1
|
Tian Y, Sang W, Liu P, Liu J, Xiang J, Cui F, Xu H, Han X, Nie Y, Kong D, Li W, Mu P. Genome-wide Association Study for Starch Pasting Properties in Chinese Spring Wheat. Front Genet 2022; 13:830644. [PMID: 35401682 PMCID: PMC8990798 DOI: 10.3389/fgene.2022.830644] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Accepted: 02/25/2022] [Indexed: 11/13/2022] Open
Abstract
In order to understand the genetic basis of starch pasting viscosity characteristics of Chinese spring wheat, we assessed the genetic variation of RVA parameters determined by the Rapid Visco Analyser in a panel of 192 Chinese spring wheat accessions grown in Er'shi, Shihezi and Zhaosu during 2012 and 2013 cropping seasons. A genome-wide association study with 47,362 single nucleotide polymorphism (SNP) markers was conducted to detect marker-trait associations using mixed linear model. Phenotypic variations of RVA parameters ranged from 1.6 to 30.7% and broad-sense heritabilities ranged from 0.62 to 0.91. Forty-one SNP markers at 25 loci were significantly associated with seven RVA traits in at least two environments; among these, 20 SNPs were located in coding sequences (CDS) of 18 annotation genes, which can lead to discovering novel genes underpinning starch gelatinization in spring wheat. Haplotype analysis revealed one block for breakdown (BD) on chromosome 3B and two blocks for pasting temperature (T) on chromosome 7B. Cultivars with superior haplotypes at these loci showed better starch pasting viscosity than the average of all cultivars surveyed. The identified loci and associated markers provide valuable sources for future functional characterization and genetic improvement of starch quality in wheat.
Collapse
Affiliation(s)
- Yousheng Tian
- The Key Laboratory of the Oasis Ecological Agriculture, College of Agriculture, Shihezi University, Shihezi, China
- Department of Administrative Management, Xinjiang Academy of Agri-reclamation Sciences, Shihezi, China
| | - Wei Sang
- Institute of Crop Science, Xinjiang Academy of Agri-reclamation Sciences/Key Lab of Xinjiang Production and Construction Corps for Cereal Quality Research and Genetic Improvement, Shihezi, China
| | - Pengpeng Liu
- Institute of Crop Science, Xinjiang Academy of Agri-reclamation Sciences/Key Lab of Xinjiang Production and Construction Corps for Cereal Quality Research and Genetic Improvement, Shihezi, China
| | - Jindong Liu
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Jishan Xiang
- Institute of Crop Science, Xinjiang Academy of Agri-reclamation Sciences/Key Lab of Xinjiang Production and Construction Corps for Cereal Quality Research and Genetic Improvement, Shihezi, China
| | - Fengjuan Cui
- Institute of Crop Science, Xinjiang Academy of Agri-reclamation Sciences/Key Lab of Xinjiang Production and Construction Corps for Cereal Quality Research and Genetic Improvement, Shihezi, China
| | - Hongjun Xu
- Institute of Crop Science, Xinjiang Academy of Agri-reclamation Sciences/Key Lab of Xinjiang Production and Construction Corps for Cereal Quality Research and Genetic Improvement, Shihezi, China
| | - Xinnian Han
- Institute of Crop Science, Xinjiang Academy of Agri-reclamation Sciences/Key Lab of Xinjiang Production and Construction Corps for Cereal Quality Research and Genetic Improvement, Shihezi, China
| | - Yingbin Nie
- Institute of Crop Science, Xinjiang Academy of Agri-reclamation Sciences/Key Lab of Xinjiang Production and Construction Corps for Cereal Quality Research and Genetic Improvement, Shihezi, China
| | - Dezhen Kong
- Institute of Crop Science, Xinjiang Academy of Agri-reclamation Sciences/Key Lab of Xinjiang Production and Construction Corps for Cereal Quality Research and Genetic Improvement, Shihezi, China
| | - Weihua Li
- The Key Laboratory of the Oasis Ecological Agriculture, College of Agriculture, Shihezi University, Shihezi, China
| | - Peiyuan Mu
- Institute of Crop Science, Xinjiang Academy of Agri-reclamation Sciences/Key Lab of Xinjiang Production and Construction Corps for Cereal Quality Research and Genetic Improvement, Shihezi, China
| |
Collapse
|
2
|
Xia J, Zhu D, Wang R, Cui Y, Yan Y. Crop resistant starch and genetic improvement: a review of recent advances. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2018; 131:2495-2511. [PMID: 30374526 DOI: 10.1007/s00122-018-3221-4] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2018] [Accepted: 10/24/2018] [Indexed: 05/12/2023]
Abstract
Resistant starch (RS), as a healthy dietary fiber, meets with great human favor along with the rapid development and improvement of global living standards. RS shows direct effects in reducing postprandial blood glucose levels, serum cholesterol levels and glycemic index. Therefore, RS plays an important role in preventing and improving non-communicable diseases, such as obesity, diabetes, colon cancer, cardiovascular diseases and chronic kidney disease. In addition, RS leads to its potential applied value in the development of high-quality foodstuffs, such as bread, noodles and dumplings. This paper reviews the recent advances in RS research, focusing mainly on RS classification and measurement, formation, quantitative trait locus mapping, genome-wide association studies, molecular marker development and genetic improvement through induced mutations, plant breeding combined with marker-assisted selection and genetic transformation. Challenges and perspectives on further RS research are also discussed.
Collapse
Affiliation(s)
- Jian Xia
- Laboratory of Molecular Genetics and Proteomics, College of Life Science, Capital Normal University, 100048, Beijing, China
| | - Dong Zhu
- Laboratory of Molecular Genetics and Proteomics, College of Life Science, Capital Normal University, 100048, Beijing, China
| | - Ruomei Wang
- Laboratory of Molecular Genetics and Proteomics, College of Life Science, Capital Normal University, 100048, Beijing, China
| | - Yue Cui
- Laboratory of Molecular Genetics and Proteomics, College of Life Science, Capital Normal University, 100048, Beijing, China
| | - Yueming Yan
- Laboratory of Molecular Genetics and Proteomics, College of Life Science, Capital Normal University, 100048, Beijing, China.
| |
Collapse
|
3
|
Liu N, Zhang Z, Xue Y, Meng S, Huang Y, Li W, Huang J, Tang J. Identification of Quantitative Trait Loci and Candidate Genes for Maize Starch Granule Size through Association Mapping. Sci Rep 2018; 8:14236. [PMID: 30250035 PMCID: PMC6155146 DOI: 10.1038/s41598-018-31863-y] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2017] [Accepted: 08/28/2018] [Indexed: 12/31/2022] Open
Abstract
Starch is an important nutrient component of maize kernels, and starch granule size largely determines kernel waxiness, viscosity, and other physiochemical and processing properties. To explore the genetic basis of maize starch granule size, 266 tropical, subtropical, and temperate inbred lines were subjected to genome-wide association analyses with an array of 56,110 random single nucleotide polymorphisms (SNPs). In the present panel, the kernel starch granule size ranged from 7–15.8 µm long and 6.8–14.3 µm wide. Fourteen significant SNPs were identified as being associated with the length of starch granules and 9 with their width. One linkage disequilibrium block flanking both sides of a significant SNP was defined as a quantitative trait locus (QTL) interval, and seven QTLs were mapped for both granule length and width. A total of 79 and 88 candidate genes associated with starch length and width, respectively, were identified as being distributed on QTL genomic regions. Among these candidate genes, six with high scores were predicted to be associated with maize starch granule size. A candidate gene association analysis identified significant SNPs within genes GRMZM2G419655 and GRMZM2G511067, which could be used as functional markers in screening starch granule size for different commercial uses.
Collapse
Affiliation(s)
- Na Liu
- Key Laboratory of Wheat and Maize Crops Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, Zhengzhou, 450002, China.,College of Biological engineering, Henan University of Technology, Zhengzhou, 450001, China
| | - Zhanhui Zhang
- Key Laboratory of Wheat and Maize Crops Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, Zhengzhou, 450002, China
| | - Yadong Xue
- Key Laboratory of Wheat and Maize Crops Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, Zhengzhou, 450002, China
| | - Shujun Meng
- Key Laboratory of Wheat and Maize Crops Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, Zhengzhou, 450002, China
| | - Yubi Huang
- College of Agronomy, Sichuan Agricultural University, Wenjiang, 611130, China
| | - Weihua Li
- Key Laboratory of Wheat and Maize Crops Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, Zhengzhou, 450002, China
| | - Jihong Huang
- College of Biological engineering, Henan University of Technology, Zhengzhou, 450001, China.
| | - Jihua Tang
- Key Laboratory of Wheat and Maize Crops Science, Collaborative Innovation Center of Henan Grain Crops, College of Agronomy, Henan Agricultural University, Zhengzhou, 450002, China. .,Hubei Collaborative Innovation Center for Grain Industry, Yangtze University, Jingzhou, 434025, China.
| |
Collapse
|
4
|
Li J, Rasheed A, Guo Q, Dong Y, Liu J, Xia X, Zhang Y, He Z. Genome-wide association mapping of starch granule size distribution in common wheat. J Cereal Sci 2017. [DOI: 10.1016/j.jcs.2017.08.016] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
|
5
|
Holmes CP, Casey J, Cook DJ. Mashing with unmalted sorghum using a novel low temperature enzyme system: Impacts of sorghum grain composition and microstructure. Food Chem 2017; 221:324-334. [DOI: 10.1016/j.foodchem.2016.10.083] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2016] [Revised: 10/17/2016] [Accepted: 10/19/2016] [Indexed: 11/15/2022]
|
6
|
Wang FF, Liu TT, Li QF, An YL, Xie CP, Sun X, Liu K, Deng ZY, Tian JC, Chen JS. QTL mapping of the pasting properties of wheat flour treated by papain digestion. STARCH-STARKE 2016. [DOI: 10.1002/star.201600077] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Fang-fang Wang
- State Key Laboratory of Crop Biology; Group of Wheat Quality Breeding; College of Agronomy; Shandong Agricultural University; Shandong P. R. China
| | - Tong-tong Liu
- State Key Laboratory of Crop Biology; Group of Wheat Quality Breeding; College of Agronomy; Shandong Agricultural University; Shandong P. R. China
| | - Qing-fang Li
- State Key Laboratory of Crop Biology; Group of Wheat Quality Breeding; College of Agronomy; Shandong Agricultural University; Shandong P. R. China
| | - Yu-ling An
- State Key Laboratory of Crop Biology; Group of Wheat Quality Breeding; College of Agronomy; Shandong Agricultural University; Shandong P. R. China
| | - Chu-peng Xie
- State Key Laboratory of Crop Biology; Group of Wheat Quality Breeding; College of Agronomy; Shandong Agricultural University; Shandong P. R. China
| | - Xiaoxiao Sun
- State Key Laboratory of Crop Biology; Group of Wheat Quality Breeding; College of Agronomy; Shandong Agricultural University; Shandong P. R. China
| | - Kai Liu
- State Key Laboratory of Crop Biology; Group of Wheat Quality Breeding; College of Agronomy; Shandong Agricultural University; Shandong P. R. China
| | - Zhi-ying Deng
- State Key Laboratory of Crop Biology; Group of Wheat Quality Breeding; College of Agronomy; Shandong Agricultural University; Shandong P. R. China
| | - Ji-chun Tian
- State Key Laboratory of Crop Biology; Group of Wheat Quality Breeding; College of Agronomy; Shandong Agricultural University; Shandong P. R. China
| | - Jian-sheng Chen
- State Key Laboratory of Crop Biology; Group of Wheat Quality Breeding; College of Agronomy; Shandong Agricultural University; Shandong P. R. China
| |
Collapse
|
7
|
Chen G, Zhu J, Zhou J, Subburaj S, Zhang M, Han C, Hao P, Li X, Yan Y. Dynamic development of starch granules and the regulation of starch biosynthesis in Brachypodium distachyon: comparison with common wheat and Aegilops peregrina. BMC PLANT BIOLOGY 2014; 14:198. [PMID: 25095703 PMCID: PMC4256708 DOI: 10.1186/s12870-014-0198-2] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/19/2014] [Accepted: 07/15/2014] [Indexed: 05/06/2023]
Abstract
BACKGROUND Thorough understanding of seed starch biosynthesis and accumulation mechanisms is of great importance for agriculture and crop improvement strategies. We conducted the first comprehensive study of the dynamic development of starch granules and the regulation of starch biosynthesis in Brachypodium distachyon and compared the findings with those reported for common wheat (Chinese Spring, CS) and Aegilops peregrina. RESULTS Only B-granules were identified in Brachypodium Bd21, and the shape variation and development of starch granules were similar in the B-granules of CS and Bd21. Phylogenetic analysis showed that most of the Bd21 starch synthesis-related genes were more similar to those in wheat than in rice. Early expression of key genes in Bd21 starch biosynthesis mediate starch synthesis in the pericarp; intermediate-stage expression increases the number and size of starch granules. In contrast, these enzymes in CS and Ae. peregrina were mostly expressed at intermediate stages, driving production of new B-granules and increasing the granule size, respectively. Immunogold labeling showed that granule-bound starch synthase (GBSSI; related to amylose synthesis) was mainly present in starch granules: at lower levels in the B-granules of Bd21 than in CS. Furthermore, GBSSI was phosphorylated at threonine 183 and tyrosine 185 in the starch synthase catalytic domain in CS and Ae. peregrina, but neither site was phosphorylated in Bd21, suggesting GBSSI phosphorylation could improve amylose biosynthesis. CONCLUSIONS Bd21 contains only B-granules, and the expression of key genes in the three studied genera is consistent with the dynamic development of starch granules. GBSSI is present in greater amounts in the B-granules of CS than in Bd21; two phosphorylation sites (Thr183 and Tyr185) were found in Triticum and Aegilops; these sites were not phosphorylated in Bd21. GBSSI phosphorylation may reflect its importance in amylose synthesis.
Collapse
Affiliation(s)
- Guanxing Chen
- College of Life Science, Capital Normal University, 100048 Beijing, China
| | - Jiantang Zhu
- College of Life Science, Capital Normal University, 100048 Beijing, China
| | - Jianwen Zhou
- College of Life Science, Capital Normal University, 100048 Beijing, China
| | | | - Ming Zhang
- College of Life Science, Capital Normal University, 100048 Beijing, China
| | - Caixia Han
- College of Life Science, Capital Normal University, 100048 Beijing, China
| | - Pengchao Hao
- College of Life Science, Capital Normal University, 100048 Beijing, China
| | - Xiaohui Li
- College of Life Science, Capital Normal University, 100048 Beijing, China
| | - Yueming Yan
- College of Life Science, Capital Normal University, 100048 Beijing, China
| |
Collapse
|
8
|
Jaiswal S, Båga M, Ahuja G, Rossnagel BG, Chibbar RN. Development of barley (Hordeum vulgare L.) lines with altered starch granule size distribution. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2014; 62:2289-2296. [PMID: 24483248 DOI: 10.1021/jf405424x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Microscope analysis of starches prepared from 139 barley genotypes identified a Japanese genotype, Kinai Kyoshinkai-2 (KK-2), with altered starch granule size distribution. Compared to normal barley starch, KK-2 produced consistently higher volumes of starch granules with 5-15 μm diameter and reduced volumes of starch granules with >15 μm diameter when grown in different environments. A cross between KK-2 and normal starch cultivar CDC Kendall was made and led to the production of 154 F5 lines with alterations to the normal 7:3:1 distribution for A-:B-:C-type starch granule volumes. Three F5 lines showed unimodal starch granule size distribution due to apparent lack of very small (<5.0 μm diameter) C-type starch granules, but the phenotype was accompanied by reduced grain weight and total starch concentration. Five F5 lines produced a significantly larger population of large (>15 μm diameter) A-type starch granules as compared to normal starch and showed on average a 10:4:1 distribution for A-:B-:C-type starch granule volumes. The unusual starch phenotypes displayed by the F5 lines confirm starch granule size distribution in barley can be genetically altered.
Collapse
Affiliation(s)
- Sarita Jaiswal
- Department of Plant Sciences, College of Agriculture and Bioresources, University of Saskatchewan , 51 Campus Drive, Saskatoon, Saskatchewan S7N5A8, Canada
| | | | | | | | | |
Collapse
|
9
|
Howard T, Rejab NA, Griffiths S, Leigh F, Leverington-Waite M, Simmonds J, Uauy C, Trafford K. Identification of a major QTL controlling the content of B-type starch granules in Aegilops. JOURNAL OF EXPERIMENTAL BOTANY 2011; 62:2217-28. [PMID: 21227932 PMCID: PMC3060699 DOI: 10.1093/jxb/erq423] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2010] [Revised: 11/25/2010] [Accepted: 11/26/2010] [Indexed: 05/19/2023]
Abstract
Starch within the endosperm of most species of the Triticeae has a unique bimodal granule morphology comprising large lenticular A-type granules and smaller near-spherical B-type granules. However, a few wild wheat species (Aegilops) are known to lack B-granules. Ae. peregrina and a synthetic tetraploid Aegilops with the same genome composition (SU) were found to differ in B-granule number. The synthetic tetraploid had normal A- and B-type starch granules whilst Ae. peregrina had only A-granules because the B-granules failed to initiate. A population segregating for B-granule number was generated by crossing these two accessions and was used to study the genetic basis of B-granule initiation. A combination of Bulked Segregant Analysis and QTL mapping identified a major QTL located on the short arm of chromosome 4S that accounted for 44.4% of the phenotypic variation. The lack of B-granules in polyploid Aegilops with diverse genomes suggests that the B-granule locus has been lost several times independently during the evolution of the Triticeae. It is proposed that the B-granule locus is susceptible to silencing during polyploidization and a model is presented to explain the observed data based on the assumption that the initiation of B-granules is controlled by a single major locus per haploid genome.
Collapse
Affiliation(s)
- Thomas Howard
- John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK
| | | | - Simon Griffiths
- John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK
| | - Fiona Leigh
- National Institute of Agricultural Botany, Huntingdon Road, Cambridge CB3 0LE, UK
| | | | - James Simmonds
- John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK
| | - Cristobal Uauy
- John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK
- National Institute of Agricultural Botany, Huntingdon Road, Cambridge CB3 0LE, UK
| | - Kay Trafford
- John Innes Centre, Norwich Research Park, Norwich NR4 7UH, UK
- To whom correspondence should be addressed: E-mail:
| |
Collapse
|
10
|
Leon E, Piston F, Aouni R, Shewry PR, Rosell CM, Martin A, Barro F. Pasting properties of transgenic lines of a commercial bread wheat expressing combinations of HMW glutenin subunit genes. J Cereal Sci 2010. [DOI: 10.1016/j.jcs.2010.02.002] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
|
11
|
|
12
|
Mares D, Mrva K. Late-maturity α-amylase: Low falling number in wheat in the absence of preharvest sprouting. J Cereal Sci 2008. [DOI: 10.1016/j.jcs.2007.01.005] [Citation(s) in RCA: 72] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
|
13
|
Graybosch RA, Souza E, Berzonsky W, Baenziger P, Chung O. Functional properties of waxy wheat flours: genotypic and environmental effects. J Cereal Sci 2003. [DOI: 10.1016/s0733-5210(02)00139-x] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
|