1
|
Gleeson R, Aggelund PA, Østergaard FC, Schaltz KF, Sauer SPA. Exploring Alternate Methods for the Calculation of High-Level Vibrational Corrections of NMR Spin-Spin Coupling Constants. J Chem Theory Comput 2024. [PMID: 38299500 DOI: 10.1021/acs.jctc.3c01223] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2024]
Abstract
Traditional nuclear magnetic resonance (NMR) calculations typically treat systems with a Born-Oppenheimer-derived electronic wave function that is solved for a fixed nuclear geometry. One can numerically account for this neglected nuclear motion by averaging over property values for all nuclear geometries with a vibrational wave function and adding this expectation value as a correction to an equilibrium geometry property value. Presented are benchmark coupled-cluster singles and doubles (CCSD) vibrational corrections to spin-spin coupling constants (SSCCs) computed at the level of vibrational second-order perturbation theory (VPT2) using the vibrational averaging driver of the CFOUR program. As CCSD calculations of vibrational corrections are very costly, cheaper electronic structure methods are explored via a newly developed Python vibrational averaging program within the Dalton Project. Namely, results obtained with the second-order polarization propagator approximation (SOPPA) and density functional theory (DFT) with the B3LYP and PBE0 exchange-correlation functionals are compared to the benchmark CCSD//CCSD(T) and experimental values. CCSD//CCSD(T) corrections are also combined with literature CC3 equilibrium geometry values to form the highest-order vibrationally corrected values available (i.e., CC3//CCSD(T) + CCSD//CCSD(T)). CCSD//CCSD(T) statistics showed favorable statistics in comparison to experimental values, albeit at an unfavorably high computational cost. A cheaper CCSD//CCSD(T) + B3LYP method showed quite similar mean absolute deviation (MAD) values as CCSD//CCSD(T), concluding that CCSD//CCSD(T) + B3LYP is optimal in terms of cost and accuracy. With reference to experimental values, a vibrational correction was not worth the cost for all of the other methods tested. Finally, deviation statistics showed that CC3//CCSD(T) + CCSD//CCSD(T) vibrational-corrected equilibrium values deteriorated in comparison to CCSD//CCSD(T) attributed to the use of a smaller basis set or lack of solvation effects for the CC3 equilibrium calculations.
Collapse
Affiliation(s)
- Ronan Gleeson
- Department of Chemistry, University of Copenhagen, 2100 Copenhagen, Denmark
| | - Patrick A Aggelund
- Department of Chemistry, University of Copenhagen, 2100 Copenhagen, Denmark
| | | | - Kasper F Schaltz
- Department of Chemistry, University of Copenhagen, 2100 Copenhagen, Denmark
| | - Stephan P A Sauer
- Department of Chemistry, University of Copenhagen, 2100 Copenhagen, Denmark
| |
Collapse
|
2
|
Quantum Chemical Approaches to the Calculation of NMR Parameters: From Fundamentals to Recent Advances. MAGNETOCHEMISTRY 2022. [DOI: 10.3390/magnetochemistry8050050] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Quantum chemical methods for the calculation of indirect NMR spin–spin coupling constants and chemical shifts are always in progress. They never stay the same due to permanently developing computational facilities, which open new perspectives and create new challenges every now and then. This review starts from the fundamentals of the nonrelativistic and relativistic theory of nuclear magnetic resonance parameters, and gradually moves towards the discussion of the most popular common and newly developed methodologies for quantum chemical modeling of NMR spectra.
Collapse
|
3
|
Rusakova IL, Rusakov YY. Quantum chemical calculations of 77 Se and 125 Te nuclear magnetic resonance spectral parameters and their structural applications. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2021; 59:359-407. [PMID: 33095923 DOI: 10.1002/mrc.5111] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2020] [Revised: 09/01/2020] [Accepted: 10/07/2020] [Indexed: 06/11/2023]
Abstract
An accurate quantum chemical (QC) modeling of 77 Se and 125 Te nuclear magnetic resonance (NMR) spectra is deeply involved in the NMR structural assignment for selenium and tellurium compounds that are of utmost importance both in organic and inorganic chemistry nowadays due to their huge application potential in many fields, like biology, medicine, and metallurgy. The main interest of this review is focused on the progress in QC computations of 77 Se and 125 Te NMR chemical shifts and indirect spin-spin coupling constants involving these nuclei. Different computational methodologies that have been used to simulate the NMR spectra of selenium and tellurium compounds since the middle of the 1990s are discussed with a strong emphasis on their accuracy. A special accent is placed on the calculations resorting to the relativistic methodologies, because taking into account the relativistic effects appreciably influences the precision of NMR calculations of selenium and, especially, tellurium compounds. Stereochemical applications of quantum chemical calculations of 77 Se and 125 Te NMR parameters are discussed so as to exemplify the importance of integrated approach of experimental and computational NMR techniques.
Collapse
Affiliation(s)
- Irina L Rusakova
- A. E. Favorsky Irkutsk Institute of Chemistry, Siberian Branch of the Russian Academy of Sciences, Irkutsk, Russian Federation
| | - Yuriy Yu Rusakov
- A. E. Favorsky Irkutsk Institute of Chemistry, Siberian Branch of the Russian Academy of Sciences, Irkutsk, Russian Federation
| |
Collapse
|
4
|
Gräfenstein J. Efficient calculation of NMR isotopic shifts: Difference-dedicated vibrational perturbation theory. J Chem Phys 2019; 151:244120. [PMID: 31893883 DOI: 10.1063/1.5134538] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
We present difference-dedicated second-order vibrational perturbation theory (VPT2) as an efficient method for the computation of nuclear magnetic resonance (NMR) isotopic shifts, which reflect the geometry dependence of the NMR property in combination with different vibration patterns of two isotopologues. Conventional calculations of isotopic shifts, e.g., by standard VPT2, require scanning the geometry dependence over the whole molecule, which becomes expensive rapidly as the molecule size increases. In DD-VPT2, this scan can be restricted to a small region around the substitution site. At the heart of DD-VPT2 is a set of localized vibration modes common to the two isotopologues and designed such that the difference between the vibration patterns is caught by a small subset of them (usually fewer than 10). We tested the DD-VPT2 method for a series of molecules with increasing size and found that this method provides results with the same quality as VPT2 and in good agreement with the experiment, with computational savings up to 95% and less numerical instabilities. The method is easy to automatize and straightforward to generalize to other molecular properties.
Collapse
Affiliation(s)
- Jürgen Gräfenstein
- Department of Chemistry and Molecular Biology, University of Gothenburg, SE-412 96 Göteborg, Sweden
| |
Collapse
|
5
|
Schnack-Petersen AK, Haase PAB, Faber R, Provasi PF, Sauer SPA. RPA(D) and HRPA(D): Two new models for calculations of NMR indirect nuclear spin-spin coupling constants. J Comput Chem 2019; 39:2647-2666. [PMID: 30515901 DOI: 10.1002/jcc.25712] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2018] [Revised: 08/26/2018] [Accepted: 09/23/2018] [Indexed: 01/21/2023]
Abstract
In this article, the RPA(D) and HRPA(D) models for the calculation of linear response functions are presented. The performance of the new RPA(D) and HRPA(D) models is compared to the performance of the established RPA, HRPA, and SOPPA models in calculations of indirect nuclear spin-spin coupling constants using the CCSD model as a reference. The doubles correction offers a significant improvement on both the RPA and HRPA models; however, the improvement is more dramatic in the case of the RPA model. For all coupling types investigated in this study, the results obtained using the HRPA(D) model are comparable in accuracy to those given by the SOPPA model, while requiring between 30% and 90% of the calculation time needed for SOPPA. The RPA(D) model, while of slightly lower accuracy compared to the CCSD model than HRPA(D), offered calculation times of only approximately 25% of those required for SOPPA for all the investigated molecules. © 2018 Wiley Periodicals, Inc.
Collapse
Affiliation(s)
| | - Pi A B Haase
- Van Swinderen Institute, University of Groningen, Groningen, The Netherlands
| | - Rasmus Faber
- Department of Chemistry, Technical University of Denmark, Kgs. Lyngby, Denmark
| | - Patricio F Provasi
- Department of Physics-IMIT, Northeastern University-CONICET, Corrientes, Argentina
| | - Stephan P A Sauer
- Department of Chemistry, University of Copenhagen, Copenhagen, Denmark
| |
Collapse
|
6
|
Krivdin LB. Theoretical calculations of carbon-hydrogen spin-spin coupling constants. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2018; 108:17-73. [PMID: 30538048 DOI: 10.1016/j.pnmrs.2018.10.002] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2018] [Revised: 10/09/2018] [Accepted: 10/11/2018] [Indexed: 06/09/2023]
Abstract
Structural applications of theoretical calculations of carbon-hydrogen spin-spin coupling constants are reviewed covering papers published mainly during the last 10-15 years with a special emphasis on the most notable studies of hybridization, substitution and stereoelectronic effects together with the investigation of hydrogen bonding and intermolecular interactions. The wide scope of different applications of calculated carbon-hydrogen couplings in the structural elucidation of particular classes of organic and bioorganic molecules is reviewed, concentrating mainly on saturated, unsaturated, aromatic and heteroaromatic compounds and their functional derivatives, as well as on natural compounds and carbohydrates. The review is dedicated to Professor Emeritus Michael Barfield in view of his invaluable pioneering contribution to this field.
Collapse
Affiliation(s)
- Leonid B Krivdin
- A.E. Favorsky Irkutsk Institute of Chemistry, Siberian Branch of the Russian Academy of Sciences, Favorsky St. 1, 664033 Irkutsk, Russia.
| |
Collapse
|
7
|
Caputo MC, Alkorta I, Provasi PF, Sauer SPA. Analysis of the interactions in FCCF:(H 2O) and FCCF:(H 2O) 2 complexes through the study of their indirect spin–spin coupling constants. Mol Phys 2018. [DOI: 10.1080/00268976.2018.1488006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- María Cristina Caputo
- Departamento de Física, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires y IFIBA – CONICET-UBA, Ciudad Universitaria, Buenos Aires, Argentina
| | - Ibon Alkorta
- Instituto de Química Médica (C.S.I.C.), Madrid, Spain
| | - Patricio F. Provasi
- Department of Physics – IMIT – CONICET, Northeastern University, Corrientes, Argentina
| | | |
Collapse
|
8
|
Spin–spin coupling constants in
$$\hbox {HC}{\equiv }\hbox {CXH}_3$$
HC
≡
CXH
3
molecules;
$$\hbox {X}{=}\hbox {C}$$
X
=
C
, Si, Ge, Sn and Pb. Theor Chem Acc 2018. [DOI: 10.1007/s00214-018-2215-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
|
9
|
Faber R, Sauer SPA. On the convergence of the ccJ-pVXZ and pcJ-n basis sets in CCSD calculations of nuclear spin–spin coupling constants: some difficult cases. Theor Chem Acc 2018. [DOI: 10.1007/s00214-018-2217-0] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
|
10
|
Ganina TA, Cheshkov DA, Chertkov VA. Dynamic structure of organic compounds in solution according to NMR data and quantum chemical calculations: II. Styrene. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2017. [DOI: 10.1134/s1070428017010043] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
11
|
Faber R, Sauer SPA, Gauss J. Importance of Triples Contributions to NMR Spin-Spin Coupling Constants Computed at the CC3 and CCSDT Levels. J Chem Theory Comput 2017; 13:696-709. [PMID: 27992184 DOI: 10.1021/acs.jctc.6b01003] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We present the first analytical implementation of CC3 second derivatives using the spin-unrestricted approach. This allows, for the first time, the calculation of nuclear spin-spin coupling constants (SSCC) relevant to NMR spectroscopy at the CC3 level of theory in a fully analytical manner. CC3 results for the SSCCs of a number of small molecules and their fluorine substituted derivatives are compared with the corresponding coupled cluster singles and doubles (CCSD) results obtained using specialized basis sets. For one-bond couplings the change when going from CCSD to CC3 is typically 1-3%, but much higher corrections were found for 1JCN in FCN, 15.7%, and 1JOF in OF2, 6.4%. The changes vary significantly in the case of multibond couplings, with differences of up to 10%, and even 13.6% for 3JFH in fluoroacetylene. Calculations at the coupled cluster singles, doubles, and triples (CCSDT) level indicate that the most important contributions arising from connected triple excitations in the coupled cluster expansion are accounted for at the CC3 level. Thus, we believe that the CC3 method will become the standard approach for the calculation of reference values of nuclear spin-spin coupling constants.
Collapse
Affiliation(s)
- Rasmus Faber
- Department of Chemistry, University of Copenhagen , Universitetsparken 5, 2100 Copenhagen Ø, Denmark
| | - Stephan P A Sauer
- Department of Chemistry, University of Copenhagen , Universitetsparken 5, 2100 Copenhagen Ø, Denmark
| | - Jürgen Gauss
- Institut für Physikalische Chemie, Universität Mainz , 55099 Mainz, Germany
| |
Collapse
|
12
|
Ganina TA, Chertkov VA. Dynamic structure of organic compounds in solution according to NMR data and quantum mechanical calculations: I. Soman. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2016. [DOI: 10.1134/s1070428016040023] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
13
|
Faber R, Kaminsky J, Sauer SPA. Rovibrational and Temperature Effects in Theoretical Studies of NMR Parameters. GAS PHASE NMR 2016. [DOI: 10.1039/9781782623816-00218] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
The demand for high precision calculations of NMR shieldings (or their related values, chemical shifts δ) and spin–spin coupling constants facilitating and supporting detailed interpretations of NMR spectra increases hand in hand with the development of computational techniques and hardware resources. Highly sophisticated calculations including even relativistic effects are nowadays possible for these properties. However, NMR parameters depend not only on molecular structure and environment but also on molecular flexibility and temperature and the apparent success of theoretical predictions for molecular equilibrium geometries creates a demand for zero-point vibrational and temperature corrections. In this chapter we describe briefly the theory behind rovibrational corrections and review then some important contributions to this field.
Collapse
Affiliation(s)
- Rasmus Faber
- Department of Chemistry, University of Copenhagen Universitetsparken 5 DK-2100 Copenhagen Ø Denmark
| | - Jakub Kaminsky
- Department of Molecular Spectroscopy, Institute of Organic Chemistry and Biochemistry 166 10 Prague Czech Republic
| | - Stephan P. A. Sauer
- Department of Chemistry, University of Copenhagen Universitetsparken 5 DK-2100 Copenhagen Ø Denmark
| |
Collapse
|
14
|
Zarycz MNC, Provasi PF, Sauer SPA. On the truncation of the number of excited states in density functional theory sum-over-states calculations of indirect spin spin coupling constants. J Chem Phys 2015; 143:244107. [PMID: 26723651 DOI: 10.1063/1.4937572] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
It is investigated, whether the number of excited (pseudo)states can be truncated in the sum-over-states expression for indirect spin-spin coupling constants (SSCCs), which is used in the Contributions from Localized Orbitals within the Polarization Propagator Approach and Inner Projections of the Polarization Propagator (IPPP-CLOPPA) approach to analyzing SSCCs in terms of localized orbitals. As a test set we have studied the nine simple compounds, CH4, NH3, H2O, SiH4, PH3, SH2, C2H2, C2H4, and C2H6. The excited (pseudo)states were obtained from time-dependent density functional theory (TD-DFT) calculations with the B3LYP exchange-correlation functional and the specialized core-property basis set, aug-cc-pVTZ-J. We investigated both how the calculated coupling constants depend on the number of (pseudo)states included in the summation and whether the summation can be truncated in a systematic way at a smaller number of states and extrapolated to the total number of (pseudo)states for the given one-electron basis set. We find that this is possible and that for some of the couplings it is sufficient to include only about 30% of the excited (pseudo)states.
Collapse
Affiliation(s)
- M Natalia C Zarycz
- Department of Physics, University of Northeastern - CONICET, Av. Libertad 5500, Corrientes W3404AAS, Argentina
| | - Patricio F Provasi
- Department of Physics, University of Northeastern - CONICET, Av. Libertad 5500, Corrientes W3404AAS, Argentina
| | - Stephan P A Sauer
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| |
Collapse
|
15
|
Jin Y, Perera A, Bartlett RJ. Spectroscopic analysis of diphosphatriazolate anion (P2N3−) by coupled-cluster methods as a step toward N5−. Chem Phys Lett 2015. [DOI: 10.1016/j.cplett.2015.10.014] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
|
16
|
Zarycz MNC, Sauer SPA, Provasi PF. Communication: Localized molecular orbital analysis of the effect of electron correlation on the anomalous isotope effect in the NMR spin-spin coupling constant in methane. J Chem Phys 2014; 141:151101. [PMID: 25338873 DOI: 10.1063/1.4897625] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We discuss the effect of electron correlation on the unexpected differential sensitivity (UDS) in the (1)J(C-H) coupling constant of CH4 using a decomposition into contributions from localized molecular orbitals and compare with the (1)J(N-H) coupling constant in NH3. In particular, we discuss the well known fact that uncorrelated coupled Hartree-Fock (CHF) calculations are not able to reproduce the UDS in methane. For this purpose we have implemented for the first time a localized molecular orbital analysis for the second order polarization propagator approximation with coupled cluster singles and doubles amplitudes--SOPPA(CCSD) in the DALTON program. Comparing the changes in the localized orbital contributions at the correlated SOPPA and SOPPA(CCSD) levels and at the uncorrelated CHF level, we find that the latter overestimates the effect of stretching the bond between the coupled atoms on the contribution to the coupling from the localized bonding orbital between these atoms. This disturbs the subtle balance between the molecular orbital contributions, which lead to the UDS in methane.
Collapse
Affiliation(s)
- M Natalia C Zarycz
- Department of Physics, University of Northeastern - CONICET, Av. Libertad 5500, Corrientes W3404AAS, Argentina
| | - Stephan P A Sauer
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Patricio F Provasi
- Department of Physics, University of Northeastern - CONICET, Av. Libertad 5500, Corrientes W3404AAS, Argentina
| |
Collapse
|
17
|
Díez E, Esteban AL, San Fabián J, Galache MP, Casanueva J, Contreras RH. Intramolecular surfaces for vicinal proton–proton coupling constants 3JHH. Mol Phys 2014. [DOI: 10.1080/00268976.2014.891768] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
|
18
|
Eriksen JJ, Solanko LM, Nåbo LJ, Wüstner D, Sauer SP, Kongsted J. The Second-Order Polarization Propagator Approximation (SOPPA) method coupled to the polarizable continuum model. COMPUT THEOR CHEM 2014. [DOI: 10.1016/j.comptc.2014.02.034] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
|
19
|
San Fabián J, García de la Vega JM, Suardíaz R, Fernández-Oliva M, Pérez C, Crespo-Otero R, Contreras RH. Computational NMR coupling constants: shifting and scaling factors for evaluating 1JCH. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2013; 51:775-787. [PMID: 24123317 DOI: 10.1002/mrc.4014] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2013] [Revised: 08/28/2013] [Accepted: 09/02/2013] [Indexed: 06/02/2023]
Abstract
Optimized shifting and/or scaling factors for calculating one-bond carbon-hydrogen spin-spin coupling constants have been determined for 35 combinations of representative functionals (PBE, B3LYP, B3P86, B97-2 and M06-L) and basis sets (TZVP, HIII-su3, EPR-III, aug-cc-pVTZ-J, ccJ-pVDZ, ccJ-pVTZ, ccJ-pVQZ, pcJ-2 and pcJ-3) using 68 organic molecular systems with 88 (1)JCH couplings including different types of hybridized carbon atoms. Density functional theory assessment for the determination of (1)JCH coupling constants is examined, comparing the computed and experimental values. The use of shifting constants for obtaining the calculated coupling improves substantially the results, and most models become qualitatively similar. Thus, for the whole set of couplings and for all approaches excluding those using the M06 functional, the root-mean-square deviations lie between 4.7 and 16.4 Hz and are reduced to 4-6.5 Hz when shifting constants are considered. Alternatively, when a specific rovibrational contribution of 5 Hz is subtracted from the experimental values, good results are obtained with PBE, B3P86 and B97-2 functionals in combination with HIII-su3, aug-cc-pVTZ-J and pcJ-2 basis sets.
Collapse
Affiliation(s)
- J San Fabián
- Departamento de Química Física Aplicada, Facultad de Ciencias, Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | | | | | | | | | | | | |
Collapse
|
20
|
Rusakov YY, Krivdin LB. Modern quantum chemical methods for calculating spin–spin coupling constants: theoretical basis and structural applications in chemistry. RUSSIAN CHEMICAL REVIEWS 2013. [DOI: 10.1070/rc2013v082n02abeh004350] [Citation(s) in RCA: 99] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
|
21
|
Rusakova IL, Krivdin LB, Rusakov YY, Trofimov AB. Algebraic-diagrammatic construction polarization propagator approach to indirect nuclear spin–spin coupling constants. J Chem Phys 2012; 137:044119. [DOI: 10.1063/1.4737181] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
|
22
|
Chertkov AV, Shestakova AK, Chertkov VA. Synthesis and NMR spectra of tetrahydrofuran-2-13C. Chem Heterocycl Compd (N Y) 2012. [DOI: 10.1007/s10593-012-1008-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
|
23
|
Kjaer H, Nielsen MR, Pagola GI, Ferraro MB, Lazzeretti P, P. A. Sauer S. Nuclear magnetic resonance J coupling constant polarizabilities of hydrogen peroxide: A basis set and correlation study. J Comput Chem 2012; 33:1845-53. [DOI: 10.1002/jcc.23013] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2011] [Revised: 04/03/2012] [Accepted: 04/19/2012] [Indexed: 11/10/2022]
|
24
|
Sneskov K, Stanton JF. Effects of vibrational averaging on coupled cluster calculations of spin–spin coupling constants for hydrocarbons. Mol Phys 2012. [DOI: 10.1080/00268976.2012.678904] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- Kristian Sneskov
- a The Lundbeck Foundation Center for Theoretical Chemistry and Department of Chemistry , Aarhus University , Langelandsgade 140, DK-8000 Aarhus C , Denmark
| | - John F. Stanton
- b Institute for Theoretical Chemistry and Department of Chemistry and Biochemistry , The University of Texas at Austin , Austin , Texas 78712-0165 , USA
| |
Collapse
|
25
|
Kupka T, Nieradka M, Stachów M, Pluta T, Nowak P, Kjær H, Kongsted J, Kaminsky J. Basis Set Convergence of Indirect Spin–Spin Coupling Constants in the Kohn–Sham Limit for Several Small Molecules. J Phys Chem A 2012; 116:3728-38. [DOI: 10.1021/jp212588h] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Teobald Kupka
- Faculty of Chemistry, University of Opole, 45-052 Opole, Poland
| | | | - Michał Stachów
- Faculty of Chemistry, University of Opole, 45-052 Opole, Poland
| | - Tadeusz Pluta
- Institute of Chemistry, University of Silesia, 40-007 Katowice, Poland
| | - Piotr Nowak
- Technical University of Opole, Opole, Poland
| | - Hanna Kjær
- Department of Chemistry, University of Copenhagen, DK-2100 Copenhagen, Denmark
| | - Jacob Kongsted
- Department of Physics, Chemistry
and Pharmacy, University of Southern Denmark, DK-5230 Odense, Denmark
| | - Jakub Kaminsky
- Institute of Organic Chemistry and Biochemistry, 166 10 Prague, Czech Republic
| |
Collapse
|
26
|
Helgaker T, Coriani S, Jørgensen P, Kristensen K, Olsen J, Ruud K. Recent Advances in Wave Function-Based Methods of Molecular-Property Calculations. Chem Rev 2012; 112:543-631. [DOI: 10.1021/cr2002239] [Citation(s) in RCA: 463] [Impact Index Per Article: 38.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Trygve Helgaker
- Centre for Theoretical and Computational Chemistry, Department of Chemistry, University of Oslo, P.O. Box 1033 Blindern, N-0315 Oslo, Norway
| | - Sonia Coriani
- Dipartimento di Scienze Chimiche e Farmaceutiche, Università degli Studi di Trieste, Via Giorgieri 1, I-34127 Trieste, Italy
| | - Poul Jørgensen
- Lundbeck Center for Theoretical Chemistry, Department of Chemistry, Aarhus University, 8000 Aarhus C, Denmark
| | - Kasper Kristensen
- Lundbeck Center for Theoretical Chemistry, Department of Chemistry, Aarhus University, 8000 Aarhus C, Denmark
| | - Jeppe Olsen
- Lundbeck Center for Theoretical Chemistry, Department of Chemistry, Aarhus University, 8000 Aarhus C, Denmark
| | - Kenneth Ruud
- Centre for Theoretical and Computational Chemistry, Department of Chemistry, University of Tromsø, N-9037 Tromsø, Norway
| |
Collapse
|
27
|
Faber R, Sauer SPA. On the discrepancy between theory and experiment for the F–F spin–spin coupling constant of difluoroethyne. Phys Chem Chem Phys 2012; 14:16440-7. [DOI: 10.1039/c2cp42198d] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
28
|
Chernyshev KA, Krivdin LB. Quantum-chemical calculations of NMR chemical shifts of organic molecules: II. Influence of medium, relativistic effects, and vibrational corrections on phosphorus magnetic shielding constants in the simplest phosphines and phosphine chalcogenides. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2011. [DOI: 10.1134/s1070428011030043] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
29
|
|
30
|
Benchmarking SOPPA(CC2) for the calculation of indirect nuclear spin–spin coupling constants: Carbocycles. Chem Phys 2011. [DOI: 10.1016/j.chemphys.2011.01.006] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
|
31
|
Kjaer H, Sauer SPA, Kongsted J. Benchmarking NMR indirect nuclear spin-spin coupling constants: SOPPA, SOPPA(CC2), and SOPPA(CCSD) versus CCSD. J Chem Phys 2011; 133:144106. [PMID: 20949986 DOI: 10.1063/1.3483197] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Accurate calculations of NMR indirect nuclear spin-spin coupling constants require especially optimized basis sets and correlated wave function methods such as CCSD or SOPPA(CCSD). Both methods scale as N(6), where N is the number of orbitals, which prevents routine applications to molecules with more than 10-15 nonhydrogen atoms. We have therefore developed a modification of the SOPPA(CCSD) method in which the CCSD singles and doubles amplitudes are replaced by CC2 singles and doubles amplitudes. This new method, called SOPPA(CC2), scales only as N(5), like the original SOPPA-method. The performance of the SOPPA(CC2) method for the calculation of indirect nuclear spin-spin coupling constants is compared to SOPPA and SOPPA(CCSD) employing a set of benchmark molecules. We also investigate the basis set dependence by employing three different basis sets optimized for spin-spin coupling constants, namely the HuzIV-su4, ccJ-pVTZ, and ccJ-pVQZ basis sets. The results of the corresponding CCSD calculations are used as a theoretical reference.
Collapse
Affiliation(s)
- Hanna Kjaer
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark.
| | | | | |
Collapse
|
32
|
Provasi PF, Sauer SPA. Optimized basis sets for the calculation of indirect nuclear spin-spin coupling constants involving the atoms B, Al, Si, P, and Cl. J Chem Phys 2010; 133:054308. [PMID: 20707533 DOI: 10.1063/1.3465553] [Citation(s) in RCA: 73] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The aug-cc-pVTZ-J series of basis sets for indirect nuclear spin-spin coupling constants has been extended to the atoms B, Al, Si, P, and Cl. The basis sets were obtained according to the scheme previously described by Provasi et al. [J. Chem. Phys. 115, 1324 (2001)]. First, the completely uncontracted correlation consistent aug-cc-pVTZ basis sets were extended with four tight s and three tight d functions. Second, the s and p basis functions were contracted with the molecular orbital coefficients of self-consistent-field calculations performed with the uncontracted basis sets on the simplest hydrides of each atom. As a first illustration, we have calculated the one-bond indirect spin-spin coupling constants in BH(4)(-), BF, AlH, AlF, SiH(4), SiF(4), PH(3), PF(3), H(2)S, SF(6), HCl, and ClF at the level of density functional theory using the Becke three parameter Lee-Yang-Parr and the second order polarization propagator approximation with coupled cluster singles and doubles amplitudes.
Collapse
Affiliation(s)
- Patricio F Provasi
- Department of Physics, University of Northeastern, Av. Libertad 5500, W 3404 AAS Corrientes, Argentina.
| | | |
Collapse
|
33
|
Yachmenev A, Yurchenko SN, Paidarová I, Jensen P, Thiel W, Sauer SPA. Thermal averaging of the indirect nuclear spin-spin coupling constants of ammonia: The importance of the large amplitude inversion mode. J Chem Phys 2010; 132:114305. [DOI: 10.1063/1.3359850] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
34
|
Rusakov YY, Krivdin LB, Sauer SPA, Levanova EP, Levkovskaya GG. Structural trends of 77Se-1H spin-spin coupling constants and conformational behavior of 2-substituted selenophenes. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2010; 48:44-52. [PMID: 19877126 DOI: 10.1002/mrc.2537] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Experimental measurements and second-order polarization propagator approach (SOPPA) calculations of (77)Se-(1)H spin-spin coupling constants together with theoretical energy-based conformational analysis in the series of 2-substituted selenophenes have been carried out. A new basis set optimized for the calculation of (77)Se-(1)H spin-spin coupling constants has been introduced by extending the aug-cc-pVTZ-J basis for selenium. Most of the spin-spin coupling constants under study, especially vicinal (77)Se-(1)H couplings, demonstrated a remarkable stereochemical behavior with respect to the internal rotation of the substituent in the 2-position of the selenophene ring, which is of major importance in the stereochemical studies of the related organoselenium compounds.
Collapse
Affiliation(s)
- Yury Yu Rusakov
- A. E. Favorsky Irkutsk Institute of Chemistry, Siberian Branch of the Russian Academy of Sciences, Favorsky St. 1, 664033 Irkutsk, Russia
| | | | | | | | | |
Collapse
|
35
|
Møgelhøj A, Aidas K, Mikkelsen KV, Sauer SPA, Kongsted J. Prediction of spin-spin coupling constants in solution based on combined density functional theory/molecular mechanics. J Chem Phys 2009; 130:134508. [PMID: 19355752 DOI: 10.1063/1.3098255] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We present theory and implementation of calculation of spin-spin coupling constants within combined quantum mechanics/molecular mechanics methods. Special attention is given to the role of explicit solvent polarization as well as the molecular consequences due to hydrogen bonding. The model is generally applicable but is here implemented for the case of density functional theory. First applications to liquid water and acetylene in aqueous solution are presented. Good agreement between theory and experiment is obtained in both cases, thereby showing the strength of our approach. Finally, spin-spin coupling constants across hydrogen bonds are discussed considering for the first time the role of an explicit solvent on this class of spin-spin couplings.
Collapse
Affiliation(s)
- Andreas Møgelhøj
- Department of Chemistry, H. C. Ørsted Institute, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | | | | | | | | |
Collapse
|
36
|
Kleinpeter E, Frank A. Quantification of the Push−Pull Effect in Substituted Alkynes. Evaluation of ±I/±M Substituent Effects in Terms of C≡C Bond Length Variation. J Phys Chem A 2009; 113:6774-8. [DOI: 10.1021/jp9024359] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Erich Kleinpeter
- Chemisches Institut, Universität Potsdam, Karl-Liebknecht-Strasse 24-25, D-14476 Potsdam (Golm), Germany
| | - Andrea Frank
- Chemisches Institut, Universität Potsdam, Karl-Liebknecht-Strasse 24-25, D-14476 Potsdam (Golm), Germany
| |
Collapse
|
37
|
Provasi PF, A. Sauer SP. Analysis of isotope effects in NMR one-bond indirect nuclear spin–spin coupling constants in terms of localized molecular orbitals. Phys Chem Chem Phys 2009; 11:3987-95. [DOI: 10.1039/b819376b] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
|
38
|
Hansen MB, Kongsted J, Toffoli D, Christiansen O. Vibrational Contributions to Indirect Spin−Spin Coupling Constants Calculated via Variational Anharmonic Approaches. J Phys Chem A 2008; 112:8436-45. [DOI: 10.1021/jp804306s] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Mikkel B. Hansen
- The Lundbeck Foundation Center for Theoretical Chemistry and Center for Oxygen Microscopy and Imaging, Department of Chemistry, University of Århus, Langelandsgade 140, DK-8000 Århus C, Denmark, and Department of Theoretical Chemistry, Chemical Center, University of Lund, P.O. Box 124, S-221 00 Lund, Sweden
| | - Jacob Kongsted
- The Lundbeck Foundation Center for Theoretical Chemistry and Center for Oxygen Microscopy and Imaging, Department of Chemistry, University of Århus, Langelandsgade 140, DK-8000 Århus C, Denmark, and Department of Theoretical Chemistry, Chemical Center, University of Lund, P.O. Box 124, S-221 00 Lund, Sweden
| | - Daniele Toffoli
- The Lundbeck Foundation Center for Theoretical Chemistry and Center for Oxygen Microscopy and Imaging, Department of Chemistry, University of Århus, Langelandsgade 140, DK-8000 Århus C, Denmark, and Department of Theoretical Chemistry, Chemical Center, University of Lund, P.O. Box 124, S-221 00 Lund, Sweden
| | - Ove Christiansen
- The Lundbeck Foundation Center for Theoretical Chemistry and Center for Oxygen Microscopy and Imaging, Department of Chemistry, University of Århus, Langelandsgade 140, DK-8000 Århus C, Denmark, and Department of Theoretical Chemistry, Chemical Center, University of Lund, P.O. Box 124, S-221 00 Lund, Sweden
| |
Collapse
|
39
|
Sauer SPA, Provasi PF. The Anomalous Deuterium Isotope Effect in the NMR Spectrum of Methane: An Analysis in Localized Molecular Orbitals. Chemphyschem 2008; 9:1259-61. [DOI: 10.1002/cphc.200800119] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
|
40
|
Golubev NS, Melikova SM, Shchepkin D, Shenderovich IG, Tolstoy PM, Denisov GS. Interpretation of Hydrogen/Deuterium Isotope Effects on NMR Chemical Shifts of [FHF]− Ion Based on Calculations of Nuclear Magnetic Shielding Tensor Surface. ACTA ACUST UNITED AC 2008. [DOI: 10.1524/zpch.217.12.1549.20471] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Abstract
Using ab initio calculations of 1H, 19F magnetic shielding tensors of hydrogen difluoride ion as the functions of three coordinates of symmetry, an attempt is made to estimate the contributions of different vibrational isotope effects to H/D NMR isotope shifts referred in the literature. It is shown that the contributions of the amplitudes of proton stretching and bending vibrations dominate whereas the contribution of the totally symmetric vibration can be neglected. Different signs of the H/D isotope effects on hydron and fluorine chemical shifts are caused by very strong angle dependence of the fluorine magnetic shielding. The agreement of the calculated and measured values is nearly quantitative. An unusually strong paramagnetic deshielding of hydrogen for the equilibrium geometry of the [FHF]− ion is noted.
Collapse
|
41
|
Neto AC, Santos FPD, Paula AS, Tormena CF, Rittner R. Density functionals for calculating NMR 1JCH coupling constants in electron-rich systems. Chem Phys Lett 2008. [DOI: 10.1016/j.cplett.2008.01.052] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
|
42
|
San Fabián J, Díez E, García de la Vega JM, Suardíaz R. Approximating correlation effects in multiconfigurational self-consistent field calculations of spin-spin coupling constants. J Chem Phys 2008; 128:084108. [PMID: 18315034 DOI: 10.1063/1.2834210] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- J San Fabián
- Departamento de Química Física Aplicada, Facultad de Ciencias, Universidad Autónoma de Madrid, E-28049 Madrid, Spain.
| | | | | | | |
Collapse
|
43
|
Paidarová I, Sauer SPA. A Comparison of Møller-Plesset and Coupled Cluster Linear Response Theory Methods for the Calculation of Dipole Oscillator Strength Sum Rules and C6 Dispersion Coefficients. ACTA ACUST UNITED AC 2008. [DOI: 10.1135/cccc20081415] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Four correlated linear response theory methods - the second order polarization propagator approximation (SOPPA), the second order polarization propagator approximation with coupled cluster singles and doubles amplitudes, SOPPA(CCSD), the CC2 and coupled cluster singles doubles (CCSD) linear response theory - were used to determine the dipole oscillator strength sum rules of the hydrogen halides HX (with X = F, Cl, Br and I) and the C6 dispersion coefficient for all pairs of interacting HX molecules via numerical integration of the Casimir-Polder formula. The dependence of the polarizabilities, their frequency dependence and the C6 coefficients on the level of correlation and the dependence of the C6 coefficients on the two intramolecular bond lengths were studied.
Collapse
|
44
|
Krivdin LB, Khutsishvili SS, Shemyakina OA, Mal'kina AG, Trofimov BA, Contreras RH. Stereochemical study of iminodihydrofurans based on experimental measurements and SOPPA calculations of (13)C-(13)C spin-spin coupling constants. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2007; 45:758-65. [PMID: 17661430 DOI: 10.1002/mrc.2044] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
Configurational assignment and conformational analysis of a series of iminodihydrofurans obtained from cyanoacetylenic alcohols were performed on the basis of experimental measurements and high-level ab initio calculations of their (13)C-(13)C spin-spin coupling constants. The title compounds were shown to form and exist in solution as the individual Z isomers, adopting the orthogonal orientation of the amino, alkylamino and dialkylamino groups and the s-trans orientation of the CONH(2) group at the C(4) position of the 2,5-dihydro-2-iminofuran moiety.
Collapse
Affiliation(s)
- Leonid B Krivdin
- A. E. Favorsky Institute of Chemistry, Irkutsk, Siberian Branch of the Russian Academy of Sciences, Favorsky St. 1, 664033 Irkutsk, Russia.
| | | | | | | | | | | |
Collapse
|
45
|
Chernyshev KA, Krivdin LB, Larina LI, Konkova TV, Demina MM, Medvedeva AS. Configurational assignment of carbon, silicon and germanium containing propynal oximes by means of 13C-1H, 13C-13C and 15N-1H spin-spin coupling constants. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2007; 45:661-6. [PMID: 17559158 DOI: 10.1002/mrc.2017] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
Configurational assignment of five carbon, silicon and germanium containing propynal oximes has been carried out by means of experimental measurements and high-level ab initio calculations of their 13C-1H, 13C-13C and 15N-1H spin-spin coupling constants. The title compounds were shown to exist in the nonequilibrium mixture of E and Z isomers with the energy difference of less than 0.3 kcal/mol calculated at the MP2/6-311G** level.
Collapse
Affiliation(s)
- Kirill A Chernyshev
- A. E. Favorsky Institute of Chemistry, Irkutsk, Siberian Branch of the Russian Academy of Sciences, Favorsky St. 1, 664033 Irkutsk, Russia
| | | | | | | | | | | |
Collapse
|
46
|
Vaara J. Theory and computation of nuclear magnetic resonance parameters. Phys Chem Chem Phys 2007; 9:5399-418. [PMID: 17925967 DOI: 10.1039/b706135h] [Citation(s) in RCA: 192] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
The art of quantum chemical electronic structure calculation has over the last 15 years reached a point where systematic computational studies of magnetic response properties have become a routine procedure for molecular systems. One of their most prominent areas of application are the spectral parameters of nuclear magnetic resonance (NMR) spectroscopy, due to the immense importance of this experimental method in many scientific disciplines. This article attempts to give an overview on the theory and state-of-the-art of the practical computations in the field, in terms of the size of systems that can be treated, the accuracy that can be expected, and the various factors that would influence the agreement of even the most accurate imaginable electronic structure calculation with experiment. These factors include relativistic effects, thermal effects, as well as solvation/environmental influences, where my group has been active. The dependence of the NMR spectra on external magnetic and optical fields is also briefly touched on.
Collapse
Affiliation(s)
- Juha Vaara
- Laboratory of Physical Chemistry, Department of Chemistry, FIN-00014, University of Helsinki, Finland.
| |
Collapse
|
47
|
Rusakov YY, Krivdin LB, Shmidt EY, Vasil’tsov AM, Mikhaleva AI, Trofimov BA. 13C-13C spin-spin coupling constants in structural studies: XL. Conformational analysis of N-vinylpyrroles. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2007. [DOI: 10.1134/s1070428007060140] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
|
48
|
Del Bene JE, Elguero J, Alkorta I, Yáñez M, Mó O. Spin−Spin Coupling Constants for Iminoboranes RBNH, HBNR, and RBNR and Comparisons with Corresponding Isoelectronic Acetylenes RCCH and RCCR, for R = H, CH3, NH2, OH, and F. J Chem Theory Comput 2007; 3:549-56. [DOI: 10.1021/ct600351p] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Janet E. Del Bene
- Department of Chemistry, Youngstown State University, Youngstown, Ohio 44555, Instituto de Química Médica, Consejo Superior de Investigaciones Científicas, Juan de la Cierva, 3, E-28006 Madrid, Spain, and Departamento de Química, C-9, Universidad Autónoma de Madrid, Cantoblanco, E-28049 Madrid, Spain
| | - José Elguero
- Department of Chemistry, Youngstown State University, Youngstown, Ohio 44555, Instituto de Química Médica, Consejo Superior de Investigaciones Científicas, Juan de la Cierva, 3, E-28006 Madrid, Spain, and Departamento de Química, C-9, Universidad Autónoma de Madrid, Cantoblanco, E-28049 Madrid, Spain
| | - Ibon Alkorta
- Department of Chemistry, Youngstown State University, Youngstown, Ohio 44555, Instituto de Química Médica, Consejo Superior de Investigaciones Científicas, Juan de la Cierva, 3, E-28006 Madrid, Spain, and Departamento de Química, C-9, Universidad Autónoma de Madrid, Cantoblanco, E-28049 Madrid, Spain
| | - Manuel Yáñez
- Department of Chemistry, Youngstown State University, Youngstown, Ohio 44555, Instituto de Química Médica, Consejo Superior de Investigaciones Científicas, Juan de la Cierva, 3, E-28006 Madrid, Spain, and Departamento de Química, C-9, Universidad Autónoma de Madrid, Cantoblanco, E-28049 Madrid, Spain
| | - Otilia Mó
- Department of Chemistry, Youngstown State University, Youngstown, Ohio 44555, Instituto de Química Médica, Consejo Superior de Investigaciones Científicas, Juan de la Cierva, 3, E-28006 Madrid, Spain, and Departamento de Química, C-9, Universidad Autónoma de Madrid, Cantoblanco, E-28049 Madrid, Spain
| |
Collapse
|
49
|
van Mourik T, Dingley AJ. Geometry Dependence of Spin–Spin Couplings in Cyanamide by DFT Analysis. Chemphyschem 2007; 8:288-96. [PMID: 17221902 DOI: 10.1002/cphc.200600489] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
There have been numerous theoretical and experimental investigations examining NMR parameters related to non-amino N-H...N H-bonded moieties in both biological and chemical contexts. In contrast, little information on the geometry dependence of NMR parameters related to the biologically important H-bond donor amino group is available. Herein, the geometric dependencies of the one-bond amino N-H spin-spin coupling constants [(1)J(NH)] in the cyanamide monomer and dimer have been computed with B3LYP and the aug-cc-pVTZ-su0 basis set. In an isolated planar cyanamide molecule, the |(1)J(NH)| couplings were found to increase as the N-H bond lengthened. In contrast, in the planar cyanamide dimer the size of the H-bonded amino N-H coupling (|(1)J(N(d)H(d))|) decreased with increasing N(d)H(d) bond length. The |(1)J(N(d)H(d))| coupling was larger than the |(1)J(N(d)H(free))| coupling for N(d)H(d) distances up to 1.18 A (for a fixed N(d)H(free) distance of 1.006 A). Hence, the decrease of |(1)J(NH)| with increasing N-H distance, as well as the larger value of |(1)J(N(d)H(d))| compared to |(1)J(N(d)H(free))|, were only observed for situations where the amino group is involved in an H-bonding interaction. This is attributed to electron redistribution induced by the presence of the second cyanamide molecule. Similar electron-redistribution effects are thought to be responsible for the observed distance dependence of computed (1)J(NH) couplings of H-bonded amino groups in near-planar G-quartet structures. Here, the |(1)J(NH)| couplings of the amino N-H bonds decreased with increasing N-H bond length whereas the |(1)J(N(d)H(d))| couplings are approximately 7 Hz larger than the |(1)J(N(d)H(free))| couplings, despite the longer N(d)-H(d) bond length.
Collapse
Affiliation(s)
- Tanja van Mourik
- Chemistry Department, University College London, 20 Gordon Street, London WC1H 0AJ, UK.
| | | |
Collapse
|
50
|
Rusakov YY, Krivdin LB, Senotrusova EY, Schmidt EY, Vasiltsov AM, Mikhaleva AI, Trofimov BA, Dyachenko OA, Chekhlov AN, Kazheva ON. Conformational study of 2-arylazo-1-vinylpyrroles. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2007; 45:142-51. [PMID: 17143911 DOI: 10.1002/mrc.1934] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Conformational study of 2-phenylazo-1-vinylpyrrole and 2-(4-bromophenyl)azo-5-methyl-1-vinylpyrrole was performed on the basis of the experimental measurements and high-level ab initio calculations of their 13C--13C and 13C--1H spin-spin coupling constants, showing marked stereochemical behaviour upon the internal rotation of the vinyl group and the pyrrolyl moiety. In liquid phase, both compounds were found to adopt predominant s-trans-s-trans conformation with the noticeable population (ca. 30%) of the higher-energy s-cis-s-trans conformation in the latter compound. As follows from the X-ray data, 2-phenylazo-1-vinylpyrrole crystallizes in s-trans-s-trans conformation while the crystalline molecular structure of 2-(4-bromophenyl)azo-5-methyl-1-vinylpyrrole is s-cis-s-trans.
Collapse
Affiliation(s)
- Yury Yu Rusakov
- A. E. Favorsky Institute of Chemistry, Irkutsk, Siberian Branch of the Russian Academy of Sciences, Favorsky St. 1, 664033 Irkutsk, Russia
| | | | | | | | | | | | | | | | | | | |
Collapse
|