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Kim TL, Lim H, Denison MIJ, Oh C. Transcriptomic and Physiological Analysis Reveals Genes Associated with Drought Stress Responses in Populus alba × Populus glandulosa. PLANTS (BASEL, SWITZERLAND) 2023; 12:3238. [PMID: 37765403 PMCID: PMC10535988 DOI: 10.3390/plants12183238] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Revised: 09/07/2023] [Accepted: 09/10/2023] [Indexed: 09/29/2023]
Abstract
Drought stress affects plant productivity by altering plant responses at the morphological, physiological, and molecular levels. In this study, we identified physiological and genetic responses in Populus alba × Populus glandulosa hybrid clones 72-30 and 72-31 after 12 days of exposure to drought treatment. After 12 days of drought treatment, glucose, fructose, and sucrose levels were significantly increased in clone 72-30 under drought stress. The Fv/Fo and Fv/Fm values in both clones also decreased under drought stress. The changes in proline, malondialdehyde, and H2O2 levels were significant and more pronounced in clone 72-30 than in clone 72-31. The activities of antioxidant-related enzymes, such as catalase and ascorbate peroxidase, were significantly higher in the 72-31 clone. To identify drought-related genes, we conducted a transcriptomic analysis in P. alba × P. glandulosa leaves exposed to drought stress. We found 883 up-regulated and 305 down-regulated genes in the 72-30 clone and 279 and 303 in the 72-31 clone, respectively. These differentially expressed genes were mainly in synthetic pathways related to proline, abscisic acid, and antioxidants. Overall, clone 72-31 showed better drought tolerance than clone 72-30 under drought stress, and genetic changes also showed different patterns.
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Affiliation(s)
- Tae-Lim Kim
- Department of Forest Bioresources, National Institute of Forest Science, Suwon 16631, Republic of Korea; (T.-L.K.); (C.O.)
| | - Hyemin Lim
- Department of Forest Bioresources, National Institute of Forest Science, Suwon 16631, Republic of Korea; (T.-L.K.); (C.O.)
| | | | - Changyoung Oh
- Department of Forest Bioresources, National Institute of Forest Science, Suwon 16631, Republic of Korea; (T.-L.K.); (C.O.)
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Seki S, Nakaniwa T, Castro-Hartmann P, Sader K, Kawamoto A, Tanaka H, Qian P, Kurisu G, Fujii R. Structural insights into blue-green light utilization by marine green algal light harvesting complex II at 2.78 Å. BBA ADVANCES 2022; 2:100064. [PMID: 37082593 PMCID: PMC10074980 DOI: 10.1016/j.bbadva.2022.100064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2022] [Revised: 11/09/2022] [Accepted: 11/09/2022] [Indexed: 11/13/2022] Open
Abstract
Light-harvesting complex II (LHCII) present in plants and green algae absorbs solar energy to promote photochemical reactions. A marine green macroalga, Codium fragile, exhibits the unique characteristic of absorbing blue-green light from the sun during photochemical reactions while being underwater owing to the presence of pigment-altered LHCII called siphonaxanthin-chlorophyll a/b-binding protein (SCP). In this study, we determined the structure of SCP at a resolution of 2.78 Å using cryogenic electron microscopy. SCP has a trimeric structure, wherein each monomer containing two lutein and two chlorophyll a molecules in the plant-type LHCII are replaced by siphonaxanthin and its ester and two chlorophyll b molecules, respectively. Siphonaxanthin occupies the binding site in SCP having a polarity in the trimeric inner core, and exhibits a distorted conjugated chain comprising a carbonyl group hydrogen bonded to a cysteine residue of apoprotein. These features suggest that the siphonaxanthin molecule is responsible for the characteristic green absorption of SCP. The replaced chlorophyll b molecules extend the region of the stromal side chlorophyll b cluster, spanning two adjacent monomers.
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Affiliation(s)
- Soichiro Seki
- Division of Molecular Materials Science, Graduate School of Science, Osaka City University, 3-3-138, Sugimoto, Sumiyoshi-ku, Osaka 558–8585, Japan
| | - Tetsuko Nakaniwa
- Institute for Protein Research, Osaka University, Suita, Osaka 565–0871, Japan
| | - Pablo Castro-Hartmann
- Materials and Structural Analysis, Thermo Fisher Scientific, Achtseweg Noord 5, 5651 GG Eindhoven, Netherlands
| | - Kasim Sader
- Materials and Structural Analysis, Thermo Fisher Scientific, Achtseweg Noord 5, 5651 GG Eindhoven, Netherlands
| | - Akihiro Kawamoto
- Institute for Protein Research, Osaka University, Suita, Osaka 565–0871, Japan
- Institute for Open and Transdisciplinary Research Initiatives (OTRI), Osaka University, Suita, Osaka 565–9871, Japan
| | - Hideaki Tanaka
- Institute for Protein Research, Osaka University, Suita, Osaka 565–0871, Japan
- Institute for Open and Transdisciplinary Research Initiatives (OTRI), Osaka University, Suita, Osaka 565–9871, Japan
| | - Pu Qian
- Materials and Structural Analysis, Thermo Fisher Scientific, Achtseweg Noord 5, 5651 GG Eindhoven, Netherlands
| | - Genji Kurisu
- Institute for Protein Research, Osaka University, Suita, Osaka 565–0871, Japan
- Institute for Open and Transdisciplinary Research Initiatives (OTRI), Osaka University, Suita, Osaka 565–9871, Japan
| | - Ritsuko Fujii
- Division of Molecular Materials Science, Graduate School of Science, Osaka City University, 3-3-138, Sugimoto, Sumiyoshi-ku, Osaka 558–8585, Japan
- Department of Chemistry, Graduate School of Science, Osaka Metropolitan University, 3-3-138, Sugimoto, Sumiyoshi-ku, Osaka 558–8585, Japan
- Research Center for Artificial Photosynthesis (ReCAP), Osaka Metropolitan University, 3-3-138, Sugimoto, Sumiyoshi-ku, Osaka 558–8585, Japan
- Corresponding author.
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Bru P, Steen CJ, Park S, Amstutz CL, Sylak-Glassman EJ, Lam L, Fekete A, Mueller MJ, Longoni F, Fleming GR, Niyogi KK, Malnoë A. The major trimeric antenna complexes serve as a site for qH-energy dissipation in plants. J Biol Chem 2022; 298:102519. [PMID: 36152752 PMCID: PMC9615032 DOI: 10.1016/j.jbc.2022.102519] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2022] [Revised: 09/08/2022] [Accepted: 09/10/2022] [Indexed: 11/28/2022] Open
Abstract
Plants and algae are faced with a conundrum: harvesting sufficient light to drive their metabolic needs while dissipating light in excess to prevent photodamage, a process known as nonphotochemical quenching. A slowly relaxing form of energy dissipation, termed qH, is critical for plants’ survival under abiotic stress; however, qH location in the photosynthetic membrane is unresolved. Here, we tested whether we could isolate subcomplexes from plants in which qH was induced that would remain in an energy-dissipative state. Interestingly, we found that chlorophyll (Chl) fluorescence lifetimes were decreased by qH in isolated major trimeric antenna complexes, indicating that they serve as a site for qH-energy dissipation and providing a natively quenched complex with physiological relevance to natural conditions. Next, we monitored the changes in thylakoid pigment, protein, and lipid contents of antenna with active or inactive qH but did not detect any evident differences. Finally, we investigated whether specific subunits of the major antenna complexes were required for qH but found that qH was insensitive to trimer composition. Because we previously observed that qH can occur in the absence of specific xanthophylls, and no evident changes in pigments, proteins, or lipids were detected, we tentatively propose that the energy-dissipative state reported here may stem from Chl–Chl excitonic interaction.
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Affiliation(s)
- Pierrick Bru
- Umeå Plant Science Centre (UPSC), Department of Plant Physiology, Umeå University, 901 87 Umeå, Sweden
| | - Collin J Steen
- Department of Chemistry, University of California, Berkeley, CA 94720, USA; Molecular Biophysics and Integrated Bioimaging Division (formerly Physical Biosciences Division), Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; Kavli Energy Nanoscience Institute, Berkeley, CA 94720, USA
| | - Soomin Park
- Department of Chemistry, University of California, Berkeley, CA 94720, USA; Molecular Biophysics and Integrated Bioimaging Division (formerly Physical Biosciences Division), Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; Kavli Energy Nanoscience Institute, Berkeley, CA 94720, USA; School of Energy, Materials and Chemical Engineering, Korea University of Technology and Education, Cheonan, Chungnam 31253, Republic of Korea
| | - Cynthia L Amstutz
- Howard Hughes Medical Institute, Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
| | - Emily J Sylak-Glassman
- Department of Chemistry, University of California, Berkeley, CA 94720, USA; Molecular Biophysics and Integrated Bioimaging Division (formerly Physical Biosciences Division), Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA
| | - Lam Lam
- Molecular Biophysics and Integrated Bioimaging Division (formerly Physical Biosciences Division), Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; Kavli Energy Nanoscience Institute, Berkeley, CA 94720, USA; Graduate Group in Biophysics, University of California, Berkeley, CA 94720, USA
| | - Agnes Fekete
- Julius-von-Sachs-Institute, Biocenter, Pharmaceutical Biology, University of Wuerzburg, D-97082 Wuerzburg, Germany
| | - Martin J Mueller
- Julius-von-Sachs-Institute, Biocenter, Pharmaceutical Biology, University of Wuerzburg, D-97082 Wuerzburg, Germany
| | - Fiamma Longoni
- Institute of Biology, University of Neuchâtel, 2000 Neuchâtel, Switzerland
| | - Graham R Fleming
- Department of Chemistry, University of California, Berkeley, CA 94720, USA; Molecular Biophysics and Integrated Bioimaging Division (formerly Physical Biosciences Division), Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; Kavli Energy Nanoscience Institute, Berkeley, CA 94720, USA; Graduate Group in Biophysics, University of California, Berkeley, CA 94720, USA
| | - Krishna K Niyogi
- Molecular Biophysics and Integrated Bioimaging Division (formerly Physical Biosciences Division), Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; Howard Hughes Medical Institute, Department of Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
| | - Alizée Malnoë
- Umeå Plant Science Centre (UPSC), Department of Plant Physiology, Umeå University, 901 87 Umeå, Sweden.
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Short AH, Fay TP, Crisanto T, Hall J, Steen CJ, Niyogi KK, Limmer DT, Fleming GR. Xanthophyll-cycle based model of the rapid photoprotection of Nannochloropsis in response to regular and irregular light/dark sequences. J Chem Phys 2022; 156:205102. [DOI: 10.1063/5.0089335] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract <p>We explore the photoprotection dynamics of Nannochloropsis oceanica using time-correlated single photon counting under regular and irregular actinic light sequences. The varying light sequences mimic natural conditions, allowing us to probe the real-time response of non-photochemical quenching (NPQ) pathways. Durations of fluctuating light exposure during a fixed total experimental time and prior light exposure of the algae are both found to have a profound effect on NPQ. These observations are rationalized with a quantitative model based on the xanthophyll cycle and the protonation of LHCX1. The model is able to accurately describe the dynamics of non-photochemical quenching across a variety of light sequences. The combined model and observations suggest that the accumulation of a quenching complex, likely zeaxanthin bound to a protonated LHCX1, is responsible for the gradual rise in NPQ. Additionally, the model makes specific predictions for the light sequence dependence of xanthophyll concentrations that are in reasonable agreement with independent chromatography measurements taken during a specific light/dark sequence.
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Affiliation(s)
- Audrey H Short
- University of California Berkeley, United States of America
| | - Thomas Patrick Fay
- Department of Chemistry, University of California Berkeley Department of Chemistry, United States of America
| | - Thien Crisanto
- University of California Berkeley, United States of America
| | - Johanna Hall
- Georgia Institute of Technology, United States of America
| | - Collin J Steen
- Chemistry, University of California Berkeley, United States of America
| | | | - David T Limmer
- Chemistry, University of California Berkeley Department of Chemistry, United States of America
| | - Graham R. Fleming
- Department of Chemistry, University of California Berkeley College of Chemistry, United States of America
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