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For: Wu YY, Bao L, Zhang X, Tan ZJ. Flexibility of short DNA helices with finite-length effect: From base pairs to tens of base pairs. J Chem Phys 2016;142:125103. [PMID: 25833610 DOI: 10.1063/1.4915539] [Citation(s) in RCA: 43] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]  Open
Number Cited by Other Article(s)
1
Mou X, Liu K, He L, Li S. Mechanical response of double-stranded DNA: Bend, twist, and overwind. J Chem Phys 2024;161:085102. [PMID: 39177087 DOI: 10.1063/5.0216585] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2024] [Accepted: 08/09/2024] [Indexed: 08/24/2024]  Open
2
Zheng CC, Chen YL, Dong HL, Zhang XH, Tan ZJ. Effect of ethanol on the elasticities of double-stranded RNA and DNA revealed by magnetic tweezers and simulations. J Chem Phys 2024;161:075101. [PMID: 39145565 DOI: 10.1063/5.0211869] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2024] [Accepted: 07/29/2024] [Indexed: 08/16/2024]  Open
3
Wang X, Huang T, Li L, Xu Y. Effect of temperature on anisotropic bending elasticity of dsRNA: an all-atom molecular dynamics simulation. RSC Adv 2024;14:17170-17177. [PMID: 38808231 PMCID: PMC11130765 DOI: 10.1039/d4ra02354d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Accepted: 05/17/2024] [Indexed: 05/30/2024]  Open
4
Zhang Z, Mou X, Zhang Y, He L, Li S. Influence of temperature on bend, twist and twist-bend coupling of dsDNA. Phys Chem Chem Phys 2024;26:8077-8088. [PMID: 38224130 DOI: 10.1039/d3cp04932a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2024]
5
Abdelhady H, Aleanizy F, Alqahtani F, Bukhari A, Soliman S, Sau S, Iyer A. Visualizing the 4D Impact of Gold Nanoparticles on DNA. Int J Mol Sci 2023;25:542. [PMID: 38203711 PMCID: PMC10778996 DOI: 10.3390/ijms25010542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Revised: 12/22/2023] [Accepted: 12/28/2023] [Indexed: 01/12/2024]  Open
6
Wang Y, Wang H, Zhang S, Yang Z, Shi X, Zhang L. Exploration of the Character Representation of DNA Chiral Conformations and Deformations via a Curved Surface Discrete Frenet Frame. Int J Mol Sci 2023;25:4. [PMID: 38203177 PMCID: PMC10778681 DOI: 10.3390/ijms25010004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Revised: 12/12/2023] [Accepted: 12/14/2023] [Indexed: 01/12/2024]  Open
7
Zoli M. Twist-stretch relations in nucleic acids. EUROPEAN BIOPHYSICS JOURNAL : EBJ 2023;52:641-650. [PMID: 37357224 DOI: 10.1007/s00249-023-01669-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Revised: 05/15/2023] [Accepted: 06/10/2023] [Indexed: 06/27/2023]
8
Erban R, Togashi Y. Asymmetric Periodic Boundary Conditions for All-Atom Molecular Dynamics and Coarse-Grained Simulations of Nucleic Acids. J Phys Chem B 2023;127:8257-8267. [PMID: 37713594 PMCID: PMC10544013 DOI: 10.1021/acs.jpcb.3c03887] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2023] [Revised: 07/31/2023] [Indexed: 09/17/2023]
9
Chen YT, Yang H, Chu JW. Mechanical codes of chemical-scale specificity in DNA motifs. Chem Sci 2023;14:10155-10166. [PMID: 37772098 PMCID: PMC10529945 DOI: 10.1039/d3sc01671d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Accepted: 08/28/2023] [Indexed: 09/30/2023]  Open
10
Mu ZC, Tan YL, Liu J, Zhang BG, Shi YZ. Computational Modeling of DNA 3D Structures: From Dynamics and Mechanics to Folding. Molecules 2023;28:4833. [PMID: 37375388 DOI: 10.3390/molecules28124833] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Revised: 06/11/2023] [Accepted: 06/14/2023] [Indexed: 06/29/2023]  Open
11
Zhang Y, He L, Li S. Temperature dependence of DNA elasticity: An all-atom molecular dynamics simulation study. J Chem Phys 2023;158:094902. [PMID: 36889965 DOI: 10.1063/5.0138940] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/15/2023]  Open
12
Zhang CY, Zhang NH. Mechanical Constraint Effect on DNA Persistence Length. MOLECULES (BASEL, SWITZERLAND) 2022;27:molecules27227769. [PMID: 36431871 PMCID: PMC9696218 DOI: 10.3390/molecules27227769] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Revised: 10/31/2022] [Accepted: 11/04/2022] [Indexed: 11/16/2022]
13
Sefer A, Kallis E, Eilert T, Röcker C, Kolesnikova O, Neuhaus D, Eustermann S, Michaelis J. Structural dynamics of DNA strand break sensing by PARP-1 at a single-molecule level. Nat Commun 2022;13:6569. [PMID: 36323657 PMCID: PMC9630430 DOI: 10.1038/s41467-022-34148-1] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Accepted: 10/14/2022] [Indexed: 11/06/2022]  Open
14
Mu ZC, Tan YL, Zhang BG, Liu J, Shi YZ. Ab initio predictions for 3D structure and stability of single- and double-stranded DNAs in ion solutions. PLoS Comput Biol 2022;18:e1010501. [PMID: 36260618 PMCID: PMC9621594 DOI: 10.1371/journal.pcbi.1010501] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2022] [Revised: 10/31/2022] [Accepted: 09/27/2022] [Indexed: 11/07/2022]  Open
15
Zhang Y, Yan M, Huang T, Wang X. Understanding the Structural Elasticity of RNA and DNA: All‐Atom Molecular Dynamics. ADVANCED THEORY AND SIMULATIONS 2022. [DOI: 10.1002/adts.202200534] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
16
Qiang XW, Zhang C, Dong HL, Tian FJ, Fu H, Yang YJ, Dai L, Zhang XH, Tan ZJ. Multivalent Cations Reverse the Twist-Stretch Coupling of RNA. PHYSICAL REVIEW LETTERS 2022;128:108103. [PMID: 35333091 DOI: 10.1103/physrevlett.128.108103] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2021] [Accepted: 02/10/2022] [Indexed: 06/14/2023]
17
Sykes KS, White RJ. Nucleic Acid Identity, Structure, and Flexibility Affect the Electrochemical Signal of Tethered Redox Molecules upon Biopolymer Collapse. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2021;37:12466-12475. [PMID: 34644498 PMCID: PMC10150403 DOI: 10.1021/acs.langmuir.1c02161] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
18
Dohnalová H, Lankaš F. Deciphering the mechanical properties of B‐DNA duplex. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2021. [DOI: 10.1002/wcms.1575] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
19
Stellwagen NC. Using capillary electrophoresis to characterize the hydrodynamic and electrostatic properties of DNA in solutions containing various monovalent cations. Electrophoresis 2021;43:309-326. [PMID: 34510492 DOI: 10.1002/elps.202100176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Revised: 08/27/2021] [Accepted: 09/03/2021] [Indexed: 11/08/2022]
20
Al-Shaer A, Lyons A, Ishikawa Y, Hudson BG, Boudko SP, Forde NR. Sequence-dependent mechanics of collagen reflect its structural and functional organization. Biophys J 2021;120:4013-4028. [PMID: 34390685 DOI: 10.1016/j.bpj.2021.08.013] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2020] [Revised: 05/25/2021] [Accepted: 08/06/2021] [Indexed: 01/06/2023]  Open
21
Segers M, Skoruppa E, Stevens JA, Vangilbergen M, Voorspoels A, Carlon E. Comment on "Flexibility of short DNA helices with finite-length effect: From base pairs to tens of base pairs" [J. Chem. Phys. 142, 125103 (2015)]. J Chem Phys 2021;155:027101. [PMID: 34266243 DOI: 10.1063/5.0055349] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
22
Zheng Y, Lin C, Zhang JS, Tan ZJ. Ion-mediated interactions between like-charged polyelectrolytes with bending flexibility. Sci Rep 2020;10:21586. [PMID: 33299024 PMCID: PMC7726156 DOI: 10.1038/s41598-020-78684-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Accepted: 11/27/2020] [Indexed: 12/12/2022]  Open
23
Jeong J, Kim HD. Determinants of cyclization-decyclization kinetics of short DNA with sticky ends. Nucleic Acids Res 2020;48:5147-5156. [PMID: 32282905 PMCID: PMC7229855 DOI: 10.1093/nar/gkaa207] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2020] [Revised: 03/17/2020] [Accepted: 03/25/2020] [Indexed: 12/16/2022]  Open
24
Wu K, Qi C, Zhu Z, Wang C, Song B, Chang C. Terahertz Wave Accelerates DNA Unwinding: A Molecular Dynamics Simulation Study. J Phys Chem Lett 2020;11:7002-7008. [PMID: 32786218 DOI: 10.1021/acs.jpclett.0c01850] [Citation(s) in RCA: 51] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
25
Stellwagen E, Stellwagen NC. Electrophoretic Mobility of DNA in Solutions of High Ionic Strength. Biophys J 2020;118:2783-2789. [PMID: 32445623 DOI: 10.1016/j.bpj.2020.02.034] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2019] [Revised: 02/06/2020] [Accepted: 02/27/2020] [Indexed: 12/11/2022]  Open
26
Drozdetski AV, Mukhopadhyay A, Onufriev AV. Strongly Bent Double-Stranded DNA: Reconciling Theory and Experiment. FRONTIERS IN PHYSICS 2019;7:195. [PMID: 32601596 PMCID: PMC7323118 DOI: 10.3389/fphy.2019.00195] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
27
Xiao S, Liang H, Wales DJ. The Contribution of Backbone Electrostatic Repulsion to DNA Mechanical Properties is Length-Scale-Dependent. J Phys Chem Lett 2019;10:4829-4835. [PMID: 31380654 DOI: 10.1021/acs.jpclett.9b01960] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
28
Liu JH, Xi K, Zhang X, Bao L, Zhang X, Tan ZJ. Structural Flexibility of DNA-RNA Hybrid Duplex: Stretching and Twist-Stretch Coupling. Biophys J 2019;117:74-86. [PMID: 31164196 PMCID: PMC6626833 DOI: 10.1016/j.bpj.2019.05.018] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2018] [Revised: 04/25/2019] [Accepted: 05/17/2019] [Indexed: 12/21/2022]  Open
29
Xi K, Wang FH, Xiong G, Zhang ZL, Tan ZJ. Competitive Binding of Mg2+ and Na+ Ions to Nucleic Acids: From Helices to Tertiary Structures. Biophys J 2019;114:1776-1790. [PMID: 29694858 DOI: 10.1016/j.bpj.2018.03.001] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2017] [Revised: 02/21/2018] [Accepted: 03/06/2018] [Indexed: 12/16/2022]  Open
30
Si D, Xu Z, Nan N, Hu G. DNA Confined in a Nanodroplet: A Molecular Dynamics Study. J Phys Chem B 2018;122:8812-8818. [PMID: 30180585 DOI: 10.1021/acs.jpcb.8b05056] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
31
Jin L, Shi YZ, Feng CJ, Tan YL, Tan ZJ. Modeling Structure, Stability, and Flexibility of Double-Stranded RNAs in Salt Solutions. Biophys J 2018;115:1403-1416. [PMID: 30236782 DOI: 10.1016/j.bpj.2018.08.030] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2018] [Revised: 08/10/2018] [Accepted: 08/24/2018] [Indexed: 11/16/2022]  Open
32
Garai A, Ghoshdastidar D, Senapati S, Maiti PK. Ionic liquids make DNA rigid. J Chem Phys 2018;149:045104. [PMID: 30068211 DOI: 10.1063/1.5026640] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]  Open
33
Zhang X, Bao L, Wu YY, Zhu XL, Tan ZJ. Radial distribution function of semiflexible oligomers with stretching flexibility. J Chem Phys 2018;147:054901. [PMID: 28789545 DOI: 10.1063/1.4991689] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]  Open
34
Zoli M. End-to-end distance and contour length distribution functions of DNA helices. J Chem Phys 2018;148:214902. [DOI: 10.1063/1.5021639] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
35
Vargas-Lara F, Starr FW, Douglas JF. Molecular rigidity and enthalpy-entropy compensation in DNA melting. SOFT MATTER 2017;13:8309-8330. [PMID: 29057399 DOI: 10.1039/c7sm01220a] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
36
Sensale S, Peng Z, Chang HC. Kinetic theory for DNA melting with vibrational entropy. J Chem Phys 2017;147:135101. [PMID: 28987107 DOI: 10.1063/1.4996174] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
37
Zhang ZL, Wu YY, Xi K, Sang JP, Tan ZJ. Divalent Ion-Mediated DNA-DNA Interactions: A Comparative Study of Triplex and Duplex. Biophys J 2017;113:517-528. [PMID: 28793207 DOI: 10.1016/j.bpj.2017.06.021] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2017] [Revised: 06/08/2017] [Accepted: 06/12/2017] [Indexed: 12/21/2022]  Open
38
Xu Z, Lei X, Tu Y, Tan ZJ, Song B, Fang H. Dynamic Cooperation of Hydrogen Binding and π Stacking in ssDNA Adsorption on Graphene Oxide. Chemistry 2017;23:13100-13104. [DOI: 10.1002/chem.201701733] [Citation(s) in RCA: 39] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2017] [Indexed: 12/11/2022]
39
Bao L, Zhang X, Shi YZ, Wu YY, Tan ZJ. Understanding the Relative Flexibility of RNA and DNA Duplexes: Stretching and Twist-Stretch Coupling. Biophys J 2017;112:1094-1104. [PMID: 28355538 DOI: 10.1016/j.bpj.2017.02.022] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2016] [Revised: 02/02/2017] [Accepted: 02/21/2017] [Indexed: 01/16/2023]  Open
40
Zoli M. Twist-stretch profiles of DNA chains. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2017;29:225101. [PMID: 28394255 DOI: 10.1088/1361-648x/aa6c50] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
41
Shi YZ, Jin L, Wang FH, Zhu XL, Tan ZJ. Predicting 3D Structure, Flexibility, and Stability of RNA Hairpins in Monovalent and Divalent Ion Solutions. Biophys J 2016;109:2654-2665. [PMID: 26682822 DOI: 10.1016/j.bpj.2015.11.006] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2015] [Revised: 10/09/2015] [Accepted: 11/06/2015] [Indexed: 10/24/2022]  Open
42
Zoli M. J-factors of short DNA molecules. J Chem Phys 2016;144:214104. [DOI: 10.1063/1.4952978] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]  Open
43
Nucleic acid polymeric properties and electrostatics: Directly comparing theory and simulation with experiment. Adv Colloid Interface Sci 2016;232:49-56. [PMID: 26482088 DOI: 10.1016/j.cis.2015.09.008] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2015] [Revised: 09/18/2015] [Accepted: 09/29/2015] [Indexed: 11/24/2022]
44
Zoli M. Flexibility of short DNA helices under mechanical stretching. Phys Chem Chem Phys 2016;18:17666-77. [DOI: 10.1039/c6cp02981g] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
45
Chen T, Hong Y, Reinhard BM. Probing DNA Stiffness through Optical Fluctuation Analysis of Plasmon Rulers. NANO LETTERS 2015;15:5349-57. [PMID: 26121062 PMCID: PMC4624404 DOI: 10.1021/acs.nanolett.5b01725] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
46
Wu YY, Zhang ZL, Zhang JS, Zhu XL, Tan ZJ. Multivalent ion-mediated nucleic acid helix-helix interactions: RNA versus DNA. Nucleic Acids Res 2015;43:6156-65. [PMID: 26019178 PMCID: PMC4499160 DOI: 10.1093/nar/gkv570] [Citation(s) in RCA: 56] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2015] [Accepted: 05/20/2015] [Indexed: 01/30/2023]  Open
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