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Tracy DA, Fernandez-Alberti S, Galindo JF, Tretiak S, Roitberg AE. Nonadiabatic Excited-State Molecular Dynamics with an Explicit Solvent: NEXMD-SANDER Implementation. J Phys Chem B 2024. [PMID: 39530349 DOI: 10.1021/acs.jpcb.4c05600] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2024]
Abstract
In this article, the nonadiabatic excited-state Molecular dynamics (NEXMD) package is linked with the SANDER package, provided by AMBERTOOLS. The combination of these software packages enables the simulation of photoinduced dynamics of large multichromophoric conjugated molecules involving several coupled electronic excited states embedded in an explicit solvent by using the quantum/mechanics/molecular mechanics (QM/MM) methodology. The fewest switches surface hopping algorithm, as implemented in NEXMD, is used to account for quantum transitions among the adiabatic excited-state simulations of the photoexcitation and subsequent nonadiabatic electronic transitions, and vibrational energy relaxation of a substituted polyphenylenevinylene oligomer (PPV3-NO2) in vacuum and methanol as an explicit solvent has been used as a test case. The impact of including specific solvent molecules in the QM region is also analyzed. Our NEXMD-SANDER QM/MM implementation provides a useful computational tool to simulate qualitatively solvent-dependent effects, like electron transfer, stabilization of charge-separated excited states, and the role of solvent reorganization in the molecular optical properties, observed in solution-based spectroscopic experiments.
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Affiliation(s)
- Dustin A Tracy
- Department of Chemistry, University of Florida, Gainesville, Florida 32611, United States
| | | | - Johan Fabian Galindo
- Departamento de Química, Universidad Nacional de Colombia, Sede Bogotá, Bogotá 111321, Colombia
| | - Sergei Tretiak
- Theoretical Division, Center for Nonlinear Studies (CNLS) and Center for integrated Nanotechnologies (CINT), Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Adrian E Roitberg
- Department of Chemistry, University of Florida, Gainesville, Florida 32611, United States
- CONICET─Universidad de Buenos Aires, Instituto de Química-Física de los Materiales, Medio Ambiente y Energía (INQUIMAE), Ciudad Universitaria, Pabellón 2, Buenos Aires C1428EHA, Argentina
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2
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Zhu Y, Peng J, Xu C, Lan Z. Unsupervised Machine Learning in the Analysis of Nonadiabatic Molecular Dynamics Simulation. J Phys Chem Lett 2024; 15:9601-9619. [PMID: 39270134 DOI: 10.1021/acs.jpclett.4c01751] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/15/2024]
Abstract
The all-atomic full-dimensional-level simulations of nonadiabatic molecular dynamics (NAMD) in large realistic systems has received high research interest in recent years. However, such NAMD simulations normally generate an enormous amount of time-dependent high-dimensional data, leading to a significant challenge in result analyses. Based on unsupervised machine learning (ML) methods, considerable efforts were devoted to developing novel and easy-to-use analysis tools for the identification of photoinduced reaction channels and the comprehensive understanding of complicated molecular motions in NAMD simulations. Here, we tried to survey recent advances in this field, particularly to focus on how to use unsupervised ML methods to analyze the trajectory-based NAMD simulation results. Our purpose is to offer a comprehensive discussion on several essential components of this analysis protocol, including the selection of ML methods, the construction of molecular descriptors, the establishment of analytical frameworks, their advantages and limitations, and persistent challenges.
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Affiliation(s)
- Yifei Zhu
- MOE Key Laboratory of Environmental Theoretical Chemistry, SCNU Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety, School of Environment, South China Normal University, Guangzhou 510006, P. R. China
| | - Jiawei Peng
- MOE Key Laboratory of Environmental Theoretical Chemistry, SCNU Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety, School of Environment, South China Normal University, Guangzhou 510006, P. R. China
| | - Chao Xu
- MOE Key Laboratory of Environmental Theoretical Chemistry, SCNU Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety, School of Environment, South China Normal University, Guangzhou 510006, P. R. China
| | - Zhenggang Lan
- MOE Key Laboratory of Environmental Theoretical Chemistry, SCNU Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety, School of Environment, South China Normal University, Guangzhou 510006, P. R. China
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3
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Nikoobakht B, Köppel H. Fully quantal description of combined internal conversion and intersystem crossing processes in the smallest Criegee intermediate CH 2OO. Phys Chem Chem Phys 2024; 26:24591-24606. [PMID: 39269221 DOI: 10.1039/d4cp02122c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/15/2024]
Abstract
A quantal description of nuclear motion using coupled fifteen-state potential energy and spin-orbit coupling surfaces for studying the photodissociation of CH2OO to H2CO(X1A1) + O1D and H2CO(X1A1) + O3P channels is presented. For the evaluation of surfaces, multireference electronic wave functions are employed. For the fully quantal description of the nuclear motion, we diabatize the PESs of the two and four lowest excited singlet and triplet states, respectively, within the three sets of vibronically coupled states, i.e. (B1A', C1A'), (a3A', b3A') and (a3A'', b3A''), employing the diabatization by ansatz method. This yields three different adiabatic-to-diabatic mixing angles, which are used for the diabatization of the spin-orbit coupling surfaces and allow to investigate simultaneously the internal conversion and intersystem crossing processes in CH2OO using a nuclear quantum dynamical approach for the first time. Our calculation predicts the presence of a weak spectral band with irregular and discrete structures, which originates from the role of spin-orbit couplings. This band of the spectrum is mainly located between the minimum energy of the a3A' state and the onset of the B1A' ← X1A' spectral band. Furthermore, sizable SOC between the B1A' and a3A'' states mixes them via intersystem crossing. Due to the vibronic interaction between the a3A'' and a3A' states, the molecule finally relaxes to the a3A' state and is dissociated to H2CO(X1A1) and O3P products.
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Affiliation(s)
- Behnam Nikoobakht
- Theoretische Chemie, Physikalisch-Chemisches Institut, Universität Heidelberg, INF 229, D-69120 Heidelberg, Germany.
| | - Horst Köppel
- Theoretische Chemie, Physikalisch-Chemisches Institut, Universität Heidelberg, INF 229, D-69120 Heidelberg, Germany.
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4
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Perez-Castillo R, Freixas VM, Mukamel S, Martinez-Mesa A, Uranga-Piña L, Tretiak S, Gelin MF, Fernandez-Alberti S. Transient-absorption spectroscopy of dendrimers via nonadiabatic excited-state dynamics simulations. Chem Sci 2024; 15:13250-13261. [PMID: 39183915 PMCID: PMC11339953 DOI: 10.1039/d4sc01019a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2024] [Accepted: 07/10/2024] [Indexed: 08/27/2024] Open
Abstract
The efficiency of light-harvesting and energy transfer in multi-chromophore ensembles underpins natural photosynthesis. Dendrimers are highly branched synthetic multi-chromophoric conjugated supra-molecules that mimic these natural processes. After photoexcitation, their repeated units participate in a number of intramolecular electronic energy relaxation and redistribution pathways that ultimately funnel to a sink. Here, a model four-branched dendrimer with a pyrene core is theoretically studied using nonadiabatic molecular dynamics simulations. We evaluate excited-state photoinduced dynamics of the dendrimer, and demonstrate on-the-fly simulations of its transient absorption pump-probe (TA-PP) spectra. We show how the evolutions of the simulated TA-PP spectra monitor in real time photoinduced energy relaxation and redistribution, and provide a detailed microscopic picture of the relevant energy-transfer pathways. To the best of our knowledge, this is the first of this kind of on-the-fly atomistic simulation of TA-PP signals reported for a large molecular system.
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Affiliation(s)
- Royle Perez-Castillo
- Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes/CONICET B1876BXD Bernal Argentina
| | - Victor M Freixas
- Department of Chemistry and Physics and Astronomy, University of California Irvine California 92697-2025 USA
| | - Shaul Mukamel
- Department of Chemistry and Physics and Astronomy, University of California Irvine California 92697-2025 USA
| | - Aliezer Martinez-Mesa
- Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes/CONICET B1876BXD Bernal Argentina
- DynAMoS (Dynamical Processes in Atomic and Molecular Systems), Facultad de Física, Universidad de La Habana San Lázaro y L La Habana 10400 Cuba
| | - Llinersy Uranga-Piña
- Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes/CONICET B1876BXD Bernal Argentina
- DynAMoS (Dynamical Processes in Atomic and Molecular Systems), Facultad de Física, Universidad de La Habana San Lázaro y L La Habana 10400 Cuba
| | - Sergei Tretiak
- Theoretical Division and Center for Integrated Nanotechnologies, Los Alamos National Laboratory Los Alamos New Mexico 87545 USA
| | - Maxim F Gelin
- School of Sciences, Hangzhou Dianzi University Hangzhou 310018 China
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5
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Liu D, Wang B, Vasenko AS, Prezhdo OV. Decoherence ensures convergence of non-adiabatic molecular dynamics with number of states. J Chem Phys 2024; 161:064104. [PMID: 39120030 DOI: 10.1063/5.0222557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2024] [Accepted: 07/24/2024] [Indexed: 08/10/2024] Open
Abstract
Non-adiabatic (NA) molecular dynamics (MD) is a powerful approach for studying far-from-equilibrium quantum dynamics in photophysical and photochemical systems. Most NA-MD methods are developed and tested with few-state models, and their validity with complex systems involving many states is not well studied. By modeling intraband equilibration and interband recombination of charge carriers in MoS2, we investigate the convergence of three popular NA-MD algorithms, fewest switches surface hopping (FSSH), global flux surface hopping (GFSH), and decoherence induced surface hopping (DISH) with the number of states. Only the standard DISH algorithm converges with the number of states and produces Boltzmann equilibrium. Unitary propagation of the wave function in FSSH and GFSH violates the Boltzmann distribution, leads to internal inconsistency between time-dependent Schrödinger equation state populations and trajectory counts, and produces non-convergent results. Introducing decoherence in FSSH and GFSH by collapsing the wave function fixes these problems. The simplified version of DISH that omits projecting out the occupied state and is applicable to few-state systems also causes problems when the number of states is increased. We discuss the algorithmic application of wave function collapse and Boltzmann detailed balance and provide detailed FSSH, GFSH, and DISH flow charts. The use of convergent NA-MD methods is highly important for modeling complicated quantum processes involving multiple states. Our findings provide the basis for investigating quantum dynamics in realistic complex systems.
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Affiliation(s)
| | - Bipeng Wang
- Department of Chemical Engineering, University of Southern California, Los Angeles, California 90089, USA
| | - Andrey S Vasenko
- HSE University, 101000 Moscow, Russia
- Donostia International Physics Center (DIPC), 20018 San Sebastián-Donostia, Euskadi, Spain
| | - Oleg V Prezhdo
- Department of Chemistry, University of Southern California, Los Angeles, California 90089, USA
- Department of Physics and Astronomy, University of Southern California, Los Angeles, California 90089, USA
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6
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Liu S, Peng J, Bao P, Shi Q, Lan Z. Ultrafast Excited-State Energy Transfer in Phenylene Ethynylene Dendrimer: Quantum Dynamics with the Tensor Network Method. J Phys Chem A 2024. [PMID: 39047261 DOI: 10.1021/acs.jpca.4c00322] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/27/2024]
Abstract
Photoinduced excited-state energy transfer (EET) processes play an important role in solar energy conversions. Owing to their excellent photoharvesting and exciton-transport properties, phenylene ethynylene (PE) dendrimers display great potential for improving the efficiency of solar cells. In this work, we investigated the intramolecular EET dynamics in a dendrimer composed of two linear PE units (2-ring and 3-ring) using a fully quantum description based on the tensor network method. We first constructed a diabatic model Hamiltonian based on the electronic structure calculations. Using this diabatic vibronic coupling model, we tried to obtain the main features of the EET dynamics in terms of the several diabatic models with different numbers of vibrational modes (from 4 modes to 129 modes) and to explore the corresponding vibronic coupling interactions. The results show that the EET in this PE dendrimer is ultrafast. Four modes of A' symmetry play dominant roles in the dynamics; the remaining 86 modes of A' symmetry can dampen the electronic coherence; and the modes of A″ symmetry do not exhibit significant influence on the EET process. Overall, the first-order intrastate vibronic coupling terms show the dominant role in the EET dynamics, while the second-order intrastate vibronic coupling terms cause damping of the electronic coherence and slow down the overall EET process. This work provides a microscopic understanding of the EET dynamics in PE dendrimers.
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Affiliation(s)
- Sisi Liu
- SCNU Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety & MOE Key Laboratory of Environmental Theoretical Chemistry, South China Normal University, Guangzhou 510006, China
- School of Environment, South China Normal University, Guangzhou 510006, China
| | - Jiawei Peng
- SCNU Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety & MOE Key Laboratory of Environmental Theoretical Chemistry, South China Normal University, Guangzhou 510006, China
- School of Chemistry, South China Normal University, Guangzhou 510006, China
| | - Peng Bao
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory for Structural Chemistry of Unstable and Stable Species, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing, Zhongguancun 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Qiang Shi
- Beijing National Laboratory for Molecular Sciences, State Key Laboratory for Structural Chemistry of Unstable and Stable Species, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing, Zhongguancun 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhenggang Lan
- SCNU Environmental Research Institute, Guangdong Provincial Key Laboratory of Chemical Pollution and Environmental Safety & MOE Key Laboratory of Environmental Theoretical Chemistry, South China Normal University, Guangzhou 510006, China
- School of Environment, South China Normal University, Guangzhou 510006, China
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7
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Lama B, Sarma M. Ultrafast Hot Exciton Nonadiabatic Excited-State Dynamics in Green Fluorescent Protein Chromophore Analogue. J Phys Chem B 2024; 128:6786-6796. [PMID: 38959128 DOI: 10.1021/acs.jpcb.4c02733] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/05/2024]
Abstract
The ultrafast high-energy nonadiabatic excited-state dynamics of the benzylidenedimethylimidazolinone chromophore dimer has been investigated using an electronic structure method coupled with on-the-fly quantitative wave function analysis to gain insight into the photophysics of hot excitons in biological systems. The dynamical simulation provides a rationalization of the behavior of the exciton in a dimer after the photoabsorption of light to higher-energy states. The results suggest that hot exciton localization within the manifold of excited states is caused by the hindrance of torsional rotation due to imidazolinone (I) or phenolate (P) bonds i.e., ΦI- or ΦP-dihedral rotation, in the monomeric units of a dimer. This hindrance arises due to weak π-π stacking interaction in the dimer, resulting in an energetically uphill excited-state barrier for ΦI- and ΦP-twisted rotation, impeding the isomerization process in the chromophore. Thus, this study highlights the potential impact of the weak π-π interaction in regulating the photodynamics of the green fluorescent protein chromophore derivatives.
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Affiliation(s)
- Bittu Lama
- Department of Chemistry, Indian Institute of Technology, Guwahati, Assam 781039, India
| | - Manabendra Sarma
- Department of Chemistry, Indian Institute of Technology, Guwahati, Assam 781039, India
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8
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Gumber S, Prezhdo OV. Energy-Conserving Surface Hopping for Auger Processes. J Chem Theory Comput 2024; 20:5408-5417. [PMID: 38902855 PMCID: PMC11238531 DOI: 10.1021/acs.jctc.4c00562] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/22/2024]
Abstract
Auger-type processes are ubiquitous in nanoscale materials because quantum confinement enhances Coulomb interactions, and there exist large densities of states. Modeling Auger processes requires the modification of nonadiabatic (NA) molecular dynamics algorithms to include transitions caused by both NA and Coulomb couplings. The system is split into quantum and classical subsystems, e.g., electrons and vibrations, and as a result, energy conservation becomes nontrivial. In surface hopping, an electronic transition induced by NA coupling is accompanied by a classical velocity readjustment to ensure conservation of the total quantum-classical energy. A different treatment is needed for Auger transitions driven by Coulomb interactions. We develop a nonadiabatic molecular dynamics methodology that meticulously differentiates the energy redistribution accompanying hops induced by the NA coupling and the Coulomb interaction and correctly conserves the total energy at each transition. If the transition is driven by a Coulomb interaction, the hop energy is redistributed within the quantum electronic subsystem only. If the transition is NA, the energy is redistributed between the quantum and classical subsystems. Properly maintaining energy conservation for both types of transitions is crucial to generate a correct order of events, obtain accurate transition times, maintain a proper statistical distribution of state populations, and reach thermodynamic equilibrium. We test the method with biexciton annihilation and Auger-assisted hot electron relaxation in a CdSe quantum dot. The sequence of Auger and phonon-driven processes and the calculated time scales are in excellent agreement with the experimental results. The developed approach can be coupled with any surface-hopping method and provides a crucial practical advance to study charge-carrier dynamics in the nanoscale and condensed matter systems.
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Affiliation(s)
- Shriya Gumber
- Department of Chemistry, University of Southern California, Los Angeles, California 90089, United States
| | - Oleg V Prezhdo
- Department of Chemistry, University of Southern California, Los Angeles, California 90089, United States
- Department of Physics and Astronomy, University of Southern California, Los Angeles, California 90089, United States
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9
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Han D, Akimov AV. Nonadiabatic Dynamics with Exact Factorization: Implementation and Assessment. J Chem Theory Comput 2024; 20:5022-5042. [PMID: 38837952 DOI: 10.1021/acs.jctc.4c00343] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2024]
Abstract
In this work, we report our implementation of several independent-trajectory mixed-quantum-classical (ITMQC) nonadiabatic dynamics methods based on exact factorization (XF) in the Libra package for nonadiabatic and excited-state dynamics. Namely, the exact factorization surface hopping (SHXF), mixed quantum-classical dynamics (MQCXF), and mean-field (MFXF) are introduced. Performance of these methods is compared to that of several traditional surface hopping schemes, such as the fewest-switches surface hopping (FSSH), branching-corrected surface hopping (BCSH), and the simplified decay of mixing (SDM), as well as conventional Ehrenfest (mean-field, MF) method. Based on a comprehensive set of 1D model Hamiltonians, we find the ranking SHXF ≈ MQCXF > BCSH > SDM > FSSH ≫ MF, with the BCSH sometimes outperforming the XF methods in terms of describing coherences. Although the MFXF method can yield reasonable populations and coherences for some cases, it does not conserve the total energy and is therefore not recommended. We also find that the branching correction for auxiliary trajectories is important for the XF methods to yield accurate populations and coherences. However, the branching correction can worsen the quality of the energy conservation in the MQCXF. Finally, we find that using the time-dependent Gaussian width approximation used in the XF methods for computing decoherence correction can improve the quality of energy conservation in the MQCXF dynamics. The parameter-free scheme of Subotnik for computing the Gaussian widths is found to deliver the best performance in situations where such widths are not known a priori.
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Affiliation(s)
- Daeho Han
- Department of Chemistry, University at Buffalo, The State University of New York, Buffalo, New York 14260, United States
| | - Alexey V Akimov
- Department of Chemistry, University at Buffalo, The State University of New York, Buffalo, New York 14260, United States
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10
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Zhang Q, Shao X, Li W, Mi W, Pavanello M, Akimov AV. Nonadiabatic molecular dynamics with subsystem density functional theory: application to crystalline pentacene. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2024; 36:385901. [PMID: 38866023 DOI: 10.1088/1361-648x/ad577d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2024] [Accepted: 06/12/2024] [Indexed: 06/14/2024]
Abstract
In this work, we report the development and assessment of the nonadiabatic molecular dynamics approach with the electronic structure calculations based on the linearly scaling subsystem density functional method. The approach is implemented in an open-source embedded Quantum Espresso/Libra software specially designed for nonadiabatic dynamics simulations in extended systems. As proof of the applicability of this method to large condensed-matter systems, we examine the dynamics of nonradiative relaxation of excess excitation energy in pentacene crystals with the simulation supercells containing more than 600 atoms. We find that increased structural disorder observed in larger supercell models induces larger nonadiabatic couplings of electronic states and accelerates the relaxation dynamics of excited states. We conduct a comparative analysis of several quantum-classical trajectory surface hopping schemes, including two new methods proposed in this work (revised decoherence-induced surface hopping and instantaneous decoherence at frustrated hops). Most of the tested schemes suggest fast energy relaxation occurring with the timescales in the 0.7-2.0 ps range, but they significantly overestimate the ground state recovery rates. Only the modified simplified decay of mixing approach yields a notably slower relaxation timescales of 8-14 ps, with a significantly inhibited ground state recovery.
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Affiliation(s)
- Qingxin Zhang
- Department of Chemistry, University at Buffalo, The State University of New York, Buffalo, NY 14260, United States of America
| | - Xuecheng Shao
- Department of Physics, Rutgers University, The State University of New Jersey, Newark, NJ 07102, United States of America
| | - Wei Li
- School of Chemistry and Materials Science, Hunan Agricultural University, Changsha 410128, People's Republic of China
| | - Wenhui Mi
- Key Laboratory of Material Simulation Methods & Software of Ministry of Education, College of Physics, Jilin University, Changchun 130012, People's Republic of China
- State Key Laboratory of Superhard Materials, Jilin University, Changchun 130012, People's Republic of China
| | - Michele Pavanello
- Department of Physics, Rutgers University, The State University of New Jersey, Newark, NJ 07102, United States of America
| | - Alexey V Akimov
- Department of Chemistry, University at Buffalo, The State University of New York, Buffalo, NY 14260, United States of America
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11
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Shu Y, Truhlar DG. Generalized Semiclassical Ehrenfest Method: A Route to Wave Function-Free Photochemistry and Nonadiabatic Dynamics with Only Potential Energies and Gradients. J Chem Theory Comput 2024; 20:4396-4426. [PMID: 38819014 DOI: 10.1021/acs.jctc.4c00424] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/01/2024]
Abstract
We reconsider recent methods by which direct dynamics calculations of electronically nonadiabatic processes can be carried out while requiring only adiabatic potential energies and their gradients. We show that these methods can be understood in terms of a new generalization of the well-known semiclassical Ehrenfest method. This is convenient because it eliminates the need to evaluate electronic wave functions and their matrix elements along the mixed quantum-classical trajectories. The new approximations and procedures enabling this advance are the curvature-driven approximation to the time-derivative coupling, the generalized semiclassical Ehrenfest method, and a new gradient correction scheme called the time-derivative matrix (TDM) scheme. When spin-orbit coupling is present, one can carry out dynamics calculations in the fully adiabatic basis using potential energies and gradients calculated without spin-orbit coupling plus the spin-orbit coupling matrix elements. Even when spin-orbit coupling is neglected, the method is useful because it allows calculations by electronic structure methods for which nonadiabatic coupling vectors are unavailable. In order to place the new considerations in context, the article starts out with a review of background material on trajectory surface hopping, the semiclassical Ehrenfest scheme, and methods for incorporating decoherence. We consider both internal conversion and intersystem crossing. We also review several examples from our group of successful applications of the curvature-driven approximation.
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Affiliation(s)
- Yinan Shu
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Donald G Truhlar
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
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12
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Araujo L, Lasser C, Schmidt B. FSSH-2: Fewest Switches Surface Hopping with Robust Switching Probability. J Chem Theory Comput 2024; 20:3413-3419. [PMID: 38696709 DOI: 10.1021/acs.jctc.4c00089] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/04/2024]
Abstract
This study introduces the FSSH-2 scheme, a redefined and numerically stable adiabatic Fewest Switches Surface Hopping (FSSH) method for mixed quantum-classical dynamics. It reformulates the standard FSSH hopping probability without using nonadiabatic coupling vectors and allows for numerical time integration with larger step sizes. The advantages of FSSH-2 are demonstrated by numerical experiments for five different model systems in one and two spatial dimensions with up to three electronic states.
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Affiliation(s)
- Leonardo Araujo
- Department of Mathematics, TUM School of Computation, Information and Technology, Technische Universität München, Boltzmannstr. 3, 85748 Garching bei München, Germany
| | - Caroline Lasser
- Department of Mathematics, TUM School of Computation, Information and Technology, Technische Universität München, Boltzmannstr. 3, 85748 Garching bei München, Germany
| | - Burkhard Schmidt
- Weierstrass Institute for Applied Analysis and Stochastics, Mohrenstr. 39, 10117 Berlin, Germany
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13
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Galiana J, Lasorne B. Excitation energy transfer and vibronic relaxation through light-harvesting dendrimer building blocks: A nonadiabatic perspective. J Chem Phys 2024; 160:104104. [PMID: 38465688 DOI: 10.1063/5.0193264] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Accepted: 02/20/2024] [Indexed: 03/12/2024] Open
Abstract
The light-harvesting excitonic properties of poly(phenylene ethynylene) (PPE) extended dendrimers (tree-like π-conjugated macromolecules) involve a directional cascade of local excitation energy transfer (EET) processes occurring from the "leaves" (shortest branches) to the "trunk" (longest branch), which can be viewed from a vibronic perspective as a sequence of internal conversions occurring among a connected graph of nonadiabatically coupled locally excited electronic states via conical intersections. The smallest PPE building block that is able to exhibit EET, the asymmetrically meta-substituted PPE oligomer with one acetylenic bond on one side and two parallel ones on the other side (hence, 2-ring and 3-ring para-substituted pseudo-fragments), is a prototype and the focus of the present work. From linear-response time-dependent density functional theory electronic-structure calculations of the molecule as regards its first two nonadiabatically coupled, optically active, singlet excited states, we built a (1 + 2)-state-8-dimensional vibronic-coupling Hamiltonian model for running subsequent multiconfiguration time-dependent Hartree wavepacket relaxations and propagations, yielding both steady-state absorption and emission spectra as well as real-time dynamics. The EET process from the shortest branch to the longest one occurs quite efficiently (about 80% quantum yield) within the first 25 fs after light excitation and is mediated vibrationally through acetylenic and quinoidal bond-stretching modes together with a particular role given to the central-ring anti-quinoidal rock-bending mode. Electronic and vibrational energy relaxations, together with redistributions of quantum populations and coherences, are interpreted herein through the lens of a nonadiabatic perspective, showing some interesting segregation among the foremost photoactive degrees of freedom as regards spectroscopy and reactivity.
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14
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Freixas VM, Oldani N, Tretiak S, Fernandez-Alberti S. Twisting Aromaticity and Photoinduced Dynamics in Hexapole Helicenes. J Phys Chem Lett 2023; 14:10145-10150. [PMID: 37924328 DOI: 10.1021/acs.jpclett.3c02628] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2023]
Abstract
Curved aromatic molecules are attractive electronic materials, where an additional internal strain uniquely modifies their structure, aromaticity, dynamics, and optical properties. Helicenes are examples of such twisted conjugated systems. Herein, we analyze the photoinduced dynamics in different stereoisomers of a hexapole helicene by using nonadiabatic excited-state molecular dynamics simulations. We explore how changes in symmetry and structural distortion modulate the intramolecular energy redistribution. We find that distinct helical assembly leads to different rigid distorted structures that in turn impact the nonradiative energy relaxation and ultimately formation of the self-trapped exciton. Subsequently, the value of the twisting angles relative to the central triphenylene core structure controls the global molecular aromaticity and electronic localization during the internal conversion process. Our work sheds light on how the future synthesis of novel curved aromatic compounds can be directed to attain specific desired electronic properties through the modulation of their twisted aromaticity.
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Affiliation(s)
- Victor M Freixas
- Department of Chemistry and Physics and Astronomy, University of California, Irvine, California 92697-2025, United States
| | - Nicolas Oldani
- Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes/CONICET, B1876BXD Bernal, Argentina
| | - Sergei Tretiak
- Theoretical Division and Center for Integrated Nanotechnologies, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
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15
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Li G, Shi Z, Guo X, Wang L. What is Missing in the Mean Field Description of Spatial Distribution of Population? Important Role of Auxiliary Wave Packets in Trajectory Branching. J Phys Chem Lett 2023; 14:9855-9863. [PMID: 37890155 DOI: 10.1021/acs.jpclett.3c02690] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/29/2023]
Abstract
When the traditional Ehrenfest mean field approach is employed to simulate nonadiabatic dynamics, an effective wave packet (WP) on the average potential energy surface (PES) is utilized to describe the nuclear motion. In the fully quantum picture, however, the WP components on different adiabatic PESs gradually separate in space because they evolve under different velocities and forces. Due to trajectory branching of the WP components, proper decoherence needs to be taken into account, and the spatial distribution of population cannot be described by a single effective WP. Here, we propose an auxiliary branching corrected mean field (A-BCMF) method, where trajectories of auxiliary WPs on adiabatic PESs are introduced. As benchmarked in the three standard Tully models, A-BCMF not only gives correct channel populations but also captures an accurate time-dependent spatial distribution of population. Thereby, we reveal the important role of auxiliary WPs in solving intrinsic problems of the widely used mean field description of nonadiabatic dynamics.
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Affiliation(s)
- Guijie Li
- Key Laboratory of Excited-State Materials of Zhejiang Province, Department of Chemistry, Zhejiang University, Hangzhou 310058, China
| | - Zhecun Shi
- Key Laboratory of Excited-State Materials of Zhejiang Province, Department of Chemistry, Zhejiang University, Hangzhou 310058, China
| | - Xin Guo
- Key Laboratory of Excited-State Materials of Zhejiang Province, Department of Chemistry, Zhejiang University, Hangzhou 310058, China
| | - Linjun Wang
- Key Laboratory of Excited-State Materials of Zhejiang Province, Department of Chemistry, Zhejiang University, Hangzhou 310058, China
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16
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Mejia-Rodriguez D, Aprà E, Autschbach J, Bauman NP, Bylaska EJ, Govind N, Hammond JR, Kowalski K, Kunitsa A, Panyala A, Peng B, Rehr JJ, Song H, Tretiak S, Valiev M, Vila FD. NWChem: Recent and Ongoing Developments. J Chem Theory Comput 2023; 19:7077-7096. [PMID: 37458314 DOI: 10.1021/acs.jctc.3c00421] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2023]
Abstract
This paper summarizes developments in the NWChem computational chemistry suite since the last major release (NWChem 7.0.0). Specifically, we focus on functionality, along with input blocks, that is accessible in the current stable release (NWChem 7.2.0) and in the "master" development branch, interfaces to quantum computing simulators, interfaces to external libraries, the NWChem github repository, and containerization of NWChem executable images. Some ongoing developments that will be available in the near future are also discussed.
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Affiliation(s)
- Daniel Mejia-Rodriguez
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Edoardo Aprà
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Jochen Autschbach
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260-3000, United States
| | - Nicholas P Bauman
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Eric J Bylaska
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Niranjan Govind
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Jeff R Hammond
- Accelerated Computing, NVIDIA Helsinki Oy, Porkkalankatu 1, 00180 Helsinki, Finland
| | - Karol Kowalski
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Alexander Kunitsa
- Zapata Computing, Inc., 100 Federal Street, Boston, Massachusetts 02110, United States
| | - Ajay Panyala
- Advanced Computing, Mathematics, and Data Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Bo Peng
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - John J Rehr
- Department of Physics, University of Washington, Seattle, Washington 98195, United States
| | - Huajing Song
- Physics and Chemistry of Materials, Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Sergei Tretiak
- Physics and Chemistry of Materials, Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
- Center for Integrated Nanotechnologies, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Marat Valiev
- Physical Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Fernando D Vila
- Department of Physics, University of Washington, Seattle, Washington 98195, United States
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17
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Zhao X, Merritt ICD, Lei R, Shu Y, Jacquemin D, Zhang L, Xu X, Vacher M, Truhlar DG. Nonadiabatic Coupling in Trajectory Surface Hopping: Accurate Time Derivative Couplings by the Curvature-Driven Approximation. J Chem Theory Comput 2023; 19:6577-6588. [PMID: 37772732 DOI: 10.1021/acs.jctc.3c00813] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/30/2023]
Abstract
Trajectory surface hopping (TSH) is a widely used mixed quantum-classical dynamics method that is used to simulate molecular dynamics with multiple electronic states. In TSH, time-derivative coupling is employed to propagate the electronic coefficients and in that way to determine when the electronic state on which the nuclear trajectory is propagated switches. In this work, we discuss nonadiabatic TSH dynamics algorithms employing the curvature-driven approximation and overlap-based time derivative couplings, and we report test calculations on six photochemical reactions where we compare the results to one another and to calculations employing analytic nonadiabatic coupling vectors. We correct previous published results thanks to a bug found in the software. We also provide additional, more detailed studies of the time-derivative couplings. Our results show good agreement between curvature-driven algorithms and overlap-based algorithms.
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Affiliation(s)
- Xiaorui Zhao
- Center for Combustion Energy, Tsinghua University, Beijing 100084, P. R. China
- School of Aerospace Engineering, Tsinghua University, Beijing 100084, P. R. China
| | | | - Ruiqing Lei
- Center for Combustion Energy, Tsinghua University, Beijing 100084, P. R. China
| | - Yinan Shu
- Department of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Denis Jacquemin
- Nantes Université, CNRS, CEISAM UMR 6230, Nantes F-44000, France
- Institut Universitaire de France (IUF), Paris 75005, France
| | - Linyao Zhang
- School of Energy Science and Engineering, Harbin Institute of Technology, Harbin 150001, P. R. China
| | - Xuefei Xu
- Center for Combustion Energy, Tsinghua University, Beijing 100084, P. R. China
- Department of Energy and Power Engineering, and Key Laboratory for Thermal Science and Power Engineering of Ministry of Education, Tsinghua University, Beijing 100084, P. R. China
| | - Morgane Vacher
- Nantes Université, CNRS, CEISAM UMR 6230, Nantes F-44000, France
| | - Donald G Truhlar
- Department of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
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18
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Freixas VM, Malone W, Li X, Song H, Negrin-Yuvero H, Pérez-Castillo R, White A, Gibson TR, Makhov DV, Shalashilin DV, Zhang Y, Fedik N, Kulichenko M, Messerly R, Mohanam LN, Sharifzadeh S, Bastida A, Mukamel S, Fernandez-Alberti S, Tretiak S. NEXMD v2.0 Software Package for Nonadiabatic Excited State Molecular Dynamics Simulations. J Chem Theory Comput 2023; 19:5356-5368. [PMID: 37506288 DOI: 10.1021/acs.jctc.3c00583] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/30/2023]
Abstract
We present NEXMD version 2.0, the second release of the NEXMD (Nonadiabatic EXcited-state Molecular Dynamics) software package. Across a variety of new features, NEXMD v2.0 incorporates new implementations of two hybrid quantum-classical dynamics methods, namely, Ehrenfest dynamics (EHR) and the Ab-Initio Multiple Cloning sampling technique for Multiconfigurational Ehrenfest quantum dynamics (MCE-AIMC or simply AIMC), which are alternative options to the previously implemented trajectory surface hopping (TSH) method. To illustrate these methodologies, we outline a direct comparison of these three hybrid quantum-classical dynamics methods as implemented in the same NEXMD framework, discussing their weaknesses and strengths, using the modeled photodynamics of a polyphenylene ethylene dendrimer building block as a representative example. We also describe the expanded normal-mode analysis and constraints for both the ground and excited states, newly implemented in the NEXMD v2.0 framework, which allow for a deeper analysis of the main vibrational motions involved in vibronic dynamics. Overall, NEXMD v2.0 expands the range of applications of NEXMD to a larger variety of multichromophore organic molecules and photophysical processes involving quantum coherences and persistent couplings between electronic excited states and nuclear velocity.
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Affiliation(s)
- Victor M Freixas
- Departments of Chemistry and Physics and Astronomy, University of California, Irvine, California 92697-2025, United States
| | - Walter Malone
- Department of Physics, Tuskegee University, Tuskegee, Alabama 36088, United States
| | - Xinyang Li
- Theoretical Division, Center for Nonlinear Studies (CNLS), and Center for Integrated Nanotechnologies (CINT), Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Huajing Song
- Theoretical Division, Center for Nonlinear Studies (CNLS), and Center for Integrated Nanotechnologies (CINT), Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Hassiel Negrin-Yuvero
- Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes/CONICET, B1876BXD Bernal, Argentina
| | - Royle Pérez-Castillo
- Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes/CONICET, B1876BXD Bernal, Argentina
| | - Alexander White
- Theoretical Division, Center for Nonlinear Studies (CNLS), and Center for Integrated Nanotechnologies (CINT), Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Tammie R Gibson
- Theoretical Division, Center for Nonlinear Studies (CNLS), and Center for Integrated Nanotechnologies (CINT), Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Dmitry V Makhov
- School of Chemistry, University of Leeds, Leeds LS2 9JT, United Kingdom
- School of Mathematics, University of Bristol, Bristol BS8 1TW, United Kingdom
| | | | - Yu Zhang
- Theoretical Division, Center for Nonlinear Studies (CNLS), and Center for Integrated Nanotechnologies (CINT), Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Nikita Fedik
- Theoretical Division, Center for Nonlinear Studies (CNLS), and Center for Integrated Nanotechnologies (CINT), Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Maksim Kulichenko
- Theoretical Division, Center for Nonlinear Studies (CNLS), and Center for Integrated Nanotechnologies (CINT), Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Richard Messerly
- Theoretical Division, Center for Nonlinear Studies (CNLS), and Center for Integrated Nanotechnologies (CINT), Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Luke Nambi Mohanam
- Department of Electrical and Computer Engineering, College of Engineering, Boston University, Boston, Massachusetts 02215, United States
| | - Sahar Sharifzadeh
- Department of Electrical and Computer Engineering, College of Engineering, Boston University, Boston, Massachusetts 02215, United States
| | - Adolfo Bastida
- Departamento de Química Física, Universidad de Murcia, Murcia 30100, Spain
| | - Shaul Mukamel
- Departments of Chemistry and Physics and Astronomy, University of California, Irvine, California 92697-2025, United States
| | | | - Sergei Tretiak
- Theoretical Division, Center for Nonlinear Studies (CNLS), and Center for Integrated Nanotechnologies (CINT), Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
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19
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Zheng Z, Shi Y, Zhou JJ, Prezhdo OV, Zheng Q, Zhao J. Ab initio real-time quantum dynamics of charge carriers in momentum space. NATURE COMPUTATIONAL SCIENCE 2023; 3:532-541. [PMID: 38177418 DOI: 10.1038/s43588-023-00456-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2022] [Accepted: 04/21/2023] [Indexed: 01/06/2024]
Abstract
Application of the non-adiabatic molecular dynamics (NAMD) approach is limited to studying carrier dynamics in the momentum space, as a supercell is required to sample the phonon excitation and electron-phonon (e-ph) interaction at different momenta in a molecular dynamics simulation. Here we develop an ab initio approach for the real-time charge carrier quantum dynamics in the momentum space (NAMD_k) by directly introducing e-ph coupling into the Hamiltonian based on the harmonic approximation. The NAMD_k approach maintains the zero-point energy and includes memory effects of carrier dynamics. The application of NAMD_k to the hot carrier dynamics in graphene reveals the phonon-specific relaxation mechanism. An energy threshold of 0.2 eV-defined by two optical phonon modes-separates the hot electron relaxation into fast and slow regions with lifetimes of pico- and nanoseconds, respectively. The NAMD_k approach provides an effective tool to understand real-time carrier dynamics in the momentum space for different materials.
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Affiliation(s)
- Zhenfa Zheng
- Department of Physics, ICQD/Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei, China
| | - Yongliang Shi
- Department of Physics, ICQD/Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei, China.
- Center for Spintonics and Quantum Systerms, State Key Laboratory for Mechanical Behavior of Materials, School of Materials Science and Engineering, Xi'an Jiaotong University, Xi'an, China.
- State Key Laboratory of Surface Physics and Department of Physics, Fudan University, Shanghai, China.
| | - Jin-Jian Zhou
- School of Physics, Beijing Institute of Technology, Beijing, China
| | - Oleg V Prezhdo
- Departments of Chemistry, Physics, and Astronomy, University of Southern California, Los Angeles, CA, USA
| | - Qijing Zheng
- Department of Physics, ICQD/Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei, China.
| | - Jin Zhao
- Department of Physics, ICQD/Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei, China.
- Department of Physics and Astronomy, University of Pittsburgh, Pittsburgh, PA, USA.
- Hefei National Laboratory, University of Science and Technology of China, Hefei, China.
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20
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Negrin-Yuvero H, Freixas VM, Ondarse-Alvarez D, Alfonso-Hernandez L, Rojas-Lorenzo G, Bastida A, Tretiak S, Fernandez-Alberti S. Vibrational Funnels for Energy Transfer in Organic Chromophores. J Phys Chem Lett 2023; 14:4673-4681. [PMID: 37167537 DOI: 10.1021/acs.jpclett.3c00748] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Photoinduced intramolecular energy transfers in multichromophoric molecules involve nonadiabatic vibronic channels that act as energy transfer funnels. They commonly take place through specific directions of motion dictated by the nonadiabatic coupling vectors. Vibrational funnels may support persistent coherences between electronic states and sometimes delineate the presence of minor alternative energy transfer pathways. The ultimate confirmation of their role on the interchromophoric energy transfer can be achieved by performing nonadiabatic excited-state molecular dynamics simulations by selectively freezing the nuclear motions in question. Our results point out this strategy as a useful tool to identify and evaluate the impact of these vibrational funnels on the energy transfer processes and guide the in silico design of materials with tunable properties and enhanced functionalities. Our work encourages applications of this methodology to different chemical and biochemical processes such as reactive scattering and protein conformational changes, to name a few.
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Affiliation(s)
- Hassiel Negrin-Yuvero
- Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes/CONICET, Bernal B1876BXD, Argentina
| | - Victor Manuel Freixas
- Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes/CONICET, Bernal B1876BXD, Argentina
| | - Dianelys Ondarse-Alvarez
- Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes/CONICET, Bernal B1876BXD, Argentina
| | - Laura Alfonso-Hernandez
- Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes/CONICET, Bernal B1876BXD, Argentina
| | - German Rojas-Lorenzo
- Departamento de Física Atómica y Molecular, Instituto Superior de Tecnologías y Ciencias Aplicadas, Universidad de La Habana, La Habana 10400, Cuba
| | - Adolfo Bastida
- Departamento de Química Física, Universidad de Murcia, Murcia 30100, Spain
| | - Sergei Tretiak
- Theoretical Division, Center for Nonlinear Studies (CNLS), and Center for Integrated Nanotechnologies (CINT), Los Alamos National Laboratory, Los Alamos 87545, New Mexico, USA
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21
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Bonilla V, Freixas VM, Fernandez-Alberti S, Galindo JF. Impact of the core on the inter-branch exciton exchange in dendrimers. Phys Chem Chem Phys 2023; 25:12097-12106. [PMID: 37133823 DOI: 10.1039/d2cp06009d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Organic dendrimers with π conjugated systems are capable of capturing solar energy as a renewable source for human use. Nonetheless, further study regarding the relationship between the structure and the energy transfer mechanism in these types of molecules is still necessary. In this work, nonadiabatic excited state molecular dynamics (NEXMD) were carried out to study the intra- and inter-branch exciton migration in two tetra-branched dendrimers, C(dSSB)4 and Ad(BuSSB)4, which differ in their respective carbon and adamantane core. Both systems undergo a ladder decay mechanism between excited states, with back-and-forth transitions between S1 and S2. Despite presenting very similar absorption-emission spectra, differences in the photoinduced energy relaxation are observed. The size of the core impacts the inter-branch energy exchange and transient exciton localization/delocalization, which ultimately condition the relative energy relaxation rates, being faster in Ad(BuSSB)4 with respect to C(dSSB)4. Nevertheless, the photoinduced processes lead to a progressive final exciton-self-trapping in one of the branches of both dendrimers, which is a desirable feature in organic photovoltaic applications. Our results can inspire the design of more efficient dendrimers with the desired magnitude of inter-branch exciton exchange and localization/delocalization according to changes in their core.
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Affiliation(s)
- Valeria Bonilla
- Departamento de Química, Universidad Nacional de Colombia, Sede Bogotá, 111321, Bogotá, Colombia.
| | - Victor M Freixas
- Departamento de Ciencia y Tecnología, Universidad Nacional de Quilmes/CONICET, B1876BXD Bernal, Argentina
| | | | - Johan Fabian Galindo
- Departamento de Química, Universidad Nacional de Colombia, Sede Bogotá, 111321, Bogotá, Colombia.
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22
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Qiu T, Climent C, Subtonik JE. A Practical Approach to Wave Function Propagation, Hopping Probabilities, and Time Steps in Surface Hopping Calculations. J Chem Theory Comput 2023; 19:2744-2757. [PMID: 37130302 DOI: 10.1021/acs.jctc.3c00126] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
We compare several established approaches for propagating wave functions and calculating hopping probabilities within the fewest switches surface hopping (FSSH) algorithm for difficult cases with many electronic states and many trivial crossings. If only a single time step (Δtc) is employed, we find that no published approach can accurately capture the dynamics correctly unless Δtc → 0 (which is not computationally feasible). If multiple time steps are employed, for a fixed classical time step (Δtc), a robust scheme can be found for dynamically choosing quantum time steps (δtq1 and δtq2) and calculating hopping probabilities so that one can systematically reduce all errors and achieve maximally efficient accuracy; scattering calculations confirm that one can choose a fairly large classical time step. The robust scheme presented here uses both the "local diabatic" and adiabatic interpolation and thus borrows elements from both the Granucci/Persico and Meek/Levine algorithms. Our findings should be broadly applicable in the future.
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Affiliation(s)
- Tian Qiu
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
| | - Clàudia Climent
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
| | - Joseph E Subtonik
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
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23
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Weight BM, Sifain AE, Gifford BJ, Htoon H, Tretiak S. On-the-Fly Nonadiabatic Dynamics Simulations of Single-Walled Carbon Nanotubes with Covalent Defects. ACS NANO 2023; 17:6208-6219. [PMID: 36972076 DOI: 10.1021/acsnano.2c08579] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Single-walled carbon nanotubes (SWCNTs) with covalent surface defects have been explored recently due to their promise for use in single-photon telecommunication emission and in spintronic applications. The all-atom dynamic evolution of electrostatically bound excitons (the primary electronic excitations) in these systems has only been loosely explored from a theoretical perspective due to the size limitations of these large systems (>500 atoms). In this work, we present computational modeling of nonradiative relaxation in a variety of SWCNT chiralities with single-defect functionalizations. Our excited-state dynamics modeling uses a trajectory surface hopping algorithm accounting for excitonic effects with a configuration interaction approach. We find a strong chirality and defect-composition dependence on the population relaxation (varying over 50-500 fs) between the primary nanotube band gap excitation E11 and the defect-associated, single-photon-emitting E11* state. These simulations give direct insight into the relaxation between the band-edge states and the localized excitonic state, in competition with dynamic trapping/detrapping processes observed in experiment. Engineering fast population decay into the quasi-two-level subsystem with weak coupling to higher-energy states increases the effectiveness and controllability of these quantum light emitters.
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Affiliation(s)
- Braden M Weight
- Department of Physics and Astronomy, University of Rochester, Rochester, New York 14627, United States
- Center for Integrated Nanotechnologies, Center for Nonlinear Studies, and Theoretical Division Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Andrew E Sifain
- Department of Chemistry, Princeton University, Princeton, New Jersey 08540 United States
| | - Brendan J Gifford
- Center for Integrated Nanotechnologies, Center for Nonlinear Studies, and Theoretical Division Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Han Htoon
- Center for Integrated Nanotechnologies, Center for Nonlinear Studies, and Theoretical Division Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Sergei Tretiak
- Center for Integrated Nanotechnologies, Center for Nonlinear Studies, and Theoretical Division Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
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24
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Toldo JM, do Casal MT, Ventura E, do Monte SA, Barbatti M. Surface hopping modeling of charge and energy transfer in active environments. Phys Chem Chem Phys 2023; 25:8293-8316. [PMID: 36916738 PMCID: PMC10034598 DOI: 10.1039/d3cp00247k] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Accepted: 03/01/2023] [Indexed: 03/05/2023]
Abstract
An active environment is any atomic or molecular system changing a chromophore's nonadiabatic dynamics compared to the isolated molecule. The action of the environment on the chromophore occurs by changing the potential energy landscape and triggering new energy and charge flows unavailable in the vacuum. Surface hopping is a mixed quantum-classical approach whose extreme flexibility has made it the primary platform for implementing novel methodologies to investigate the nonadiabatic dynamics of a chromophore in active environments. This Perspective paper surveys the latest developments in the field, focusing on charge and energy transfer processes.
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Affiliation(s)
| | | | - Elizete Ventura
- Departamento de Química, CCEN, Universidade Federal da Paraíba, 58059-900, João Pessoa, Brazil.
| | - Silmar A do Monte
- Departamento de Química, CCEN, Universidade Federal da Paraíba, 58059-900, João Pessoa, Brazil.
| | - Mario Barbatti
- Aix-Marseille University, CNRS, ICR, Marseille, France.
- Institut Universitaire de France, 75231, Paris, France
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25
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Zhao X, Shu Y, Zhang L, Xu X, Truhlar DG. Direct Nonadiabatic Dynamics of Ammonia with Curvature-Driven Coherent Switching with Decay of Mixing and with Fewest Switches with Time Uncertainty: An Illustration of Population Leaking in Trajectory Surface Hopping Due to Frustrated Hops. J Chem Theory Comput 2023; 19:1672-1685. [PMID: 36877830 DOI: 10.1021/acs.jctc.2c01260] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/08/2023]
Abstract
Mixed quantum-classical nonadiabatic dynamics is a widely used approach to simulate molecular dynamics involving multiple electronic states. There are two main categories of mixed quantum-classical nonadiabatic dynamics algorithms, namely, trajectory surface hopping (TSH) in which the trajectory propagates on a single potential energy surface, interrupted by hops, and self-consistent-potential (SCP) methods, such as semiclassical Ehrenfest, in which propagation occurs on a mean-field surface without hops. In this work, we will illustrate an example of severe population leaking in TSH. We emphasize that such leaking is a combined effect of frustrated hops and long-time simulations that drive the final excited-state population toward zero as a function of time. We further show that such leaking can be alleviated-but not eliminated-by the fewest switches with time uncertainty TSH algorithm (here implemented in the SHARC program); the time uncertainty algorithm slows down the leaking process by a factor of 4.1. The population leaking is not present in coherent switching with decay of mixing (CSDM), which is an SCP method with non-Markovian decoherence included. Another result in this paper is that we find very similar results with the original CSDM algorithm, with time-derivative CSDM (tCSDM), and with curvature-driven CSDM (κCSDM). Not only do we find good agreement for electronically nonadiabatic transition probabilities but also we find good agreement of the norms of the effective nonadiabatic couplings (NACs) that are derived from the curvature-driven time-derivative couplings as implemented in κCSDM with the time-dependent norms of the nonadiabatic coupling vectors computed by state-averaged complete-active-space self-consistent field theory.
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Affiliation(s)
- Xiaorui Zhao
- Center for Combustion Energy, Tsinghua University, Beijing 100084, P. R. China.,School of Aerospace Engineering, Tsinghua University, Beijing 100084, P. R. China
| | - Yinan Shu
- Department of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Linyao Zhang
- School of Energy Science and Engineering, Harbin Institute of Technology, Harbin 150001, P. R. China
| | - Xuefei Xu
- Center for Combustion Energy, Tsinghua University, Beijing 100084, P. R. China
| | - Donald G Truhlar
- Department of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
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26
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Zhou Z, Wu Y, Bian X, Subotnik JE. Nonadiabatic Dynamics in a Continuous Circularly Polarized Laser Field with Floquet Phase-Space Surface Hopping. J Chem Theory Comput 2023; 19:718-732. [PMID: 36655857 DOI: 10.1021/acs.jctc.2c00948] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Nonadiabatic chemical reactions involving continuous circularly polarized light (cw CPL) have not attracted as much attention as dynamics in unpolarized/linearly polarized light. However, including circularly (in contrast to linearly) polarized light allows one to effectively introduce a complex-valued time-dependent Hamiltonian, which offers a new path for control or exploration through the introduction of Berry forces. Here, we investigate several inexpensive semiclassical approaches for modeling such nonadiabatic dynamics in the presence of a time-dependent complex-valued Hamiltonian, beginning with a straightforward instantaneous adiabatic fewest-switches surface hopping (IA-FSSH) approach (where the electronic states depend on position and time), continuing to a standard Floquet fewest switches surface hopping (F-FSSH) approach (where the electronic states depend on position and frequency), and ending with an exotic Floquet phase-space surface hopping (F-PSSH) approach (where the electronic states depend on position, frequency, and momentum). Using a set of model systems with time-dependent complex-valued Hamiltonians, we show that the Floquet phase-space adiabats are the optimal choice of basis as far as accounting for Berry phase effects and delivering accuracy. Thus, the F-PSSH algorithm sets the stage for future modeling of nonadiabatic dynamics under strong externally pumped circular polarization.
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Affiliation(s)
- Zeyu Zhou
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
| | - Yanze Wu
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
| | - Xuezhi Bian
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
| | - Joseph Eli Subotnik
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
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27
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Ren Y, Wang Y, Zhao M, Zhou Z, Zhang Q, Zhu Q, Wu K. Dynamics of Phonon-Assisted Holes Trapping and Transport over Chemical Defects in Polyethylene. J Phys Chem B 2023; 127:1039-1049. [PMID: 36662499 DOI: 10.1021/acs.jpcb.2c07005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
Charge trapping and transport over chemical defects in polyethylene have significant impacts on its electrical and dielectric properties. However, the dynamics of this phenomenon and its underlying mechanisms remain unclear. To understand this fundamental aspect, we conducted a time-domain ab initio nonadiabatic molecular dynamics study of phonon-assisted holes dynamics in polyethylene over C═O and C-OH defect states. Our results suggest that the hole transfer and energy fluctuations substantially depend on temperature and local morphology. When the temperature decreases from 300 to 100 K, the hole transfer efficiency and the energy fluctuations are severely suppressed due to the weakened interactions between holes and phonons. Furthermore, amorphous polyethylene exhibits a severe suppression of the hole transfer process compared to crystalline polyethylene. An explanation for the influence of morphology on the hole transfer process can be found in the differences in the hole-phonon coupling and the electronic coupling between two chemical defect states in crystalline and amorphous polyethylene. Advancing the fundamental understanding of the dynamics of hole transfer over chemical effects in polymers is a key to improving their insulating properties for the next-generation high-voltage cables.
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Affiliation(s)
- Yuanyang Ren
- State Key Laboratory of Electrical Insulation and Power Equipment, Xi'an Jiaotong University, 28 Xianning West Road, Xi'an 710049, China
| | - Yang Wang
- School of Electronics and Information, Xi'an Polytechnic University, 19 Jinhua South Road, Xi'an 710048, China
| | - Manqing Zhao
- School of Electronics and Information, Xi'an Polytechnic University, 19 Jinhua South Road, Xi'an 710048, China
| | - Zilin Zhou
- State Key Laboratory of Electrical Insulation and Power Equipment, Xi'an Jiaotong University, 28 Xianning West Road, Xi'an 710049, China
| | - Qiankai Zhang
- School of Electronics and Information, Xi'an Polytechnic University, 19 Jinhua South Road, Xi'an 710048, China
| | - Qingdong Zhu
- State Grid Shandong Electric Power Company Electric Power Research Institute, 2000 Wangyue Road, Jinan 250001, China
| | - Kai Wu
- State Key Laboratory of Electrical Insulation and Power Equipment, Xi'an Jiaotong University, 28 Xianning West Road, Xi'an 710049, China
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28
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Chen WK, Fang WH, Cui G. Extending multi-layer energy-based fragment method for excited-state calculations of large covalently bonded fragment systems. J Chem Phys 2023; 158:044110. [PMID: 36725521 DOI: 10.1063/5.0129458] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023] Open
Abstract
Recently, we developed a low-scaling Multi-Layer Energy-Based Fragment (MLEBF) method for accurate excited-state calculations and nonadiabatic dynamics simulations of nonbonded fragment systems. In this work, we extend the MLEBF method to treat covalently bonded fragment ones. The main idea is cutting a target system into many fragments according to chemical properties. Fragments with dangling bonds are first saturated by chemical groups; then, saturated fragments, together with the original fragments without dangling bonds, are grouped into different layers. The accurate total energy expression is formulated with the many-body energy expansion theory, in combination with the inclusion-exclusion principle that is used to delete the contribution of chemical groups introduced to saturate dangling bonds. Specifically, in a two-layer MLEBF model, the photochemically active and inert layers are calculated with high-level and efficient electronic structure methods, respectively. Intralayer and interlayer energies can be truncated at the two- or three-body interaction level. Subsequently, through several systems, including neutral and charged covalently bonded fragment systems, we demonstrate that MLEBF can provide accurate ground- and excited-state energies and gradients. Finally, we realize the structure, conical intersection, and path optimizations by combining our MLEBF program with commercial and free packages, e.g., ASE and SciPy. These developments make MLEBF a practical and reliable tool for studying complex photochemical and photophysical processes of large nonbonded and bonded fragment systems.
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Affiliation(s)
- Wen-Kai Chen
- Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry, Beijing Normal University, Beijing 100875, China
| | - Wei-Hai Fang
- Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry, Beijing Normal University, Beijing 100875, China
| | - Ganglong Cui
- Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry, Beijing Normal University, Beijing 100875, China
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29
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Barbatti M, Bondanza M, Crespo-Otero R, Demoulin B, Dral PO, Granucci G, Kossoski F, Lischka H, Mennucci B, Mukherjee S, Pederzoli M, Persico M, Pinheiro Jr M, Pittner J, Plasser F, Sangiogo Gil E, Stojanovic L. Newton-X Platform: New Software Developments for Surface Hopping and Nuclear Ensembles. J Chem Theory Comput 2022; 18:6851-6865. [PMID: 36194696 PMCID: PMC9648185 DOI: 10.1021/acs.jctc.2c00804] [Citation(s) in RCA: 37] [Impact Index Per Article: 18.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2022] [Indexed: 12/01/2022]
Abstract
Newton-X is an open-source computational platform to perform nonadiabatic molecular dynamics based on surface hopping and spectrum simulations using the nuclear ensemble approach. Both are among the most common methodologies in computational chemistry for photophysical and photochemical investigations. This paper describes the main features of these methods and how they are implemented in Newton-X. It emphasizes the newest developments, including zero-point-energy leakage correction, dynamics on complex-valued potential energy surfaces, dynamics induced by incoherent light, dynamics based on machine-learning potentials, exciton dynamics of multiple chromophores, and supervised and unsupervised machine learning techniques. Newton-X is interfaced with several third-party quantum-chemistry programs, spanning a broad spectrum of electronic structure methods.
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Affiliation(s)
- Mario Barbatti
- Aix
Marseille University, CNRS, ICR, 13013Marseille, France
- Institut
Universitaire de France, 75231Paris, France
| | - Mattia Bondanza
- Dipartimento
di Chimica e Chimica Industriale, Università
di Pisa, via Moruzzi
13, 56124Pisa, Italy
| | - Rachel Crespo-Otero
- Department
of Chemistry, Queen Mary University of London, Mile End Road, E1 4NSLondon, U.K.
| | | | - Pavlo O. Dral
- State
Key Laboratory of Physical Chemistry of Solid Surfaces, Fujian Provincial
Key Laboratory of Theoretical and Computational Chemistry, Department
of Chemistry, and College of Chemistry and Chemical Engineering, Xiamen University, 361005Xiamen, China
| | - Giovanni Granucci
- Dipartimento
di Chimica e Chimica Industriale, Università
di Pisa, via Moruzzi
13, 56124Pisa, Italy
| | - Fábris Kossoski
- Laboratoire
de Chimie et Physique Quantiques (UMR 5626), Université de Toulouse, CNRS, UPS, 31000Toulouse, France
| | - Hans Lischka
- Department
of Chemistry and Biochemistry, Texas Tech
University, Lubbock, Texas79409, United States
| | - Benedetta Mennucci
- Dipartimento
di Chimica e Chimica Industriale, Università
di Pisa, via Moruzzi
13, 56124Pisa, Italy
| | | | - Marek Pederzoli
- J.
Heyrovsky Institute of Physical Chemistry, Academy of Sciences of the Czech Republic, v.v.i., Dolejškova 3, 18223Prague 8, Czech Republic
| | - Maurizio Persico
- Dipartimento
di Chimica e Chimica Industriale, Università
di Pisa, via Moruzzi
13, 56124Pisa, Italy
| | | | - Jiří Pittner
- J.
Heyrovsky Institute of Physical Chemistry, Academy of Sciences of the Czech Republic, v.v.i., Dolejškova 3, 18223Prague 8, Czech Republic
| | - Felix Plasser
- Department
of Chemistry, Loughborough University, LE11 3TULoughborough, U.K.
| | - Eduarda Sangiogo Gil
- Dipartimento
di Chimica e Chimica Industriale, Università
di Pisa, via Moruzzi
13, 56124Pisa, Italy
| | - Ljiljana Stojanovic
- Department
of Physics and Astronomy, University College
London, Gower Street, WC1E 6BTLondon, U.K.
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30
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Nelson T, Huestis PL, Manner VW. Modeling Photolytic Decomposition of Energetically Functionalized Dodecanes. J Phys Chem A 2022; 126:7094-7101. [PMID: 36196028 PMCID: PMC9574918 DOI: 10.1021/acs.jpca.2c03404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Revised: 09/20/2022] [Indexed: 11/28/2022]
Abstract
The photolytic stability of explosives and energetic functional groups is of importance for those who regularly handle or are exposed to explosives in typical environmental conditions. This study models the photolytic degradation of dodecane substituted with various energetic functional groups: azide, nitro, nitrate ester, and nitramine. For the studied molecules, it was found that excitons localize on the energetic functional group, no matter where they were initially formed, and thus, the predominant degradation pathway involves the degradation of the energetic functional group. The relative trends for both 4 and 8 eV excitation energies followed with what is expected from the relative stability of the energetic functional groups to thermal and sub-shock degradation. The one notable exception was the azide functional group; more work should be done to further understand the photolytic effects on the azide functional group.
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Affiliation(s)
- Tammie Nelson
- Physics
and Chemistry of Materials, Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Patricia L. Huestis
- High
Explosives Science & Technology, Los
Alamos National Laboratory, Los
Alamos, New Mexico 87545, United States
| | - Virginia W. Manner
- High
Explosives Science & Technology, Los
Alamos National Laboratory, Los
Alamos, New Mexico 87545, United States
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31
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Alfonso Hernandez L, Freixas VM, Rodriguez-Hernandez B, Tretiak S, Fernandez-Alberti S, Oldani N. Exciton-vibrational dynamics induces efficient self-trapping in a substituted nanoring. Phys Chem Chem Phys 2022; 24:24095-24104. [PMID: 36178044 DOI: 10.1039/d2cp03162k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Cycloparaphenylenes, being the smallest segments of carbon nanotubes, have emerged as prototypes of the simplest carbon nanohoops. Their unique structure-dynamics-optical properties relationships have motivated a wide variety of synthesis of new related nanohoop species. Studies of how chemical changes, introduced in these new materials, lead to systems with new structural, dynamics and optical properties, expand their functionalities for optoelectronics applications. Herein, we study the effect that conjugation extension of a cycloparaphenylene through the introduction of a satellite tetraphenyl substitution has on its structural and dynamical properties. Our non-adiabatic excited state molecular dynamics simulations suggest that this substitution accelerates the electronic relaxation from the high-energy band to the lowest excited state. This is partially due to efficient conjugation achieved between specific phenyl units as introduced by the tetraphenyl substitution. We observe a particular exciton redistribution during relaxation, in which the tetraphenyl substitution plays a significant role. As a result, an efficient inter-band energy transfer takes place. Besides, the observed phonon-exciton interplay induces a significant exciton self-trapping. Our results encourage and guide the future studies of new phenyl substitutions in carbon nanorings with desired optoelectronic properties.
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Affiliation(s)
- Laura Alfonso Hernandez
- Departamento de Ciencia Tecnologia, Universidad Nacional de Quilmes/CONICET, B1876BXD Bernal, Argentina.
| | - Victor M Freixas
- Departamento de Ciencia Tecnologia, Universidad Nacional de Quilmes/CONICET, B1876BXD Bernal, Argentina.
| | | | - Sergei Tretiak
- Theoretical Division and Center for Integrated Nanotechnologies, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | | | - Nicolas Oldani
- Departamento de Ciencia Tecnologia, Universidad Nacional de Quilmes/CONICET, B1876BXD Bernal, Argentina.
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32
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Pradhan CS, Jain A. Detailed Balance and Independent Electron Surface-Hopping Method: The Importance of Decoherence and Correct Calculation of Diabatic Populations. J Chem Theory Comput 2022; 18:4615-4626. [PMID: 35880817 DOI: 10.1021/acs.jctc.2c00320] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We benchmark and improve the independent electron surface-hopping (IESH) method developed by J. C. Tully's group for nonadiabatic simulations near metal surfaces. We have incorporated decoherence within the IESH method as well as implemented a scheme for the accurate calculation of diabatic populations. We benchmark the original IESH method with the above inclusions for a model system to calculate rate constants and long-time populations. The original IESH method fails to capture the detailed balance for some of the parameters, which is corrected with the inclusion of decoherence and accurate calculation of diabatic populations. Total rate constants are well captured both within the original IESH method as well as within our modified IESH.
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Affiliation(s)
- Chinmay S Pradhan
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India
| | - Amber Jain
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India
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33
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Wu X, Wen S, Song H, Frauenheim T, Tretiak S, Yam C, Zhang Y. Nonadiabatic Molecular Dynamics Simulations Based on Time-Dependent Density Functional Tight-Binding Method. J Chem Phys 2022; 157:084114. [DOI: 10.1063/5.0100339] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Nonadiabatic excited-state molecular dynamics underpin many photophysical and photochemical phenomena, such as exciton dynamics, charge separation and transport. In this work, we present an efficient nonadiabatic molecular dynamic (NAMD) simulation method based on time-dependent density functional tight-binding (TDDFTB) theory. Specifically, the adiabatic electronic structure, an essential NAMD input, is described at the TDDFTB level. The nonadiabatic effects originating from the coupled motions of electrons and nuclei are treated by the trajectory surface hopping algorithm. To improve the computational efficiency, nonadiabatic couplings between excited states within the TDDFTB method are derived and implemented using an analytical approach. Further, the time-dependent nonadiabatic coupling scalars are calculated based on the overlap between molecular orbitals rather than the Slater determinants to speed up the simulations. In addition, the electronic decoherence scheme and a state reassigned unavoided crossings algorithm, which has been implemented in the NEXMD software, are used to improve the accuracy of the simulated dynamics and handle trivial unavoided crossings. Finally, the photoinduced nonadiabatic dynamics of a benzene molecule are simulated to demonstrate our implementation. The results for excited state NAMD simulations of benzene molecule based on TDDFTB method compare well that obtained with numerically expensive time-dependent density functional theory. The proposed methodology provides an attractive theoretical simulation tool for predicting the photophysical and photochemical properties of complex materials.
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Affiliation(s)
- Xiaoyan Wu
- Shenzhen JL Computational Science and Applied Research Institute, Shenzhen JL Computational Science and Applied Research Institute, China
| | | | - Huajing Song
- Los Alamos National Laboratory, United States of America
| | | | - Sergei Tretiak
- Theoretical Division, T-1, Los Alamos National Laboratory, United States of America
| | - ChiYung Yam
- Beijing Computational Science Research Center, Beijing Computational Science Research Center, China
| | - Yu Zhang
- Theoretical Division, Los Alamos National Laboratory, United States of America
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34
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Shakiba M, Stippell E, Li W, Akimov AV. Nonadiabatic Molecular Dynamics with Extended Density Functional Tight-Binding: Application to Nanocrystals and Periodic Solids. J Chem Theory Comput 2022; 18:5157-5180. [PMID: 35758936 DOI: 10.1021/acs.jctc.2c00297] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
In this work, we report a new methodology for nonadiabatic molecular dynamics calculations within the extended tight-binding (xTB) framework. We demonstrate the applicability of the developed approach to finite and periodic systems with thousands of atoms by modeling "hot" electron relaxation dynamics in silicon nanocrystals and electron-hole recombination in both a graphitic carbon nitride monolayer and a titanium-based metal-organic framework (MOF). This work reports the nonadiabatic dynamic simulations in the largest Si nanocrystals studied so far by the xTB framework, with diameters up to 3.5 nm. For silicon nanocrystals, we find a non-monotonic dependence of "hot" electron relaxation rates on the nanocrystal size, in agreement with available experimental reports. We rationalize this relationship by a combination of decreasing nonadiabatic couplings related to system size and the increase of available coherent transfer pathways in systems with higher densities of states. We emphasize the importance of proper treatment of coherences for obtaining such non-monotonic dependences. We characterize the electron-hole recombination dynamics in the graphitic carbon nitride monolayer and the Ti-containing MOF. We demonstrate the importance of spin-adaptation and proper sampling of surface hopping trajectories in modeling such processes. We also assess several trajectory surface hopping schemes and highlight their distinct qualitative behavior in modeling the excited-state dynamics in superexchange-like models depending on how they handle coherences between nearly parallel states.
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Affiliation(s)
- Mohammad Shakiba
- Department of Chemistry, University at Buffalo, The State University of New York, Buffalo, New York 14260, United States
| | - Elizabeth Stippell
- Department of Chemistry, University of Southern California, Los Angeles, California 90089, United States
| | - Wei Li
- School of Chemistry and Materials Science, Hunan Agricultural University, Changsha 410128, China
| | - Alexey V Akimov
- Department of Chemistry, University at Buffalo, The State University of New York, Buffalo, New York 14260, United States
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35
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Ten Brink M, Gräber S, Hopjan M, Jansen D, Stolpp J, Heidrich-Meisner F, Blöchl PE. Real-time non-adiabatic dynamics in the one-dimensional Holstein model: Trajectory-based vs exact methods. J Chem Phys 2022; 156:234109. [PMID: 35732530 DOI: 10.1063/5.0092063] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We benchmark a set of quantum-chemistry methods, including multitrajectory Ehrenfest, fewest-switches surface-hopping, and multiconfigurational-Ehrenfest dynamics, against exact quantum-many-body techniques by studying real-time dynamics in the Holstein model. This is a paradigmatic model in condensed matter theory incorporating a local coupling of electrons to Einstein phonons. For the two-site and three-site Holstein model, we discuss the exact and quantum-chemistry methods in terms of the Born-Huang formalism, covering different initial states, which either start on a single Born-Oppenheimer surface, or with the electron localized to a single site. For extended systems with up to 51 sites, we address both the physics of single Holstein polarons and the dynamics of charge-density waves at finite electron densities. For these extended systems, we compare the quantum-chemistry methods to exact dynamics obtained from time-dependent density matrix renormalization group calculations with local basis optimization (DMRG-LBO). We observe that the multitrajectory Ehrenfest method, in general, only captures the ultrashort time dynamics accurately. In contrast, the surface-hopping method with suitable corrections provides a much better description of the long-time behavior but struggles with the short-time description of coherences between different Born-Oppenheimer states. We show that the multiconfigurational Ehrenfest method yields a significant improvement over the multitrajectory Ehrenfest method and can be converged to the exact results in small systems with moderate computational efforts. We further observe that for extended systems, this convergence is slower with respect to the number of configurations. Our benchmark study demonstrates that DMRG-LBO is a useful tool for assessing the quality of the quantum-chemistry methods.
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Affiliation(s)
- M Ten Brink
- Institut für Theoretische Physik, Georg-August-Universität Göttingen, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany
| | - S Gräber
- Institut für Theoretische Physik, Georg-August-Universität Göttingen, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany
| | - M Hopjan
- Institut für Theoretische Physik, Georg-August-Universität Göttingen, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany
| | - D Jansen
- Institut für Theoretische Physik, Georg-August-Universität Göttingen, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany
| | - J Stolpp
- Institut für Theoretische Physik, Georg-August-Universität Göttingen, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany
| | - F Heidrich-Meisner
- Institut für Theoretische Physik, Georg-August-Universität Göttingen, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany
| | - P E Blöchl
- Institut für Theoretische Physik, Georg-August-Universität Göttingen, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany
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36
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Du J, Ma Y, Ma J, Li S, Li W. Transition orbital projection approach for excited state tracking. J Chem Phys 2022; 156:214104. [DOI: 10.1063/5.0081207] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Quantitively comparing the features between different electronic excited states (ESs) is a crucial task in both potential energy surface (PES) studies and excited-state fragmentation approaches. However, it is still a challenging problem in regard to the comparison of complex and highly degenerate systems. Herein, we present a transition orbital projection (TOP) method to calculate the similarity of different ESs based on the configuration vectors of two types of transition densities. It fully considers four significant problems, including phase, hole-particle bijectivity, orbital permutation, and sign of configuration coefficients. TOP state-tracking-based excited-state optimization shows high robustness in several high-symmetric systems, which are difficult to describe with traditional state-tracking approaches. The TOP state-tracking method is expected to be widely applied to the PES of photochemical reactions, ES molecular dynamics to track the diabatic states, and fragmentation approaches for local excitation of large systems.
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Affiliation(s)
- Jiahui Du
- Key Laboratory of Mesoscopic Chemistry of Ministry of Education, Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, People’s Republic of China
| | - Yixuan Ma
- Key Laboratory of Mesoscopic Chemistry of Ministry of Education, Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, People’s Republic of China
| | - Jing Ma
- Key Laboratory of Mesoscopic Chemistry of Ministry of Education, Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, People’s Republic of China
| | - Shuhua Li
- Key Laboratory of Mesoscopic Chemistry of Ministry of Education, Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, People’s Republic of China
| | - Wei Li
- Key Laboratory of Mesoscopic Chemistry of Ministry of Education, Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, People’s Republic of China
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37
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Freixas VM, Keefer D, Tretiak S, Fernandez-Alberti S, Mukamel S. Ultrafast coherent photoexcited dynamics in a trimeric dendrimer probed by X-ray stimulated-Raman signals. Chem Sci 2022; 13:6373-6384. [PMID: 35733898 PMCID: PMC9159119 DOI: 10.1039/d2sc00601d] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Accepted: 04/11/2022] [Indexed: 12/14/2022] Open
Abstract
The photoinduced ultrafast coherent inter-chromophore energy redistribution in a triarylamine trimer is explored using nonadiabatic excited state molecular dynamics followed by simulations of X-ray Raman signals. The nitrogencentered system ensures strong interchromophore interactions and, thus, the presence of coherences. Nevertheless, the multitude of non-deterministic photoinduced pathways during the ultrafast inter-branch migration of the excitation results in random confinement on some branches and, therefore, spatial exciton scrambling and loss of phase information at long times. We show that the vibronic coherence dynamics evolving into the incoherent scrambling mechanism on ultrafast 50 fs timescale, is accurately probed by the TRUECARS X-ray stimulated Raman signal. In combination with previous results, where the technique has revealed long-lived coherences in a rigid heterodimer, the signal is most valuable for detecting ultrafast molecular coherences or their absence. We demonstrate that X-ray Raman spectroscopy is a useful tool in the chemical design of functional molecular building blocks. The photoinduced ultrafast coherent inter-chromophore energy redistribution in a triarylamine trimer is explored using nonadiabatic excited state molecular dynamics followed by simulations of X-ray Raman signals.![]()
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Affiliation(s)
- Victor M Freixas
- Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes/CONICET B1876BXD Bernal Argentina
| | - Daniel Keefer
- Department of Chemistry and Physics and Astronomy, University of California Irvine California 92697-2025 USA
| | - Sergei Tretiak
- Theoretical Division, Los Alamos National Laboratory Los Alamos New Mexico 87545 USA
| | | | - Shaul Mukamel
- Department of Chemistry and Physics and Astronomy, University of California Irvine California 92697-2025 USA
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38
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Chen HT, Chen J, Cofer-Shabica DV, Zhou Z, Athavale V, Medders G, Menger MFSJ, Subotnik JE, Jin Z. Methods to Calculate Electronic Excited-State Dynamics for Molecules on Large Metal Clusters with Many States: Ensuring Fast Overlap Calculations and a Robust Choice of Phase. J Chem Theory Comput 2022; 18:3296-3307. [PMID: 35609255 DOI: 10.1021/acs.jctc.1c01304] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We present an efficient set of methods for propagating excited-state dynamics involving a large number of configuration interaction singles (CIS) or Tamm-Dancoff approximation (TDA) single-reference excited states. Specifically, (i) following Head-Gordon et al., we implement an exact evaluation of the overlap of singly-excited CIS/TDA electronic states at different nuclear geometries using a biorthogonal basis and (ii) we employ a unified protocol for choosing the correct phase for each adiabat at each geometry. For many-electron systems, the combination of these techniques significantly reduces the computational cost of integrating the electronic Schrodinger equation and imposes minimal overhead on top of the underlying electronic structure calculation. As a demonstration, we calculate the electronic excited-state dynamics for a hydrogen molecule scattering off a silver metal cluster, focusing on high-lying excited states, where many electrons can be excited collectively and crossings are plentiful. Interestingly, we find that the high-lying, plasmon-like collective excitation spectrum changes with nuclear dynamics, highlighting the need to simulate non-adiabatic nuclear dynamics and plasmonic excitations simultaneously. In the future, the combination of methods presented here should help theorists build a mechanistic understanding of plasmon-assisted charge transfer and excitation energy relaxation processes near a nanoparticle or metal surface.
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Affiliation(s)
- Hsing-Ta Chen
- Department of Chemistry, University of Pennsylvania, 231 South 34th Street, Philadelphia, Pennsylvania 19104, United States
| | - Junhan Chen
- Department of Chemistry, University of Pennsylvania, 231 South 34th Street, Philadelphia, Pennsylvania 19104, United States
| | - D Vale Cofer-Shabica
- Department of Chemistry, University of Pennsylvania, 231 South 34th Street, Philadelphia, Pennsylvania 19104, United States
| | - Zeyu Zhou
- Department of Chemistry, University of Pennsylvania, 231 South 34th Street, Philadelphia, Pennsylvania 19104, United States
| | - Vishikh Athavale
- Department of Chemistry, University of Pennsylvania, 231 South 34th Street, Philadelphia, Pennsylvania 19104, United States
| | - Gregory Medders
- Department of Chemistry, University of Pennsylvania, 231 South 34th Street, Philadelphia, Pennsylvania 19104, United States
| | - Maximilian F S J Menger
- Zernike Institute for Advanced Materials, Faculty of Science and Engineering, University of Groningen, Nijenborgh 4, Groningen 9747AG, The Netherlands
| | - Joseph E Subotnik
- Department of Chemistry, University of Pennsylvania, 231 South 34th Street, Philadelphia, Pennsylvania 19104, United States
| | - Zuxin Jin
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States
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39
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Qiu J, Lu Y, Wang L. Multilayer Subsystem Surface Hopping Method for Large-Scale Nonadiabatic Dynamics Simulation with Hundreds of Thousands of States. J Chem Theory Comput 2022; 18:2803-2815. [PMID: 35380833 DOI: 10.1021/acs.jctc.2c00130] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
We present a multilayer subsystem surface hopping (MSSH) method to deal with nonadiabatic dynamics in large-scale systems. A small subsystem instead of the full system is adopted for surface hopping and is updated on-the-fly to achieve a reliable description of important adiabatic states and the wave function evolution. Additional subsystems for molecular dynamics and statistical description are introduced to further improve the simulation reliability. The global flux hopping probabilities with optimal state assignments are utilized to treat the complex surface crossings. As demonstrated in a series of one- and two-dimensional Holstein models with up to hundreds of thousands of states, MSSH shows weak parameter dependence in all investigated systems. Especially, the computational costs are reduced by 2-6 orders of magnitude compared to traditional surface hopping simulations in full systems, and size-independent results are achieved with a large time-step size of 2-5 fs. The new method is compatible with different decoherence correction strategies and achieves a much better balance between efficiency and reliability, thus promising for applications in general charge and exciton dynamics simulations.
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Affiliation(s)
- Jing Qiu
- Key Laboratory of Excited-State Materials of Zhejiang Province, Department of Chemistry, Zhejiang University, Hangzhou 310027, China
| | - Yao Lu
- Key Laboratory of Excited-State Materials of Zhejiang Province, Department of Chemistry, Zhejiang University, Hangzhou 310027, China
| | - Linjun Wang
- Key Laboratory of Excited-State Materials of Zhejiang Province, Department of Chemistry, Zhejiang University, Hangzhou 310027, China
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40
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Shu Y, Varga Z, Kanchanakungwankul S, Zhang L, Truhlar DG. Diabatic States of Molecules. J Phys Chem A 2022; 126:992-1018. [PMID: 35138102 DOI: 10.1021/acs.jpca.1c10583] [Citation(s) in RCA: 34] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Quantitative simulations of electronically nonadiabatic molecular processes require both accurate dynamics algorithms and accurate electronic structure information. Direct semiclassical nonadiabatic dynamics is expensive due to the high cost of electronic structure calculations, and hence it is limited to small systems, limited ensemble averaging, ultrafast processes, and/or electronic structure methods that are only semiquantitatively accurate. The cost of dynamics calculations can be made manageable if analytic fits are made to the electronic structure data, and such fits are most conveniently carried out in a diabatic representation because the surfaces are smooth and the couplings between states are smooth scalar functions. Diabatic representations, unlike the adiabatic ones produced by most electronic structure methods, are not unique, and finding suitable diabatic representations often involves time-consuming nonsystematic diabatization steps. The biggest drawback of using diabatic bases is that it can require large amounts of effort to perform a globally consistent diabatization, and one of our goals has been to develop methods to do this efficiently and automatically. In this Feature Article, we introduce the mathematical framework of diabatic representations, and we discuss diabatization methods, including adiabatic-to-diabatic transformations and recent progress toward the goal of automatization.
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Affiliation(s)
- Yinan Shu
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Zoltan Varga
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Siriluk Kanchanakungwankul
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
| | - Linyao Zhang
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States.,School of Energy Science and Engineering, Harbin Institute of Technology, Harbin 150001, P. R. China
| | - Donald G Truhlar
- Department of Chemistry, Chemical Theory Center, and Minnesota Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, United States
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41
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Roosta S, Galami F, Elstner M, Xie W. Efficient Surface Hopping Approach for Modeling Charge Transport in Organic Semiconductors. J Chem Theory Comput 2022; 18:1264-1274. [PMID: 35179894 DOI: 10.1021/acs.jctc.1c00944] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The trajectory surface hopping (TSH) method is nowadays widely applied to study the charge/exciton transport process in organic semiconductors (OSCs). In the present study, we systematically examine the performance of two approximations in the fewest switched surface hopping (FSSH) simulations for charge transport (CT) in several representative OSCs. These approximations include (i) the substitution of the nuclear velocity scaling along the nonadiabatic coupling vector (NCV) by rescaling the hopping probability with the Boltzmann factor (Boltzmann correction (BC)) and (ii) a phenomenological approach to treat the quantum feedback from the electronic system to the nuclear system (implicit charge relaxation (IR)) in the OSCs. We find that charge mobilities computed by FSSH-BC-IR are in very good agreement with the mobilities obtained by standard FSSH simulations with explicit charge relaxation (FSSH-ER), however, at reduced computational cost. A key parameter determining the charge carrier mobility is the reorganization energy, which is sensitively dependent on DFT functionals applied. By employing the IR approximation, the FSSH method allows systematic investigation of the effect of the reorganization energies obtained by different DFT functionals like B3LYP or ωB97XD on CT in OSCs. In comparison to the experiments, FSSH-BC-IR using ωB97XD reorganization energy underestimates mobilities in the low-coupling regime, which may indicate the lack of nuclear quantum effects (e.g., zero point energy (ZPE)) in the simulations. The mobilities obtained by FSSH-BC-IR using the B3LYP reorganization energy agree well with experimental values in 3 orders of magnitude. The accidental agreement may be the consequence of the underestimation of the reorganization energy by the B3LYP functional, which compensates for the neglect of nuclear ZPE in the simulations.
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Affiliation(s)
- Sara Roosta
- Institute of Physical Chemistry, Karlsruhe Institute of Technology, Kaiserstrasse 12, 76131 Karlsruhe, Germany
| | - Farhad Galami
- Institute of Physical Chemistry, Karlsruhe Institute of Technology, Kaiserstrasse 12, 76131 Karlsruhe, Germany
| | - Marcus Elstner
- Institute of Physical Chemistry, Karlsruhe Institute of Technology, Kaiserstrasse 12, 76131 Karlsruhe, Germany.,Institute of Biological Interfaces (IBG-2), Karlsruhe Institute of Technology, 76131 Karlsruhe, Germany
| | - Weiwei Xie
- Key Laboratory of Advanced Energy Materials Chemistry (Ministry of Education), Renewable Energy Conversion and Storage Center, College of Chemistry, Nankai University, Tianjin 300071, China
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42
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Negrin-Yuvero H, Mukazhanova A, Freixas VM, Tretiak S, Sharifzadeh S, Fernandez-Alberti S. Vibronic Photoexcitation Dynamics of Perylene Diimide: Computational Insights. J Phys Chem A 2022; 126:733-741. [PMID: 35084863 DOI: 10.1021/acs.jpca.1c09484] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Perylene diimide (PDI) represents a prototype material for organic optoelectronic devices because of its strong optical absorbance, chemical stability, efficient energy transfer, and optical and chemical tunability. Herein, we analyze in detail the vibronic relaxation of its photoexcitation using nonadiabatic excited-state molecular dynamics simulations. We find that after the absorption of a photon, which excites the electron to the second excited state, S2, induced vibronic dynamics features persistent modulations in the spatial localization of electronic and vibrational excitations. These energy exchanges are dictated by strong vibronic couplings that overcome structural disorders and thermal fluctuations. Specifically, the electronic wavefunction periodically swaps between localizations on the right and left sides of the molecule. Within 1 ps of such dynamics, a nonradiative transition to the lowest electronic state, S1, takes place, resulting in a complete delocalization of the wavefunction. The observed vibronic dynamics emerges following the electronic energy deposition in the direction that excites a combination of two dominant vibrational normal modes. This behavior is maintained even with a chemical substitution that breaks the symmetry of the molecule. We believe that our findings elucidate the nature of the complex dynamics of the optically excited states and, therefore, contribute to the development of tunable functionalities of PDIs and their derivatives.
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Affiliation(s)
- Hassiel Negrin-Yuvero
- Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes/CONICET, Bernal B1876BXD, Argentina
| | - Aliya Mukazhanova
- Division of Materials Science and Engineering, Boston University, Boston, Massachusetts 02215, United States
| | - Victor M Freixas
- Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes/CONICET, Bernal B1876BXD, Argentina
| | - Sergei Tretiak
- Theoretical Division and Center for Integrated Nanotechnologies, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Sahar Sharifzadeh
- Division of Materials Science and Engineering, Boston University, Boston, Massachusetts 02215, United States.,Department of Electrical and Computer Engineering, Boston University, Boston, Massachusetts 02215, United States
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43
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Wang Z, Dong J, Qiu J, Wang L. All-Atom Nonadiabatic Dynamics Simulation of Hybrid Graphene Nanoribbons Based on Wannier Analysis and Machine Learning. ACS APPLIED MATERIALS & INTERFACES 2022; 14:22929-22940. [PMID: 35100503 DOI: 10.1021/acsami.1c22181] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Trajectory surface hopping combined with ab initio electronic structure calculations is a popular and powerful approach for on-the-fly nonadiabatic dynamics simulations. For large systems, however, this remains a significant challenge because of the unaffordable computational cost of large-scale electronic structure calculations. Here, we present an efficient divide-and-conquer approach to construct the system Hamiltonian based on Wannier analysis and machine learning. In detail, the large system under investigation is first decomposed into small building blocks, and then all possible segments formed by building blocks within a cutoff distance are found out. Ab initio molecular dynamics is carried out to generate a sequence of geometries for each equivalent segment with periodicity. The Hamiltonian matrices in the maximum localized Wannier function (MLWF) basis are obtained for all geometries and utilized to train artificial neural networks (ANNs) for the structure-dependent Hamiltonian elements. Taking advantage of the orthogonality and spatial locality of MLWFs, the one-electron Hamiltonian of a large system at arbitrary geometry can be directly constructed by the trained ANNs. As demonstrations, we study charge transport in a zigzag graphene nanoribbon (GNR), a coved GNR, and a series of hybrid GNRs with a state-of-the-art surface hopping method. The interplay between delocalized and localized states is found to determine the electron dynamics in hybrid GNRs. Our approach has successfully studied GNRs with >10 000 atoms, paving the way for efficient and reliable all-atom nonadiabatic dynamics simulation of general systems.
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Affiliation(s)
- Zedong Wang
- Key Laboratory of Excited-State Materials of Zhejiang Province, Department of Chemistry, Zhejiang University, Hangzhou 310027, China
| | - Jiawei Dong
- Key Laboratory of Excited-State Materials of Zhejiang Province, Department of Chemistry, Zhejiang University, Hangzhou 310027, China
| | - Jing Qiu
- Key Laboratory of Excited-State Materials of Zhejiang Province, Department of Chemistry, Zhejiang University, Hangzhou 310027, China
| | - Linjun Wang
- Key Laboratory of Excited-State Materials of Zhejiang Province, Department of Chemistry, Zhejiang University, Hangzhou 310027, China
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44
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Akimov AV. Extending the Time Scales of Nonadiabatic Molecular Dynamics via Machine Learning in the Time Domain. J Phys Chem Lett 2021; 12:12119-12128. [PMID: 34913701 DOI: 10.1021/acs.jpclett.1c03823] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
A novel methodology for direct modeling of long-time scale nonadiabatic dynamics in extended nanoscale and solid-state systems is developed. The presented approach enables forecasting the vibronic Hamiltonians as a direct function of time via machine-learning models trained directly in the time domain. The use of periodic and aperiodic functions that transform time into effective input modes of the artificial neural network is demonstrated to be essential for such an approach to work for both abstract and atomistic models. The best strategies and possible limitations pertaining to the new methodology are explored and discussed. An exemplary direct simulation of unprecedentedly long 20 picosecond trajectories is conducted for a divacancy-containing monolayer black phosphorus system, and the importance of conducting such extended simulations is demonstrated. New insights into the excited states photophysics in this system are presented, including the role of decoherence and model definition.
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Affiliation(s)
- Alexey V Akimov
- Department of Chemistry, University at Buffalo, The State University of New York, Buffalo, New York 14260-3000, United States
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45
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Galindo JF, Freixas VM, Tretiak S, Fernandez-Alberti S. Back-and-Forth Energy Transfer during Electronic Relaxation in a Chlorin-Perylene Dyad. J Phys Chem Lett 2021; 12:10394-10401. [PMID: 34669398 DOI: 10.1021/acs.jpclett.1c03034] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Donor-acceptor dyads represent a practical approach to tuning the photophysical properties of linear conjugated polymers in materials chemistry. Depending on the absorption wavelength, the acceptor and donor roles can be interchanged, and as such, the directionality of the energy transfer can be controlled. Herein, nonadiabatic excited state molecular dynamics simulations have been performed in an arylethylene-linked perylene-chlorin dyad. After an initial photoexcitation at the Soret band of chlorin, we observe an ultrafast sequential electronic relaxation to the lowest excited state. This process is accomplished through an efficient round-trip chlorin-to-perylene-to-chlorin energy transfer. It is characterized by successive intermittent localized and delocalized vibronic dynamics. Nonradiative relaxation takes place mainly through energy transfer events with perylene acting as a "heat sink" through which the nonradiative relaxation is efficiently funneled, and the excess energy is dispersed in a larger space of vibrational degrees of freedom. Thus, our findings suggest the use of donor-acceptor dyads as a useful strategy when one needs to deactivate an electronic excitation.
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Affiliation(s)
- Johan F Galindo
- Department of Chemistry, Universidad Nacional de Colombia, Bogotá 111321, Colombia
| | - Victor M Freixas
- Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes/CONICET, B1876BXD Bernal, Argentina
| | - Sergei Tretiak
- Theoretical Division, Center for Nonlinear Studies (CNLS), and Center for Integrated Nanotechnologies (CINT), Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
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46
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Freixas VM, Wilhelm P, Nelson T, Hinderer F, Höger S, Tretiak S, Lupton JM, Fernandez-Alberti S. Excitation Energy Transfer between bodipy Dyes in a Symmetric Molecular Excitonic Seesaw. J Phys Chem A 2021; 125:8404-8416. [PMID: 34542292 DOI: 10.1021/acs.jpca.1c06332] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We examine the redistribution of energy between electronic and vibrational degrees of freedom that takes place between a π-conjugated oligomer, a phenylene-butadiynylene, and two identical boron-dipyrromethene (bodipy) end-caps using femtosecond transient absorption spectroscopy, single-molecule spectroscopy, and nonadiabatic excited-state molecular dynamics (NEXMD) modeling techniques. The molecular structure represents an excitonic seesaw in that the excitation energy on the oligomer backbone can migrate to either one end-cap or the other, but not to both. The NEXMD simulations closely reproduce the characteristic time scale for redistribution of electronic and vibrational energy of 2.2 ps and uncover the vibrational modes contributing to the intramolecular relaxation. The calculations indicate that the dihedral angle between the bodipy dye and the oligomer change upon excitation of the oligomer. Single-molecule experiments reveal a difference in photoluminescence lifetime of the bodipy dyes depending on whether they are excited by direct absorption or by redistribution of energy from the backbone. This difference in lifetime may be attributed to the difference in dihedral angle. The simulations also suggest that a strong coupling can occur between the two end-caps, giving rise to a reversible shuttling of excitation energy between them. Strong coupling should lead to a pronounced loss in polarization memory of the fluorescence since the oligomer backbone tends to be slightly distorted and the two bodipy transition dipoles have different orientations. A sensitive single-molecule technique is presented to test for such coupling. However, although redistribution of electronic and vibrational energy between the end-caps can occur, it appears to be unidirectional and irreversible, suggesting that an additional localization mechanism is at play which is, as yet, not fully accounted for in the simulations.
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Affiliation(s)
- Victor M Freixas
- Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes/CONICET, B1876BXD Bernal, Argentina
| | - Philipp Wilhelm
- Institut für Angewandte und Experimentelle Physik, Universität Regensburg, Universitätsstrasse 31, 93053 Regensburg, Germany
| | - Tammie Nelson
- Theoretical Division and Center for Integrated Nanotechnologies (CINT), Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Florian Hinderer
- Kekulé-Institut für Organische Chemie und Biochemie, Universität Bonn, Gerhard-Domagk-Straße 1, 53121 Bonn, Germany
| | - Sigurd Höger
- Kekulé-Institut für Organische Chemie und Biochemie, Universität Bonn, Gerhard-Domagk-Straße 1, 53121 Bonn, Germany
| | - Sergei Tretiak
- Theoretical Division and Center for Integrated Nanotechnologies (CINT), Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - John M Lupton
- Institut für Angewandte und Experimentelle Physik, Universität Regensburg, Universitätsstrasse 31, 93053 Regensburg, Germany
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47
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Song H, Nam Y, Keefer D, Garavelli M, Mukamel S, Tretiak S. Nonadiabatic Molecular Dynamics Study of the Relaxation Pathways of Photoexcited Cyclooctatetraene. J Phys Chem Lett 2021; 12:5716-5722. [PMID: 34128675 DOI: 10.1021/acs.jpclett.1c01397] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
In the current study, we present nonadiabatic (NAMD) and adiabatic molecular dynamics simulations of the transition-state dynamics of photoexcited cyclooctatetraene (COT). The equilibrium-state structure and absorption spectra are analyzed using the semiempirical Austin Model 1 potential. The NAMD simulations are obtained by a surface-hopping algorithm. We analyzed in detail an active excited to ground state relaxation pathway accompanied by an S2/S3(D2d) → S1(D8h) → S0(D4h) → S0(D2d) double-bond shifting mechanism. The simulated excitation lifetime is in good agreement with experiment. The first excited singlet state S1 plays a crucial role in the photochemistry. The obtained critical molecular conformations, energy barrier, and transition-state lifetime results will provide a basis for further investigations of the bond-order inversion and photoswitching process of COT.
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Affiliation(s)
- Huajing Song
- Physics and Chemistry of Materials, Theoretical Division, Los Alamos National Laboratory, Los Alamos 87545, New Mexico, United States
| | - Yeonsig Nam
- Department of Chemistry, University of California, Irvine 92697, California, United States
| | - Daniel Keefer
- Department of Chemistry, University of California, Irvine 92697, California, United States
| | - Marco Garavelli
- Department of Industrial Chemistry, "T. Montanari", Università degli Studi di Bologna, Viale del Risorgimento, 4, Bologna 40136, Italy
| | - Shaul Mukamel
- Department of Chemistry, University of California, Irvine 92697, California, United States
- Department of Physics and Astronomy, University of California, Irvine 92697, California, United States
| | - Sergei Tretiak
- Physics and Chemistry of Materials, Theoretical Division, Los Alamos National Laboratory, Los Alamos 87545, New Mexico, United States
- Center for Integrated Nanotechnologies, Los Alamos National Laboratory, Los Alamos 87545, New Mexico, United States
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48
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Alfonso-Hernandez L, Oldani N, Athanasopoulos S, Lupton JM, Tretiak S, Fernandez-Alberti S. Photoinduced Energy Transfer in Linear Guest-Host Chromophores: A Computational Study. J Phys Chem A 2021; 125:5303-5313. [PMID: 34106721 DOI: 10.1021/acs.jpca.1c02644] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Polymer-based guest-host systems represent a promising class of materials for efficient light-emitting diodes. The energy transfer from the polymer host to the guest is the key process in light generation. Therefore, microscopic descriptions of the different mechanisms involved in the energy transfer can contribute to enlighten the basis of the highly efficient light harvesting observed in this kind of materials. Herein, the nature of intramolecular energy transfer in a dye-end-capped conjugated polymer is explored by using atomistic nonadiabatic excited-state molecular dynamics. Linear perylene end-capped (PEC) polyindenofluorenes (PIF), consisting of n (n = 2, 4, and 6) repeat units, i.e., PEC-PIFn oligomers, are considered as model systems. After photoexcitation at the oligomer absorption maximum, an initial exciton becomes self-trapped on one of the monomer units (donors). Thereafter, an efficient ultrafast through-space energy transfer from this unit to the perylene acceptor takes place. We observe that this energy transfer occurs equally well from any monomer unit on the chain. Effective specific vibronic couplings between each monomer and the acceptor are identified. These oligomer → end-cap energy transfer steps do not match with the rates predicted by Förster-type energy transfer. The through-space and through-bond mechanisms are two distinct channels of energy transfer. The former dominates the overall process, whereas the through-bond energy transfer between indenofluorene monomer units along the oligomer backbone only makes a minor contribution.
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Affiliation(s)
- L Alfonso-Hernandez
- Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes/CONICET, B1876BXD Bernal, Argentina
| | - N Oldani
- Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes/CONICET, B1876BXD Bernal, Argentina
| | - S Athanasopoulos
- Departamento de Física, Universidad Carlos III de Madrid, Avenida Universidad 30, 28911 Leganés, Madrid, Spain
| | - J M Lupton
- Institut für Angewandte und Experimentelle Physik, Universität Regensburg, Universitätsstrasse 31, 93053 Regensburg, Germany
| | - S Tretiak
- Theoretical Division, Center for Nonlinear Studies (CNLS), and Center for Integrated Nanotechnologies (CINT), Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - S Fernandez-Alberti
- Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes/CONICET, B1876BXD Bernal, Argentina
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49
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Song H, Freixas VM, Fernandez-Alberti S, White AJ, Zhang Y, Mukamel S, Govind N, Tretiak S. An Ab Initio Multiple Cloning Method for Non-Adiabatic Excited-State Molecular Dynamics in NWChem. J Chem Theory Comput 2021; 17:3629-3643. [PMID: 34014085 DOI: 10.1021/acs.jctc.1c00131] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The recently developed ab initio multiple cloning (AIMC) approach based on the multiconfigurational Ehrenfest (MCE) method provides a powerful and accurate way of describing the excited-state dynamics of molecular systems. The AIMC method is a controlled approximation to nonadiabatic dynamics with a particular strength in the proper description of decoherence effects because of the branching of vibrational wavepackets at a level crossing. Here, we report a new implementation of the AIMC algorithm in the open source NWChem computational chemistry program. The framework combines linear-response time-dependent density functional theory with Ehrenfest mean-field theory to determine the equations of motion for classical trajectories. The multidimensional wave function is decomposed into a superposition of Gaussian coherent states guided by Ehrenfest trajectories (i.e., MCE approach), which can clone with fully quantum mechanical amplitudes and phases. By using an efficient time-derivative based nonadiabatic coupling approach within the AIMC method, all observables are calculated on-the-fly in the nonadiabatic molecular dynamics process. As a representative example, we apply our implementation to study the ultrafast photoinduced electronic and vibrational energy transfer in a pyridine molecule. The effects of the cloning procedure on electronic and vibrational coherence, relaxation and unidirectional energy transfer are discussed. This new AIMC implementation provides a high-level nonadiabatic molecular dynamics framework for simulating photoexcited dynamics in complex molecular systems and experimentally relevant ultrafast spectroscopic probes, such as nonlinear coherent optical and X-ray signals.
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Affiliation(s)
- Huajing Song
- Physics and Chemistry of Materials, Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Victor M Freixas
- Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes/CONICET, B1876BXD, Bernal, Argentina
| | | | - Alexander J White
- Physics and Chemistry of Materials, Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Yu Zhang
- Physics and Chemistry of Materials, Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Shaul Mukamel
- Departments of Chemistry, Physics, and Astronomy, University of California, Irvine, California 92697, United States
| | - Niranjan Govind
- Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Sergei Tretiak
- Physics and Chemistry of Materials, Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States.,Center for Integrated Nanotechnologies, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
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Milovanović B, Novak J, Etinski M, Domcke W, Došlić N. Simulation of UV absorption spectra and relaxation dynamics of uracil and uracil-water clusters. Phys Chem Chem Phys 2021; 23:2594-2604. [PMID: 33475644 DOI: 10.1039/d0cp05618a] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Despite many studies, the mechanisms of nonradiative relaxation of uracil in the gas phase and in aqueous solution are still not fully resolved. Here we combine theoretical UV absorption spectroscopy with nonadiabatic dynamics simulations to identify the photophysical mechanisms that can give rise to experimentally observed decay time constants. We first compute and theoretically assign the electronic spectra of uracil using the second-order algebraic-diagrammatic-construction (ADC(2)) method. The obtained electronic states, their energy differences and state-specific solvation effects are the prerequisites for understanding the photodynamics. We then use nonadiabatic trajectory-surface-hopping dynamics simulations to investigate the photoinduced dynamics of uracil and uracil-water clusters. In contrast to previous studies, we found that a single mechanism - the ethylenic twist around the C[double bond, length as m-dash]C bond - is responsible for the ultrafast component of the nonradiative decay, both in the gas phase and in solution. Very good agreement with the experimentally determined ultrashort decay time constants is obtained.
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Affiliation(s)
| | - Jurica Novak
- Department of Physical Chemistry, Ruđer Bošković Institute, Zagreb, Croatia. and Higher Medical and Biological School, South Ural State University, Chelyabinsk, Russia
| | - Mihajlo Etinski
- University of Belgrade, Faculty of Physical Chemistry, Belgrade, Serbia
| | - Wolfgang Domcke
- Department of Chemistry, Technical University of Munich, Garching, Germany
| | - Nađa Došlić
- Department of Physical Chemistry, Ruđer Bošković Institute, Zagreb, Croatia.
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