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Jantzen B, Hansen HH. Differences in Donor Animal Production Stage Affect Repeatability of In Vitro Rumen Fermentation Kinetics. Animals (Basel) 2023; 13:2993. [PMID: 37760393 PMCID: PMC10525536 DOI: 10.3390/ani13182993] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Revised: 09/15/2023] [Accepted: 09/20/2023] [Indexed: 09/29/2023] Open
Abstract
In vitro gas production techniques (IVGPT) are widely used to screen feeds and feed additives to reduce the number of animals needed for experiments, which in turn, reduces costs and increases animal welfare. However, information about repeatability is scarce. The objective of this study was to evaluate the variation from in vitro gas production fermentations in the same laboratory using the same feed substrate. The source of rumen fluid used in the fermentations was from two different farms with either cannulated lactating dairy cows or cannulated fasting heifers, representing two distinct stages of production (donor types). Seventeen 24 h fermentations, undertaken during a year, were used to evaluate the variation between the following parameters: gas curve parameters, baseline-corrected total gas production (TGP (mL at Standard Temperature and Pressure (STP))/g incubated dry matter (DM)), methane concentration (%) and yield (mL gas at STP/g DM), pH and degraded dry matter (dDM). Significant differences between donor types were found for the pH of the rumen fluid from individual animals and pH of fermented fluid. However, no significant differences were observed within donor type. The means for methane concentration and yield, after 24 h of fermentation, were not significantly different between or within donor types. Rate of early gas production was significantly different between donor types, but baseline-corrected TGP was not significantly different at 24 h. No dDM differences after 24 h of fermentation between or within donor types were detected. Gas production curves were different between donor types, being either a monophasic version of the sigmoidal model or an exponential curve for the heifers and the production animals, respectively. No differences were observed within type. Repeatability of rumen fluid (CVRF), calculated as the coefficient of variation, and the associated parameters, which were investigated, was best for methane yield (CVRFALL = 0.3%) and least for TGP at 3 h (CVRFALL = 3%). Repeatability was dependent on donor type.
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Affiliation(s)
- Britt Jantzen
- Department of Veterinary and Animal Sciences, University of Copenhagen, Grønnegårdsvej 3, 1870 Frederiksberg C, Denmark;
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Cantalapiedra-Hijar G, Martinez-Fernandez G, Forano E, Denman SE, Morgavi D, McSweeney CS. The extent of nitrogen isotopic fractionation in rumen bacteria is associated with changes in rumen nitrogen metabolism. PLoS One 2023; 18:e0291243. [PMID: 37703250 PMCID: PMC10499230 DOI: 10.1371/journal.pone.0291243] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Accepted: 08/25/2023] [Indexed: 09/15/2023] Open
Abstract
Nitrogen use efficiency is an important index in ruminants and can be indirectly evaluated through the N isotopic discrimination between the animal and its diet (Δ15Nanimal-diet). The concentration and source of N may determine both the extent of the N isotopic discrimination in bacteria and N use efficiency. We hypothesised that the uptake and release of ammonia by rumen bacteria will affect the natural 15N enrichment of the bacterial biomass over their substrates (Δ15Nbacteria-substrate) and thereby further impacting Δ15Nanimal-diet. To test this hypothesis, two independent in vitro experiments were conducted using two contrasting N sources (organic vs inorganic) at different levels either in pure rumen bacteria culture incubations (Experiment #1) or in mixed rumen cultures (Experiment #2). In Experiment #1, tryptone casein or ammonium chloride were tested at low (1 mM N) and high (11.5 mM N) concentrations on three rumen bacterial strains (Fibrobacter succinogenes, Eubacterium limosum and Xylanibacter ruminicola) incubated in triplicate in anaerobic batch monocultures during 48h. In Experiment #2 mixed rumen cultures were incubated during 120 h with peptone or ammonium chloride at five different levels of N (1.5, 3, 4.5, 6 and 12-mM). In experiment #1, Δ15Nbacteria-substrate was lowest when the ammonia-consumer bacterium Fibrobacter succinogenes was grown on ammonium chloride, and highest when the proteolytic bacterial strain Xylanibacter ruminicola was grown on tryptone. In experiment #2, Δ15Nbacteria-substrate was lower with inorganic (ammonium chloride) vs organic (peptone) N source. A strong negative correlation between Δ15Nbacteria-substrate and Rikenellaceae_RC9_gut_group, a potential fibrolytic rumen bacterium, was detected. Together, our results showed that Δ15Nbacteria-substrate may change according to the balance between synthesis of microbial protein from ammonia versus non-ammonia N sources and confirm the key role of rumen bacteria as modulators of Δ15Nanimal-diet.
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Affiliation(s)
| | | | - Evelyne Forano
- INRAE, Université Clermont Auvergne, UMR 454 MEDIS, Saint-Genès-Champanelle, France
| | | | - Diego Morgavi
- INRAE, Université Clermont Auvergne, Vetagro Sup, UMRH, Saint-Genes-Champanelle, France
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Pastorelli G, Simeonidis K, Faustini M, Le Mura A, Cavalleri M, Serra V, Attard E. Chemical Characterization and In Vitro Gas Production Kinetics of Alternative Feed Resources for Small Ruminants in the Maltese Islands. Metabolites 2023; 13:762. [PMID: 37367919 DOI: 10.3390/metabo13060762] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Revised: 06/12/2023] [Accepted: 06/14/2023] [Indexed: 06/28/2023] Open
Abstract
The ever-increasing human population, the problem associated with climate change and recent crises-COVID-19 disease and trade conflicts-all impacted on the availability and cost of animal feed raw materials. This is clearly visible in realities which heavily rely on importation such as islands and small states, where producers involved in the agricultural sector were strongly affected by the sharp increase in prices. To deal with these global issues, alternative resources are perceived to replace conventional ingredients. This work aimed at assessing the nutritive value of different resources (sheep feed, mature carob, Maltese bread, wild asparagus, prickly lettuce, and loquat) for small ruminants present in the Maltese Islands, analyzing their chemical composition, gas production kinetics and antioxidant properties. In general, the variation in chemical composition resulted in different rumen fermentation kinetics (p < 0.007). The ratio between GP-24 h and GP-48 h was higher in Maltese bread than other substrates; loquat, prickly lettuce and wild asparagus showed lower fermentation kinetics in accordance with their high NDF and ADF contents. The antioxidant activity may be partially related to the polyphenolic content that was higher in wild asparagus, prickly lettuce and loquat. All feed characteristic confirmed their potential to be included as ingredients in ruminant diets and as a source of fiber.
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Affiliation(s)
- Grazia Pastorelli
- Department of Veterinary Medicine and Animal Sciences, University of Milano, Via dell'Università 6, 26900 Lodi, Italy
| | - Kalliroi Simeonidis
- Department of Veterinary Medicine and Animal Sciences, University of Milano, Via dell'Università 6, 26900 Lodi, Italy
| | - Massimo Faustini
- Department of Veterinary Medicine and Animal Sciences, University of Milano, Via dell'Università 6, 26900 Lodi, Italy
| | - Angelo Le Mura
- Indipendent Researcher, 28053 Castelletto sopra Ticino, Italy
| | - Mariagrazia Cavalleri
- Department of Veterinary Medicine and Animal Sciences, University of Milano, Via dell'Università 6, 26900 Lodi, Italy
- Research-Institute for Farm Animal Biology (FBN), Institute of Nutritional Physiology, Wilhelm-Stahl-Allee 2, 18196 Dummerstorf, Germany
| | - Valentina Serra
- Department of Veterinary Medicine and Animal Sciences, University of Milano, Via dell'Università 6, 26900 Lodi, Italy
| | - Everaldo Attard
- Division of Rural Sciences and Food Systems, Institute of Earth Systems, University of Malta, MSD 2080 Msida, Malta
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Dhakal R, Copani G, Cappellozza BI, Milora N, Hansen HH. The Effect of Direct-Fed Microbials on In-Vitro Rumen Fermentation of Grass or Maize Silage. FERMENTATION-BASEL 2023. [DOI: 10.3390/fermentation9040347] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2023]
Abstract
Direct-fed microbial products (DFM) are probiotics that can be used advantageously in ruminant production. The in vitro gas production technique (IVGPT) is a method to simulate rumen fermentation and can be used to measure degradation, gas production, and products of fermentation of such additives. However, inter-laboratory differences have been reported. Therefore, tests using the same material were used to validate laboratory reproducibility. The objective of this study was to assess the effect of adding two DFM formulations on fermentation kinetics, methane (CH4) production, and feed degradation in two different basal feeds while validating a newly established IVGPT laboratory. Six treatments, with three replicates each, were tested simultaneously at the established IVGPT lab at the University of Copenhagen, and the new IVGPT lab at Chr. Hansen Laboratories. Maize silage (MS) and grass silage (GS) were fermented with and without the following DFM: P1: Ligilactobacillus animalis and Propionibacterium freudenreichii (total 1.5 × 107 CFU/mL), P2: P1 with added Bacillus subtilis and B. licheniformis (total 5.9 × 107 CFU/mL). The DFM were anaerobically incubated in rumen fluid and buffer with freeze-dried silage samples for 48 h. Total gas production (TGP: mL at Standard Temperature and Pressure/gram of organic matter), pH, organic matter degradability (dOM), CH4concentration (MC) and yield (MY), and volatile fatty acid (VFA) production and profiles were measured after fermentation. No significant differences between the laboratories were detected for any response variables. The dOM of MS (78.3%) was significantly less than GS (81.4%), regardless of the DFM added (P1 and P2). There were no significant differences between the effects of the DFM within the feed type. MS produced significantly more gas than GS after 48 h, but GS with DFM produced significantly more gas at 3 and 9 h and a similar gas volume at 12 h. Both DFM increased TGP significantly in GS at 48 h. There was no difference in total VFA production. However, GS with and without probiotics produced significantly more propionic acid and less butyric acid than MS with and without probiotics. Adding P2 numerically reduced the total methane yield by 4–6% in both MS and GS. The fermentation duration of 48 h, used to determine maximum potential dOM, may give misleading results. This study showed that it is possible to standardize the methodology to achieve reproducibility of IVGPT results. Furthermore, the results suggest that the P2 DFM may have the potential to reduce CH4 production without affecting organic matter degradation.
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Affiliation(s)
- Rajan Dhakal
- Department of Veterinary and Animal Sciences, University of Copenhagen, Grønnegårdsvej 3, 1870 Frederiksberg C, Denmark
| | - Giuseppe Copani
- Chr. Hansen Animal and Plant Health & Nutrition, Bøge Alle 10-12, 2970 Hørsholm, Denmark
| | - Bruno Ieda Cappellozza
- Chr. Hansen Animal and Plant Health & Nutrition, Bøge Alle 10-12, 2970 Hørsholm, Denmark
| | - Nina Milora
- Chr. Hansen Animal and Plant Health & Nutrition, Bøge Alle 10-12, 2970 Hørsholm, Denmark
| | - Hanne Helene Hansen
- Department of Veterinary and Animal Sciences, University of Copenhagen, Grønnegårdsvej 3, 1870 Frederiksberg C, Denmark
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Physicochemical characterisation of barley straw treated with sodium hydroxide or urea and its digestibility and in vitro fermentability in ruminants. Sci Rep 2022; 12:20530. [PMID: 36446835 PMCID: PMC9708690 DOI: 10.1038/s41598-022-24738-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2022] [Accepted: 11/18/2022] [Indexed: 11/30/2022] Open
Abstract
The development of strategies to overcome the shortage of forage due to persistently low rainfall is becoming a central task for animal nutrition in research and practice. In this study, it was investigated how the treatment of straw with NaOH or feed urea in a practicable procedure for modern farms affects rumen fermentation (gas production and greenhouse gas concentration) as well as the digestibility of feed energy and nutrients. For this purpose, the treatments were tested individually and in different proportions in a total mixed ration (TMR) in ruminal batch cultures in vitro and in a digestibility trial with sheep. In order to explain the observed effects at the molecular level, descriptive data from 13C solid state nuclear magnetic resonance (NMR) and Fourier-transform infrared (FTIR) spectroscopy were obtained. NaOH treatment of straw increased crude ash (CA), non-fibrous carbohydrates, digestible energy (DE), and metabolizable energy (ME) concentration, whereas the proportion of neutral detergent fibre (aNDFom) and hemicellulose decreased. In urea treated straw, NH3-N and crude protein increased, whereas acid detergent lignin (ADL), DE, and ME decreased. The physically effective fibre (peNDF8) concentration increased in TMR containing 18% of NaOH or urea treated straw (p < 0.01). The application of straw treatments as pure substrates (not as part of a TMR) increased gas production and decelerated ruminal fermentation (p < 0.05). In vitro organic matter digestibility (IVOMD) of the straw (0.31) increased after NaOH (0.51; p < 0.05) and urea treatment (0.41; p > 0.05). As part of a TMR, straw treatments had no distinct effect on gas production or IVOMD. Concentrations of CH4 and CO2 were likewise not affected. Apparent total tract digestibility of aNDFom, acid detergent fibre (ADFom), hemicellulose, and cellulose increased in the TMR by approximately 10% points following NaOH treatment (p < 0.05). The inclusion of urea treated straw did not affect apparent digestibility. Calculated true digestibility of aNDFom was 0.68, 0.74, and 0.79, of ADFom 0.58, 0.57, and 0.65, and of ADL 0.02, 0.13, and 0.08 in TMR including untreated, NaOH treated, and urea treated straw, respectively. 13C NMR and FTIR analyses consistently revealed that the global structure and crystallinity of the carbohydrates (cellulose and hemicellulose) was not altered by treatment and the concentration of lignin was likewise not affected. Depolymerisation of lignin did not occur. However, NMR signals assigned to acetyl groups were significantly altered indicating that straw treatments disrupted linkages between hemicelluloses and lignin. Moreover, the acetates signal was affected. This signal can be assigned to linkages between ferulic acids and hemicelluloses (arabinoxylans). FTIR spectra of straw treatments mainly differed at a wavelength of 1730 cm-1 and 1240 cm-1. Disappearance of the 1730 cm-1 peak suggests removal of hemicelluloses or lignin related compounds by treatment. The disappearance of the lignin peak at 1240 cm-1 could be due to conjugated ketone (phenyl-carbonyl) removal or the removal of ferulic and p-coumaric acid acetyl groups. Both treatments are supposed to release fermentable cell wall components (hemicelluloses) from lignin-associated bonds and as a result, straw fibre can be better fermented in the rumen. This contributes to energy supply and increased fibre digestibility at least in the TMR that contained NaOH treated straw. The alkaline straw treatments probably induced a release of phenolics such as ferulic acid and p-coumaric acid, which can be metabolised in the gut and the liver and metabolites might be excreted with the urine. This could notably contribute to metabolic energy losses.
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Bachmann M, Okon P, Blunk C, Kuhnitzsch C, Martens S, Steinhöfel O, Zeyner A. Ensiling and thermic treatment effects on nutrient content, protein solubility, and in vitro fermentation of partial crop faba beans. Anim Feed Sci Technol 2022. [DOI: 10.1016/j.anifeedsci.2022.115349] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Rahavi SMH, Ahmadi F, Vahid A, Moinoddini H, Ghayour M, Tagliapietra F. Technical note: design, development and validation of an automated gas monitoring equipment for measurement of the dynamics of microbial fermentation. MethodsX 2022; 9:101641. [PMID: 35251949 PMCID: PMC8892151 DOI: 10.1016/j.mex.2022.101641] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2021] [Accepted: 02/18/2022] [Indexed: 11/17/2022] Open
Abstract
The present technical note describes design, development and validation of an automated equipment for measurement of kinetics of gas production during fermentation in glass bottles. The overall repeatability and precision of the developed system was evaluated and compared with the manual gas measurement technique in respect to characterization of the fermentation kinetics of ruminant livestock feeds. Two incubations were carried out, during which the GP of six different feeds was measured with the automated system or manual technique. During a 48-hour incubation period, pressure data were collected at 15-minute intervals using automated equipment, yielding 192 head-space pressure measurements for each bottle. In manual measurement, incubations were performed with the nominal 60-mL serum bottle, and headspace pressure was read using a digital pressure gauge and then released at 2, 4, 6, 8, 12, 16, 24, 36, and 48 hours of incubation. The automated equipment recorded greater GP (+11.5%, over the 48-h incubation) than the manual measurement, and the repeatability and coefficient of repeatability values indicated that the GP data obtained with manual equipment were less repeatable. The automated equipment measures the fermentative GP kinetics with greater precision and repeatability than manual technique.An automated batch GP equipment was designed, developed and validated, and a comparison was made with GP data obtained manually using a digital pressure gauge. The automated equipment provided more reliable and repeatable data compared with manual measurement. The automated equipment is available with lower cost and more functionality.
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Amanzougarene Z, Fondevila M. Fitting of the In Vitro Gas Production Technique to the Study of High Concentrate Diets. Animals (Basel) 2020; 10:ani10101935. [PMID: 33096765 PMCID: PMC7590040 DOI: 10.3390/ani10101935] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2020] [Revised: 10/09/2020] [Accepted: 10/12/2020] [Indexed: 11/26/2022] Open
Abstract
Simple Summary The in vitro gas production technique, either based on volume or pressure measurements, was initially set up for the evaluation of the rate and extent of fermentation of feeds for ruminants. Since it is carried out under pH conditions simulating a well-buffered medium (from pH 6.5 to 6.8), it has been generally focused to evaluation of forages and fibrous by-products, or by estimating fermentation of concentrate feeds (cereals, protein sources) for extrapolation of their use in mixed diets. However, it has also been used for determination of the nutritive value of feeds in all-concentrate diets, without taking into account that in such cases pH may range between 6.5 and 5.8, and often below this range, creating unfavourable conditions for bacterial fermentation. Modifying the concentration of bicarbonate ion in the incubation solution allows to adjust the incubation pH to conditions that simulate the in vitro fermentation conditions to those occurring under high-concentrate feeding. This highlights the importance of the incubation pH for the estimation of fermentation of feeds. Abstract In vitro rumen fermentation systems are often adapted to forage feeding conditions, with pH values ranging in a range close to neutrality (between 6.5 and 7.0). Several attempts using different buffers have been made to control incubation pH in order to evaluate microbial fermentation under conditions simulating high concentrate feeding, but results have not been completely successful because of rapid exhaustion of buffering capacity. Recently, a modification of bicarbonate ion concentration in the buffer of incubation solution has been proposed, which, together with using rumen inoculum from donor ruminants given high-concentrate diets, allows for mimicking such conditions in vitro. It is important to consider that the gas volume recorded is in part directly produced from microbial fermentation of substrates, but also indirectly from the buffering capacity of the medium. Thus, the contribution of each (direct and indirect) gas source to the overall production should be estimated. Another major factor affecting fermentation is the rate of passage, but closed batch systems cannot be adapted to its consideration. Therefore, a simple semicontinuous incubation system has been developed, which studies the rate and extent of fermentation by gas production at the time it allows for controlling medium pH and rate of passage by manual replacement of incubation medium by fresh saliva without including rumen inoculum. The application of this system to studies using high concentrate feeding conditions will also be reviewed here.
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Bachmann M, Kuhnitzsch C, Thierbach A, Michel S, Bochnia M, Greef J, Martens S, Steinhöfel O, Zeyner A. Effects of toasting temperature and duration on in vitro ruminal gas production kinetics and post-ruminal crude protein from field pea (Pisum sativum) legume grain silages. Livest Sci 2020. [DOI: 10.1016/j.livsci.2020.103944] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Bachmann M, Kuhnitzsch C, Martens S, Steinhöfel O, Zeyner A. Estimation of gas production and post-ruminal crude protein from native or ensiled Pisum sativum and Vicia faba grains. JOURNAL OF APPLIED ANIMAL RESEARCH 2020. [DOI: 10.1080/09712119.2020.1733581] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
- M. Bachmann
- Institute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany
| | - C. Kuhnitzsch
- Institute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany
- Saxon State Office for Environment, Agriculture and Geology, Köllitsch, Germany
| | - S.D. Martens
- Saxon State Office for Environment, Agriculture and Geology, Köllitsch, Germany
| | - O. Steinhöfel
- Institute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany
- Saxon State Office for Environment, Agriculture and Geology, Köllitsch, Germany
| | - A. Zeyner
- Institute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany
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Jang JC, Zeng Z, Shurson GC, Urriola PE. Effects of Gas Production Recording System and Pig Fecal Inoculum Volume on Kinetics and Variation of In Vitro Fermentation using Corn Distiller's Dried Grains with Solubles and Soybean Hulls. Animals (Basel) 2019; 9:ani9100773. [PMID: 31600978 PMCID: PMC6826484 DOI: 10.3390/ani9100773] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2019] [Revised: 10/02/2019] [Accepted: 10/06/2019] [Indexed: 12/13/2022] Open
Abstract
Simple Summary Various in vitro methodologies have been developed and used to estimate the digestibility of feed ingredients, such as corn distillers dried grains with solubles (cDDGS) and soybean hulls (SBH) which contain high concentrations of dietary fiber. This study evaluated two in vitro gas production recording systems (manual vs. automated) and two initial fecal inoculum volumes (30 vs. 75 mL) on the parameters of in vitro fermentation of cDDGS and SBH. The results showed that the use of 75-mL inoculum volume with 0.5 g substrate tended to reduce the variation of measurements compared to the 30-mL inoculum volume with 0.2 g substrate regardless of the gas production recording system. These findings suggest that using larger inoculum volume with more substrate increases the precision of measurements. Furthermore, the automated system decreases labor for conducting the assay. Abstract An experiment was conducted to investigate the effect of inoculum volume (IV), substrate quantity, and the use of a manual or automated gas production (GP) recording system for in vitro determinations of fermentation of corn distillers dried grains with solubles (cDDGS) and soybean hulls (SBH). A 2 × 2 × 2 factorial arrangement of treatments was used and included the factors of (1) ingredients (cDDGS or SBH), (2) inoculum volume and substrate quantity (IV30 = 0.2 g substrate + 30 mL inoculum or IV75 = 0.5 g substrate + 75 mL inoculum), and (3) GP recording system (MRS = manual recording system or ARS = automated recording system). Feed ingredient samples were pre-treated with pepsin and pancreatin, and the hydrolyzed residues were subsequently incubated with fresh pig feces in a buffered mineral solution. The GP recording was monitored for 72 h, and the kinetics were estimated by fitting data using an exponential model. Compared with SBH, cDDGS yielded less (p < 0.01) maximal gas production (Gf), required more time (p < 0.02) to achieve half gas accumulation (T/2), and had less (p < 0.01) fractional rate of degradation (µ) and in vitro fermentability of dry matter (IVDMF). Using the ARS resulted in less IVDMF (p < 0.01) compared with MRS (79.0% vs. 81.2%, respectively). Interactions were observed between GP recording system and inoculum volume and substrate quantity for Gf (p < 0.04), µ (p < 0.01), and T/2 (p < 0.04) which implies that increasing inoculum volume and substrate quantity resulted in decreased Gf (332 mL/g from IV30 vs. 256 mL/g from IV75), µ (0.05 from IV30 vs. 0.04 from IV75), and T/2 (34 h for IV30 vs. 25 h for IV75) when recorded with ARS but not MRS. However, the recorded cumulative GP at 72 h was not influenced by the inoculum volume nor recording system. The precision of Gf (as measured by the coefficient of variation of Gf) tended to increase for IV30 compared with IV75 (p < 0.10), indicating that using larger inoculum volume and substrate quantity (IV75) reduced within batch variation in GP kinetics. Consequently, both systems showed comparable results in GP kinetics, but considering convenience and achievement of consistency, 75 mL of inoculum volume with 0.5 g substrate is recommended for ARS.
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Affiliation(s)
- Jae-Cheol Jang
- Department of Animal Science, University of Minnesota, St. Paul, MN 55108, USA.
| | - Zhikai Zeng
- Department of Animal Science, University of Minnesota, St. Paul, MN 55108, USA.
| | - Gerald C Shurson
- Department of Animal Science, University of Minnesota, St. Paul, MN 55108, USA.
| | - Pedro E Urriola
- Department of Animal Science, University of Minnesota, St. Paul, MN 55108, USA.
- Department of Veterinary Population Medicine, University of Minnesota, St. Paul, MN 55108, USA.
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Kand D, Bagus Raharjo I, Castro-Montoya J, Dickhoefer U. The effects of rumen nitrogen balance on in vitro rumen fermentation and microbial protein synthesis vary with dietary carbohydrate and nitrogen sources. Anim Feed Sci Technol 2018. [DOI: 10.1016/j.anifeedsci.2018.05.005] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
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Keim JP, Alvarado-Gilis C, Arias RA, Gandarillas M, Cabanilla J. Evaluation of sources of variation on in vitro fermentation kinetics of feedstuffs in a gas production system. Anim Sci J 2017; 88:1547-1555. [PMID: 28557050 DOI: 10.1111/asj.12825] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2016] [Accepted: 03/21/2017] [Indexed: 11/28/2022]
Abstract
The aim of this study was to evaluate the effect of different sources of variation in gas production technique on the in vitro gas production kinetics of feedstuffs. Triplicates of commercial concentrate, grass silage, grass hay and grass pasture were incubated in three experiments: experiment 1 assessed two agitation methods; experiment 2 evaluated different rumen inocula (pooled or different donor cows for each incubation run); and experiment 3 used Goering-Van Soest or Mould buffers for media preparation. Gas production data were fitted into the Michaelis-Menten model and then subjected to analysis of variance. Gas production (GP) at 48 h and asymptote gas production (A) were lower when bottles were continuously under horizontal movement. Time to produce half and 75% of A, and A were affected by rumen inocula, while buffer type affected time to produce half and 25% of A and GP. No interactions between substrates and sources of variation were observed, suggesting that the effects of substrates on GP parameters were not modified. It is concluded that comparison of numerical data from in vitro experiments that follow different protocols must be done carefully. However, the ranking of different substrates is more robust and less affected by the sources of variation.
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Affiliation(s)
- Juan P Keim
- Animal Production Institute, Faculty of Agricultural Sciences, Universidad Austral de Chile, Valdivia, Chile
| | - Christian Alvarado-Gilis
- Animal Production Institute, Faculty of Agricultural Sciences, Universidad Austral de Chile, Valdivia, Chile
| | - Rodrigo A Arias
- Animal Production Institute, Faculty of Agricultural Sciences, Universidad Austral de Chile, Valdivia, Chile
| | - Mónica Gandarillas
- Animal Production Institute, Faculty of Agricultural Sciences, Universidad Austral de Chile, Valdivia, Chile
| | - Jaime Cabanilla
- Graduate School, Faculty of Agricultural Sciences, Universidad Austral de Chile, Valdivia, Chile.,Department of Animal Production, Faculty of Veterinary Medicine & Zootechnics, Universidad Agraria del Ecuador, Guayaquil, Ecuador
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Keim JP, Berthiaume R, Pacheco D, Muetzel S. Comparison of rumen in vitro fermentation of temperate pastures using different batch culture systems. ANIMAL PRODUCTION SCIENCE 2017. [DOI: 10.1071/an15190] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
In vitro batch culture systems are popular because they are relatively inexpensive and allow the screening and testing of large amounts of samples in a short time. Most of the batch culture systems have been designed for the evaluation of gas produced during fermentation of substrates and different designs have been compared between laboratories, but very little work is published where methane production or volatile fatty acid production is compared. The aim of this study was to determine the degree of agreement between two different in vitro batch culture systems, from different laboratories when measuring in vitro fermentation kinetics and end products using pasture samples as substrates. The two systems were a manual and a fully automated pressure-based system. Duplicates of pasture samples were incubated in three consecutive runs. Concordance correlation coefficients between systems and estimates of variance components (pasture, incubation run and random error) for each system were determined for all measured variables. There were poor correlations between systems for most of the variables except for time to produce half of the asymptotic gas production and acetate molar proportion of volatile fatty acids. However, for both systems most of variance was due to pasture sample and then incubation run. The poor agreement between systems might be explained by the different laboratory protocols. Therefore, comparisons of absolute values from different batch culture systems or experiments must be done carefully. Alternatively, more standardisation in terms of sample preparation and incubation procedure may be needed to compare in vitro fermentation products among systems.
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Stewart WC, Whitney TR, Scholljegerdes EJ, Naumann HD, Cherry NM, Muir JP, Lambert BD, Walker JW, Adams RP, Welch KD, Gardner DR, Estell RE. Effects of Juniperus species and stage of maturity on nutritional, in vitro digestibility, and plant secondary compound characteristics. J Anim Sci 2016; 93:4034-47. [PMID: 26440183 DOI: 10.2527/jas.2015-9274] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Rising feed costs and recurring feed shortages necessitate the investigation into alternative and underutilized feed resources. Nutritional characteristics of species are either unknown or limited to leaves and ground material from small stems. Therefore, the objective was to quantify nutritional characteristics, 48-h true IVDMD (tIVDMD), microbial gas production, and secondary compound characteristics of entire woody plant material of 4 species-, , , and -at immature and mature stages of growth. Immature plants had greater CP concentrations and lower NDF concentrations ( < 0.001) than mature plants regardless of species. Mature plants also had greater ( < 0.001) concentrations of ADF compared with immature plants with the exception of . In general, immature , , and had greater ( < 0.02) tIVDMD and total 48-h and asymptotic gas production than mature plants. Immature and plants were more digested (tIVDMD; < 0.001) than immature and , but tIVDMD did not differ in mature plant material across species. Condensed tannins (CT) were greater ( < 0.001) in immature and than mature plants; differences in CT concentrations among immature species were also detected ( < 0.04). Volatile oil yields were similar across maturity and species with 1 exception: immature yielded more ( < 0.02) volatile oil than mature material. Volatile oil composition across species varied and contained a range of 65 to 70 terpene compounds. The dominant terpenes across species were generally greater ( < 0.05) in immature vs. mature plant material with the exception of . Labdane acids were negligible in , , and and greater in ( < 0.001). Ground material from mature juniper species, although inferior in nutritional quality compared with immature plants, is comparable to traditional low-quality roughage ingredients. Given that has been successfully fed in lamb feedlot diets, the similarities of , and suggest that all three species have potential to be effective roughage ingredients.
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Maccarana L, Cattani M, Tagliapietra F, Schiavon S, Bailoni L, Mantovani R. Methodological factors affecting gas and methane production during in vitro rumen fermentation evaluated by meta-analysis approach. J Anim Sci Biotechnol 2016; 7:35. [PMID: 27307988 PMCID: PMC4908760 DOI: 10.1186/s40104-016-0094-8] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2015] [Accepted: 05/25/2016] [Indexed: 11/10/2022] Open
Abstract
Effects of some methodological factors on in vitro measures of gas production (GP, mL/g DM), CH4 production (mL/g DM) and proportion (% CH4 on total GP) were investigated by meta-analysis. These factors were considered: pressure in the GP equipment (0 = constant; 1 = increasing), incubation time (0 = 24; 1 = ≥ 48 h), time of rumen fluid collection (0 = before feeding; 1 = after feeding of donor animals), donor species of rumen fluid (0 = sheep; 1 = bovine), presence of N in the buffer solution (0 = presence; 1 = absence), and ratio between amount of buffered rumen fluid and feed sample (BRF/FS; 0 = ≤ 130 mL/g DM; 1 = 130–140 mL/g DM; 2 = ≥ 140 mL/g DM). The NDF content of feed sample incubated (NDF) was considered as a continuous variable. From an initial database of 105 papers, 58 were discarded because one of the above-mentioned factors was not stated. After discarding 17 papers, the final dataset comprised 30 papers (339 observations). A preliminary mixed model analysis was carried out on experimental data considering the study as random factor. Variables adjusted for study effect were analyzed using a backward stepwise analysis including the above-mentioned variables. The analysis showed that the extension of incubation time and reduction of NDF increased GP and CH4 values. Values of GP and CH4 also increased when rumen fluid was collected after feeding compared to before feeding (+26.4 and +9.0 mL/g DM, for GP and CH4), from bovine compared to sheep (+32.8 and +5.2 mL/g DM, for GP and CH4), and when the buffer solution did not contain N (+24.7 and +6.7 mL/g DM for GP and CH4). The increase of BRF/FS ratio enhanced GP and CH4 production (+7.7 and +3.3 mL/g DM per each class of increase, respectively). In vitro techniques for measuring GP and CH4 production are mostly used as screening methods, thus a full standardization of such techniques is not feasible. However, a greater harmonization of analytical procedures (i.e., a reduction in the number of available protocols) would be useful to facilitate comparison between results of different experiments.
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Affiliation(s)
- Laura Maccarana
- Department of Comparative Biomedicine and Food Science (BCA), University of Padova, Viale dell'Università 16, 35020 Legnaro (PD), Italy
| | - Mirko Cattani
- Department of Comparative Biomedicine and Food Science (BCA), University of Padova, Viale dell'Università 16, 35020 Legnaro (PD), Italy
| | - Franco Tagliapietra
- Department of Agronomy, Food, Natural resources, Animals and Environment (DAFNAE), University of Padova, Viale dell'Università 16, 35020 Legnaro (PD), Italy
| | - Stefano Schiavon
- Department of Agronomy, Food, Natural resources, Animals and Environment (DAFNAE), University of Padova, Viale dell'Università 16, 35020 Legnaro (PD), Italy
| | - Lucia Bailoni
- Department of Comparative Biomedicine and Food Science (BCA), University of Padova, Viale dell'Università 16, 35020 Legnaro (PD), Italy
| | - Roberto Mantovani
- Department of Agronomy, Food, Natural resources, Animals and Environment (DAFNAE), University of Padova, Viale dell'Università 16, 35020 Legnaro (PD), Italy
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Yáñez-Ruiz D, Bannink A, Dijkstra J, Kebreab E, Morgavi D, O’Kiely P, Reynolds C, Schwarm A, Shingfield K, Yu Z, Hristov A. Design, implementation and interpretation of in vitro batch culture experiments to assess enteric methane mitigation in ruminants—a review. Anim Feed Sci Technol 2016. [DOI: 10.1016/j.anifeedsci.2016.03.016] [Citation(s) in RCA: 77] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
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Hannah MC, Moate PJ, Alvarez Hess PS, Russo VM, Jacobs JL, Eckard RJ. Mathematical formulae for accurate estimation of in vitro CH4 production from vented bottles. ANIMAL PRODUCTION SCIENCE 2016. [DOI: 10.1071/an15577] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
A widely used method for the in vitro measurement of fermentation parameters, total gas and methane (CH4) production (mL/g) from feed samples employs AnkomRF Technology with vented bottles, initially flushed with carbon dioxide (CO2). The volumes of gas accumulated between ventings, and the volumes vented, are calculated from the headspace pressure data. By using these data, it is possible to infer mathematically the quantity of CH4 produced, given just a single measurement of the CH4 mixing ratio measured in the headspace at the termination of fermentation. However, this calculation requires an additional assumption. Two possibilities for this are considered. We present mathematical formulae arising from each, and describe their sensitivity to violations of their respective assumptions. Also considered is a formula based on using N2 instead of CO2 as the flushing gas. It appears that, in practice, all three formulae are suitable for estimating CH4 production, with errors less than 3%.
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Ritz C, Baty F, Streibig JC, Gerhard D. Dose-Response Analysis Using R. PLoS One 2015; 10:e0146021. [PMID: 26717316 PMCID: PMC4696819 DOI: 10.1371/journal.pone.0146021] [Citation(s) in RCA: 1528] [Impact Index Per Article: 169.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2015] [Accepted: 12/11/2015] [Indexed: 11/18/2022] Open
Abstract
Dose-response analysis can be carried out using multi-purpose commercial statistical software, but except for a few special cases the analysis easily becomes cumbersome as relevant, non-standard output requires manual programming. The extension package drc for the statistical environment R provides a flexible and versatile infrastructure for dose-response analyses in general. The present version of the package, reflecting extensions and modifications over the last decade, provides a user-friendly interface to specify the model assumptions about the dose-response relationship and comes with a number of extractors for summarizing fitted models and carrying out inference on derived parameters. The aim of the present paper is to provide an overview of state-of-the-art dose-response analysis, both in terms of general concepts that have evolved and matured over the years and by means of concrete examples.
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Affiliation(s)
- Christian Ritz
- Department of Nutrition, Exercise and Sports, University of Copenhagen, Rolighedsvej 26, DK-1958 Frederiksberg C, Denmark
- * E-mail:
| | - Florent Baty
- Pneumology, Kantonsspital St. Gallen, Rorschacher Strasse 95, CH-9007 St. Gallen, Switzerland
| | - Jens C. Streibig
- Department of Plant and Environmental Sciences, University of Copenhagen, Højbakkegård Allé 13, DK-2630 Taastrup, Denmark
| | - Daniel Gerhard
- School of Mathematics and Statistics, University of Canterbury, Private Bag 4800, Christchurch 8140, New Zealand
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Cattani M, Tagliapietra F, Maccarana L, Hansen HH, Bailoni L, Schiavon S. Technical note: In vitro total gas and methane production measurements from closed or vented rumen batch culture systems. J Dairy Sci 2014; 97:1736-41. [PMID: 24393177 DOI: 10.3168/jds.2013-7462] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2013] [Accepted: 11/10/2013] [Indexed: 11/19/2022]
Abstract
This study compared measured gas production (GP) and computed CH4 production values provided by closed or vented bottles connected to gas collection bags. Two forages and 3 concentrates were incubated. Two incubations were conducted, where the 5 feeds were tested in 3 replicates in closed or vented bottles, plus 4 blanks, for a total of 64 bottles. Half of the bottles were not vented, and the others were vented at a fixed pressure (6.8 kPa) and gas was collected into one gas collection bag connected to each bottle. Each bottle (317 mL) was filled with 0.4000 ± 0.0010 g of feed sample and 60 mL of buffered rumen fluid (headspace volume = 257 mL) and incubated at 39.0°C for 24 h. At 24 h, gas samples were collected from the headspace of closed bottles or from headspace and bags of vented bottles and analyzed for CH4 concentration. Volumes of GP at 24 h were corrected for the gas dissolved in the fermentation fluid, according to Henry's law of gas solubility. Methane concentration (mL/100mL of GP) was measured and CH4 production (mL/g of incubated DM) was computed using corrected or uncorrected GP values. Data were analyzed for the effect of venting technique (T), feed (F), interaction between venting technique and feed (T × F), and incubation run as a random factor. Closed bottles provided lower uncorrected GP (-18%) compared with vented bottles, especially for concentrates. Correction for dissolved gas reduced but did not remove differences between techniques, and closed bottles (+25 mL of gas/g of incubated DM) had a greater magnitude of variation than did vented bottles (+1 mL of gas/g of incubated DM). Feeds differed in uncorrected and corrected GP, but the ranking was the same for the 2 techniques. The T × F interaction influenced uncorrected GP values, but this effect disappeared after correction. Closed bottles provided uncorrected CH4 concentrations 23% greater than that of vented bottles. Correction reduced but did not remove this difference. Methane concentration was influenced by feed but not by the T × F interaction. Corrected CH4 production was influenced by feed, but not by venting technique or the T × F interaction. Closed bottles provide good measurements of CH4 production but not of GP. Venting of bottles at low pressure permits a reliable evaluation of total GP and CH4 production.
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Affiliation(s)
- M Cattani
- Department of Comparative Biomedicine and Food Science (BCA), University of Padova, Viale dell'Università 16, 35020, Legnaro (PD), Italy
| | - F Tagliapietra
- Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), University of Padova, Viale dell'Università 16, 35020, Legnaro (PD), Italy
| | - L Maccarana
- Department of Comparative Biomedicine and Food Science (BCA), University of Padova, Viale dell'Università 16, 35020, Legnaro (PD), Italy
| | - H H Hansen
- Department of Large Animal Sciences, University of Copenhagen, Grønnegårdsvej 2, 1870 Frederiksberg, Denmark
| | - L Bailoni
- Department of Comparative Biomedicine and Food Science (BCA), University of Padova, Viale dell'Università 16, 35020, Legnaro (PD), Italy.
| | - S Schiavon
- Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE), University of Padova, Viale dell'Università 16, 35020, Legnaro (PD), Italy
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In vitro–in vivo study on the effects of plant compounds on rumen fermentation, microbial abundances and methane emissions in goats. Animal 2013; 7:1925-34. [DOI: 10.1017/s1751731113001699] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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