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Ye BB, Chen S, Wang ZG. GCMe: Efficient Implementation of the Gaussian Core Model with Smeared Electrostatic Interactions for Molecular Dynamics Simulations of Soft Matter Systems. J Chem Theory Comput 2024. [PMID: 39013595 DOI: 10.1021/acs.jctc.4c00603] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/18/2024]
Abstract
In recent years, molecular dynamics (MD) simulations have emerged as an essential tool for understanding the structure, dynamics, and phase behavior of charged soft matter systems. To explore phenomena across greater length and time scales in MD simulations, molecules are often coarse-grained for better computational performance. However, commonly used force fields represent particles as hard-core interaction centers with point charges, which often overemphasizes the packing effect and short-range electrostatics, especially in systems with bulky deformable organic molecules and systems with strong coarse-graining. This underscores the need for an efficient soft-core model to physically capture the effective interactions between coarse-grained particles. To this end, we implement a soft-core model uniting the Gaussian core model with smeared electrostatic interactions that is phenomenologically equivalent to recent theoretical models. We first parametrize it generically using water as the model solvent. Then, we benchmark its performance in the OpenMM toolkit for different boundary conditions to highlight a computational speedup of up to 34 × compared to commonly used force fields and existing implementations. Finally, we demonstrate its utility by investigating how boundary polarizability affects the adsorption behavior of a polyelectrolyte solution on perfectly conducting and nonmetal boundaries.
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Affiliation(s)
- Benjamin Bobin Ye
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States
| | - Shensheng Chen
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States
| | - Zhen-Gang Wang
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States
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2
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Zhou S. On Capacitance and Energy Storage of Supercapacitor with Dielectric Constant Discontinuity. NANOMATERIALS 2022; 12:nano12152534. [PMID: 35893502 PMCID: PMC9330726 DOI: 10.3390/nano12152534] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Revised: 07/15/2022] [Accepted: 07/22/2022] [Indexed: 12/04/2022]
Abstract
The classical density functional theory (CDFT) is applied to investigate influences of electrode dielectric constant on specific differential capacitance Cd and specific energy storage E of a cylindrical electrode pore electrical double layer. Throughout all calculations the electrode dielectric constant varies from 5, corresponding to a dielectric electrode, to εwr= 108 corresponding to a metal electrode. Main findings are summarized as below. (i): By using a far smaller value of the solution relative dielectric constant εr=10, which matches with the reality of extremely narrow tube, one discloses that a rather high saturation voltage is needed to attain the saturation energy storage in the ultra-small pore. (ii): Use of a realistic low εr=10 value brings two obvious effects. First, influence of bulk electrolyte concentration on the Cd is rather small except when the electrode potential is around the zero charge potential; influence on the E curve is almost unobservable. Second, there remain the Cd and E enhancing effects caused by counter-ion valency rise, but strength of the effects reduces greatly with dropping of the εr value; in contrast, the Cd and E reducing effects coming from the counter-ion size enhancing remain significant enough for the low εr value. (iii) A large value of electrode relative dielectric constant εrw always reduces both the capacitance and energy storage; moreover, the effect of the εrw value gets eventually unobservable for small enough pore when the εrw value is beyond the scope corresponding to dielectric electrode. It is analyzed that the above effects take their rise in the repulsion and attraction on the counter-ions and co-ions caused by the electrode bound charges and a strengthened inter-counter-ion electrostatic repulsion originated in the low εr value.
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Affiliation(s)
- Shiqi Zhou
- School of Physics and Electronics, Central South University, Changsha 410083, China
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3
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Solis FJ, Olvera de la Cruz M. Pimples reduce and dimples enhance flat dielectric surface image repulsion. J Chem Phys 2021; 155:104703. [PMID: 34525828 DOI: 10.1063/5.0058810] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
In solid-liquid, or liquid-liquid, interfaces with dielectric contrast, charged particles interact with the induced polarization charge of the interface. These interactions contribute to an effective self-energy of the bulk ions and mediate ion-ion interactions. For flat interfaces, the self-energy and the mediated interactions are neatly constructed by the image charge method. For other geometries, explicit results are scarce and the problem must be treated via approximations or direct computation. The case of interfaces with roughness is of great practical importance. This article provides analytical results, valid to first-order in perturbation theory, for the self-energy of particles near rough substrates. Explicit formulas are provided for the case of a sinusoidal deformation of a flat surface. Generic deformations can be treated by superposition. In addition to results for the self-energy, the surface polarization charge is presented as a quadrature. The interaction between an ion and the deformed surface is modified by the change in relative distance as well as by the local curvature of the surface. Solid walls, with a lower dielectric constant than the liquid, repel all ions. We show that the repulsion is reduced by local convexity and enhanced by concavity; dimples are more repulsive than pimples.
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Affiliation(s)
- Francisco J Solis
- School of Mathematical and Natural Sciences, Arizona State University, Glendale, Arizona 85306, USA
| | - Monica Olvera de la Cruz
- Department of Chemical and Biological Engineering, Northwestern University, Evanston, Illinois 60208, USA
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4
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Yen WK, Hsu JP. Electrokinetic behavior of a pH-regulated dielectric cylindrical nanopore. J Colloid Interface Sci 2021; 588:94-100. [PMID: 33388590 DOI: 10.1016/j.jcis.2020.12.050] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2020] [Revised: 12/15/2020] [Accepted: 12/16/2020] [Indexed: 10/22/2022]
Abstract
A continuum model is adopted to describe the electrokinetic behavior of a pH-regulated cylindrical nanopore, the surface of which has charge-regulated carboxyl groups. We focus on the influences of the permittivity of the nanopore material, nanopore size, salt concentration, and solution pH on this behavior, and the underlying mechanisms. The influence of the nanopore permittivity becomes significant when a nanopore is shorter than ca. 50 nm. It is interesting to observe that if it is longer than ca. 100 nm, the nanopore conductance decreases with increasing permittivity. If it is sufficiently short, the conductance increases with increasing permittivity. If the nanopore length takes a medium level, the conductance is insensitive to the variation in the permittivity. For a short nanopore (~20 nm), the conductivity increases with increasing permittivity. However, if pH is sufficiently high, it becomes insensitive to permittivity. Although the larger the permittivity the greater the conductivity, in general, this effect becomes insignificant when the bulk salt concentration is sufficiently high, implying that the effect of membrane polarization is important only if the bulk salt concentration is sufficiently low.
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Affiliation(s)
- Wei-Kuan Yen
- Department of Chemical Engineering, National Taiwan University, Taipei 10617, Taiwan
| | - Jyh-Ping Hsu
- Department of Chemical Engineering, National Taiwan University, Taipei 10617, Taiwan; Department of Chemical Engineering, National Taiwan University of Science and Technology, Taipei 10607, Taiwan.
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5
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Yuan J, Antila HS, Luijten E. Particle–particle particle–mesh algorithm for electrolytes between charged dielectric interfaces. J Chem Phys 2021; 154:094115. [DOI: 10.1063/5.0035944] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Jiaxing Yuan
- School of Physics and Astronomy, Shanghai Jiao Tong University, Shanghai 200240, China
- Department of Materials Science and Engineering, Northwestern University, Evanston, Illinois 60208, USA
| | - Hanne S. Antila
- Department of Materials Science and Engineering, Northwestern University, Evanston, Illinois 60208, USA
- Department of Theory and Bio-Systems, Max Planck Institute of Colloids and Interfaces, 14476 Potsdam, Germany
| | - Erik Luijten
- School of Physics and Astronomy, Shanghai Jiao Tong University, Shanghai 200240, China
- Department of Materials Science and Engineering, Northwestern University, Evanston, Illinois 60208, USA
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6
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Bagchi D, Nguyen TD, Olvera de la Cruz M. Surface polarization effects in confined polyelectrolyte solutions. Proc Natl Acad Sci U S A 2020; 117:19677-19684. [PMID: 32747575 PMCID: PMC7443958 DOI: 10.1073/pnas.2007545117] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Understanding nanoscale interactions at the interface between two media with different dielectric constants is crucial for controlling many environmental and biological processes, and for improving the efficiency of energy storage devices. In this contributed paper, we show that polarization effects due to such dielectric mismatch remarkably influence the double-layer structure of a polyelectrolyte solution confined between two charged surfaces. Surprisingly, the electrostatic potential across the adsorbed polyelectrolyte double layer at the confining surface is found to decrease with increasing surface charge density, indicative of a negative differential capacitance. Furthermore, in the presence of polarization effects, the electrostatic energy stored in the double-layer structure is enhanced with an increase in the charge amplification, which is the absorption of ions on a like-charged surface. We also find that all of the important double-layer properties, such as charge amplification, energy storage, and differential capacitance, strongly depend on the polyelectrolyte backbone flexibility and the solvent quality. These interesting behaviors are attributed to the interplay between the conformational entropy of the confined polyelectrolytes, the Coulombic interaction between the charged species, and the repulsion from the surfaces with lower dielectric constant.
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Affiliation(s)
- Debarshee Bagchi
- Department of Materials Science and Engineering, Northwestern University, Evanston, IL 60208
| | - Trung Dac Nguyen
- Department of Chemical and Biological Engineering, Northwestern University, Evanston, IL 60208
| | - Monica Olvera de la Cruz
- Department of Materials Science and Engineering, Northwestern University, Evanston, IL 60208;
- Department of Chemical and Biological Engineering, Northwestern University, Evanston, IL 60208
- Department of Physics and Astronomy, Northwestern University, Evanston, IL 60208
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7
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Russell ST, Raghunathan R, Jimenez AM, Zhang K, Brucks SD, Iacob C, West AC, Gang O, Campos LM, Kumar SK. Impact of Electrostatic Interactions on the Self-Assembly of Charge-Neutral Block Copolyelectrolytes. Macromolecules 2020. [DOI: 10.1021/acs.macromol.9b01293] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
| | | | | | | | | | - Ciprian Iacob
- Department of Material Science and Engineering, Pennsylvania State University, University Park, Pennsylvania 16802, United States
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Nguyen TD, Olvera de la Cruz M. Manipulation of Confined Polyelectrolyte Conformations through Dielectric Mismatch. ACS NANO 2019; 13:9298-9305. [PMID: 31404496 DOI: 10.1021/acsnano.9b03900] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
We demonstrate that a highly charged polyelectrolyte confined in a spherical cavity undergoes reversible transformations between amorphous conformations and a four-fold symmetry morphology as a function of dielectric mismatch between the media inside and outside the cavity. Surface polarization due to dielectric mismatch exhibits an extra "confinement" effect, which is most pronounced within a certain range of the cavity radius and the electrostatic strength between the monomers and counterions and multivalent counterions. For cavities with a charged surface, surface polarization leads to an increased amount of counterions adsorbed in the outer side, further compressing the confined polyelectrolyte into a four-fold symmetry morphology. The equilibrium conformation of the chain is dependent upon several key factors including the relative permittivities of the media inside and outside the cavity, multivalent counterion concentration, cavity radius relative to the chain length, and interface charge density. Our findings offer insights into the effects of dielectric mismatch in packaging and delivery of polyelectrolytes across media with different relative permittivities. Moreover, the reversible transformation of the polyelectrolyte conformations in response to environmental permittivity allows for potential applications in biosensing and medical monitoring.
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Affiliation(s)
- Trung Dac Nguyen
- Department of Chemical and Biological Engineering , Northwestern University , Evanston , Illinois 60208 , United States
| | - Monica Olvera de la Cruz
- Department of Chemical and Biological Engineering , Northwestern University , Evanston , Illinois 60208 , United States
- Department of Materials Science and Engineering , Northwestern University , Evanston , Illinois 60208 , United States
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9
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Zhou S. Effects of interionic non-hard sphere neutral interaction and solvent crowding on differential capacitance curve of electrical double layer. J Chem Phys 2019. [DOI: 10.1063/1.5110660] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023] Open
Affiliation(s)
- S. Zhou
- School of Physics and Electronics, Central South University, Changsha, Hunan 410083, China
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10
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Yuan J, Antila HS, Luijten E. Dielectric Effects on Ion Transport in Polyelectrolyte Brushes. ACS Macro Lett 2019; 8:183-187. [PMID: 35619427 DOI: 10.1021/acsmacrolett.8b00881] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Surface-grafted polyelectrolytes provide a versatile way to create functionalized interfaces and nanochannels with externally controllable properties. Understanding the behavior of ions within the brush-like assemblies is crucial for the further development of these devices. We demonstrate that the ion transport through the brushes is governed by the interplay of electrostatic ion-polymer binding and steric effects, leading to a mobility that depends nonmonotonically on grafting density. However, the ion-polymer binding can be modulated by the dielectric properties of the substrate. As a result, surface polarization suppresses ion mobility near insulating interfaces and enhances it near conducting interfaces, even causing a shift from nonmonotonic to monotonic variation with grafting density.
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11
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Lindgren EB, Quan C, Stamm B. Theoretical analysis of screened many-body electrostatic interactions between charged polarizable particles. J Chem Phys 2019; 150:044901. [PMID: 30709241 DOI: 10.1063/1.5079515] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
This paper builds on two previous studies [Lindgren et al., J. Comput. Phys. 371, 712 (2018) and Quan et al., "A domain decomposition method for the Poisson-Boltzmann solvation models," SIAM J. Sci. Comput. (to be published); e-print arXiv:1807.05384] to devise a new method to solve the problem of calculating electrostatic interactions in a system composed by many dielectric particles, embedded in a homogeneous dielectric medium, which in turn can also be permeated by charge carriers. The system is defined by the charge, size, position, and dielectric constant of each particle, as well as the dielectric constant and the Debye length of the medium. The effects of taking into account the dielectric nature of the particles are explored in selected scenarios where the presence of electrolytes in the medium can significantly influence the total undergoing interactions. The description of the mutual interactions between all particles in the system as being truly of many-body nature reveals how such effects can effectively influence the magnitudes and even directions of the resulting forces, especially those acting on particles that have a null net charge. Particular attention is given to a situation that can be related to colloidal particles in an electrolyte solution, where it is shown that polarization effects alone can substantially raise or lower-depending on the dielectric contrast between the particles and the medium-the energy barrier that divides particle coagulation and flocculation regions, when an interplay between electrostatic and additional van der Waals forces is considered. Overall, the results suggest that for an accurate description of the type of system in question, it is essential to consider particle polarization if the separation between the interacting particles are comparable to or smaller than the Debye length of the medium.
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Affiliation(s)
- Eric B Lindgren
- Aachen Institute for Advanced Study in Computational Engineering Science (AICES), RWTH Aachen University, Schinkelstr. 2, 52062 Aachen, Germany
| | - Chaoyu Quan
- Shenzhen International Center for Mathematics, and Department of Mathematics, Southern University of Science and Technology, Shenzhen, China
| | - Benjamin Stamm
- Center for Computational Engineering, Mathematics Department, RWTH Aachen University, Schinkelstr. 2, 52062 Aachen, Germany
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