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Schneemilch M, Quirke N. Predicting nanoparticle uptake by biological membranes: theory and simulation. MOLECULAR SIMULATION 2021. [DOI: 10.1080/08927022.2021.1996574] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
| | - N. Quirke
- Department of Chemistry, Imperial College, London, UK
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Rouse I, Power D, Brandt EG, Schneemilch M, Kotsis K, Quirke N, Lyubartsev AP, Lobaskin V. First principles characterisation of bio-nano interface. Phys Chem Chem Phys 2021; 23:13473-13482. [PMID: 34109956 DOI: 10.1039/d1cp01116b] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Nanomaterials possess a wide range of potential applications due to their novel properties and exceptionally high activity as a result of their large surface to volume ratios compared to bulk matter. The active surface may present both advantage and risk when the nanomaterials interact with living organisms. As the overall biological impact of nanomaterials is triggered and mediated by interactions at the bio-nano interface, an ability to predict those from the atomistic descriptors, especially before the material is produced, can present enormous advantage for the development of nanotechnology. Fast screening of nanomaterials and their variations for specific biological effects can be enabled using computational materials modelling. The challenge lies in the range of scales that needs to be crossed from the material-specific atomistic representation to the relevant length scales covering typical biomolecules (proteins and lipids). In this work, we present a systematic multiscale approach that allows one to evaluate crucial interactions at the bionano interface from the first principles without any prior information about the material and thus establish links between the details of the nanomaterials structure to protein-nanoparticle interactions. As an example, an advanced computational characterization of titanium dioxide nanoparticles (6 different surfaces of rutile and anatase polymorphs) has been performed. We computed characteristics of the titanium dioxide interface with water using density functional theory for electronic density, used these parameters to derive an atomistic force field, and calculated adsorption energies for essential biomolecules on the surface of titania nanoparticles via direct atomistic simulations and coarse-grained molecular dynamics. Hydration energies, as well as adsorption energies for a set of 40 blood proteins are reported.
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Affiliation(s)
- Ian Rouse
- School of Physics, University College Dublin, Belfield, Dublin 4, Ireland.
| | - David Power
- School of Physics, University College Dublin, Belfield, Dublin 4, Ireland.
| | - Erik G Brandt
- Department of Materials and Environmental Chemistry, Stockholm University, S-10691 Stockholm, Sweden
| | - Matthew Schneemilch
- Department of Chemistry, Imperial College, 301G Molecular Sciences Research Hub, White City Campus, 80 Wood Lane, London W12 OBZ, UK
| | | | - Nick Quirke
- Department of Chemistry, Imperial College, 301G Molecular Sciences Research Hub, White City Campus, 80 Wood Lane, London W12 OBZ, UK
| | - Alexander P Lyubartsev
- Department of Materials and Environmental Chemistry, Stockholm University, S-10691 Stockholm, Sweden
| | - Vladimir Lobaskin
- School of Physics, University College Dublin, Belfield, Dublin 4, Ireland.
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3
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Savenko M, Rivel T, Yesylevskyy S, Ramseyer C. Influence of Substrate Hydrophilicity on Structural Properties of Supported Lipid Systems on Graphene, Graphene Oxides, and Silica. J Phys Chem B 2021; 125:8060-8074. [PMID: 34284579 DOI: 10.1021/acs.jpcb.1c04615] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Pristine graphene, a range of graphene oxides, and silica substrates were used to investigate the effect of surface hydrophilicity on supported lipid bilayers by means of all-atom molecular dynamics simulations. Supported 1,2-dioleoyl-sn-glycero-3-phosphocholine lipid bilayers were found in close-contact conformations with hydrophilic substrates with as low as 5% oxidation level, while self-assembled monolayers occur on pure hydrophobic graphene only. Lipids and water at the surface undergo large redistribution to maintain the stability of the supported bilayers. Deposition of bicelles on increasingly hydrophilic substrates shows the continuous process of reshaping of the supported system and makes intermediate stages between self-assembled monolayers and supported bilayers. The bilayer thickness changes with hydrophilicity in a complex manner, while the number of water molecules per lipid in the hydration layer increases together with hydrophilicity.
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Affiliation(s)
- Mariia Savenko
- Laboratoire Chrono Environnement UMR CNRS 6249, Université de Bourgogne Franche-Comté, 16 route de Gray, 25030 Besançon Cedex, France
| | - Timothée Rivel
- Laboratoire Chrono Environnement UMR CNRS 6249, Université de Bourgogne Franche-Comté, 16 route de Gray, 25030 Besançon Cedex, France.,CEITEC - Central European Institute of Technology, Masaryk University, Kamenice, CZ-62500 Brno, Czech Republic.,National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice, CZ-62500 Brno, Czech Republic
| | - Semen Yesylevskyy
- Laboratoire Chrono Environnement UMR CNRS 6249, Université de Bourgogne Franche-Comté, 16 route de Gray, 25030 Besançon Cedex, France.,Department of Physics of Biological Systems, Institute of Physics of the National Academy of Sciences of Ukraine, Prospect Nauky 46, 03028 Kyiv, Ukraine
| | - Christophe Ramseyer
- Laboratoire Chrono Environnement UMR CNRS 6249, Université de Bourgogne Franche-Comté, 16 route de Gray, 25030 Besançon Cedex, France
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Ivanov M, Lyubartsev AP. Atomistic Molecular Dynamics Simulations of Lipids Near TiO 2 Nanosurfaces. J Phys Chem B 2021; 125:8048-8059. [PMID: 34269053 PMCID: PMC8389913 DOI: 10.1021/acs.jpcb.1c04547] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
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Understanding of
interactions between inorganic nanomaterials and
biomolecules, and particularly lipid bilayers, is crucial in many
biotechnological and biomedical applications, as well as for the evaluation
of possible toxic effects caused by nanoparticles. Here, we present
a molecular dynamics study of adsorption of two important constituents
of the cell membranes, 1,2-dimyristoyl-sn-glycero-3-phosphocholine
(DMPC) and 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine
(POPE), lipids to a number of titanium dioxide planar surfaces, and
a spherical nanoparticle under physiological conditions. By constructing
the number density profiles of the lipid headgroup atoms, we have
identified several possible binding modes and calculated their relative
prevalence in the simulated systems. Our estimates of the adsorption
strength, based on the total fraction of adsorbed lipids, show that
POPE binds to the selected titanium dioxide surfaces stronger than
DMPC, due to the ethanolamine group forming hydrogen bonds with the
surface. Moreover, while POPE shows a clear preference toward anatase
surfaces over rutile, DMPC has a particularly high affinity to rutile(101)
and a lower affinity to other surfaces. Finally, we study how lipid
concentration, addition of cholesterol, as well as titanium dioxide
surface curvature may affect overall adsorption.
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Affiliation(s)
- Mikhail Ivanov
- Department of Materials and Environmental Chemistry, Stockholm University, SE-106 91 Stockholm, Sweden
| | - Alexander P Lyubartsev
- Department of Materials and Environmental Chemistry, Stockholm University, SE-106 91 Stockholm, Sweden
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Contini C, Hindley JW, Macdonald TJ, Barritt JD, Ces O, Quirke N. Size dependency of gold nanoparticles interacting with model membranes. Commun Chem 2020; 3:130. [PMID: 33829115 PMCID: PMC7610534 DOI: 10.1038/s42004-020-00377-y] [Citation(s) in RCA: 50] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023] Open
Abstract
The rapid development of nanotechnology has led to an increase in the number and variety of engineered nanomaterials in the environment. Gold nanoparticles (AuNPs) are an example of a commonly studied nanomaterial whose highly tailorable properties have generated significant interest through a wide range of research fields. In the present work, we characterise the AuNP-lipid membrane interaction by coupling qualitative data with quantitative measurements of the enthalpy change of interaction. We investigate the interactions between citrate-stabilised AuNPs ranging from 5 to 60 nm in diameter and large unilamellar vesicles acting as a model membrane system. Our results reveal the existence of two critical AuNP diameters which determine their fate when in contact with a lipid membrane. The results provide new insights into the size dependent interaction between AuNPs and lipid bilayers which is of direct relevance to nanotoxicology and to the design of NP vectors.
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Affiliation(s)
- Claudia Contini
- grid.7445.20000 0001 2113 8111Department of Chemistry, Molecular Sciences Research Hub, Imperial College London, White City Campus, Wood Lane, W12 0BZ London, UK
| | - James W. Hindley
- grid.7445.20000 0001 2113 8111Department of Chemistry, Molecular Sciences Research Hub, Imperial College London, White City Campus, Wood Lane, W12 0BZ London, UK ,grid.7445.20000 0001 2113 8111Institute of Chemical Biology, Molecular Sciences Research Hub, Imperial College London, White City Campus, Wood Lane, W12 0BZ London, UK
| | - Thomas J. Macdonald
- grid.7445.20000 0001 2113 8111Department of Chemistry, Molecular Sciences Research Hub, Imperial College London, White City Campus, Wood Lane, W12 0BZ London, UK ,grid.83440.3b0000000121901201Department of Chemistry, University College London, Gordon Street, WC1H 0AJ London, UK
| | - Joseph D. Barritt
- grid.7445.20000 0001 2113 8111Department of Life Sciences, Imperial College London, South Kensington Campus, SW7 2AZ London, UK
| | - Oscar Ces
- grid.7445.20000 0001 2113 8111Department of Chemistry, Molecular Sciences Research Hub, Imperial College London, White City Campus, Wood Lane, W12 0BZ London, UK ,grid.7445.20000 0001 2113 8111Institute of Chemical Biology, Molecular Sciences Research Hub, Imperial College London, White City Campus, Wood Lane, W12 0BZ London, UK
| | - Nick Quirke
- grid.7445.20000 0001 2113 8111Department of Chemistry, Molecular Sciences Research Hub, Imperial College London, White City Campus, Wood Lane, W12 0BZ London, UK
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