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For: Koner D, Bemish RJ, Meuwly M. The C(3P) + NO(X2Π) O(3P) + CN(X2Σ+), N(2D)/N(4S) + CO(X1Σ+) reaction: Rates, branching ratios, and final states from 15 K to 20 000 K. J Chem Phys 2018;149:094305. [PMID: 30195287 DOI: 10.1063/1.5046906] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
Number Cited by Other Article(s)
1
Hwang W, Austin SL, Blondel A, Boittier ED, Boresch S, Buck M, Buckner J, Caflisch A, Chang HT, Cheng X, Choi YK, Chu JW, Crowley MF, Cui Q, Damjanovic A, Deng Y, Devereux M, Ding X, Feig MF, Gao J, Glowacki DR, Gonzales JE, Hamaneh MB, Harder ED, Hayes RL, Huang J, Huang Y, Hudson PS, Im W, Islam SM, Jiang W, Jones MR, Käser S, Kearns FL, Kern NR, Klauda JB, Lazaridis T, Lee J, Lemkul JA, Liu X, Luo Y, MacKerell AD, Major DT, Meuwly M, Nam K, Nilsson L, Ovchinnikov V, Paci E, Park S, Pastor RW, Pittman AR, Post CB, Prasad S, Pu J, Qi Y, Rathinavelan T, Roe DR, Roux B, Rowley CN, Shen J, Simmonett AC, Sodt AJ, Töpfer K, Upadhyay M, van der Vaart A, Vazquez-Salazar LI, Venable RM, Warrensford LC, Woodcock HL, Wu Y, Brooks CL, Brooks BR, Karplus M. CHARMM at 45: Enhancements in Accessibility, Functionality, and Speed. J Phys Chem B 2024;128:9976-10042. [PMID: 39303207 PMCID: PMC11492285 DOI: 10.1021/acs.jpcb.4c04100] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2024] [Revised: 08/15/2024] [Accepted: 08/22/2024] [Indexed: 09/22/2024]
2
Wang J, San Vicente Veliz JC, Meuwly M. High-Energy Reaction Dynamics of N3. J Phys Chem A 2024;128:8322-8332. [PMID: 39052035 DOI: 10.1021/acs.jpca.4c02841] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/27/2024]
3
Alves MO, Mota VC, Braga JP, Varandas AJC, Guo H, Galvão BRL. High-accuracy DMBE potential energy surface for CNO(A''4) and the rate coefficients for the C + NO reaction in the A'2, A''2, and A''4 states. J Chem Phys 2023;159:214307. [PMID: 38054514 DOI: 10.1063/5.0180918] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Accepted: 11/13/2023] [Indexed: 12/07/2023]  Open
4
Montes de Oca-Estévez MJ, Darna B, García-Ruiz B, Prosmiti R, González-Lezana T, Koner D. Ar+ ArH+ Reactive Collisions of Astrophysical Interest: The Case of 36 Ar. Chemphyschem 2023;24:e202300450. [PMID: 37477047 DOI: 10.1002/cphc.202300450] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2023] [Revised: 07/19/2023] [Accepted: 07/20/2023] [Indexed: 07/22/2023]
5
Van Benschoten W, Petras HR, Shepherd JJ. Electronic Free Energy Surface of the Nitrogen Dimer Using First-Principles Finite Temperature Electronic Structure Methods. J Phys Chem A 2023;127:6842-6856. [PMID: 37535315 PMCID: PMC10440793 DOI: 10.1021/acs.jpca.3c01741] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Revised: 07/20/2023] [Indexed: 08/04/2023]
6
Käser S, Vazquez-Salazar LI, Meuwly M, Töpfer K. Neural network potentials for chemistry: concepts, applications and prospects. DIGITAL DISCOVERY 2023;2:28-58. [PMID: 36798879 PMCID: PMC9923808 DOI: 10.1039/d2dd00102k] [Citation(s) in RCA: 17] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Accepted: 12/20/2022] [Indexed: 12/24/2022]
7
Goswami S, San Vicente Veliz JC, Upadhyay M, Bemish RJ, Meuwly M. Quantum and quasi-classical dynamics of the C(3P) + O2(3Σ-g) → CO(1Σ+) + O(1D) reaction on its electronic ground state. Phys Chem Chem Phys 2022;24:23309-23322. [PMID: 36165004 PMCID: PMC9533374 DOI: 10.1039/d2cp02840a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
8
Töpfer K, Upadhyay M, Meuwly M. Quantitative molecular simulations. Phys Chem Chem Phys 2022;24:12767-12786. [PMID: 35593769 PMCID: PMC9158373 DOI: 10.1039/d2cp01211a] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2022] [Accepted: 04/30/2022] [Indexed: 11/21/2022]
9
Patra S, San Vicente Veliz JC, Koner D, Bieske EJ, Meuwly M. Photodissociation dynamics of N3+. J Chem Phys 2022;156:124307. [DOI: 10.1063/5.0085081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
10
Meuwly M. Atomistic Simulations for Reactions and Vibrational Spectroscopy in the Era of Machine Learning─Quo Vadis?. J Phys Chem B 2022;126:2155-2167. [PMID: 35286087 DOI: 10.1021/acs.jpcb.2c00212] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
11
Arnold J, San Vicente Veliz JC, Koner D, Singh N, Bemish RJ, Meuwly M. Machine learning product state distributions from initial reactant states for a reactive atom–diatom collision system. J Chem Phys 2022;156:034301. [DOI: 10.1063/5.0078008] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
12
Upadhyay M, Pezzella M, Meuwly M. Genesis of Polyatomic Molecules in Dark Clouds: CO2 Formation on Cold Amorphous Solid Water. J Phys Chem Lett 2021;12:6781-6787. [PMID: 34270244 DOI: 10.1021/acs.jpclett.1c01810] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
13
Koner D, Barrios L, González-Lezana T, Panda AN. Atom-Diatom Reactive Scattering Collisions in Protonated Rare Gas Systems. Molecules 2021;26:4206. [PMID: 34299481 PMCID: PMC8304066 DOI: 10.3390/molecules26144206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Revised: 07/07/2021] [Accepted: 07/08/2021] [Indexed: 11/17/2022]  Open
14
Korutla S, Koner D, Varandas AJC, Tammineni RR. Quantum and Classical Dynamics of the N(2D) + N2 Reaction on Its Ground Doublet State N3(12A″) Potential Energy Surface. J Phys Chem A 2021;125:5650-5660. [PMID: 34155884 DOI: 10.1021/acs.jpca.1c03198] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
15
Meuwly M. Machine Learning for Chemical Reactions. Chem Rev 2021;121:10218-10239. [PMID: 34097378 DOI: 10.1021/acs.chemrev.1c00033] [Citation(s) in RCA: 131] [Impact Index Per Article: 43.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
16
San Vicente Veliz JC, Koner D, Schwilk M, Bemish RJ, Meuwly M. The C(3P) + O2(3Σg-) → CO2 ↔ CO(1Σ+) + O(1D)/O(3P) reaction: thermal and vibrational relaxation rates from 15 K to 20 000 K. Phys Chem Chem Phys 2021;23:11251-11263. [PMID: 33949507 PMCID: PMC8133592 DOI: 10.1039/d1cp01101d] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2021] [Accepted: 04/10/2021] [Indexed: 11/24/2022]
17
Koner D. Quantum and quasiclassical dynamical simulations for the Ar2H+ on a new global analytical potential energy surface. J Chem Phys 2021;154:054303. [PMID: 33557552 DOI: 10.1063/5.0039252] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]  Open
18
Alves MO, Gonçalves CEM, Braga JP, Mota VC, Varandas AJC, Galvão BRL. Accurate DMBE potential-energy surface for CNO(2A″) and rate coefficients in C(3P)+NO collisions. J Chem Phys 2021;154:034303. [PMID: 33499610 DOI: 10.1063/5.0031199] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
19
Complex reaction processes in combustion unraveled by neural network-based molecular dynamics simulation. Nat Commun 2020;11:5713. [PMID: 33177517 PMCID: PMC7658983 DOI: 10.1038/s41467-020-19497-z] [Citation(s) in RCA: 70] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2020] [Accepted: 10/06/2020] [Indexed: 12/21/2022]  Open
20
Käser S, Koner D, Christensen AS, von Lilienfeld OA, Meuwly M. Machine Learning Models of Vibrating H2CO: Comparing Reproducing Kernels, FCHL, and PhysNet. J Phys Chem A 2020;124:8853-8865. [DOI: 10.1021/acs.jpca.0c05979] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
21
Koner D, Meuwly M. Permutationally Invariant, Reproducing Kernel-Based Potential Energy Surfaces for Polyatomic Molecules: From Formaldehyde to Acetone. J Chem Theory Comput 2020;16:5474-5484. [DOI: 10.1021/acs.jctc.0c00535] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
22
Koner D, Schwilk M, Patra S, Bieske EJ, Meuwly M. N3+: Full-dimensional ground state potential energy surface, vibrational energy levels, and dynamics. J Chem Phys 2020;153:044302. [DOI: 10.1063/5.0011957] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
23
Arnold J, Koner D, Käser S, Singh N, Bemish RJ, Meuwly M. Machine Learning for Observables: Reactant to Product State Distributions for Atom–Diatom Collisions. J Phys Chem A 2020;124:7177-7190. [DOI: 10.1021/acs.jpca.0c05173] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
24
Koner D, Salehi SM, Mondal P, Meuwly M. Non-conventional force fields for applications in spectroscopy and chemical reaction dynamics. J Chem Phys 2020;153:010901. [DOI: 10.1063/5.0009628] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]  Open
25
Koner D, Bemish RJ, Meuwly M. Dynamics on Multiple Potential Energy Surfaces: Quantitative Studies of Elementary Processes Relevant to Hypersonics. J Phys Chem A 2020;124:6255-6269. [DOI: 10.1021/acs.jpca.0c01870] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
26
Venturi S, Jaffe RL, Panesi M. Bayesian Machine Learning Approach to the Quantification of Uncertainties on Ab Initio Potential Energy Surfaces. J Phys Chem A 2020;124:5129-5146. [DOI: 10.1021/acs.jpca.0c02395] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
27
Unke OT, Koner D, Patra S, Käser S, Meuwly M. High-dimensional potential energy surfaces for molecular simulations: from empiricism to machine learning. MACHINE LEARNING-SCIENCE AND TECHNOLOGY 2020. [DOI: 10.1088/2632-2153/ab5922] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
28
San Vicente Veliz JC, Koner D, Schwilk M, Bemish RJ, Meuwly M. The N(4S) + O2(X3Σ−g) ↔ O(3P) + NO(X2Π) reaction: thermal and vibrational relaxation rates for the 2A′, 4A′ and 2A′′ states. Phys Chem Chem Phys 2020;22:3927-3939. [DOI: 10.1039/c9cp06085e] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
29
Koner D, San Vicente Veliz JC, Bemish RJ, Meuwly M. Accurate reproducing kernel-based potential energy surfaces for the triplet ground states of N2O and dynamics for the N + NO ↔ O + N2 and N2 + O → 2N + O reactions. Phys Chem Chem Phys 2020;22:18488-18498. [DOI: 10.1039/d0cp02509g] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
30
Sweeny BC, Pan H, Kassem A, Sawyer JC, Ard SG, Shuman NS, Viggiano AA, Brickel S, Unke OT, Upadhyay M, Meuwly M. Thermal activation of methane by MgO+: temperature dependent kinetics, reactive molecular dynamics simulations and statistical modeling. Phys Chem Chem Phys 2020;22:8913-8923. [DOI: 10.1039/d0cp00668h] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
31
Dörfler AD, Eberle P, Koner D, Tomza M, Meuwly M, Willitsch S. Long-range versus short-range effects in cold molecular ion-neutral collisions. Nat Commun 2019;10:5429. [PMID: 31780657 PMCID: PMC6882903 DOI: 10.1038/s41467-019-13218-x] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2019] [Accepted: 10/28/2019] [Indexed: 12/27/2022]  Open
32
Rivero U, Unke OT, Meuwly M, Willitsch S. Reactive atomistic simulations of Diels-Alder reactions: The importance of molecular rotations. J Chem Phys 2019;151:104301. [DOI: 10.1063/1.5114981] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
33
Alves MV, Gonçalves CEM, Braga JP, Mota VC, Varandas AJC, Galvão BRL. Quasiclassical Study of the C(3P) + NO(X2Π) and O(3P) + CN(X2Σ+) Collisional Processes on an Accurate DMBE Potential Energy Surface. J Phys Chem A 2019;123:7195-7200. [PMID: 31356075 DOI: 10.1021/acs.jpca.9b03860] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
34
Kroupnov A, Pogosbekian M. Detailed mechanism of exchange reactions CO + N, CN + O and NO + C on the 4A″ potential energy surface at high temperature. Chem Phys 2019. [DOI: 10.1016/j.chemphys.2019.04.026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
35
Koner D, Unke OT, Boe K, Bemish RJ, Meuwly M. Exhaustive state-to-state cross sections for reactive molecular collisions from importance sampling simulation and a neural network representation. J Chem Phys 2019;150:211101. [DOI: 10.1063/1.5097385] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
36
Pezzella M, Meuwly M. O2 formation in cold environments. Phys Chem Chem Phys 2019;21:6247-6255. [PMID: 30834902 DOI: 10.1039/c8cp07474g] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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