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Althorpe SC. Path Integral Simulations of Condensed-Phase Vibrational Spectroscopy. Annu Rev Phys Chem 2024; 75:397-420. [PMID: 38941531 DOI: 10.1146/annurev-physchem-090722-124705] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/30/2024]
Abstract
Recent theoretical and algorithmic developments have improved the accuracy with which path integral dynamics methods can include nuclear quantum effects in simulations of condensed-phase vibrational spectra. Such methods are now understood to be approximations to the delocalized classical Matsubara dynamics of smooth Feynman paths, which dominate the dynamics of systems such as liquid water at room temperature. Focusing mainly on simulations of liquid water and hexagonal ice, we explain how the recently developed quasicentroid molecular dynamics (QCMD), fast-QCMD, and temperature-elevated path integral coarse-graining simulations (Te PIGS) methods generate classical dynamics on potentials of mean force obtained by averaging over quantum thermal fluctuations. These new methods give very close agreement with one another, and the Te PIGS method has recently yielded excellent agreement with experimentally measured vibrational spectra for liquid water, ice, and the liquid-air interface. We also discuss the limitations of such methods.
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Affiliation(s)
- Stuart C Althorpe
- Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge, United Kingdom;
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2
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Kapil V, Kovács DP, Csányi G, Michaelides A. First-principles spectroscopy of aqueous interfaces using machine-learned electronic and quantum nuclear effects. Faraday Discuss 2024; 249:50-68. [PMID: 37799072 PMCID: PMC10845015 DOI: 10.1039/d3fd00113j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Accepted: 07/18/2023] [Indexed: 10/07/2023]
Abstract
Vibrational spectroscopy is a powerful approach to visualising interfacial phenomena. However, extracting structural and dynamical information from vibrational spectra is a challenge that requires first-principles simulations, including non-Condon and quantum nuclear effects. We address this challenge by developing a machine-learning enhanced first-principles framework to speed up predictive modelling of infrared, Raman, and sum-frequency generation spectra. Our approach uses machine learning potentials that encode quantum nuclear effects to generate quantum trajectories using simple molecular dynamics efficiently. In addition, we reformulate bulk and interfacial selection rules to express them unambiguously in terms of the derivatives of polarisation and polarisabilities of the whole system and predict these derivatives efficiently using fully-differentiable machine learning models of dielectric response tensors. We demonstrate our framework's performance by predicting the IR, Raman, and sum-frequency generation spectra of liquid water, ice and the water-air interface by achieving near quantitative agreement with experiments at nearly the same computational efficiency as pure classical methods. Finally, to aid the experimental discovery of new phases of nanoconfined water, we predict the temperature-dependent vibrational spectra of monolayer water across the solid-hexatic-liquid phases transition.
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Affiliation(s)
- Venkat Kapil
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK.
| | | | - Gábor Csányi
- Engineering Laboratory, University of Cambridge, Cambridge, CB2 1PZ, UK
| | - Angelos Michaelides
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK.
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Lawrence JE, Lieberherr AZ, Fletcher T, Manolopoulos DE. Fast Quasi-Centroid Molecular Dynamics for Water and Ice. J Phys Chem B 2023; 127:9172-9180. [PMID: 37830934 PMCID: PMC10614180 DOI: 10.1021/acs.jpcb.3c05028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 09/21/2023] [Indexed: 10/14/2023]
Abstract
We describe how the fast quasi-centroid molecular dynamics (f-QCMD) method can be applied to condensed-phase systems by approximating the quasi-centroid potential of mean force as a sum of inter- and intramolecular corrections to the classical interaction potential. The corrections are found by using a regularized iterative Boltzmann inversion procedure to recover the inter- and intramolecular quasi-centroid distribution functions obtained from a path integral molecular dynamics simulation. The resulting methodology is found to give good agreement with a previously published QCMD dipole absorption spectrum for liquid water and satisfactory agreement for ice. It also gives good agreement with spectra from a recent implementation of CMD that uses a precomputed elevated temperature potential of mean force. Modern centroid molecular dynamics methods, therefore, appear to be reaching a consensus regarding the impact of nuclear quantum effects on the vibrational spectra of water and ice.
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Affiliation(s)
| | - Annina Z. Lieberherr
- Physical
and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QZ, United
Kingdom
| | - Theo Fletcher
- Physical
and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QZ, United
Kingdom
| | - David E. Manolopoulos
- Physical
and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QZ, United
Kingdom
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4
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Videla PE, Batista VS. Matsubara dynamics approximation for generalized multi-time correlation functions. J Chem Phys 2023; 158:2889027. [PMID: 37154285 DOI: 10.1063/5.0146654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Accepted: 04/21/2023] [Indexed: 05/10/2023] Open
Abstract
We introduce a semi-classical approximation for calculating generalized multi-time correlation functions based on Matsubara dynamics, a classical dynamics approach that conserves the quantum Boltzmann distribution. This method is exact for the zero time and harmonic limits and reduces to classical dynamics when only one Matsubara mode is considered (i.e., the centroid). Generalized multi-time correlation functions can be expressed as canonical phase-space integrals, involving classically evolved observables coupled through Poisson brackets in a smooth Matsubara space. Numerical tests on a simple potential show that the Matsubara approximation exhibits better agreement with exact results than classical dynamics, providing a bridge between the purely quantum and classical descriptions of multi-time correlation functions. Despite the phase problem that prevents practical applications of Matsubara dynamics, the reported work provides a benchmark theory for the future development of quantum-Boltzmann-preserving semi-classical approximations for studies of chemical dynamics in condensed phase systems.
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Affiliation(s)
- Pablo E Videla
- Department of Chemistry, Yale University, 225 Prospect Street, New Haven, Connecticut 06520-8107, USA
| | - Victor S Batista
- Department of Chemistry, Yale University, 225 Prospect Street, New Haven, Connecticut 06520-8107, USA
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Prada A, Pós ES, Althorpe SC. Comparison of Matsubara dynamics with exact quantum dynamics for an oscillator coupled to a dissipative bath. J Chem Phys 2023; 158:114106. [PMID: 36948794 DOI: 10.1063/5.0138250] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/17/2023] Open
Abstract
We report the first numerical calculations in which converged Matsubara dynamics is compared directly with exact quantum dynamics with no artificial damping of the time-correlation functions (TCFs). The system treated is a Morse oscillator coupled to a harmonic bath. We show that, when the system-bath coupling is sufficiently strong, the Matsubara calculations can be converged by explicitly including up to M = 200 Matsubara modes, with the remaining modes included as a harmonic "tail" correction. The resulting Matsubara TCFs are in near-perfect agreement with the exact quantum TCFs, for non-linear as well as linear operators, at a temperature at which the TCFs are dominated by quantum thermal fluctuations. These results provide compelling evidence that incoherent classical dynamics can arise in the condensed phase at temperatures at which the statistics are dominated by quantum (Boltzmann) effects, as a result of smoothing of imaginary-time Feynman paths. The techniques developed here may also lead to efficient methods for benchmarking system-bath dynamics in the overdamped regime.
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Affiliation(s)
- Adam Prada
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - Eszter S Pós
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - Stuart C Althorpe
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
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Chen Z, Yang Y. Incorporating Nuclear Quantum Effects in Molecular Dynamics with a Constrained Minimized Energy Surface. J Phys Chem Lett 2023; 14:279-286. [PMID: 36595586 DOI: 10.1021/acs.jpclett.2c02905] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
The accurate incorporation of nuclear quantum effects in large-scale molecular dynamics (MD) simulations remains a significant challenge. Recently, we combined constrained nuclear-electronic orbital (CNEO) theory with classical MD and obtained a new approach (CNEO-MD) that can accurately and efficiently incorporate nuclear quantum effects into classical simulations. In this Letter, we provide the theoretical foundation for CNEO-MD by developing an alternative formulation of the equations of motion for MD. In this new formulation, the expectation values of quantum nuclear positions evolve classically on an effective energy surface that is obtained from a constrained energy minimization procedure when solving for the quantum nuclear wave function, thus enabling the incorporation of nuclear quantum effects in classical MD simulations. For comparison with other existing approaches, we examined a series of model systems and found that this new MD approach is significantly more accurate than the conventional way of performing classical MD and generally outperforms centroid MD and ring-polymer MD in describing vibrations in these model systems.
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Affiliation(s)
- Zehua Chen
- Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin-Madison, 1101 University Avenue, Madison, Wisconsin53706, United States
| | - Yang Yang
- Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin-Madison, 1101 University Avenue, Madison, Wisconsin53706, United States
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Lambropoulos K, Alvertis AM, Morphis A, Simserides C. Cyclo[18]carbon including zero-point motion: ground state, first singlet and triplet excitations, and hole transfer. Phys Chem Chem Phys 2022; 24:7779-7787. [PMID: 35293921 DOI: 10.1039/d2cp00343k] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Recent synthesis of cyclo[18]carbon has spurred increasing interest in carbon rings. We focus on a comparative inspection of ground and excited states, as well as of hole transfer properties of cumulenic and polyynic cyclo[18]carbon via Density Functional Theory (DFT), time-dependent DFT (TD-DFT) and real-time time-dependent DFT (RT-TDDFT). Zero-point vibrations are also accounted for, using a Monte Carlo sampling technique and a less exact, yet mode-resolved, quadratic approximation. The inclusion of zero-point vibrations leads to a red-shift on the HOMO-LUMO gap and the first singlet and triplet excitation energies of both conformations, correcting the values of the 'static' configurations by 9% to 24%. Next, we oxidize the molecule, creating a hole at one carbon atom. Hole transfer along polyynic cyclo[18]carbon is decreased in magnitude compared to its cumulenic counterpart and lacks the symmetric features the latter displays. Contributions by each mode to energy changes and hole transfer between diametrically opposed atoms vary, with specific bond-stretching modes being dominant.
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Affiliation(s)
- Konstantinos Lambropoulos
- Department of Physics, National and Kapodistrian University of Athens, Panepistimiopolis, Zografos GR-15784, Athens, Greece.
| | - Antonios M Alvertis
- Cavendish Laboratory, University of Cambridge, J. J. Thomson Avenue, Cambridge CB3 0HE, UK.,Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA. .,Department of Physics, University of California Berkeley, Berkeley, California 94720, USA
| | - Andreas Morphis
- Department of Physics, National and Kapodistrian University of Athens, Panepistimiopolis, Zografos GR-15784, Athens, Greece.
| | - Constantinos Simserides
- Department of Physics, National and Kapodistrian University of Athens, Panepistimiopolis, Zografos GR-15784, Athens, Greece.
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Fletcher T, Zhu A, Lawrence JE, Manolopoulos DE. Fast quasi-centroid molecular dynamics. J Chem Phys 2021; 155:231101. [PMID: 34937347 DOI: 10.1063/5.0076704] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We describe a fast implementation of the quasi-centroid molecular dynamics (QCMD) method in which the quasi-centroid potential of mean force is approximated as a separable correction to the classical interaction potential. This correction is obtained by first calculating quasi-centroid radial and angular distribution functions in a short path integral molecular dynamics simulation and then using iterative Boltzmann inversion to obtain an effective classical potential that reproduces these distribution functions in a classical NVT simulation. We illustrate this approach with example applications to the vibrational spectra of gas phase molecules, obtaining excellent agreement with QCMD reference calculations for water and ammonia and good agreement with the quantum mechanical vibrational spectrum of methane.
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Affiliation(s)
- Theo Fletcher
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QZ, United Kingdom
| | - Andrew Zhu
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QZ, United Kingdom
| | - Joseph E Lawrence
- Laboratory of Physical Chemistry, ETH Zürich, 8093 Zürich, Switzerland
| | - David E Manolopoulos
- Physical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, South Parks Road, Oxford OX1 3QZ, United Kingdom
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