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Sharma MK, Leong XN, Koh CA, Hartman RL. The crystal orientation of THF clathrates in nano-confinement by in situ polarized Raman spectroscopy. LAB ON A CHIP 2024. [PMID: 38214152 DOI: 10.1039/d3lc00884c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/13/2024]
Abstract
Gas hydrates form at high pressure and low temperatures in marine sediments and permafrost regions of the earth. Despite forming in nanoporous structures, gas hydrates have been extensively studied only in bulk. Understanding nucleation and growth of gas hydrates in nonporous confinement can help create ways for storage and utilization as a future energy source. Herein, we introduce a new method for studying crystal orientation/tilt during tetrahydrofuran (THF) hydrate crystallization under the influence of nano-confinement using polarized Raman spectroscopy. Uniform cylindrical nanometer size pores of anodic aluminum oxide (AAO) are used as a model nano-confinement, and hydrate experiments are performed in a glass microsystem for control of the flash hydrate nucleation kinetics and analysis via in situ polarized Raman spectroscopy. The average THF hydrate crystal tilt of 56 ± 1° and 30.5 ± 0.5° were observed for the 20 nm and 40 nm diameter pores, respectively. Crystal tilt observed in 20 and 40-nanometer-size pores was proportional to the pore diameter, resulting in lower tilt relative to the axis of the confinement at larger diameter pores. The results indicate that the hydrates nucleation and growth mechanism can depend on the nanoconfinement size. A 1.6 ± 0.01 °C to 1.8 ± 0.01 °C depression in melting point compared to the bulk is predicted using the Gibbs-Thomson equation as a direct effect of nucleation in confinement on the hydrate properties.
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Affiliation(s)
- Mrityunjay K Sharma
- Department of Chemical & Biomolecular Engineering, NYU Tandon School of Engineering, Brooklyn, NY, 11201, USA.
| | - Xin Ning Leong
- Department of Chemical & Biomolecular Engineering, NYU Tandon School of Engineering, Brooklyn, NY, 11201, USA.
| | - Carolyn A Koh
- Center for Hydrate Research, Department of Chemical & Biological Engineering, Colorado School of Mines, Golden, CO, 80401, USA
| | - Ryan L Hartman
- Department of Chemical & Biomolecular Engineering, NYU Tandon School of Engineering, Brooklyn, NY, 11201, USA.
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Kim J, Belloni L, Rotenberg B. Grand-canonical molecular dynamics simulations powered by a hybrid 4D nonequilibrium MD/MC method: Implementation in LAMMPS and applications to electrolyte solutions. J Chem Phys 2023; 159:144802. [PMID: 37819001 DOI: 10.1063/5.0168878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Accepted: 09/19/2023] [Indexed: 10/13/2023] Open
Abstract
Molecular simulations in an open environment, involving ion exchange, are necessary to study various systems, from biosystems to confined electrolytes. However, grand-canonical simulations are often computationally demanding in condensed phases. A promising method [L. Belloni, J. Chem. Phys. 151, 021101 (2019)], one of the hybrid nonequilibrium molecular dynamics/Monte Carlo algorithms, was recently developed, which enables efficient computation of fluctuating number or charge density in dense fluids or ionic solutions. This method facilitates the exchange through an auxiliary dimension, orthogonal to all physical dimensions, by reducing initial steric and electrostatic clashes in three-dimensional systems. Here, we report the implementation of the method in LAMMPS with a Python interface, allowing facile access to grand-canonical molecular dynamics simulations with massively parallelized computation. We validate our implementation with two electrolytes, including a model Lennard-Jones electrolyte similar to a restricted primitive model and aqueous solutions. We find that electrostatic interactions play a crucial role in the overall efficiency due to their long-range nature, particularly for water or ion-pair exchange in aqueous solutions. With properly screened electrostatic interactions and bias-based methods, our approach enhances the efficiency of salt-pair exchange in Lennard-Jones electrolytes by approximately four orders of magnitude, compared to conventional grand-canonical Monte Carlo. Furthermore, the acceptance rate of NaCl-pair exchange in aqueous solutions at moderate concentrations reaches about 3% at the maximum efficiency.
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Affiliation(s)
- Jeongmin Kim
- Sorbonne Université, CNRS, Physico-Chimie des Électrolytes et Nanosystèmes Interfaciaux, PHENIX, F-75005 Paris, France
| | - Luc Belloni
- LIONS, NIMBE, CEA, CNRS, Université Paris-Saclay, 91191 Gif-sur-Yvette, France
| | - Benjamin Rotenberg
- Sorbonne Université, CNRS, Physico-Chimie des Électrolytes et Nanosystèmes Interfaciaux, PHENIX, F-75005 Paris, France
- Réseau sur le Stockage Électrochimique de Énergie (RS2E), FR CNRS 3459, 80039 Amiens Cedex, France
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Svintradze DV. Generalization of Young-Laplace, Kelvin, and Gibbs-Thomson equations for arbitrarily curved surfaces. Biophys J 2023; 122:892-904. [PMID: 36703559 PMCID: PMC10027438 DOI: 10.1016/j.bpj.2023.01.028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Revised: 11/02/2022] [Accepted: 01/20/2023] [Indexed: 01/27/2023] Open
Abstract
The Young-Laplace, Kelvin, and Gibbs-Thomson equations form a cornerstone of colloidal and surface sciences and have found successful applications in many subfields of physics, chemistry, and biology. The Gibbs-Thomson effect, for example, predicts that small crystals are in equilibrium with their liquid melt at a lower temperature than large crystals and the positive interfacial energy increases the energy required to form small particles with a high curvature interface. In cases of liquids contained within porous media (confined geometry), the effect indicates decreasing the freezing/melting temperatures and the increment of the temperature is inversely proportional to the pore size. These phenomena can be reformulated for Gaussian maps of macromolecules and can be asked the following question: can one use the equations for predicting the melting temperature and shape of polymer chains in confined geometries? The answer is no, mainly because macromolecules form highly curved surfaces (Gaussian maps), and the equations hold only for simple geometries (sphere, plane, or cylinder). Here, we present general Young-Laplace, Kelvin, and Gibbs-Thomson equations for arbitrarily curved surfaces and apply them to predict temperature distribution on a few protein surfaces. Also, after increased interest toward liquid/liquid phase separation in biology, we derive generic Ostwald ripening and show that for shape-changing condensates, instead of a monotonic growing mechanism, a variety of processes are possible. Due to the generality of equations, we clarify that at appropriate internal/external pressure conditions systems, bounded by surfaces, may adopt any shape and thermal stability is strongly influenced by the geometries of confined spaces.
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Stovbun SV, Skoblin AA, Shilkina NG, Lomakin SM, Zlenko DV. A gel lattice alters the phase state of a solvent. SOFT MATTER 2022; 18:5815-5822. [PMID: 35899804 DOI: 10.1039/d2sm00767c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Some low-molecular-weight substances are able to self-assemble into fiber-like structures (strings) to form gels. One of the examples of such substances is trifluoroacetylated alpha-aminoalcohols (TFAAAs) able to gelate in many organic solvents. Here we report the formation and describe the properties of a layer of an altered solvent covering the strings' surface. The altered solvent layer has a different refractive index and melts at a temperature about several degrees lower than that of the bulk solvent. Moreover, the bulk solvent's melting temperature was also decreased by values far beyond the one expected according to Raoult's law. Based on the Gibbs-Thomson equation it is possible to derive the thickness of the special layer as well as the average gel lattice parameters, which were very stable across the variety of systems investigated.
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Affiliation(s)
- Sergey V Stovbun
- N.N. Semenov Institute of Chemical Physics, RAS, 119334, Kosygina 4/1, Moscow, Russia.
| | - Aleksey A Skoblin
- N.N. Semenov Institute of Chemical Physics, RAS, 119334, Kosygina 4/1, Moscow, Russia.
| | - Natalia G Shilkina
- N.N. Semenov Institute of Chemical Physics, RAS, 119334, Kosygina 4/1, Moscow, Russia.
| | - Sergey M Lomakin
- N.N. Semenov Institute of Chemical Physics, RAS, 119334, Kosygina 4/1, Moscow, Russia.
- N.M. Emanuel Institute of Biochemical Physics, RAS, 119334, Kosygina 4, Moscow, Russia
| | - Dmitry V Zlenko
- N.N. Semenov Institute of Chemical Physics, RAS, 119334, Kosygina 4/1, Moscow, Russia.
- M.V. Lomonosov Moscow State University, Faculty of Biology, 119234, Lenin Hills 1/24, Moscow, Russia
- A.N. Severtson Institute of Ecology and Evolution, 119071, Lenin Avenue, 33, Moscow, Russia
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Lazarenko MM, Zabashta YF, Alekseev AN, Yablochkova KS, Ushcats MV, Dinzhos RV, Vergun LY, Andrusenko D, Bulavin L. Melting of crystallites in a solid porous matrix and the application limits of the Gibbs-Thomson equation . J Chem Phys 2022; 157:034704. [DOI: 10.1063/5.0093327] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
A thermodynamic model is proposed to describe the melting of lamellar crystallite in a solid medium. This model includes a modification of the Gibbs-Thomson equation to make it applicable to the above-mentioned crystallites. The need for such modification is supported experimentally by studying the impact of the surrounding on the melting point of the crystallites. In particular, the application of the model to nanocrystals in open-porous systems makes it possible to determine the analytical relations for the melting point, the heat of melting, and the inverse effective size of the pores. The fitting of the experimental data with these functional relations then allows for the calculation of the nanocrystalline density, pressure in the nanocrystal, difference in the surface tension coefficients at the nanocrystal-matrix interface and melt-matrix interface, as well as the difference in the surface entropies per unit area at the nanocrystal-matrix and melt-matrix interfaces.
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Affiliation(s)
- Maxim M. Lazarenko
- Taras Shevchenko National University of Kyiv Faculty of Physics, Ukraine
| | - Yuri F. Zabashta
- Taras Shevchenko National University of Kyiv Faculty of Physics, Ukraine
| | | | | | | | | | - Lena Yu. Vergun
- Taras Shevchenko National University of Kyiv Faculty of Physics, Ukraine
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Microscopic origin of the effect of substrate metallicity on interfacial free energies. Proc Natl Acad Sci U S A 2021; 118:2108769118. [PMID: 34876519 DOI: 10.1073/pnas.2108769118] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/19/2021] [Indexed: 11/18/2022] Open
Abstract
We investigate the effect of the metallic character of solid substrates on solid-liquid interfacial thermodynamics using molecular simulations. Building on the recent development of a semiclassical Thomas-Fermi model to tune the metallicity in classical molecular dynamics simulations, we introduce a thermodynamic integration framework to compute the evolution of the interfacial free energy as a function of the Thomas-Fermi screening length. We validate this approach against analytical results for empty capacitors and by comparing the predictions in the presence of an electrolyte with values determined from the contact angle of droplets on the surface. The general expression derived in this work highlights the role of the charge distribution within the metal. We further propose a simple model to interpret the evolution of the interfacial free energy with voltage and Thomas-Fermi length, which allows us to identify the charge correlations within the metal as the microscopic origin of the evolution of the interfacial free energy with the metallic character of the substrate. This methodology opens the door to the molecular-scale study of the effect of the metallic character of the substrate on confinement-induced transitions in ionic systems, as reported in recent atomic force microscopy and surface force apparatus experiments.
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