1
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Penkov NV. Peculiarities of the Dynamical Hydration Shell of Native Conformation Protein Using a Bovine Serum Albumin Example. APPLIED SPECTROSCOPY 2024:37028241261097. [PMID: 38881287 DOI: 10.1177/00037028241261097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2024]
Abstract
This paper describes an approach based on the method of terahertz time-domain spectroscopy, which allows the analysis of dynamical hydration shells of proteins with a thickness of 1-2 nm. Using the example of bovine serum albumin in three conformations, it is shown that the hydration shells of the protein are characterized by increased binding of water molecules in the primary hydration layers, and in more distant areas of hydration, on the contrary, the water structure is somewhat destroyed. The fraction of free or weakly bound molecules, usually observed in the structure of liquid water in hydration shells, become more numerous but its average binding is greater than in undisturbed water. The energy distribution of hydrogen bonds in hydration shells is narrowed compared to undisturbed water. All these manifestations of hydration are most pronounced for the native conformation of the protein. Also, the hydration shells of the native protein are characterized by a smaller number of hydrogen bonds and a tendency to decrease their average energy compared to non-native conformations. The fact of a pronounced peculiarity of the hydration shells of the protein in the native conformation has been noted for different proteins before. However, the methodological approach used in this work for the first time allowed this peculiarity to be described by specific parameters of the intermolecular structure and dynamics of water.
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Affiliation(s)
- Nikita V Penkov
- Institute of Cell Biophysics, Federal Research Center, Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences, Pushchino, Russia
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2
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Bakó I, Pusztai L, Pothoczki S. Outstanding Properties of the Hydration Shell around β-d-Glucose: A Computational Study. ACS OMEGA 2024; 9:20331-20337. [PMID: 38737074 PMCID: PMC11080014 DOI: 10.1021/acsomega.4c00798] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/24/2024] [Revised: 04/10/2024] [Accepted: 04/12/2024] [Indexed: 05/14/2024]
Abstract
Ab initio molecular dynamics (AIMD) simulations have been performed on aqueous solutions of four simple sugars, α-d-glucose, β-d-glucose, α-d-mannose, and α-d-galactose. Hydrogen-bonding (HB) properties, such as the number of donor- and acceptor-type HB-s, and the lengths and strengths of hydrogen bonds between sugar and water molecules, have been determined. Related electronic properties, such as the dipole moments of water molecules and partial charges of the sugar O atoms, have also been calculated. The hydrophilic and hydrophobic shells were characterized by means of spatial distribution functions. β-d-Glucose was found to form the highest number of hydrophilic and the smallest number of hydrophobic connections to neighboring water molecules. The average sugar-water H-bond length was the shortest for β-d-glucose, which suggests that these are the strongest such H-bonds. Furthermore, β-d-glucose appears to stand out in terms of the symmetry properties of both its hydrophilic and hydrophobic hydration shells. In summary, in all aspects considered here, there seems to be a correlation between the distinct characteristics of β-d-glucose reported here and its outstanding solubility in water. Admittedly, our findings represent only some of the important factors that influence the solubility.
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Affiliation(s)
- Imre Bakó
- HUN-REN
Research Centre for Natural Sciences, Magyar tudósok körútja 2., H-1117 Budapest, Hungary
| | - László Pusztai
- HUN-REN
Wigner Research Centre for Physics, Konkoly-Thege M. út 29-33., H-1121 Budapest, Hungary
- International
Research Organization for Advanced Science and Technology (IROAST), Kumamoto University, 2-39-1 Kurokami, Chuo-ku, Kumamoto 860-8555, Japan
| | - Szilvia Pothoczki
- HUN-REN
Wigner Research Centre for Physics, Konkoly-Thege M. út 29-33., H-1121 Budapest, Hungary
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3
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Fukada K, Nakamura M, Tajima T, Hayashi K. Noninvasive Glucose Sensing in Dielectrically Equivalent Multilayer Skin Phantoms. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2023; 39:15208-15214. [PMID: 37846062 DOI: 10.1021/acs.langmuir.3c01827] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2023]
Abstract
The interstitial fluid of the skin contains glucose levels comparable to those of blood. Noninvasive glucose sensing by microwaves has great potential to relieve diabetics from the burden of daily blood sampling, but improving the selectivity of this method remains a challenge. This study reports a dielectrically equivalent multilayer skin phantom and provides insight into the criteria for noninvasive glucose sensing by conducting dielectric analysis. The skin phantom was a hydrogel composed of gelatin, glucose, sodium chloride, and water covered by paraffin-impregnated paper. Investigations conducted on a wide range of component concentrations revealed characteristic relative permittivity and dielectric loss determined by the amount of electrolyte and solution that was independent of the amount of glucose. Since the microwave response due to glucose tends to be buried in noise, we developed a flowchart that first identifies the amounts of electrolytes and proteins, which are the major components other than glucose, and then quantifies the remaining glucose content. This noninvasive glucose sensing method would not be limited to the medical healthcare field; it could potentially be used in food manufacturing processes, livestock farming, and plant cultivation management.
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Affiliation(s)
- Kenta Fukada
- NTT Device Technology Laboratories, NTT Corporation, 3-1 Morinosato, Wakamiya, Atsugi 243-0198, Kanagawa, Japan
- Bio-Medical and Informatics Research Center, NTT Basic Research Laboratories, NTT Corporation, 3-1 Morinosato, Wakamiya, Atsugi 243-0198, Kanagawa, Japan
| | - Masahito Nakamura
- NTT Device Technology Laboratories, NTT Corporation, 3-1 Morinosato, Wakamiya, Atsugi 243-0198, Kanagawa, Japan
- Bio-Medical and Informatics Research Center, NTT Basic Research Laboratories, NTT Corporation, 3-1 Morinosato, Wakamiya, Atsugi 243-0198, Kanagawa, Japan
| | - Takuro Tajima
- NTT Device Technology Laboratories, NTT Corporation, 3-1 Morinosato, Wakamiya, Atsugi 243-0198, Kanagawa, Japan
- Bio-Medical and Informatics Research Center, NTT Basic Research Laboratories, NTT Corporation, 3-1 Morinosato, Wakamiya, Atsugi 243-0198, Kanagawa, Japan
| | - Katsuyoshi Hayashi
- NTT Device Technology Laboratories, NTT Corporation, 3-1 Morinosato, Wakamiya, Atsugi 243-0198, Kanagawa, Japan
- Bio-Medical and Informatics Research Center, NTT Basic Research Laboratories, NTT Corporation, 3-1 Morinosato, Wakamiya, Atsugi 243-0198, Kanagawa, Japan
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4
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Penkov NV. Terahertz spectroscopy as a method for investigation of hydration shells of biomolecules. Biophys Rev 2023; 15:833-849. [PMID: 37974994 PMCID: PMC10643733 DOI: 10.1007/s12551-023-01131-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2023] [Accepted: 08/30/2023] [Indexed: 11/19/2023] Open
Abstract
The hydration of biomolecules is one of the fundamental processes underlying the construction of living matter. The formation of the native conformation of most biomolecules is possible only in an aqueous environment. At the same time, not only water affects the structure of biomolecules, but also biomolecules affect the structure of water, forming hydration shells. However, the study of the structure of biomolecules is given much more attention than their hydration shells. A real breakthrough in the study of hydration occurred with the development of the THz spectroscopy method, which showed that the hydration shell of biomolecules is not limited to 1-2 layers of strongly bound water, but also includes more distant areas of hydration with altered molecular dynamics. This review examines the fundamental features of the THz frequency range as a source of information about the structural and dynamic characteristics of water that change during hydration. The applied approaches to the study of hydration shells of biomolecules based on THz spectroscopy are described. The data on the hydration of biomolecules of all main types obtained from the beginning of the application of THz spectroscopy to the present are summarized. The emphasis is placed on the possible participation of extended hydration shells in the realization of the biological functions of biomolecules and at the same time on the insufficient knowledge of their structural and dynamic characteristics.
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Affiliation(s)
- Nikita V. Penkov
- Federal Research Center “Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences”, Institute of Cell Biophysics RAS, 142290 Pushchino, Russia
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5
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Zhang J, Matsuura H, Shirakashi R. A method for measuring dielectric relaxation of water by
NIR
spectroscopy: Applicability and application to measurement of water diffusion coefficient. J FOOD PROCESS ENG 2023. [DOI: 10.1111/jfpe.14335] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2023]
Affiliation(s)
- Junkai Zhang
- Institute of Industrial Science The University of Tokyo 4‐6‐1 Komaba, Meguro City Tokyo 153‐8505 Japan
| | - Hiroaki Matsuura
- Institute of Industrial Science The University of Tokyo 4‐6‐1 Komaba, Meguro City Tokyo 153‐8505 Japan
| | - Ryo Shirakashi
- Institute of Industrial Science The University of Tokyo 4‐6‐1 Komaba, Meguro City Tokyo 153‐8505 Japan
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6
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Hu K, Shirakashi R. Molecular dynamics study of water rotational relaxation in saccharide solution for the development of bioprotective agent. J Mol Liq 2023. [DOI: 10.1016/j.molliq.2023.121707] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/29/2023]
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7
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Zhang J, Matsuura H, Shirakashi R. Prediction of water relaxation time using near infrared spectroscopy. J FOOD PROCESS ENG 2022. [DOI: 10.1111/jfpe.14095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Junkai Zhang
- Institute of Industrial Science, The University of Tokyo Tokyo Japan
| | - Hiroaki Matsuura
- Institute of Industrial Science, The University of Tokyo Tokyo Japan
- Research Fellow of the Japan Society for the Promotion of Science Tokyo Japan
| | - Ryo Shirakashi
- Institute of Industrial Science, The University of Tokyo Tokyo Japan
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8
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Water structure in glycerol: Spectroscopic and computer simulation investigation of hydrogen bonding and water clustering. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.118916] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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9
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Hishida M, Anjum R, Anada T, Murakami D, Tanaka M. Effect of Osmolytes on Water Mobility Correlates with Their Stabilizing Effect on Proteins. J Phys Chem B 2022; 126:2466-2475. [DOI: 10.1021/acs.jpcb.1c10634] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Mafumi Hishida
- Department of Chemistry, Faculty of Pure and Applied Sciences, University of Tsukuba, Tsukuba, Ibaraki 305-8571, Japan
| | - Rubaiya Anjum
- Department of Chemistry and Biochemistry, Graduate School of Engineering, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Takahisa Anada
- Department of Chemistry and Biochemistry, Graduate School of Engineering, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
- Institute for Materials Chemistry and Engineering, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Daiki Murakami
- Department of Chemistry and Biochemistry, Graduate School of Engineering, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
- Institute for Materials Chemistry and Engineering, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
| | - Masaru Tanaka
- Department of Chemistry and Biochemistry, Graduate School of Engineering, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
- Institute for Materials Chemistry and Engineering, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan
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10
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Noda N, Jung Y, Ado G, Mizuhata Y, Higuchi M, Ogawa T, Ishidate F, Sato SI, Kurata H, Tokitoh N, Uesugi M. Glucose as a Protein-Condensing Cellular Solute. ACS Chem Biol 2022; 17:567-575. [PMID: 35188733 DOI: 10.1021/acschembio.1c00849] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The present study reports a surprising protein-condensing effect of glucose, prompted by our accidental observation during chemical library screening under a high-glucose condition. We noticed "glucosing-out" of certain compounds, in which physiological concentrations of glucose induced compound aggregation. Adapting the "glucosing-out" concept to proteins, our proteomic analysis identified three cellular proteins (calmodulin, rho guanine nucleotide exchange factor 40, and polyubiquitin-C) that displayed robust glucose-dependent precipitation. One of these proteins, calmodulin, formed glucose-dependent condensates that control cellular glycogenolysis in hepatic cells. Our findings suggest that glucose is a heretofore underappreciated driver of protein phase separation that may have profound effects on cellular homeostasis.
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Affiliation(s)
- Naotaka Noda
- Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan
- Graduate School of Medicine, Kyoto University, Uji, Kyoto 611-0011, Japan
| | - Yejin Jung
- Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan
- Graduate School of Medicine, Kyoto University, Uji, Kyoto 611-0011, Japan
| | - Genyir Ado
- Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan
- Graduate School of Medicine, Kyoto University, Uji, Kyoto 611-0011, Japan
| | - Yoshiyuki Mizuhata
- Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan
| | - Masakazu Higuchi
- Institute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University, Uji, Kyoto 611-0011, Japan
| | - Tetsuya Ogawa
- Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan
| | - Fumiyoshi Ishidate
- Institute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University, Uji, Kyoto 611-0011, Japan
| | - Shin-ichi Sato
- Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan
| | - Hiroki Kurata
- Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan
| | - Norihiro Tokitoh
- Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan
| | - Motonari Uesugi
- Institute for Chemical Research, Kyoto University, Uji, Kyoto 611-0011, Japan
- Institute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University, Uji, Kyoto 611-0011, Japan
- School of Pharmacy, Fudan University, Shanghai 201203, China
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11
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Dielectric determination of glucose solutions under microwave fields via a novel molecular dynamics simulation approach. J FOOD ENG 2022. [DOI: 10.1016/j.jfoodeng.2021.110844] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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12
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Hu J, Liao Z, Yano Y, Yamahara H, Tabata H. Broadband Dielectric Spectroscopic Analysis toward Characterization of the Hydration State and Bioprotective Superiority of Trehalose. J Phys Chem B 2022; 126:708-715. [PMID: 35040322 DOI: 10.1021/acs.jpcb.1c09941] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Alteration of the hydrogen-bond (H-bond) network by trehalose is acknowledged as a bioprotective agent. However, most studies exploring the hydration superiority of the trehalose structure are limited structure are limited by the computational cost or a narrow-range spectrum. In the present study, the structural and dynamical behaviors of the H-bond network of trehalose and maltose solutions were observed and compared with a broadband dielectric spectrum (100 MHz-18 THz) to investigate the influence of the trehalose structure on the bioprotective function. From the relaxation time, the reorientation cooperativity, resonant frequency, and damping constant of water-water vibration, the symmetric structure of trehalose allowed a more significant H-bond strengthening effect and homogeneous aqueous environment. In contrast, the difference in the hydration number between trehalose and maltose was negligible. Thus, the enhanced H-bond strengthening effect and homogeneous aqueous environment owing to the symmetric structure are the essential factors that contribute to the remarkable bioprotective effect of trehalose.
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Affiliation(s)
- Junru Hu
- Department of Electrical Engineering and Information Systems, Graduate School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Zhiqiang Liao
- Department of Electrical Engineering and Information Systems, Graduate School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Yasuo Yano
- Department of Bioengineering, Graduate School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Hiroyasu Yamahara
- Department of Electrical Engineering and Information Systems, Graduate School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Hitoshi Tabata
- Department of Electrical Engineering and Information Systems, Graduate School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan.,Department of Bioengineering, Graduate School of Engineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
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13
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Li D, Zhu Z, Sun DW. Quantification of hydrogen bonding strength of water in saccharide aqueous solutions by confocal Raman microscopy. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.117498] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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14
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Hou J, Abie SM, Strand-Amundsen R, Galperin YM, Bergli J, Schuelke C, Hashemizadeh S, Martinsen ØG. Temperature dependence of the microwave dielectric properties of [Formula: see text]-aminobutyric acid. Sci Rep 2021; 11:18082. [PMID: 34508109 PMCID: PMC8433407 DOI: 10.1038/s41598-021-97178-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2021] [Accepted: 08/23/2021] [Indexed: 11/09/2022] Open
Abstract
The GABA molecule is the major inhibitory neurotransmitter in the mammalian central nervous system. Through binding to post-synaptic neurons, GABA reduces the neuronal excitability by hyperpolarization. Correct binding between the GABA molecules and its receptors relies on molecular recognition. Earlier studies suggest that recognition is determined by the geometries of the molecule and its receptor. We employed dielectric relaxation spectroscopy (DRS) to study the conformation and dielectric properties of the GABA molecule under physiologically relevant laboratory conditions. The dielectric properties of GABA investigated have given us new insights about the GABA molecule, such as how they interact with each other and with water molecules at different temperatures (22°C and 37.5°C). Higher temperature leads to lower viscosity, thus lower relaxation time. The change in the GABA relaxation time due to concentration change is more associated with the solution viscosity than with the GABA dipole moment. A resonance behavior was observed with high GABA concentrations at physiological temperature, where there might be a phase transition at a certain temperature for a given GABA concentration that leads to a sudden change of the dielectric properties.
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Affiliation(s)
- Jie Hou
- Department of Physics, University of Oslo, Sem Sælands vei 24, 0371 Oslo, Norway
- Department of Clinical and Biomedical Engineering, Oslo University Hospital, Sognsvannsveien 20, 0372 Oslo, Norway
| | - Sisay Mebre Abie
- Department of Physics, University of Oslo, Sem Sælands vei 24, 0371 Oslo, Norway
| | - Runar Strand-Amundsen
- Department of Clinical and Biomedical Engineering, Oslo University Hospital, Sognsvannsveien 20, 0372 Oslo, Norway
| | - Yuri M. Galperin
- Department of Physics, University of Oslo, Sem Sælands vei 24, 0371 Oslo, Norway
- A. F. Ioffe Physico-Technical Institute of Russian Academy of Sciences, Polytekhnicheskaya 26, St. Petersburg, Russia 194021
| | - Joakim Bergli
- Department of Physics, University of Oslo, Sem Sælands vei 24, 0371 Oslo, Norway
| | - Christin Schuelke
- Department of Physics, University of Oslo, Sem Sælands vei 24, 0371 Oslo, Norway
| | - Sina Hashemizadeh
- Foundation for Research on Information Technologies in Society (IT’IS), Zeughausstrasse 43, 8004 Zurich, Switzerland
| | - Ørjan Grøttem Martinsen
- Department of Physics, University of Oslo, Sem Sælands vei 24, 0371 Oslo, Norway
- Department of Clinical and Biomedical Engineering, Oslo University Hospital, Sognsvannsveien 20, 0372 Oslo, Norway
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15
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Microwave Planar Resonant Solutions for Glucose Concentration Sensing: A Systematic Review. APPLIED SCIENCES-BASEL 2021. [DOI: 10.3390/app11157018] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
The measurement of glucose concentration finds interesting potential applications in both industry and biomedical contexts. Among the proposed solutions, the use of microwave planar resonant sensors has led to remarkable scientific activity during the last years. These sensors rely on the changes in the dielectric properties of the medium due to variations in the glucose concentration. These devices show electrical responses dependent on the surrounding dielectric properties, and therefore the changes in their response can be related to variations in the glucose content. This work shows an up-to-date review of this sensing approach after more than one decade of research and development. The attempts involved are sorted by the sensing parameter, and the computation of a common relative sensitivity to glucose is proposed as general comparison tool. The manuscript also discusses the key points of each sensor category and the possible future lines and challenges of the sensing approach.
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16
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Tao Y, Yan B, Zhang N, Wang M, Zhao J, Zhang H, Chen W, Fan D. Microwave vacuum evaporation as a potential technology to concentrate sugar solutions: A study based on dielectric spectroscopy. J FOOD ENG 2021. [DOI: 10.1016/j.jfoodeng.2020.110414] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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17
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Liu Y, Zhao K, Ma Q. Insight into the glucose cosolvent induced gelation of κ-carrageenan by broadband dielectric spectroscopy. J Mol Liq 2020. [DOI: 10.1016/j.molliq.2020.114268] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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18
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Arai K, Shikata T. Hydration/Dehydration Behavior of Hydroxyethyl Cellulose Ether in Aqueous Solution. Molecules 2020; 25:molecules25204726. [PMID: 33076298 PMCID: PMC7587591 DOI: 10.3390/molecules25204726] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2020] [Revised: 10/05/2020] [Accepted: 10/12/2020] [Indexed: 12/03/2022] Open
Abstract
Hydroxyethyl cellulose (HeC) maintains high water solubility over a wide temperature range even in a high temperature region where other nonionic chemically modified cellulose ethers, such as methyl cellulose (MC) and hydroxypropylmethyl cellulose (HpMC), demonstrate cloud points. In order to clarify the reason for the high solubility of HeC, the temperature dependence of the hydration number per glucopyranose unit, nH, for the HeC samples was examined by using extremely high frequency dielectric spectrum measuring techniques up to 50 GHz over a temperature range from 10 to 70 °C. HeC samples with a molar substitution number (MS) per glucopyranose unit by hydroxyethyl groups ranging from 1.3 to 3.6 were examined in this study. All HeC samples dissolve into water over the examined temperature range and did not show their cloud points. The value of nH for the HeC sample possessing the MS of 1.3 was 14 at 20 °C and decreased gently with increasing temperature and declined to 10 at 70 °C. The nH values of the HeC samples are substantially larger than the minimum critical nH value of ca. 5 necessary to be dissolved into water for cellulose ethers such as MC and HpMC, even in a high temperature range. Then, the HeC molecules possess water solubility over the wide temperature range. The temperature dependence of nH for the HeC samples and triethyleneglycol, which is a model compound for substitution groups of HeC, is gentle and they are similar to each other. This observation strongly suggests that the hydration/dehydration behavior of the HeC samples was essentially controlled by that of their substitution groups.
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Affiliation(s)
- Kengo Arai
- Cellulose Research Unit, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo 183-8509, Japan;
| | - Toshiyuki Shikata
- Cellulose Research Unit, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo 183-8509, Japan;
- Division of Natural Resources and Eco-materials, Graduate School of Agriculture, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo 183-8509, Japan
- Correspondence:
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19
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Liu Y, Yang M, Gao Y, Fan X, Zhao K. Broadband dielectric properties of honey: effects of temperature. JOURNAL OF FOOD SCIENCE AND TECHNOLOGY 2020; 57:1656-1660. [PMID: 32327776 DOI: 10.1007/s13197-019-04198-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Revised: 10/24/2019] [Accepted: 12/05/2019] [Indexed: 11/28/2022]
Abstract
Dielectric properties of jujube honey were investigated at 298-358 K by broadband dielectric measurements. Four relaxation processes were observed and analyzed, which are caused by long range correlation of density fluctuation, cooperative motions of molecules, rotational polarization of bound water and collective reorientation of free water, respectively. The results of temperature dependence of dielectric parameters show that with increasing temperature, the interaction among the molecules e.g. water, fructose and glucose molecules etc. weaken, and the honey gradually forms a complete sugar solution. At a given temperature, the penetration depth at 27 MHz is much greater than that at 915 MHz and 2.45 GHz. And based on the calculated penetration depth, dielectric heating at 27 MHz seems to has more advantages for large volume of materials.
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Affiliation(s)
- Yuan Liu
- College of Chemistry, Beijing Normal University, Beijing, 100875 China
| | - Man Yang
- College of Chemistry, Beijing Normal University, Beijing, 100875 China
| | - Yanyan Gao
- College of Chemistry, Beijing Normal University, Beijing, 100875 China
| | - Xiaoqing Fan
- College of Chemistry, Beijing Normal University, Beijing, 100875 China
| | - Kongshuang Zhao
- College of Chemistry, Beijing Normal University, Beijing, 100875 China
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20
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Shukla N, Goeks J, Taylor EA, Othon CM. Hydration Dynamics in Solutions of Cyclic Polyhydroxyl Osmolytes. J Phys Chem B 2019; 123:8472-8479. [PMID: 31508961 DOI: 10.1021/acs.jpcb.9b06861] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Simple sugars are remarkably effective at preserving protein and enzymatic structures against thermal and hydrostatic stress. Here, we investigate the hydrodynamic and biopreservative properties of three small cyclic molecules: glucose, myo-inositol, and methyl-α-d-glucopyranoside using circular dichroism spectroscopy and isothermal calorimetry. Using ultrafast fluorescence frequency upconversion spectroscopy, we measure the dynamical retardation of hydration dynamics in cosolute solutions. We find that all three molecules are effective modifiers of hydration dynamics in solution and all are also effective at protecting model protein systems against thermal denaturation. Methyl-α-d-glucopyranoside is found to be the most effective dynamic reducer displaying an approximately 30% increase in solvation relaxation time as compared to water in a cosolute free solution. myo-Inositol and glucose both exhibit a smaller reduction in dynamics with similar magnitudes of concentration dependence. Using these cosolute models, we demonstrate that the thermal enhancement of protein structure does not correlate strongly with either the dynamical reduction of the bulk solution nor with the number of hydrogen bonds a cosolute makes with the solvent. Furthermore, solutions of glucose at twice the concentration of trehalose are shown to have similar magnitudes of dynamical impact. This implies that regulation of hydration dynamics is not a distinguishing characteristic of successful osmolytes. This work highlights the need for further studies and computational analysis to understand the phenomena of preferential exclusion and the contribution of hydration dynamics to protein structural stability.
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Affiliation(s)
| | - Julia Goeks
- Department of Physics , Ripon College , Ripon , Wisconsin 54971 , United States
| | | | - Christina M Othon
- Department of Physics , Ripon College , Ripon , Wisconsin 54971 , United States
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21
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Laurinavichyute VK, Shermukhamedov SA, Peshkova MA, Nazmutdinov RR, Tsirlina GA. Electrolyte in heterogeneous water-glucose mixtures: A view from experiment and molecular modeling. Chem Phys 2019. [DOI: 10.1016/j.chemphys.2019.110440] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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22
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Glucose Concentration Measurement in Human Blood Plasma Solutions with Microwave Sensors. SENSORS 2019; 19:s19173779. [PMID: 31480415 PMCID: PMC6749577 DOI: 10.3390/s19173779] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/29/2019] [Revised: 08/27/2019] [Accepted: 08/28/2019] [Indexed: 12/29/2022]
Abstract
Three microwave sensors are used to track the glucose level of different human blood plasma solutions. In this paper, the sensors are evaluated as glucose trackers in a context close to real human blood. Different plasma solutions sets were prepared from a human blood sample at several added glucose concentrations up to 10 wt%, adding also ascorbic acid and lactic acid at different concentrations. The experimental results for the different sensors/solutions combinations are presented in this work. The sensors show good performance and linearity as glucose level retrievers, although the sensitivities change as the rest of components vary. Different sensor behaviors depending upon the concentrations of glucose and other components are identified and characterized. The results obtained in terms of sensitivity are coherent with previous works, highlighting the contribution of glucose to the dielectric losses of the solution. The results are also consistent with the frequency evolution of the electromagnetic signature of glucose found in the literature, and are helpful for selecting frequency bands for sensing purposes and envisioning future approaches to the challenging measurement in real biological contexts. Discussion of the implications of the results and guidelines for further research and development of more accurate sensors is offered.
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23
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Heid E, Honegger P, Braun D, Szabadi A, Stankovic T, Steinhauser O, Schröder C. Computational spectroscopy of trehalose, sucrose, maltose, and glucose: A comprehensive study of TDSS, NQR, NOE, and DRS. J Chem Phys 2019; 150:175102. [DOI: 10.1063/1.5095058] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023] Open
Affiliation(s)
- Esther Heid
- University of Vienna, Faculty of Chemistry, Department of Computational Biological Chemistry, Währingerstraße 17, A-1090 Vienna, Austria
| | - Philipp Honegger
- University of Vienna, Faculty of Chemistry, Department of Computational Biological Chemistry, Währingerstraße 17, A-1090 Vienna, Austria
| | - Daniel Braun
- University of Vienna, Faculty of Chemistry, Department of Computational Biological Chemistry, Währingerstraße 17, A-1090 Vienna, Austria
- Department of Structural and Computational Biology, Max F. Perutz Laboratories, University of Vienna, Campus Vienna Biocenter 5, 1030 Vienna, Austria
| | - András Szabadi
- University of Vienna, Faculty of Chemistry, Department of Computational Biological Chemistry, Währingerstraße 17, A-1090 Vienna, Austria
| | - Toda Stankovic
- University of Vienna, Faculty of Chemistry, Department of Computational Biological Chemistry, Währingerstraße 17, A-1090 Vienna, Austria
| | - Othmar Steinhauser
- University of Vienna, Faculty of Chemistry, Department of Computational Biological Chemistry, Währingerstraße 17, A-1090 Vienna, Austria
| | - Christian Schröder
- University of Vienna, Faculty of Chemistry, Department of Computational Biological Chemistry, Währingerstraße 17, A-1090 Vienna, Austria
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24
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Arai K, Shikata T. Molecular motions, structure and hydration behaviour of glucose oligomers in aqueous solution. Phys Chem Chem Phys 2019; 21:25379-25388. [DOI: 10.1039/c9cp05214c] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The presence of helical fragment configurations is confirmed for glucose oligomers in aqueous solution at temperatures lower than 40 °C.
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Affiliation(s)
- Kengo Arai
- Department of Symbiotic Science of Environment and Natural Resources
- The United Graduate School of Agricultural Science
- Tokyo University of Agriculture and Technology
- Tokyo 183-8509
- Japan
| | - Toshiyuki Shikata
- Department of Symbiotic Science of Environment and Natural Resources
- The United Graduate School of Agricultural Science
- Tokyo University of Agriculture and Technology
- Tokyo 183-8509
- Japan
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25
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26
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Płowaś-Korus I, Buchner R. Structure, molecular dynamics, and interactions in aqueous xylitol solutions. Phys Chem Chem Phys 2019; 21:24061-24069. [DOI: 10.1039/c9cp04547c] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Broad-band dielectric relaxation studies of xylitol-water mixture show distinctly different dynamics for distal and central –OH of xylitol molecules and indicates the presence of loose xylitol aggregates.
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Affiliation(s)
- Iwona Płowaś-Korus
- Institute of Molecular Physics
- Polish Academy of Sciences
- 60-179 Poznań
- Poland
| | - Richard Buchner
- Institut für Physikalische und Theoretische Chemie
- Universität Regensburg
- 93040 Regensburg
- Germany
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27
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Shiraga K, Adachi A, Nakamura M, Tajima T, Ajito K, Ogawa Y. Characterization of the hydrogen-bond network of water around sucrose and trehalose: Microwave and terahertz spectroscopic study. J Chem Phys 2018; 146:105102. [PMID: 28298096 DOI: 10.1063/1.4978232] [Citation(s) in RCA: 53] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Modification of the water hydrogen bond network imposed by disaccharides is known to serve as a bioprotective agent in living organisms, though its comprehensive understanding is still yet to be reached. In this study, aiming to characterize the dynamical slowing down and destructuring effect of disaccharides, we performed broadband dielectric spectroscopy, ranging from 0.5 GHz to 12 THz, of sucrose and trehalose aqueous solutions. The destructuring effect was examined in two ways (the hydrogen bond fragmentation and disordering) and our result showed that both sucrose and trehalose exhibit an obvious destructuring effect with a similar strength, by fragmenting hydrogen bonds and distorting the tetrahedral-like structure of water. This observation strongly supports a chaotropic (structure-breaking) aspect of disaccharides on the water structure. At the same time, hydration water was found to exhibit slower dynamics and a greater reorientational cooperativity than bulk water because of the strengthened hydrogen bonds. These results lead to the conclusion that strong disaccharide-water hydrogen bonds structurally incompatible with native water-water bonds lead to the rigid but destructured hydrogen bond network around disaccharides. Another important finding in this study is that the greater dynamical slowing down of trehalose was found compared with that of sucrose, at variance with the destructuring effect where no solute dependent difference was observed. This discovery suggests that the exceptionally greater bioprotective impact especially of trehalose among disaccharides is mainly associated with the dynamical slowing down (rather than the destructuring effect).
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Affiliation(s)
- Keiichiro Shiraga
- Graduate School of Agriculture, Kyoto University, Kitashirakawa-oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Aya Adachi
- Graduate School of Agriculture, Kyoto University, Kitashirakawa-oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Masahito Nakamura
- NTT Device Technology Labs, NTT Corporation, Morinosato Wakamiya, Atsugi-shi, Kanagawa 243-0198, Japan
| | - Takuro Tajima
- NTT Device Technology Labs, NTT Corporation, Morinosato Wakamiya, Atsugi-shi, Kanagawa 243-0198, Japan
| | - Katsuhiro Ajito
- NTT Device Technology Labs, NTT Corporation, Morinosato Wakamiya, Atsugi-shi, Kanagawa 243-0198, Japan
| | - Yuichi Ogawa
- Graduate School of Agriculture, Kyoto University, Kitashirakawa-oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan
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28
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van Enter BJ, von Hauff E. Challenges and perspectives in continuous glucose monitoring. Chem Commun (Camb) 2018; 54:5032-5045. [PMID: 29687110 DOI: 10.1039/c8cc01678j] [Citation(s) in RCA: 55] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Diabetes is a global epidemic that threatens the health and well-being of hundreds of millions of people. The first step in patient treatment is to monitor glucose levels. Currently this is most commonly done using enzymatic strips. This approach suffers from several limitations, namely it requires a blood sample and is therefore invasive, the quality and the stability of the enzymatic strips vary widely, and the patient is burdened by performing the measurement themselves. This results in dangerous fluctuations in glucose levels often going undetected. There is currently intense research towards new approaches in glucose detection that would enable non-invasive continuous glucose monitoring (CGM). In this review, we explore the state-of-the-art in glucose detection technologies. In particular, we focus on the physical mechanisms behind different approaches, and how these influence and determine the accuracy and reliability of glucose detection. We begin by reviewing the basic physical and chemical properties of the glucose molecule. Although these play a central role in detection, especially the anomeric ratio, they are surprisingly often overlooked in the literature. We then review state-of-the art and emerging detection methods. Finally, we survey the current market for glucometers. Recent results show that past challenges in glucose detection are now being overcome, thereby enabling the development of smart wearable devices for non-invasive continuous glucose monitoring. These new directions in glucose detection have enormous potential to improve the quality of life of millions of diabetics, as well as offer insight into the development, treatment and even prevention of the disease.
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Affiliation(s)
- Benjamin Jasha van Enter
- Physics of Energy Department of Physics and Astronomy, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, The Netherlands.
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29
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Shiraga K, Ogawa Y, Tanaka K, Arikawa T, Yoshikawa N, Nakamura M, Ajito K, Tajima T. Coexistence of Kosmotropic and Chaotropic Impacts of Urea on Water As Revealed by Terahertz Spectroscopy. J Phys Chem B 2018; 122:1268-1277. [DOI: 10.1021/acs.jpcb.7b11839] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Keiichiro Shiraga
- RIKEN Center for Integrative Medical Sciences (IMS), Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
| | | | - Koichiro Tanaka
- Institute
for Integrated Cell-Material Sciences (iCeMS), Kyoto University, Sakyo-ku, Kyoto 606-8501, Japan
| | | | | | - Masahito Nakamura
- NTT
Device Technology Labs, NTT Corporation, Morinosato Wakamiya, Atsugi, Kanagawa 243-0198, Japan
| | - Katsuhiro Ajito
- NTT
Device Technology Labs, NTT Corporation, Morinosato Wakamiya, Atsugi, Kanagawa 243-0198, Japan
| | - Takuro Tajima
- NTT
Device Technology Labs, NTT Corporation, Morinosato Wakamiya, Atsugi, Kanagawa 243-0198, Japan
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30
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Nakamura M, Tanaka Y, Tajima T. Frequency-range optimized preprocessing methods for quantitative analysis of glucose in blood serum from broadband dielectric spectra. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2017; 2017:1575-1578. [PMID: 29060182 DOI: 10.1109/embc.2017.8037138] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
This paper presents the results of combining scatter correction and spectral derivation preprocessing methods with frequency-range optimization to improve the accuracy of blood glucose concentration prediction when using a Partial Least Square Regression model. Using broadband dielectric spectroscopy, absorption spectrums in the frequency range of 500 MHz to 50 GHz were gathered from blood serums. Partial Least Square Regression models were trained using data gathered from samples of varying glucose concentrations and temperatures, and the quality of the predictions were evaluated by performing leave-one-out cross validation. Potential improvements in prediction accuracy were assessed by finding the optimal frequency ranges of dielectric absorption spectrums through iteration, in addition to treatments using common preprocessing methods. The most effective combination of preprocessing method and its corresponding characteristic frequency range was determined from validation using several samples. Finally, among all the preprocessing methods and the frequency ranges explored, performing Savitzky-Golay filtering without derivations lowered the average root mean squared error amongst all the samples from 172 mg/dL without preprocessing, to 143 mg/dL. Additionally, by focusing on a specific frequency range, the root mean squared error dropped to 80.2 mg/dL.
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31
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Affiliation(s)
- Kengo Arai
- Department
of Symbiotic Science of Environment and Natural Resources,
The United Graduate School of Agriculture, and ‡Division of Natural Resources and
Eco-materials, Graduate School of Agriculture Science, Tokyo University of Agriculture and Technology, 3-5-8
Saiwai-cho, Fuchu, Tokyo 183-8509, Japan
| | - Toshiyuki Shikata
- Department
of Symbiotic Science of Environment and Natural Resources,
The United Graduate School of Agriculture, and ‡Division of Natural Resources and
Eco-materials, Graduate School of Agriculture Science, Tokyo University of Agriculture and Technology, 3-5-8
Saiwai-cho, Fuchu, Tokyo 183-8509, Japan
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32
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Shiraga K, Ogawa Y, Kondo N. Hydrogen Bond Network of Water around Protein Investigated with Terahertz and Infrared Spectroscopy. Biophys J 2017; 111:2629-2641. [PMID: 28002739 DOI: 10.1016/j.bpj.2016.11.011] [Citation(s) in RCA: 43] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2016] [Revised: 11/14/2016] [Accepted: 11/15/2016] [Indexed: 11/16/2022] Open
Abstract
The dynamical and structural properties of water at protein interfaces were characterized on the basis of the broadband complex dielectric constant (0.25 to 400 THz) of albumin aqueous solutions. Our analysis of the dielectric responses between 0.25 and 12 THz first revealed hydration water with retarded reorientational dynamics extending ∼8.5 Å (corresponding to three to four layers) out from the albumin surface. Second, the number of nonhydrogen-bonded water was decreased in the presence of the albumin solute, indicating protein inhibits the fragmentation of the water hydrogen-bond network. Finally, water molecules at the albumin interface were found to form a distorted hydrogen-bond structure due to topological and energetic disorder of the protein surface. In addition, the intramolecular O-H stretching vibration of water (∼100 THz), which is sensitive to hydrogen-bond environment, pointed to a trend that hydration water has a larger population of strongly hydrogen-bonded water molecules compared with that of bulk water. From these experimental results, we concluded that the "strengthened" water hydrogen bonds at the protein interface dynamically slow down the reorientational motion of water and form the less-defective hydrogen-bond network by inhibiting the fragmentation of water-water hydrogen bonds. Nevertheless, such a strengthened water hydrogen-bond network is composed of heterogeneous hydrogen-bond distances and angles, and thus characterized as structurally "distorted."
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Affiliation(s)
| | - Yuichi Ogawa
- Graduate School of Agriculture, Kyoto University, Kyoto, Japan
| | - Naoshi Kondo
- Graduate School of Agriculture, Kyoto University, Kyoto, Japan
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33
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Rapid analysis of tetracycline hydrochloride solution by attenuated total reflection terahertz time-domain spectroscopy. Food Chem 2017; 224:262-269. [DOI: 10.1016/j.foodchem.2016.12.064] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2015] [Revised: 06/07/2016] [Accepted: 12/20/2016] [Indexed: 11/17/2022]
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34
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Characterization of the hydrogen-bond network of water around sucrose and trehalose: H-O-H bending analysis. Chem Phys Lett 2017. [DOI: 10.1016/j.cplett.2017.04.023] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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35
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Hydrophobicity of carbohydrates and related hydroxy compounds. Carbohydr Res 2017; 446-447:101-112. [PMID: 28554012 DOI: 10.1016/j.carres.2017.04.019] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2017] [Revised: 04/13/2017] [Indexed: 11/21/2022]
Abstract
The hydrophobic interaction of carbohydrates and other hydroxy compounds with a C18-modified silica gel column was measured with pure water as eluent, thereby expanding the range of measurements already published. The interaction is augmented by structure strengthening salts and decreasing temperature. Although the interaction of the solute with the hydrophobic interface is expected to only imperfectly reflect its state in aqueous bulk solution, the retention can be correlated to hydration numbers calculated from molecular mechanics studies given in the literature. No correlation can be established towards published hydration numbers obtained by physical methods (isentropic compressibility, O-17 NMR relaxation, terahertz spectroscopy, and viscosity). The hydrophobicity is discussed with respect to the chemical structure. It increases with the fraction and size of hydrophobic molecular surface regions.
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36
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Yang X, Yang K, Zhao X, Lin Z, Liu Z, Luo S, Zhang Y, Wang Y, Fu W. Terahertz spectroscopy for the isothermal detection of bacterial DNA by magnetic bead-based rolling circle amplification. Analyst 2017; 142:4661-4669. [PMID: 29119154 DOI: 10.1039/c7an01438d] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
A terahertz biosensor based on rolling circle amplification was developed for the isothermal detection of bacterial DNA.
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Affiliation(s)
- Xiang Yang
- Department of Laboratory Medicine
- Southwest Hospital
- Third Military Medical University
- Chongqing 400038
- China
| | - Ke Yang
- Department of Laboratory Medicine
- Southwest Hospital
- Third Military Medical University
- Chongqing 400038
- China
| | - Xiang Zhao
- Department of Laboratory Medicine
- Southwest Hospital
- Third Military Medical University
- Chongqing 400038
- China
| | - Zhongquan Lin
- Department of Laboratory Medicine
- Southwest Hospital
- Third Military Medical University
- Chongqing 400038
- China
| | - Zhiyong Liu
- Department of Laboratory Medicine
- Southwest Hospital
- Third Military Medical University
- Chongqing 400038
- China
| | - Sha Luo
- Department of Laboratory Medicine
- Southwest Hospital
- Third Military Medical University
- Chongqing 400038
- China
| | - Yang Zhang
- Department of Laboratory Medicine
- Southwest Hospital
- Third Military Medical University
- Chongqing 400038
- China
| | - Yunxia Wang
- Department of Laboratory Medicine
- Southwest Hospital
- Third Military Medical University
- Chongqing 400038
- China
| | - Weiling Fu
- Department of Laboratory Medicine
- Southwest Hospital
- Third Military Medical University
- Chongqing 400038
- China
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37
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Wiebenga-Sanford BP, DiVerdi J, Rithner CD, Levinger NE. Nanoconfinement's Dramatic Impact on Proton Exchange between Glucose and Water. J Phys Chem Lett 2016; 7:4597-4601. [PMID: 27779880 DOI: 10.1021/acs.jpclett.6b01651] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Glucose nanoconfined by solubilization in water-containing AOT (sodium bis(2-ethylhexyl) sulfosuccinate) reverse micelles has been investigated using 1H NMR. NMR spectra reveal well-defined signals for the glucose hydroxyl groups that suggest slow chemical exchange between them and the water hydroxyl groups. Using the EXSY (ZZ-exchange) method, the chemical exchange rate from water to glucose hydroxyl groups was measured for glucose in reverse micelles as a function of size (water pool diameter of ∼1-5 nm) at 25 °C. The chemical exchange rates observed in the nanoconfined interior are dramatically slower (5-20 times) than those observed for glucose in bulk aqueous solution at the same concentration as the micelle interior. Exchange rate constants are calculated via a mechanism that accounts for these observations, and implications of these results are presented and discussed.
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Affiliation(s)
| | - Joseph DiVerdi
- Department of Chemistry, Colorado State University , Fort Collins, Colorado 80523-1872, United States
| | - Christopher D Rithner
- Department of Chemistry, Colorado State University , Fort Collins, Colorado 80523-1872, United States
| | - Nancy E Levinger
- Department of Chemistry, Colorado State University , Fort Collins, Colorado 80523-1872, United States
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38
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Comez L, Paolantoni M, Sassi P, Corezzi S, Morresi A, Fioretto D. Molecular properties of aqueous solutions: a focus on the collective dynamics of hydration water. SOFT MATTER 2016; 12:5501-5514. [PMID: 27280176 DOI: 10.1039/c5sm03119b] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
When a solute is dissolved in water, their mutual interactions determine the molecular properties of the solute on one hand, and the structure and dynamics of the surrounding water particles (the so-called hydration water) on the other. The very existence of soft matter and its peculiar properties are largely due to the wide variety of possible water-solute interactions. In this context, water is not an inert medium but rather an active component, and hydration water plays a crucial role in determining the structure, stability, dynamics, and function of matter. This review focuses on the collective dynamics of hydration water in terms of retardation with respect to the bulk, and of the number of molecules whose dynamics is perturbed. Since water environments are in a dynamic equilibrium, with molecules continuously exchanging from around the solute towards the bulk and vice versa, we examine the ability of different techniques to measure the water dynamics on the basis of the explored time scales and exchange rates. Special emphasis is given to the collective dynamics probed by extended depolarized light scattering and we discuss whether and to what extent the results obtained in aqueous solutions of small molecules can be extrapolated to the case of large biomacromolecules. In fact, recent experiments performed on solutions of increasing complexity clearly indicate that a reductionist approach is not adequate to describe their collective dynamics. We conclude this review by presenting current ideas that are being developed to describe the dynamics of water interacting with macromolecules.
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Affiliation(s)
- L Comez
- IOM-CNR c/o Dipartimento di Fisica e Geologia, Università di Perugia, Via Pascoli, I-06123 Perugia, Italy
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39
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Cui X, Cai W, Shao X. Glucose induced variation of water structure from temperature dependent near infrared spectra. RSC Adv 2016. [DOI: 10.1039/c6ra18912a] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The different effects of glucose on water species provide evidence to explain the bioprotective function of carbohydrates in aqueous solutions.
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Affiliation(s)
- Xiaoyu Cui
- Research Center for Analytical Sciences
- College of Chemistry
- Nankai University
- Tianjin 300071
- P. R. China
| | - Wensheng Cai
- Research Center for Analytical Sciences
- College of Chemistry
- Nankai University
- Tianjin 300071
- P. R. China
| | - Xueguang Shao
- Research Center for Analytical Sciences
- College of Chemistry
- Nankai University
- Tianjin 300071
- P. R. China
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