Impact of tortuous flow on bacteria streamer development in microfluidic system during filtration

The porous structure induced heterogeneous and localized failure of the biofilm in microfluidic channels

Understanding the mechanism of biofilm distribution and detachment is very important to effectively improve water treatment and prevent blockage in porous media. The existing research is more related to the local biofilm evolving around one or few microposts and the lack of the integral biofilm evolution in a micropost array for a longer growth period. This study combines microfluidic experiments and mathematical simulations to study the distribution and detachment of biofilm in porous media. Microfluidic chips with an array of microposts with different sizes are designed to simulate the physical pore structure of soil. The research shows that the initial formation and distribution of biofilm are influenced by bacterial transport velocity gradients within the pore space. Bacteria prefer to aggregate areas with smaller microposts, leading to the development of biofilm in those regions. Consequently, impermeable blockage structures form in this area. By analyzing experimental images of biofilm structures at the later stages, as well as coupling fluid flow and porous medium, and the finite element simulation, we find that the biofilm detachment is correlated with the morphology and permeability (kb) (from 10-15 to 10-9 m2) of the biofilm. The simulations show that there are two modes of biofilm detachment, such as internal detachment and external erosion.

Application of filter media surface hydrophobic modification to reduce bioclogging in the infiltration system

Bioclogging is a commonly encountered operational issue that lowers hydraulic conductivity and the overall performance of the infiltration systems. In this paper, a novel processing for alleviating bioclogging by filter media surface hydrophobic modification was presented. Two-dimensional porous media cells were used to observe the influence of hydrophobic modification on biofilm growth in the pore structure. Moreover, two continuous-flow columns packed with gravel, one of which half gravel was hydrophobically modified, were operated with artificial wastewater to verify the effect of hydrophobic modification on bioclogging alleviation. The results showed that the biofilm growth in the cell with hydrophobic modification was slow, and the biomass was less and liable to wipe off after hydrophobic treatment. Meanwhile, the hydraulic efficiency of the flow seepage field was also improved after hydrophobic treatment. The column tests results showed that the hydraulic conductivity of the filter bed with hydrophobic modification (Column B) decreased more slowly than that of another without hydrophobic modification (Column A). Column B had the hydraulic conductivity (k) of 0.66 cm/s in the final stage of the experiment, while the k of Column A was 0.14 cm/s. It verified that hydrophobic modification of partial filter media can alleviate the bioclogging problem of the infiltration systems to some extent. The results provide a new idea and potential technical support for solving bioclogging problem.

Microfluidic devices for studying bacterial taxis, drug testing and biofilm formation

Some bacteria have coevolved to establish symbiotic or pathogenic relationships with plants, animals or humans. With human association, the bacteria can cause a variety of diseases. Thus, understanding bacterial phenotypes at the single-cell level is essential to develop beneficial applications. Traditional microbiological techniques have provided great knowledge about these organisms; however, they have also shown limitations, such as difficulties in culturing some bacteria, the heterogeneity of bacterial populations or difficulties in recreating some physical or biological conditions. Microfluidics is an emerging technique that complements current biological assays. Since microfluidics works with micrometric volumes, it allows fine-tuning control of the test conditions. Moreover, it allows the recruitment of three-dimensional (3D) conditions, in which several processes can be integrated and gradients can be generated, thus imitating physiological 3D environments. Here, we review some key microfluidic-based studies describing the effects of different microenvironmental conditions on bacterial response, biofilm formation and antimicrobial resistance. For this aim, we present different studies classified into six groups according to the design of the microfluidic device: (i) linear channels, (ii) mixing channels, (iii) multiple floors, (iv) porous devices, (v) topographic devices and (vi) droplet microfluidics. Hence, we highlight the potential and possibilities of using microfluidic-based technology to study bacterial phenotypes in comparison with traditional methodologies.

Bacterial streamers as colloidal systems: Five grand challenges

Bacteria can thrive in biofilms, which are intricately organized communities with cells encased in a self-secreted matrix of extracellular polymeric substances (EPS). Imposed hydrodynamic stresses can transform this active colloidal dispersion of bacteria and EPS into slender thread-like entities called streamers. In this perspective article, the reader is introduced to the world of such deformable 'bacteria-EPS' composites that are a subclass of the generic flow-induced colloidal structures. While bacterial streamers have been shown to form in a variety of hydrodynamic conditions (turbulent and creeping flows), its abiotic analogues have only been demonstrated in low Reynolds number (Re < 1) particle-laden polymeric flows. Streamers are relevant to a variety of situations ranging from natural formations in caves and river beds to clogging of biomedical devices and filtration membranes. A critical review of the relevant biophysical aspects of streamer formation phenomena and unique attributes of its material behavior are distilled to unveil five grand scientific challenges. The coupling between colloidal hydrodynamics, device geometry and streamer formation are highlighted.

Bacterial biomechanics-From individual behaviors to biofilm and the gut flora

Bacteria inhabit a variety of locations and play important roles in the environment and health. Our understanding of bacterial biomechanics has improved markedly in the last decade and has revealed that biomechanics play a significant role in microbial biology. The obtained knowledge has enabled investigation of complex phenomena, such as biofilm formation and the dynamics of the gut flora. A bottom-up strategy, i.e., from the cellular to the macroscale, facilitates understanding of macroscopic bacterial phenomena. In this Review, we first cover the biomechanics of individual bacteria in the bulk liquid and on surfaces as the base of complex phenomena. The collective behaviors of bacteria in simple environments are next introduced. We then introduce recent advances in biofilm biomechanics, in which adhesion force and the flow environment play crucial roles. We also review transport phenomena in the intestine and the dynamics of the gut flora, focusing on that in zebrafish. Finally, we provide an overview of the future prospects for the field.

Enzyme-Identified Phosphorus Limitation Linked to More Rapid Headloss Accumulation in Drinking Water Biofilters

Drinking water biofilters can improve water quality by transforming contaminants or their precursors, but they also can develop headloss more rapidly than do abiotic filters. Phosphorus supplementation has been proposed as one strategy to lengthen biofilter run times, but the impact of this strategy in field tests has been mixed. The current bench-scale study found that severe phosphorus limitation, as indicated by a high phosphatase to total glycosidase activity ratio (PHO:GLY), led to 230% higher headloss accumulation rate when particles were loaded onto the biofilters as compared to the same experiment performed under a mild phosphorus limitation. Phosphorus limitation was associated with higher concentrations of extracellular polymeric substances, lower biomass concentrations, a more filamentous biofilm morphology, and increased relative abundance of Hyphomicrobiaceae (a family of stalked bacteria) on the biofilter media. These differences in the biofilm likely contributed to higher headloss. This work suggests that phosphorus supplementation could improve biofilter hydraulics in the field if the biofilter is severely phosphorus limited, which was indicated by a PHO:GLY greater than 154 under the conditions tested in this study.

Electrochemical inactivation of bacteria with a titanium sub-oxide reactive membrane

A reactive electrochemical membrane (REM) system was developed with titanium suboxide microfiltration membrane serving as the filter and the anode, and was examined to inactivate Escherichia coli (E. coli) in water at various current densities. After passing through the membrane filter, the concentration of E. coli decreased from 6.46 log CFU/mL to 0.18 log CFU/mL. The REM operation and effects, including membrane pressure, anode potential, protein leakage, and cell morphology, were characterized under different treatment conditions. It was found that several mechanisms, including membrane filtration, external electrical field influence, and direct oxidation, functioned in concert to lead to bacteria removal and inactivation, and direct oxidation likely played the major role. As revealed by scanning electron microscope and extracellular protein analysis, high current density and voltage caused severe cell damage that resulted in partial or complete cell disintegration. The removal of a model virus, bacteriophage MS2, was also investigated at the current density of 10 mA cm^-2 and achieved 6.74 log reduction compared to the original concentration (10¹¹ PFU/mL). In addition to illustration of mechanisms, this study may provide a potentially promising approach that is suitable for decentralized treatment to meet dispersed water disinfection needs.

Impact of bacterial streamers on biofouling of microfluidic filtration systems

We investigate the effect of biofouling in a microfluidic filtration system. The microfluidic platform consists of cylindrical microposts with a pore-spacing of 2 μm, which act as the filtration section of the device. One of our key findings is that there exists a critical pressure difference above which pronounced streamer formation is observed, which eventually leads to rapid clogging of the device with an accompanying exponential decrease in permeate flow. Moreover, when streamers do form, de-clogging of pores also occurs intermittently, which leads to small time scale fluctuations [O(10¹ s)] superimposed upon the large time scale [O(10² min)] clogging of the system. These de-clogging phenomena lead to a sharp increase in water permeation through the microfluidic filtration device but rates the water quality as biomass debris is transported in the permeate. Streamer-based clogging shares similarities with various fouling mechanisms typically associated with membranes. Finally, we also show that the pH of the feed strongly affects biofouling of the microfluidic filtration system.

Nano-Enabled Approaches to Chemical Imaging in Biosystems

Understanding and predicting how biosystems function require knowledge about the dynamic physicochemical environments with which they interact and alter by their presence. Yet, identifying specific components, tracking the dynamics of the system, and monitoring local environmental conditions without disrupting biosystem function present significant challenges for analytical measurements. Nanomaterials, by their very size and nature, can act as probes and interfaces to biosystems and offer solutions to some of these challenges. At the nanoscale, material properties emerge that can be exploited for localizing biomolecules and making chemical measurements at cellular and subcellular scales. Here, we review advances in chemical imaging enabled by nanoscale structures, in the use of nanoparticles as chemical and environmental probes, and in the development of micro- and nanoscale fluidic devices to define and manipulate local environments and facilitate chemical measurements of complex biosystems. Integration of these nano-enabled methods will lead to an unprecedented understanding of biosystem function.

In situ nuclear magnetic resonance microimaging of live biofilms in a microchannel

The firstin situnuclear magnetic resonance microimaging of live biofilms in a transferrable microfluidic platform.

Nonlinear deformation and localized failure of bacterial streamers in creeping flows

We investigate the failure of bacterial floc mediated streamers in a microfluidic device in a creeping flow regime using both experimental observations and analytical modeling. The quantification of streamer deformation and failure behavior is possible due to the use of 200 nm fluorescent polystyrene beads which firmly embed in the extracellular polymeric substance (EPS) and act as tracers. The streamers, which form soon after the commencement of flow begin to deviate from an apparently quiescent fully formed state in spite of steady background flow and limited mass accretion indicating significant mechanical nonlinearity. This nonlinear behavior shows distinct phases of deformation with mutually different characteristic times and comes to an end with a distinct localized failure of the streamer far from the walls. We investigate this deformation and failure behavior for two separate bacterial strains and develop a simplified but nonlinear analytical model describing the experimentally observed instability phenomena assuming a necking route to instability. Our model leads to a power law relation between the critical strain at failure and the fluid velocity scale exhibiting excellent qualitative and quantitative agreeing with the experimental rupture behavior.

Bacterial floc mediated rapid streamer formation in creeping flows

One of the central puzzles concerning the interaction of low Reynolds number fluid transport with bacterial biomass is the formation of filamentous structures called streamers. In this manuscript, we report our discovery of a new kind of low Re bacterial streamers, which appear from pre-formed bacterial flocs. In sharp contrast to the biofilm-mediated streamers, these streamers form over extremely small timescales (less than a second). Our experiments, carried out in a microchannel with micropillars rely on fluorescence microscopy techniques to illustrate that floc-mediated streamers form when a freely-moving floc adheres to the micropillar wall and gets rapidly sheared by the background flow. We also show that at their inception the deformation of the flocs is dominated by recoverable large strains indicating significant elasticity. These strains subsequently increase tremendously to produce filamentous streamers. Interestingly, we find that these fully formed streamers are not static structures and show viscous response at time scales larger than their formation time scales. Finally, we show that such novel streamer formation can lead to rapid clogging of microfluidic devices.