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For: Agrawal V, Peralta P, Li Y, Oswald J. A pressure-transferable coarse-grained potential for modeling the shock Hugoniot of polyethylene. J Chem Phys 2016;145:104903. [DOI: 10.1063/1.4962255] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
Number Cited by Other Article(s)
1
Wang CI, Maier JC, Jackson NE. Accessing the electronic structure of liquid crystalline semiconductors with bottom-up electronic coarse-graining. Chem Sci 2024;15:8390-8403. [PMID: 38846409 PMCID: PMC11151863 DOI: 10.1039/d3sc06749a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Accepted: 05/01/2024] [Indexed: 06/09/2024]  Open
2
Noid WG, Szukalo RJ, Kidder KM, Lesniewski MC. Rigorous Progress in Coarse-Graining. Annu Rev Phys Chem 2024;75:21-45. [PMID: 38941523 DOI: 10.1146/annurev-physchem-062123-010821] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/30/2024]
3
Lesniewski MC, Noid WG. Insight into the Density-Dependence of Pair Potentials for Predictive Coarse-Grained Models. J Phys Chem B 2024;128:1298-1316. [PMID: 38271676 DOI: 10.1021/acs.jpcb.3c06890] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2024]
4
Eghlidos O, Oswald J. Derived Coarse-Grained Potentials for Semicrystalline Polymers with a Blended Multistate Iterative Boltzmann Inversion Method. J Chem Theory Comput 2023;19:9445-9456. [PMID: 38083860 DOI: 10.1021/acs.jctc.3c00935] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2023]
5
O'Connor JPD, Cook JL, Stott IP, Masters AJ, Avendaño C. Local density dependent potentials for an underlying van der Waals equation of state: A simulation and density functional theory analysis. J Chem Phys 2023;159:194109. [PMID: 37982487 DOI: 10.1063/5.0171331] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Accepted: 10/24/2023] [Indexed: 11/21/2023]  Open
6
Jin J, Hwang J, Voth GA. Gaussian representation of coarse-grained interactions of liquids: Theory, parametrization, and transferability. J Chem Phys 2023;159:184105. [PMID: 37942867 DOI: 10.1063/5.0160567] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Accepted: 10/06/2023] [Indexed: 11/10/2023]  Open
7
Mikhail JP, Rutledge GC. Mechanisms of Shock Dissipation in Semicrystalline Polyethylene. Polymers (Basel) 2023;15:4262. [PMID: 37959945 PMCID: PMC10650820 DOI: 10.3390/polym15214262] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2023] [Revised: 10/24/2023] [Accepted: 10/26/2023] [Indexed: 11/15/2023]  Open
8
Tang J, Kobayashi T, Zhang H, Fukuzawa K, Itoh S. Enhancing pressure consistency and transferability of structure-based coarse-graining. Phys Chem Chem Phys 2023;25:2256-2264. [PMID: 36594875 DOI: 10.1039/d2cp04849c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
9
Simulating Polymerization by Boltzmann Inversion Force Field Approach and Dynamical Nonequilibrium Reactive Molecular Dynamics. Polymers (Basel) 2022;14:polym14214529. [DOI: 10.3390/polym14214529] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Revised: 10/19/2022] [Accepted: 10/21/2022] [Indexed: 11/16/2022]  Open
10
Jin J, Pak AJ, Durumeric AEP, Loose TD, Voth GA. Bottom-up Coarse-Graining: Principles and Perspectives. J Chem Theory Comput 2022;18:5759-5791. [PMID: 36070494 PMCID: PMC9558379 DOI: 10.1021/acs.jctc.2c00643] [Citation(s) in RCA: 80] [Impact Index Per Article: 40.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2022] [Indexed: 01/14/2023]
11
DeLyser MR, Noid WG. Coarse-grained models for local density gradients. J Chem Phys 2022;156:034106. [DOI: 10.1063/5.0075291] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]  Open
12
Man VH, Li MS, Derreumaux P, Wang J, Nguyen TT, Nangia S, Nguyen PH. Molecular mechanism of ultrasound interaction with a blood brain barrier model. J Chem Phys 2021;153:045104. [PMID: 32752695 DOI: 10.1063/5.0010667] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]  Open
13
Effectiveness of coarse graining degree and speedup on the dynamic properties of homopolymer. J Mol Model 2021;27:55. [PMID: 33511476 DOI: 10.1007/s00894-020-04661-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2020] [Accepted: 12/20/2020] [Indexed: 10/22/2022]
14
Stevenson CS, Curro JG, McCoy JD. Gruneisen parameters of bead-spring chains: MD simulation and theory. J Chem Phys 2020;153:244903. [PMID: 33380084 DOI: 10.1063/5.0035451] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
15
DeLyser M, Noid WG. Bottom-up coarse-grained models for external fields and interfaces. J Chem Phys 2020;153:224103. [PMID: 33317310 DOI: 10.1063/5.0030103] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]  Open
16
Jin J, Yu A, Voth GA. Temperature and Phase Transferable Bottom-up Coarse-Grained Models. J Chem Theory Comput 2020;16:6823-6842. [PMID: 32975948 DOI: 10.1021/acs.jctc.0c00832] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
17
Material Point Method Simulation of the Equation of State of Polymer-Bonded Explosive under Impact Loading at Mesoscale. Processes (Basel) 2020. [DOI: 10.3390/pr8080983] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]  Open
18
Shahidi N, Chazirakis A, Harmandaris V, Doxastakis M. Coarse-graining of polyisoprene melts using inverse Monte Carlo and local density potentials. J Chem Phys 2020;152:124902. [PMID: 32241142 DOI: 10.1063/1.5143245] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
19
DeLyser MR, Noid WG. Analysis of local density potentials. J Chem Phys 2019;151:224106. [PMID: 31837690 DOI: 10.1063/1.5128665] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
20
Man VH, Li MS, Wang J, Derreumaux P, Nguyen PH. Interaction mechanism between the focused ultrasound and lipid membrane at the molecular level. J Chem Phys 2019;150:215101. [PMID: 31176320 PMCID: PMC7043851 DOI: 10.1063/1.5099008] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2019] [Accepted: 05/13/2019] [Indexed: 12/15/2022]  Open
21
Li Y, Agrawal V, Oswald J. Systematic coarse‐graining of semicrystalline polyethylene. ACTA ACUST UNITED AC 2019. [DOI: 10.1002/polb.24789] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
22
Sliozberg YR, Yeh IC, Kröger M, Masser KA, Lenhart JL, Andzelm JW. Ordering and Crystallization of Entangled Polyethylene Melts under Uniaxial Tension: A Molecular Dynamics Study. Macromolecules 2018. [DOI: 10.1021/acs.macromol.8b01538] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
23
Wagner JW, Dannenhoffer-Lafage T, Jin J, Voth GA. Extending the range and physical accuracy of coarse-grained models: Order parameter dependent interactions. J Chem Phys 2018;147:044113. [PMID: 28764380 DOI: 10.1063/1.4995946] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]  Open
24
Min SH, Berkowitz ML. A comparative computational study of coarse-grained and all-atom water models in shock Hugoniot states. J Chem Phys 2018;148:144504. [DOI: 10.1063/1.5011968] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
25
Sanyal T, Shell MS. Transferable Coarse-Grained Models of Liquid-Liquid Equilibrium Using Local Density Potentials Optimized with the Relative Entropy. J Phys Chem B 2018;122:5678-5693. [PMID: 29466859 DOI: 10.1021/acs.jpcb.7b12446] [Citation(s) in RCA: 53] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
26
Lafond PG, Izvekov S. Multiscale Coarse-Graining with Effective Polarizabilities: A Fully Bottom-Up Approach. J Chem Theory Comput 2018;14:1873-1886. [DOI: 10.1021/acs.jctc.7b00917] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
27
DeLyser MR, Noid WG. Extending pressure-matching to inhomogeneous systems via local-density potentials. J Chem Phys 2017;147:134111. [DOI: 10.1063/1.4999633] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
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