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Wang J, Gu C, Xu Y, Zou W. Discontinuous phase transition switching induced by a power-law function between dynamical parameters in coupled oscillators. CHAOS (WOODBURY, N.Y.) 2024; 34:023106. [PMID: 38341760 DOI: 10.1063/5.0189672] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Accepted: 01/09/2024] [Indexed: 02/13/2024]
Abstract
In biological or physical systems, the intrinsic properties of oscillators are heterogeneous and correlated. These two characteristics have been empirically validated and have garnered attention in theoretical studies. In this paper, we propose a power-law function existed between the dynamical parameters of the coupled oscillators, which can control discontinuous phase transition switching. Unlike the special designs for the coupling terms, this generalized function within the dynamical term reveals another path for generating the first-order phase transitions. The power-law relationship between dynamic characteristics is reasonable, as observed in empirical studies, such as long-term tremor activity during volcanic eruptions and ion channel characteristics of the Xenopus expression system. Our work expands the conditions that used to be strict for the occurrence of the first-order phase transitions and deepens our understanding of the impact of correlation between intrinsic parameters on phase transitions. We explain the reason why the continuous phase transition switches to the discontinuous phase transition when the control parameter is at a critical value.
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Affiliation(s)
- Jiangsheng Wang
- Department of Systems Science, Business School, University of Shanghai for Science and Technology, Shanghai 200093, China
| | - Changgui Gu
- Department of Systems Science, Business School, University of Shanghai for Science and Technology, Shanghai 200093, China
| | - Yan Xu
- Department of Systems Science, Business School, University of Shanghai for Science and Technology, Shanghai 200093, China
| | - Wei Zou
- School of Mathematical Sciences, South China Normal University, Guangzhou 510631, China
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van Beurden AW, Meylahn JM, Achterhof S, Buijink R, Olde Engberink A, Michel S, Meijer JH, Rohling JHT. Reduced Plasticity in Coupling Strength in the Aging SCN Clock as Revealed by Kuramoto Modeling. J Biol Rhythms 2023; 38:461-475. [PMID: 37329153 PMCID: PMC10475211 DOI: 10.1177/07487304231175191] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
The mammalian circadian clock is located in the suprachiasmatic nucleus (SCN) and consists of a network of coupled neurons, which are entrained to the environmental light-dark cycle. The phase coherence of the neurons is plastic and driven by the duration of daylight. With aging, the capacity to behaviorally adapt to seasonal changes in photoperiod reduces. The mechanisms underlying photoperiodic adaptation are largely unknown, but are important to unravel for the development of novel interventions to improve the quality of life of the elderly. We analyzed the phase coherence of single-cell PERIOD2::LUCIFERASE (PER2::LUC) expression rhythms in the SCN of young and old mice entrained to either long or short photoperiod. The phase coherence was used as input to a 2-community noisy Kuramoto model to estimate the coupling strength between and within neuronal subpopulations. The model revealed a correlation between coupling strength and photoperiod-induced changes in the phase relationship among neurons, suggesting a functional link. We found that the SCN of young mice adapts in coupling strength over a large range, with weak coupling in long photoperiod (LP) and strong coupling in short photoperiod (SP). In aged mice, we also found weak coupling in LP, but a reduced capacity to reach strong coupling in SP. The inability to respond with an increase in coupling strength suggests that manipulation of photoperiod is not a suitable strategy to enhance clock function with aging. We conclude that the inability of aged mice to reach strong coupling contributes to deficits in behavioral adaptation to seasonal changes in photoperiod.
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Affiliation(s)
- Anouk W. van Beurden
- Department of Cell and Chemical Biology, Leiden University Medical Center, Leiden, The Netherlands
| | - Janusz M. Meylahn
- Dutch Institute for Emergent Phenomena, University of Amsterdam, Amsterdam, The Netherlands
- Department of Applied Mathematics, University of Twente, Enschede, The Netherlands
| | - Stefan Achterhof
- Mathematical Institute, Leiden University, Leiden, The Netherlands
| | - Renate Buijink
- Department of Cell and Chemical Biology, Leiden University Medical Center, Leiden, The Netherlands
| | - Anneke Olde Engberink
- Department of Cell and Chemical Biology, Leiden University Medical Center, Leiden, The Netherlands
| | - Stephan Michel
- Department of Cell and Chemical Biology, Leiden University Medical Center, Leiden, The Netherlands
| | - Johanna H. Meijer
- Department of Cell and Chemical Biology, Leiden University Medical Center, Leiden, The Netherlands
| | - Jos H. T. Rohling
- Department of Cell and Chemical Biology, Leiden University Medical Center, Leiden, The Netherlands
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Gu C, Li J, Zhou J, Yang H, Rohling J. Network Structure of the Master Clock Is Important for Its Primary Function. Front Physiol 2021; 12:678391. [PMID: 34483953 PMCID: PMC8415478 DOI: 10.3389/fphys.2021.678391] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2021] [Accepted: 07/22/2021] [Indexed: 11/13/2022] Open
Abstract
A master clock located in the suprachiasmatic nucleus (SCN) regulates the circadian rhythm of physiological and behavioral activities in mammals. The SCN has two main functions in the regulation: an endogenous clock produces the endogenous rhythmic signal in body rhythms, and a calibrator synchronizes the body rhythms to the external light-dark cycle. These two functions have been determined to depend on either the dynamic behaviors of individual neurons or the whole SCN neuronal network. In this review, we first introduce possible network structures for the SCN, as revealed by time series analysis from real experimental data. It was found that the SCN network is heterogeneous and sparse, that is, the average shortest path length is very short, some nodes are hubs with large node degrees but most nodes have small node degrees, and the average node degree of the network is small. Secondly, the effects of the SCN network structure on the SCN function are reviewed based on mathematical models of the SCN network. It was found that robust rhythms with large amplitudes, a high synchronization between SCN neurons and a large entrainment ability exists mainly in small-world and scale-free type networks, but not other types. We conclude that the SCN most probably is an efficient small-world type or scale-free type network, which drives SCN function.
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Affiliation(s)
- Changgui Gu
- Business School, University of Shanghai for Science and Technology, Shanghai, China
| | - Jiahui Li
- Business School, University of Shanghai for Science and Technology, Shanghai, China
| | - Jian Zhou
- Business School, University of Shanghai for Science and Technology, Shanghai, China
| | - Huijie Yang
- Business School, University of Shanghai for Science and Technology, Shanghai, China
| | - Jos Rohling
- Laboratory for Neurophysiology, Department of Cell and Chemical Biology, Leiden University Medical Center, Leiden, Netherlands
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Abstract
The suprachiasmatic nucleus (SCN) of the hypothalamus is remarkable. Despite numbering only about 10,000 neurons on each side of the third ventricle, the SCN is our principal circadian clock, directing the daily cycles of behaviour and physiology that set the tempo of our lives. When this nucleus is isolated in organotypic culture, its autonomous timing mechanism can persist indefinitely, with precision and robustness. The discovery of the cell-autonomous transcriptional and post-translational feedback loops that drive circadian activity in the SCN provided a powerful exemplar of the genetic specification of complex mammalian behaviours. However, the analysis of circadian time-keeping is moving beyond single cells. Technical and conceptual advances, including intersectional genetics, multidimensional imaging and network theory, are beginning to uncover the circuit-level mechanisms and emergent properties that make the SCN a uniquely precise and robust clock. However, much remains unknown about the SCN, not least the intrinsic properties of SCN neurons, its circuit topology and the neuronal computations that these circuits support. Moreover, the convention that the SCN is a neuronal clock has been overturned by the discovery that astrocytes are an integral part of the timepiece. As a test bed for examining the relationships between genes, cells and circuits in sculpting complex behaviours, the SCN continues to offer powerful lessons and opportunities for contemporary neuroscience.
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Gu C, Yang H, Meijer JH, Rohling JHT. Dependence of the entrainment on the ratio of amplitudes between two subgroups in the suprachiasmatic nucleus. Phys Rev E 2018; 97:062215. [PMID: 30011551 DOI: 10.1103/physreve.97.062215] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2018] [Indexed: 06/08/2023]
Abstract
Organisms can be synchronized not only to the natural 24-h light-dark cycle but also to artificial non-24-h cycles. Interestingly, when the period of the cycle is far from 24 h, organisms may show complicated behavioral patterns. For example, exposed to a 22-h light-dark cycle, in behavioral activity of rats, a phenomenon called "dissociation" emerges, i.e., one periodic component shows a 22-h period and the other shows a period close to the endogenous period of the animal (around 24 h). It has been found that these two components are regulated by two subgroups of the suprachiasmatic nucleus (SCN), respectively, with the ventrolateral part regulating the 22-h component and the dorsomedial part regulating the other component. In the present study, based on a mathematical model, we will examine how the ratio of amplitudes between these two subgroups affects the entrainment of the SCN to the external 22-h light-dark cycle. Our results show that the dissociation happens when the ratio is smaller than 1 and the maximal entrainment (synchronization) ability of the SCN to the external cycle is obtained when the ratio is larger than 1. Our finding sheds light on the dissociation between the subgroups and suggests that the heterogeneity in the amplitudes alter the entrainment ability of the SCN.
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Affiliation(s)
- Changgui Gu
- Business School, University of Shanghai for Science and Technology, Shanghai 200093, People's Republic of China
- Department of Molecular Cell Biology, Laboratory for Neurophysiology, Leiden University Medical Center, Leiden 2300RC, The Netherlands
| | - Huijie Yang
- Business School, University of Shanghai for Science and Technology, Shanghai 200093, People's Republic of China
| | - Johanna H Meijer
- Department of Molecular Cell Biology, Laboratory for Neurophysiology, Leiden University Medical Center, Leiden 2300RC, The Netherlands
| | - Jos H T Rohling
- Department of Molecular Cell Biology, Laboratory for Neurophysiology, Leiden University Medical Center, Leiden 2300RC, The Netherlands
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Weng T, Zhang J, Small M, Harandizadeh B, Hui P. Universal principles governing multiple random searchers on complex networks: The logarithmic growth pattern and the harmonic law. Phys Rev E 2018; 97:032320. [PMID: 29776160 DOI: 10.1103/physreve.97.032320] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2017] [Indexed: 11/07/2022]
Abstract
We propose a unified framework to evaluate and quantify the search time of multiple random searchers traversing independently and concurrently on complex networks. We find that the intriguing behaviors of multiple random searchers are governed by two basic principles-the logarithmic growth pattern and the harmonic law. Specifically, the logarithmic growth pattern characterizes how the search time increases with the number of targets, while the harmonic law explores how the search time of multiple random searchers varies relative to that needed by individual searchers. Numerical and theoretical results demonstrate these two universal principles established across a broad range of random search processes, including generic random walks, maximal entropy random walks, intermittent strategies, and persistent random walks. Our results reveal two fundamental principles governing the search time of multiple random searchers, which are expected to facilitate investigation of diverse dynamical processes like synchronization and spreading.
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Affiliation(s)
- Tongfeng Weng
- Business School, University of Shanghai for Science and Technology, Shanghai 200093, China.,HKUST-DT System and Media Laboratory, Hong Kong University of Science and Technology, Hong Kong
| | - Jie Zhang
- Centre for Computational Systems Biology, Fudan University, China
| | - Michael Small
- The University of Western Australia, Crawley, Western Australia 6009, Australia.,Mineral Resources, CSIRO, Kensington, Western Australia, Australia
| | - Bahareh Harandizadeh
- HKUST-DT System and Media Laboratory, Hong Kong University of Science and Technology, Hong Kong
| | - Pan Hui
- HKUST-DT System and Media Laboratory, Hong Kong University of Science and Technology, Hong Kong
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