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Roelli P, Hu H, Verhagen E, Reich S, Galland C. Nanocavities for Molecular Optomechanics: Their Fundamental Description and Applications. ACS PHOTONICS 2024; 11:4486-4501. [PMID: 39584033 PMCID: PMC11583369 DOI: 10.1021/acsphotonics.4c01548] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/15/2024] [Revised: 09/17/2024] [Accepted: 09/19/2024] [Indexed: 11/26/2024]
Abstract
Vibrational Raman scattering-a process where light exchanges energy with a molecular vibration through inelastic scattering-is most fundamentally described in a quantum framework where both light and vibration are quantized. When the Raman scatterer is embedded inside a plasmonic nanocavity, as in some sufficiently controlled implementations of surface-enhanced Raman scattering (SERS), the coupled system realizes an optomechanical cavity where coherent and parametrically amplified light-vibration interaction becomes a resource for vibrational state engineering and nanoscale nonlinear optics. The purpose of this Perspective is to clarify the connection between the languages and parameters used in the fields of molecular cavity optomechanics (McOM) versus its conventional, "macroscopic" counterpart and to summarize the main results achieved so far in McOM and the most pressing experimental and theoretical challenges. We aim to make the theoretical framework of molecular cavity optomechanics practically usable for the SERS and nanoplasmonics community at large. While quality factors (Q) and mode volumes (V) essentially describe the performance of a nanocavity in enhancing light-matter interaction, we point to the light-cavity coupling efficiencies (η) and optomechanical cooperativities () as the key parameters for molecular optomechanics. As an illustration of the significance of these quantities, we investigate the feasibility of observing optomechanically induced transparency with a molecular vibration-a measurement that would allow for a direct estimate of the optomechanical cooperativity.
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Affiliation(s)
- Philippe Roelli
- Nano-optics
Group, CIC nanoGUNE BRTA, E-20018 Donostia-San
Sebastián, Spain
| | - Huatian Hu
- Center
for Biomolecular Nanotechnologies, Istituto Italiano di Tecnologia, via Barsanti 14, Arnesano, 73010, Italy
| | - Ewold Verhagen
- Center
for Nanophotonics, NWO Institute AMOLF, Science Park 104, 1098 XG Amsterdam, The Netherlands
| | - Stephanie Reich
- Department
of Physics, Freie Universität Berlin, 14195 Berlin, Germany
| | - Christophe Galland
- Institute
of Physics, Swiss Federal Institute of Technology
Lausanne (EPFL), CH-1015 Lausanne, Switzerland
- Center of
Quantum Science and Engineering, Swiss Federal
Institute of Technology Lausanne (EPFL), CH-1015 Lausanne, Switzerland
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2
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Stingel AM, Leemans J, Hens Z, Geiregat P, Petersen PB. Narrow homogeneous linewidths and slow cooling dynamics across infrared intra-band transitions in n-doped HgSe colloidal quantum dots. J Chem Phys 2023; 158:114202. [PMID: 36948807 DOI: 10.1063/5.0139795] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/03/2023] Open
Abstract
Intra-band transitions in colloidal quantum dots (QDs) are promising for opto-electronic applications in the mid-IR spectral region. However, such intra-band transitions are typically very broad and spectrally overlapping, making the study of individual excited states and their ultrafast dynamics very challenging. Here, we present the first full spectrum two-dimensional continuum infrared (2D CIR) spectroscopy study of intrinsically n-doped HgSe QDs, which exhibit mid-infrared intra-band transitions in their ground state. The obtained 2D CIR spectra reveal that underneath the broad absorption line shape of ∼500 cm-1, the transitions exhibit surprisingly narrow intrinsic linewidths with a homogeneous broadening of 175-250 cm-1. Furthermore, the 2D IR spectra are remarkably invariant, with no sign of spectral diffusion dynamics at waiting times up to 50 ps. Accordingly, we attribute the large static inhomogeneous broadening to the distribution of size and doping level of the QDs. In addition, the two higher-lying P-states of the QDs can be clearly identified in the 2D IR spectra along the diagonal with a cross-peak. However, there is no indication of cross-peak dynamics indicating that, despite the strong spin-orbit coupling in HgSe, transitions between the P-states must be longer than our maximum waiting time of 50 ps. This study illustrates a new frontier of 2D IR spectroscopy enabling the study of intra-band carrier dynamics in nanocrystalline materials across the entire mid-infrared spectrum.
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Affiliation(s)
- Ashley M Stingel
- Physical Chemistry II, Faculty of Chemistry and Biochemistry, Ruhr-University Bochum, Bochum, Germany
| | - Jari Leemans
- Physics and Chemistry of Nanostructures Group, Department of Chemistry, Faculty of Sciences, Ghent University, 9000 Gent, Belgium
| | - Zeger Hens
- Physics and Chemistry of Nanostructures Group, Department of Chemistry, Faculty of Sciences, Ghent University, 9000 Gent, Belgium
| | - Pieter Geiregat
- Physics and Chemistry of Nanostructures Group, Department of Chemistry, Faculty of Sciences, Ghent University, 9000 Gent, Belgium
| | - Poul B Petersen
- Physical Chemistry II, Faculty of Chemistry and Biochemistry, Ruhr-University Bochum, Bochum, Germany
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3
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Oppelt KT, Sevéry L, Utters M, Tilley SD, Hamm P. Flexible to rigid: IR spectroscopic investigation of a rhenium-tricarbonyl-complex at a buried interface. Phys Chem Chem Phys 2021; 23:4311-4316. [PMID: 33587068 DOI: 10.1039/d0cp06546c] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
This work explores the solid-liquid interface of a rhenium-tricarbonyl complex embedded in a layer of zirconium oxide deposited by atomic layer deposition (ALD). Time-resolved and steady state infrared spectroscopy were applied to reveal the correlations between the thickness of the ALD layer and the spectroscopic response of the system. We observed a transition of the molecular environment from flexible to rigid, as well as limitations to ligand exchange and excited state quenching on the embedded complexes, when the ALD layer is roughly of the same height as the molecules.
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Affiliation(s)
- Kerstin T Oppelt
- Department of Chemistry, University of Zurich, Winterthurerstr. 190, CH-8057 Zürich, Switzerland.
| | - Laurent Sevéry
- Department of Chemistry, University of Zurich, Winterthurerstr. 190, CH-8057 Zürich, Switzerland.
| | - Mirjam Utters
- Department of Chemistry, University of Zurich, Winterthurerstr. 190, CH-8057 Zürich, Switzerland.
| | - S David Tilley
- Department of Chemistry, University of Zurich, Winterthurerstr. 190, CH-8057 Zürich, Switzerland.
| | - Peter Hamm
- Department of Chemistry, University of Zurich, Winterthurerstr. 190, CH-8057 Zürich, Switzerland.
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4
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Chalyavi F, Schmitz AJ, Fetto NR, Tucker MJ, Brewer SH, Fenlon EE. Extending the vibrational lifetime of azides with heavy atoms. Phys Chem Chem Phys 2020; 22:18007-18013. [PMID: 32749405 DOI: 10.1039/d0cp02814b] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
The development of novel vibrational reporters (VRs), aka infrared (IR) probes, to study local environments and dynamic processes in biomolecules and materials continues to be an important area of research. Azides are important VRs because of their small size and large transition dipole strengths, however, their relatively short vibrational lifetimes (<2 ps) have limited their full potential. Herein we report that the vibrational lifetimes of azides can be increased by attaching them to heavy atoms and by using heavy 15N isotopes. Three group 14 atom triphenyl azides (Ph3CN3, Ph3SiN3, Ph3SnN3), and their triple-15N isotopomers, were synthesized in good yields. Tributyltin azide and its heavy isotopomer (Bu3Sn15N3) were also prepared to probe the effect of molecular scaffolding. The extinction coefficients for the natural abundance azides were determined, ranging from 900 to 1500 M-1 cm-1. The vibrational lifetimes of all azides were measured by pump-probe IR spectroscopy and each showed a major component with a short-to-moderate vibrational lifetime and a minor component with a much longer vibrational lifetime. Based on these results, the lifetime, aka the observation window, of an azide reporter can be extended from ∼2 ps to as long as ∼300 ps by a combination of isotopic labeling and heavy atom effect. 2D IR measurements of these compounds further confirmed the ability to observe these azide transitions at much longer timescales showing their utility to capture dynamic processes from tens to hundreds of picoseconds.
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Affiliation(s)
- Farzaneh Chalyavi
- Department of Chemistry, University of Wisconsin-Madison, Madison, WI 53706, USA
| | - Andrew J Schmitz
- Department of Chemistry, University of Nevada at Reno, Reno, NV 89557, USA.
| | - Natalie R Fetto
- Department of Chemistry, University of Nevada at Reno, Reno, NV 89557, USA.
| | - Matthew J Tucker
- Department of Chemistry, University of Nevada at Reno, Reno, NV 89557, USA.
| | - Scott H Brewer
- Department of Chemistry, Franklin & Marshall College, Lancaster, PA 17604, USA. ,
| | - Edward E Fenlon
- Department of Chemistry, Franklin & Marshall College, Lancaster, PA 17604, USA. ,
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5
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Tek G, Hamm P. A Correction Scheme for Fano Line Shapes in Two-Dimensional Infrared Spectroscopy. J Phys Chem Lett 2020; 11:6185-6190. [PMID: 32659094 DOI: 10.1021/acs.jpclett.0c01752] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The asymmetry of Fano line shapes observed for metal-adsorbate systems is reflected in two-dimensional infrared (2D IR) spectroscopy as a distorted spectrum. A phenomenological correction scheme is proposed that transforms distorted 2D IR spectra into conventional spectra. To that end, a phase correction factor is first derived from the IR absorption spectrum of the sample by symmetrizing the asymmetric line shape and subsequently applied to the distorted 2D IR spectra. The concept is illustrated for a model system consisting of an organic molecule (p-mercaptobenzonitrile) adsorbed on a sputter-coated metal layer (Au). The correction scheme reveals conventional, easily interpretable 2D IR spectra.
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Affiliation(s)
- Gökçen Tek
- Department of Chemistry, University of Zurich, CH-8057 Zurich, Switzerland
| | - Peter Hamm
- Department of Chemistry, University of Zurich, CH-8057 Zurich, Switzerland
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6
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Petti MK, Ostrander JS, Birdsall ER, Kunz MB, Armstrong ZT, Alperstein AM, Zanni MT. A Proposed Method to Obtain Surface Specificity with Pump-Probe and 2D Spectroscopies. J Phys Chem A 2020; 124:3471-3483. [PMID: 32255629 PMCID: PMC7993518 DOI: 10.1021/acs.jpca.9b11791] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Surfaces and interfaces are ubiquitous in nature. From cell membranes, to photovoltaic thin films, surfaces have important function in both biological and materials systems. Spectroscopic techniques have been developed to probe systems like these, such as sum frequency generation (SFG) spectroscopies. The advantage of SFG spectroscopy, a second-order spectroscopy, is that it can distinguish between signals produced from molecules in the bulk versus on the surface. We propose a polarization scheme for third-order spectroscopy experiments, such as pump-probe and 2D spectroscopy, to select for surface signals and not bulk signals. This proposed polarization condition uses one pulse perpendicular compared to the other three to isolate cross-peaks arising from molecules with polar and uniaxial (i.e., biaxial) order at a surface, while removing the signal from bulk isotropic molecules. In this work, we focus on two of these cases: XXXY and YYYX, which differ by the sign of the cross-peak they create. We compare this technique to SFG spectroscopy and vibrational circular dichroism to provide insight to the behavior of the cross-peak signal. We propose that these singularly cross-polarized schemes provide odd-ordered spectroscopies the surface-specificity typically associated with even-ordered techniques.
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Affiliation(s)
- Megan K Petti
- Department of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, United States
| | - Joshua S Ostrander
- Department of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, United States
| | - Erin R Birdsall
- Department of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, United States
| | - Miriam Bohlmann Kunz
- Department of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, United States
| | - Zachary T Armstrong
- Department of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, United States
| | - Ariel M Alperstein
- Department of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, United States
| | - Martin T Zanni
- Department of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, United States
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7
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Wu Y, Yu P, Chen Y, Zhao J, Liu H, Li Y, Wang J. Intensified C≡C Stretching Vibrator and Its Potential Role in Monitoring Ultrafast Energy Transfer in 2D Carbon Material by Nonlinear Vibrational Spectroscopy. J Phys Chem Lett 2019; 10:1402-1410. [PMID: 30848918 DOI: 10.1021/acs.jpclett.9b00027] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
In this work, an intensity-enhanced C≡C stretching infrared (IR) absorption is observed in hexakis[(trimethylsilyl)ethynyl]benzene (HTEB), whose IR transition dipole magnitude becomes comparable to that of a typical C═O stretch, and the enhancement is believed to be due to a joint effect of π-π conjugation and hyperconjugation associated with a terminal trimethylsilyl group. Using dynamical time-dependent two-dimensional infrared (2D IR) spectroscopy, a picosecond intramolecular energy redistribution process is observed between two nondegenerate C≡C stretching modes, whose symmetry breaking is attributed to a noncovalent halogen-bonding interaction between HTEB and solvent CH2Cl2. The rigid structure of HTEB and limited structural dynamics are also inferred from the insignificant initial spectral diffusion value extracted from the 2D IR spectra. This work provides the first nonlinear infrared investigation of the conventionally weak C≡C stretch. The methods outlined are particularly important for detailed understanding of the structure-related processes such as vibrational energy transfer in novel C≡C species containing materials such as graphdiyne.
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Affiliation(s)
- Yanzhou Wu
- University of Chinese Academy of Sciences , Beijing 100049 , People's Republic of China
| | - Pengyun Yu
- University of Chinese Academy of Sciences , Beijing 100049 , People's Republic of China
| | - Yanhuan Chen
- University of Chinese Academy of Sciences , Beijing 100049 , People's Republic of China
| | - Juan Zhao
- University of Chinese Academy of Sciences , Beijing 100049 , People's Republic of China
| | - Huibiao Liu
- University of Chinese Academy of Sciences , Beijing 100049 , People's Republic of China
| | - Yuliang Li
- University of Chinese Academy of Sciences , Beijing 100049 , People's Republic of China
| | - Jianping Wang
- University of Chinese Academy of Sciences , Beijing 100049 , People's Republic of China
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8
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Kiefer LM, Kubarych KJ. Two-dimensional infrared spectroscopy of coordination complexes: From solvent dynamics to photocatalysis. Coord Chem Rev 2018. [DOI: 10.1016/j.ccr.2018.05.006] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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9
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Nishida J, Breen JP, Wu B, Fayer MD. Extraordinary Slowing of Structural Dynamics in Thin Films of a Room Temperature Ionic Liquid. ACS CENTRAL SCIENCE 2018; 4:1065-1073. [PMID: 30159404 PMCID: PMC6107873 DOI: 10.1021/acscentsci.8b00353] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2018] [Indexed: 05/03/2023]
Abstract
The role that interfaces play in the dynamics of liquids is a fundamental scientific problem with vast importance in technological applications. From material science to biology, e.g., batteries to cell membranes, liquid properties at interfaces are frequently determinant in the nature of chemical processes. For most liquids, like water, the influence of an interface falls off on a ∼1 nm distance scale. Room temperature ionic liquids (RTILs) are a vast class of unusual liquids composed of complex cations and anions that are liquid salts at room temperature. They are unusual liquids with properties that can be finely tuned by selecting the structure of the cation and anion. RTILs are being used or developed in applications such as batteries, CO2 capture, and liquids for biological processes. Here, it is demonstrated quantitatively that the influence of an interface on RTIL properties is profoundly different from that observed in other classes of liquids. The dynamics of planar thin films of the room temperature ionic liquid, 1-butyl-3-methylimidazolium bis(trifluoromethylsulfonyl)imide (BmimNTf2), were investigated using two-dimensional infrared spectroscopy (2D IR) with the CN stretch of SeCN- as the vibrational probe. The structural dynamics (spectral diffusion) of the thin films with controlled nanometer thicknesses were measured and compared to the dynamics of the bulk liquid. The samples were prepared by spin coating the RTIL, together with the vibrational probe, onto a surface functionalized with an ionic monolayer that mimics the structure of the BmimNTf2. Near-Brewster's angle reflection pump-probe geometry 2D IR facilitated the detection of the exceedingly small signals from the films, some of which were only 14 nm thick. Even in quarter micron (250 nm) thick films, the observed dynamics were much slower than those of the bulk liquid. Using a new theoretical description, the correlation length (exponential falloff of the influence of the interfaces) was found to be 28 ± 5 nm. This very long correlation length, ∼30 times greater than that of water, has major implications for the use of RTILs in devices and other applications.
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10
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Paleček D, Tek G, Lan J, Iannuzzi M, Hamm P. Characterization of the Platinum-Hydrogen Bond by Surface-Sensitive Time-Resolved Infrared Spectroscopy. J Phys Chem Lett 2018; 9:1254-1259. [PMID: 29474082 DOI: 10.1021/acs.jpclett.8b00310] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
The vibrational dynamics of Pt-H on a nanostructured platinum surface has been examined by ultrafast infrared spectroscopy. Three bands are observed at 1800, 2000, and 2090 cm-1, which are assigned to Pt-CO in a bridged and linear configuration and Pt-H, respectively. Lifetime analysis revealed a time constant of (0.8 ± 0.1) ps for the Pt-H mode, considerably shorter than that of Pt-CO because of its stronger coupling to the metal substrate. Two-dimensional attenuated total reflection infrared spectroscopy provided additional evidence for the assignment based on the anharmonic shift, which is large in the case of Pt-H (90 cm-1), in agreement with the density functional theory calculations. The absorption cross section of Pt-H is smaller than that of the very strong Pt-CO vibration by only a modest factor of ∼1.5-3. Because Pt-H is transiently involved in catalytic water splitting on Pt, the present spectroscopic characterization paves the way for in-operando kinetic studies of such reactions.
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Affiliation(s)
- David Paleček
- Department of Chemistry , University of Zurich , Zurich , Switzerland
| | - Gökçen Tek
- Department of Chemistry , University of Zurich , Zurich , Switzerland
| | - Jinggang Lan
- Department of Chemistry , University of Zurich , Zurich , Switzerland
| | - Marcella Iannuzzi
- Department of Chemistry , University of Zurich , Zurich , Switzerland
| | - Peter Hamm
- Department of Chemistry , University of Zurich , Zurich , Switzerland
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11
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Kraack JP, Sévery L, Tilley SD, Hamm P. Plasmonic Substrates Do Not Promote Vibrational Energy Transfer at Solid-Liquid Interfaces. J Phys Chem Lett 2018; 9:49-56. [PMID: 29235870 DOI: 10.1021/acs.jpclett.7b02855] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Intermolecular vibrational energy transfer in monolayers of isotopically mixed rhenium carbonyl complexes at solid-liquid interfaces is investigated with the help of ultrafast 2D Attenuated Total Reflectance Infrared (2D ATR IR) spectroscopy in dependence of plasmonic surface enhancement effects. Dielectric and plasmonic materials are used to demonstrate that plasmonic effects have no impact on the vibrational energy transfer rate in a regime of moderate IR surface enhancement (enhancement factors up to ca. 30). This result can be explained with the common image-dipole picture. The vibrational energy transfer rate thus can be used as a direct observable to determine intermolecular distances on surfaces, regardless of their plasmonic properties.
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Affiliation(s)
- Jan Philip Kraack
- Department of Chemistry, University of Zurich , Winterthurerstrasse 190, CH-8057 Zurich, Switzerland
| | - Laurent Sévery
- Department of Chemistry, University of Zurich , Winterthurerstrasse 190, CH-8057 Zurich, Switzerland
| | - S David Tilley
- Department of Chemistry, University of Zurich , Winterthurerstrasse 190, CH-8057 Zurich, Switzerland
| | - Peter Hamm
- Department of Chemistry, University of Zurich , Winterthurerstrasse 190, CH-8057 Zurich, Switzerland
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12
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Yan C, Thomaz JE, Wang YL, Nishida J, Yuan R, Breen JP, Fayer MD. Ultrafast to Ultraslow Dynamics of a Langmuir Monolayer at the Air/Water Interface Observed with Reflection Enhanced 2D IR Spectroscopy. J Am Chem Soc 2017; 139:16518-16527. [DOI: 10.1021/jacs.7b06602] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Chang Yan
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Joseph E. Thomaz
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Yong-Lei Wang
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Jun Nishida
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Rongfeng Yuan
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - John P. Breen
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Michael D. Fayer
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
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13
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Kraack JP. Ultrafast structural molecular dynamics investigated with 2D infrared spectroscopy methods. Top Curr Chem (Cham) 2017; 375:86. [PMID: 29071445 DOI: 10.1007/s41061-017-0172-1] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2017] [Accepted: 10/02/2017] [Indexed: 12/23/2022]
Abstract
Ultrafast, multi-dimensional infrared (IR) spectroscopy has been advanced in recent years to a versatile analytical tool with a broad range of applications to elucidate molecular structure on ultrafast timescales, and it can be used for samples in a many different environments. Following a short and general introduction on the benefits of 2D IR spectroscopy, the first part of this chapter contains a brief discussion on basic descriptions and conceptual considerations of 2D IR spectroscopy. Outstanding classical applications of 2D IR are used afterwards to highlight the strengths and basic applicability of the method. This includes the identification of vibrational coupling in molecules, characterization of spectral diffusion dynamics, chemical exchange of chemical bond formation and breaking, as well as dynamics of intra- and intermolecular energy transfer for molecules in bulk solution and thin films. In the second part, several important, recently developed variants and new applications of 2D IR spectroscopy are introduced. These methods focus on (i) applications to molecules under two- and three-dimensional confinement, (ii) the combination of 2D IR with electrochemistry, (iii) ultrafast 2D IR in conjunction with diffraction-limited microscopy, (iv) several variants of non-equilibrium 2D IR spectroscopy such as transient 2D IR and 3D IR, and (v) extensions of the pump and probe spectral regions for multi-dimensional vibrational spectroscopy towards mixed vibrational-electronic spectroscopies. In light of these examples, the important open scientific and conceptual questions with regard to intra- and intermolecular dynamics are highlighted. Such questions can be tackled with the existing arsenal of experimental variants of 2D IR spectroscopy to promote the understanding of fundamentally new aspects in chemistry, biology and materials science. The final part of the chapter introduces several concepts of currently performed technical developments, which aim at exploiting 2D IR spectroscopy as an analytical tool. Such developments embrace the combination of 2D IR spectroscopy and plasmonic spectroscopy for ultrasensitive analytics, merging 2D IR spectroscopy with ultra-high-resolution microscopy (nanoscopy), future variants of transient 2D IR methods, or 2D IR in conjunction with microfluidics. It is expected that these techniques will allow for groundbreaking research in many new areas of natural sciences.
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Affiliation(s)
- Jan Philip Kraack
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, 8057, Zurich, Switzerland.
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14
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Ghosh A, Ostrander JS, Zanni MT. Watching Proteins Wiggle: Mapping Structures with Two-Dimensional Infrared Spectroscopy. Chem Rev 2017; 117:10726-10759. [PMID: 28060489 PMCID: PMC5500453 DOI: 10.1021/acs.chemrev.6b00582] [Citation(s) in RCA: 176] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Proteins exhibit structural fluctuations over decades of time scales. From the picosecond side chain motions to aggregates that form over the course of minutes, characterizing protein structure over these vast lengths of time is important to understanding their function. In the past 15 years, two-dimensional infrared spectroscopy (2D IR) has been established as a versatile tool that can uniquely probe proteins structures on many time scales. In this review, we present some of the basic principles behind 2D IR and show how they have, and can, impact the field of protein biophysics. We highlight experiments in which 2D IR spectroscopy has provided structural and dynamical data that would be difficult to obtain with more standard structural biology techniques. We also highlight technological developments in 2D IR that continue to expand the scope of scientific problems that can be accessed in the biomedical sciences.
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Affiliation(s)
| | - Joshua S. Ostrander
- Department of Chemistry, University of Wisconsin—Madison, Madison, Wisconsin 53706, United States
| | - Martin T. Zanni
- Department of Chemistry, University of Wisconsin—Madison, Madison, Wisconsin 53706, United States
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15
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Kraack JP, Kaech A, Hamm P. Molecule-specific interactions of diatomic adsorbates at metal-liquid interfaces. STRUCTURAL DYNAMICS (MELVILLE, N.Y.) 2017; 4:044009. [PMID: 28396878 PMCID: PMC5367089 DOI: 10.1063/1.4978894] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/10/2017] [Accepted: 03/06/2017] [Indexed: 05/15/2023]
Abstract
Ultrafast vibrational dynamics of small molecules on platinum (Pt) layers in water are investigated using 2D attenuated total reflectance IR spectroscopy. Isotope combinations of carbon monoxide and cyanide are used to elucidate inter-adsorbate and substrate-adsorbate interactions. Despite observed cross-peaks in the CO spectra, we conclude that the molecules are not vibrationally coupled. Rather, strong substrate-adsorbate interactions evoke rapid (∼2 ps) vibrational relaxation from the adsorbate into the Pt layer, leading to thermal cross-peaks. In the case of CN, vibrational relaxation is significantly slower (∼10 ps) and dominated by adsorbate-solvent interactions, while the coupling to the substrate is negligible.
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Affiliation(s)
- Jan Philip Kraack
- Department of Chemistry, University of Zurich , Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
| | - Andres Kaech
- Center for Microscopy and Image Analysis, University of Zurich , Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
| | - Peter Hamm
- Department of Chemistry, University of Zurich , Winterthurerstrasse 190, CH-8057 Zürich, Switzerland
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16
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Wang J. Ultrafast two-dimensional infrared spectroscopy for molecular structures and dynamics with expanding wavelength range and increasing sensitivities: from experimental and computational perspectives. INT REV PHYS CHEM 2017. [DOI: 10.1080/0144235x.2017.1321856] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Jianping Wang
- Beijing National Laboratory for Molecular Sciences, Molecular Reaction Dynamics Laboratory, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, The Chinese Academy of Sciences, Beijing, P.R. China
- College of Chemistry, University of Chinese Academy of Sciences, Beijing, P.R. China
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Kraack JP, Frei A, Alberto R, Hamm P. Ultrafast Vibrational Energy Transfer in Catalytic Monolayers at Solid-Liquid Interfaces. J Phys Chem Lett 2017; 8:2489-2495. [PMID: 28521090 DOI: 10.1021/acs.jpclett.7b01034] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
We investigate the ultrafast vibrational dynamics of monolayers from adsorbed rhenium-carbonyl CO2-reduction catalysts on a semiconductor surface (indium-tin-oxide (ITO)) with ultrafast two-dimensional attenuated total reflection infrared (2D ATR IR) spectroscopy. The complexes are partially equipped with isotope-labeled (13C) carbonyl ligands to generate two spectroscopically distinguishable forms of the molecules. Ultrafast vibrational energy transfer between the molecules is observed via the temporal evolution of cross-peaks between their symmetric carbonyl stretching vibrations. These contributions appear with time constant of 70 and 90 ps for downhill and uphill energy transfer, respectively. The energy transfer is thus markedly slower than any of the other intramolecular dynamics. From the transfer rate, an intermolecular distance of ∼4-5 Å can be estimated, close to the van der Waals distance of the molecular head groups. The present paper presents an important cornerstone for a better understanding of intermolecular coupling mechanisms of molecules on surfaces and explains the absence of similar features in earlier studies.
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Affiliation(s)
- Jan Philip Kraack
- Department of Chemistry, University of Zurich , Winterthurerstrasse 190, CH-8057 Zurich, Switzerland
| | - Angelo Frei
- Department of Chemistry, University of Zurich , Winterthurerstrasse 190, CH-8057 Zurich, Switzerland
| | - Roger Alberto
- Department of Chemistry, University of Zurich , Winterthurerstrasse 190, CH-8057 Zurich, Switzerland
| | - Peter Hamm
- Department of Chemistry, University of Zurich , Winterthurerstrasse 190, CH-8057 Zurich, Switzerland
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Kraack JP, Hamm P. Surface-Sensitive and Surface-Specific Ultrafast Two-Dimensional Vibrational Spectroscopy. Chem Rev 2016; 117:10623-10664. [DOI: 10.1021/acs.chemrev.6b00437] [Citation(s) in RCA: 95] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Jan Philip Kraack
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, CH-8057, Zurich, Switzerland
| | - Peter Hamm
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, CH-8057, Zurich, Switzerland
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Kraack JP, Hamm P. Vibrational ladder-climbing in surface-enhanced, ultrafast infrared spectroscopy. Phys Chem Chem Phys 2016; 18:16088-93. [PMID: 27265518 DOI: 10.1039/c6cp02589g] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In a recent work (J. Phys. Chem. C 2016, 120, 3350-3359), we have introduced the concept of surface-enhanced, two-dimensional attenuated total reflectance (2D ATR IR) spectroscopy with modest enhancement factors (<50) using small plasmonic noble metal nanoparticles at solid-liquid interfaces. Here, we show that employment of almost continuous noble metal layers results in significantly stronger enhancement factors in 2D ATR IR signals (>450), which allows for multi-quantum IR excitation of adsorbed molecules, a process known as "vibrational ladder-climbing", even for weakly absorbing (ε < 200 M(-1) cm(-1)) nitrile IR labels. We show that it is possible to deposit up to four quanta of vibrational energy in the respective functional group. Based on these results, optical near-fields of plasmonic nanostructures may pave the way for future investigations involving ultrafast dynamics of highly excited vibrational states or surface-sensitive coherent control experiments of ground-state reactions at solid-liquid interfaces.
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Affiliation(s)
- Jan Philip Kraack
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, CH-8057, Zürich, Switzerland.
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Two-dimensional infrared spectroscopy measures the structural dynamics of a self-assembled film only one molecule thick. Proc Natl Acad Sci U S A 2016; 113:4890-1. [PMID: 27095845 DOI: 10.1073/pnas.1605263113] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
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21
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Unraveling the dynamics and structure of functionalized self-assembled monolayers on gold using 2D IR spectroscopy and MD simulations. Proc Natl Acad Sci U S A 2016; 113:4929-34. [PMID: 27044113 DOI: 10.1073/pnas.1603080113] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Functionalized self-assembled monolayers (SAMs) are the focus of ongoing investigations because they can be chemically tuned to control their structure and dynamics for a wide variety of applications, including electrochemistry, catalysis, and as models of biological interfaces. Here we combine reflection 2D infrared vibrational echo spectroscopy (R-2D IR) and molecular dynamics simulations to determine the relationship between the structures of functionalized alkanethiol SAMs on gold surfaces and their underlying molecular motions on timescales of tens to hundreds of picoseconds. We find that at higher head group density, the monolayers have more disorder in the alkyl chain packing and faster dynamics. The dynamics of alkanethiol SAMs on gold are much slower than the dynamics of alkylsiloxane SAMs on silica. Using the simulations, we assess how the different molecular motions of the alkyl chain monolayers give rise to the dynamics observed in the experiments.
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