene, especially from the first and fourth ionization energies (IE1 and IE4, X(2)B1 and C(2)B1), has become possible using a new ultraviolet (UV) and vacuum-ultraviolet (VUV) absorption spectrum, in the region 29 000-87 000 cm(-1) (3.60-10.79 eV), measured at room temperature with synchrotron radiation. A few Rydberg states based on IE2 (A(2)A2) were found, but those based on IE3 (B(2)B2) are undetectable. The almost complete absence of observable Rydberg states relating to IE2 and IE3 (A(2)A2 and B(2)B2, respectively) is attributed to them being coupled to the near-continuum, high-energy region of Rydberg series converging on IE1. Theoretical studies of the UV and VUV spectra used both time-dependent density functional (TDDFT) and multi-reference multi-root doubles and singles-configuration interaction methods. The theoretical adiabatic excitation energies, and their corresponding vibrational profiles, gave a satisfactory interpretation of the experimental results. The calculations indicate that the UV onset contains both 1(1)B1 and 1(1)B2 states with very low oscillator strength, while the 2(1)B1 state was found to lie under the lowest ππ(∗) 1(1)A1 state. All three of these (1)B1 and (1)B2 states are excitations into low-lying σ(∗) orbitals. The strongest VUV band near 7 eV contains two very strong ππ(∗) valence states, together with other weak contributors. The lowest Rydberg 4b16s state (3(1)B1) is very evident as a sharp multiplet near 6 eV; its position and vibrational structure are well reproduced by the TDDFT results.
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Affiliation(s)
- Michael H Palmer
- School of Chemistry, University of Edinburgh, Joseph Black Building, David Brewster Road, Edinburgh EH9 3FJ, Scotland, United Kingdom
| | - Trevor Ridley
- School of Chemistry, University of Edinburgh, Joseph Black Building, David Brewster Road, Edinburgh EH9 3FJ, Scotland, United Kingdom
| | - Søren Vrønning Hoffmann
- Department of Physics and Astronomy, ISA, Aarhus University, Ny Munkegade 120, DK-8000 Aarhus C, Denmark
| | - Nykola C Jones
- Department of Physics and Astronomy, ISA, Aarhus University, Ny Munkegade 120, DK-8000 Aarhus C, Denmark
| | - Marcello Coreno
- CNR-ISM, Montelibretti, c/o Laboratorio Elettra, Trieste, Italy
| | | | | | - Malgorzata Biczysko
- National Research Council ICCOM-CNR, UOS di Pisa, Via G. Moruzzi 1, I-56124 Pisa, Italy
| | - Alberto Baiardi
- Scuola Normale Superiore, Piazza Cavalieri 7, 56126 Pisa, Italy
| | - Paulo Limão-Vieira
- Laboratório de Colisões Atómicas e Moleculares, CEFITEC, Departamento de Física, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Caparica, Portugal
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47
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Madison LR, Ratner MA, Schatz GC. Understanding the Electronic Structure Properties of Bare Silver Clusters as Models for Plasmonic Excitation. ACTA ACUST UNITED AC 2015. [DOI: 10.1007/978-3-319-14397-2_3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/22/2023]
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48
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Bandura AV, Evarestov RA, Zhukovskii YF. Energetic stability and photocatalytic activity of SrTiO3 nanowires: ab initio simulations. RSC Adv 2015. [DOI: 10.1039/c5ra00306g] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Ab initio simulations have been performed to describe, for the first time, energetic stability and photocatalytic activity of SrTiO3 nanowires.
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Affiliation(s)
- Andrei V. Bandura
- St. Petersburg State University
- Quantum Chemistry Department
- St. Petersburg
- Russian Federation
| | - Robert A. Evarestov
- St. Petersburg State University
- Quantum Chemistry Department
- St. Petersburg
- Russian Federation
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49
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50
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Pototschnig JV, Krois G, Lackner F, Ernst WE. Ab initio study of the RbSr electronic structure: potential energy curves, transition dipole moments, and permanent electric dipole moments. J Chem Phys 2014; 141:234309. [PMID: 25527937 DOI: 10.1063/1.4903791] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Excited states and the ground state of the diatomic molecule RbSr were calculated by post Hartree-Fock molecular orbital theory up to 22 000 cm(-1). We applied a multireference configuration interaction calculation based on multiconfigurational self-consistent field wave functions. Both methods made use of effective core potentials and core polarization potentials. Potential energy curves, transition dipole moments, and permanent electric dipole moments were determined for RbSr and could be compared with other recent calculations. We found a good agreement with experimental spectra, which have been obtained recently by helium nanodroplet isolation spectroscopy. For the lowest two asymptotes (Rb (5s (2)S) + Sr (5s4d (3)P°) and Rb (5p (2)P°) + Sr (5s(2) (1)S)), which exhibit a significant spin-orbit coupling, we included relativistic effects by two approaches, one applying the Breit-Pauli Hamiltonian to the multireference configuration interaction wave functions, the other combining a spin-orbit Hamiltonian and multireference configuration interaction potential energy curves. Using the results for the relativistic potential energy curves that correspond to the Rb (5s (2)S) + Sr (5s4d (3)P°) asymptote, we have simulated dispersed fluorescence spectra as they were recently measured in our lab. The comparison with experimental data allows to benchmark both methods and demonstrate that spin-orbit coupling has to be included for the lowest states of RbSr.
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Affiliation(s)
- Johann V Pototschnig
- Institute of Experimental Physics, Graz University of Technology, Petersgasse 16, A-8010 Graz, Austria
| | - Günter Krois
- Institute of Experimental Physics, Graz University of Technology, Petersgasse 16, A-8010 Graz, Austria
| | - Florian Lackner
- Institute of Experimental Physics, Graz University of Technology, Petersgasse 16, A-8010 Graz, Austria
| | - Wolfgang E Ernst
- Institute of Experimental Physics, Graz University of Technology, Petersgasse 16, A-8010 Graz, Austria
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