Relationship between energy intake and growth performance and body composition in pigs selected for low backfat thickness

Genetic selection of pigs over recent decades has sought to reduce carcass fat content to meet consumer demands for lean meat in many countries (e.g.: Australia). Due to the impacts of genetic changes, it is unknown whether the carcass fat measures are still responsive to energy intake. Thus, the present experiment aimed to quantify the relationship between tissue composition and dietary energy intake in finisher pigs selected for low carcass backfat. Intact male and female pigs (n=56 for each sex; PrimegroGenetics, Corowa, NSW, Australia) were fed seven different amounts of an amino acid adequate wheat-based diet containing 14.3 MJ digestible energy (DE)/kg to provide the following daily DE intakes- 25.8, 29.0, 32.6, 35.3, 38.5, 41.5 and 44.2 (ad libitum) MJ DE/d for males, and 25.8, 28.9, 32.0, 35.6, 38.3, 40.9 and 44.5 (ad libitum) MJ DE/d for females between 60 kg and 108 kg live weight. Body composition of anaesthetised pigs was measured using the Dual Energy X-ray Absorptiometry (DXA) method when individual pigs reached 108 kg, and protein, fat and ash deposition rates were calculated. Pigs were slaughtered on the 2nd day post-DXA scan for carcass backfat measurement. The results showed that the carcass backfat thickness (standardized at 83.7 kg carcass) increased by 0.125 mm for every MJ increase in daily DE intake in male pigs (P = 0.004; R2 = 0.130), but carcass backfat of female pigs (standardized at 85.1 kg carcass) was not responsive to daily DE intake. Whole-body fat composition and fat deposition rate increased linearly (both P < 0.01) in male pigs but quadratically (both P < 0.01) in female pigs in response to DE intake. Every MJ increase of daily DE intake increased the rate of daily protein deposition by 3.8 g in intact male pigs (P < 0.001; R2 = 0.781) and by 2.5 g in female pigs (P < 0.001; R2 = 0.643). In conclusion, the selection for low backfat thickness over the last two decades has altered the response of fat deposition and backfat thickness to energy intake, particularly in female pigs. Despite this change, the linear relationship between DE intake and protein deposition rate was maintained in these modern genetics.

Association of residual feed intake with growth performance, carcass traits, meat quality, and blood variables in native chickens

Improving feed efficiency is a primary goal in poultry breeding strategies. Residual feed intake (RFI) in chickens typically calculated during the growing period is a measure of feed efficiency that is independent of the level of production. The objective of this study was to evaluate phenotypic correlations of growth performance, carcass traits, meat quality, and blood variables with RFI in growing native chickens. A total of 1,008 chickens were selected for the experiment to derive RFI. After the RFI measurement period of 42 d, 25 chickens with low RFI values, 25 chickens with medium RFI values, and 25 chickens with high RFI values were selected. The RFI was significantly positively correlated with feed conversion ratio and average daily feed intake, while it was not significantly correlated with initial body weight (BW), final BW, average daily body weight gain, and metabolic BW0.75. The abdominal fat weight and yield of high RFI group were significantly greater than those of medium and low RFI groups, and the abdominal fat yield was significantly positively correlated with RFI. Moreover, the plasma insulin-like growth factor 1 (IGF-1) content of low RFI group was significantly greater than those of high and medium RFI groups. The plasma concentrations of adrenocorticotropic hormone, triiodothyronine (T3), and cortisol of high RFI birds were significantly greater than that of low RFI birds. RFI was significantly positively correlated with plasma concentrations of T3 and cortisol, while it was significantly negatively correlated with plasma concentration of IGF-1. In addition, the serum levels of glucose and triglyceride of high RFI birds were significantly lower than that of low RFI birds. The serum low-density lipoprotein cholesterol (LDL-C) content of high RFI group was significantly greater than that of medium and low RFI groups, and it was significantly positively correlated with RFI. Our data suggested that selection of chickens with low RFI values may be beneficial to reduce fat deposition in native chickens without affecting the meat quality. Circulating IGF-1, T3, cortisol, and LDL-C concentrations can be used as indirect selection indicators of feed efficiency in native chickens. The effect of IGF-1, T3, cortisol, and LDL-C on feed efficiency of native chickens should be carefully examined and validated in future breeding programs.

What does the ‘closed herd’ really mean for Australian breeding companies and their customers?

The perception that the genetic background of the Australian pig population is limiting for genetic improvement of commercial pigs in Australia is considered in the context of well established theory combined with practical evidence. The diversity of pig breeds used in modern commercial pig-breeding programs is diminished worldwide relative to all the pig breeds available. Australia is no different in this respect. The use of predominantly three main breeds (Large White, Landrace, Duroc) and synthetic lines, with contributions from other minor breeds to form the basis of a cross-breeding system for commercial pig production is well established internationally. The Australian concern of relatively small founder populations is potentially of relevance, from a theoretical perspective, for (1) the prevalence of defects or the presence of desirable alleles, and (2) the loss of genetic variation or increase in inbreeding depression resulting from increased inbreeding in closed nucleus lines, potentially reducing response to selection. However, rates of response achieved in Australian herds are generally commensurate with the performance recording and selection emphasis applied, and do not appear to be unduly restricted. Moreover, favourable alleles present in unrepresented breeds are frequently present in the three major breeds elsewhere, and therefore would be expected to be present within the Australian populations. Wider testing would provide confirmation of this. Comparison of estimates of effective population size of Australian populations with experimental selection lines overseas (e.g. INRA) or other intensely selected species (e.g. Holstein cattle) suggest adequate genetic diversity to achieve ongoing genetic improvement in the Australian pig industry. However, fitness traits should be included in breeding goals. What remains to be seen is whether novel phenotypes or genotypes are required to meet future challenges, which might be imposed by changes in the environment (e.g. climate change, disease) or market needs. Given probable overlap in genetic merit across Australian and foreign populations for unselected attributes, we suggest that sufficient genetic resources are already present in Australian herds to continue commercial progress within existing Australian populations that have adapted to Australian conditions.

Selection for productivity and robustness traits in pigs

Pig breeding programs worldwide continue to focus on both productivity and robustness. This selection emphasis has to be accompanied by provision of better-quality environments to pigs to improve performance and to enhance health and welfare of pigs. Definition of broader breeding objectives that include robustness traits in addition to production traits is the first step in the development of selection strategies for productivity and robustness. An approach has been presented which facilitates extension of breeding objectives. Post-weaning survival, maternal genetic effects for growth as an indicator of health status and sow mature weight are examples of robustness traits. Further, breeding objectives should be defined for commercial environments and selection indexes should account for genotype by environment interactions (GxE). Average performances of groups of pigs have been used to quantify the additive effects of multiple environmental factors on performance of pigs. For growth, GxE existed when environments differed by 60 g/day between groups of pigs. This environmental variation was observed even on well managed farms. Selection for improved health of pigs should focus on disease resistance to indirectly reduce pathogen loads on farms and on disease resilience to improve the ability of pigs to cope with infection challenges. Traits defining disease resilience may be based on performance and immune measures, disease incidence or survival rates of pigs. Residual feed intake is a trait that quantifies feed efficiency. The responses of divergent selection lines for residual feed intake to various environmental challenges were often similar or even favourable for the more efficient, low residual feed intake line. These somewhat unexpected results highlight the need to gain a better understanding of the metabolic differences between more or less productive pigs. These physiological differences lead to interactions between the genetic potential of pigs for productivity and robustness and the prevalence of specific environmental conditions.

Metabolic changes and tissue responses to selection on residual feed intake in growing pigs

Previous selection experiments using residual feed intake (RFI) to select pigs with a high feed efficiency have reported that a low RFI was associated with a reduced body fat content and a greater muscle glycogen content. In the current study, growing Large White female piglets from 2 lines divergently selected for RFI were used to determine the changes in energy and protein metabolisms in key tissues and their cross talks in response to selection. Pigs of low RFI (RFI(-); n = 26) or high RFI (RFI(+); n = 36) selection lines were offered free access to feed during postweaning and growing periods. Pigs of each line were then slaughtered at 19 kg (n = 8 per line) or 115 kg BW (n = 14 to 18 per line). A third group of pigs of the RFI(+) line was offered feed at the same level per metabolic BW (BW0.60) as RFI- pigs (group RFI+R, n = 14). Regardless of the growth period considered, G:F was less in RFI(+) pigs than in RFI(-) pigs. At 19 kg BW, RFI(+) and RFI(-) pigs had a similar body composition and tissue lipid content. The fractional rate of protein synthesis and proteasome activity were decreased (P < 0.090) in the livers of RFI(+) pigs compared with RFI(-) pigs whereas activities of energy catabolic enzymes did not differ in the liver and LM samples. Plasma insulin was conversely greater (P = 0.049) in RFI(+) pigs at this stage. At 115 kg BW, enzyme activities of protein catabolism in the liver and in the LM did not differ (P > 0.10) between RFI(+) pigs and RFI(-) pigs. Both lactate dehydrogenase activity participating in glucose metabolism and hydroxylacylCoA dehydrogenase activity involved in fatty acid oxidation were greater (P < 0.05) in the liver and LM of RFI(+) pigs compared with RFI(-) pigs. In the liver, contrary to the LM, those differences in enzyme activities were directly associated with selection on RFI regardless of ADFI. Increased backfat depth and content and greater lipid content and adipocyte hypertrophy (P < 0.05) in subcutaneous adipose tissue were reported in RFI(+) pigs compared with RFI(-) pigs at 115 kg BW without marked changes in key lipogenic enzyme activities; these changes were directly associated with ADFI. In conclusion, the present study shows an increase of catabolic pathway activities in the liver and muscle of RFI(+) pigs at market weight that is likely to generate more ATP compared with RFI(-) pigs.

Genetic parameters for haemoglobin levels in pigs and iron content in pork

Genetic parameters were obtained for iron content in m. longissimus dorsi (2255 records) and haemoglobin levels recorded at 5 (4974 records) and 21 (2405 records) weeks of age in two sire lines from September 2009 until January 2011. The measure of iron in pork was the mean of two replicates. Genetic associations of haematological traits with meat quality traits (2255 records), as well as growth rate and backfat (close to 60 000 records), were estimated. Analyses were based on an animal model using residual maximum likelihood procedures. Iron content in pork was moderately heritable (0.34 ± 0.07) and genetic correlations with haemoglobin measures ranged from 0.39 ± 0.24 to 0.58 ± 0.13, indicating their potential use as selection criteria for increasing iron levels in pork. However, heritabilities for haemoglobin levels were low, ranging from 0.04 ± 0.2 to 0.18 ± 0.04. Procedures to measure haemoglobin on farm may require refinement. Redness of pork, quantified by a* value, had high genetic correlations with iron content (0.90 ± 0.04 to 0.94 ± 0.03) and moderate genetic correlations with haemoglobin levels (0.31 ± 0.22 to 0.55 ± 0.15). Iron content had significant genetic associations with L* measures (-0.61 ± 0.14 to -0.54 ± 0.23), b* value (0.60 ± 0.14 for dorsal b* measure, 0.50 ± 0.15 for average of dorsal and ventral b* measures) and pH at 45 min post mortem (-0.42 ± 0.14). These high genetic correlations between colour measurements and iron content in pork provide further avenues for selection strategies to improve iron content in pork. Current selection practices are not expected to affect iron content in pork, as no significant genetic correlations between performance and haematological traits were found.

Typing late prehistoric cows and bulls--osteology and genetics of cattle at the Eketorp ringfort on the Öland island in Sweden

Human management of livestock and the presence of different breeds have been discussed in archaeozoology and animal breeding. Traditionally osteometrics has been the main tool in addressing these questions. We combine osteometrics with molecular sex identifications of 104 of 340 morphometrically analysed bones in order to investigate the use of cattle at the Eketorp ringfort on the Öland island in Sweden. The fort is dated to 300-1220/50 A.D., revealing three different building phases. In order to investigate specific patterns and shifts through time in the use of cattle the genetic data is evaluated in relation to osteometric patterns and occurrence of pathologies on cattle metapodia. Males were genotyped for a Y-chromosomal SNP in UTY19 that separates the two major haplogroups, Y1 and Y2, in taurine cattle. A subset of the samples were also genotyped for one SNP involved in coat coloration (MC1R), one SNP putatively involved in resistance to cattle plague (TLR4), and one SNP in intron 5 of the IGF-1 gene that has been associated to size and reproduction.The results of the molecular analyses confirm that the skeletal assemblage from Eketorp is dominated by skeletal elements from females, which implies that dairying was important. Pathological lesions on the metapodia were classified into two groups; those associated with the use as draught animals and those lesions without a similar aetiology. The results show that while bulls both exhibit draught related lesions and other types of lesions, cows exhibit other types of lesions. Interestingly, a few elements from females exhibit draught related lesions. We conclude that this reflects the different use of adult female and male cattle.Although we note some variation in the use of cattle at Eketorp between Iron Age and Medieval time we have found little evidence for the use of different types of animals for specific purposes. The use of specific (genetic) breeds seems to be a phenomenon that developed later than the Eketorp settlement.

Selection to reduce residual feed intake in pigs produces a correlated response in juvenile insulin-like growth factor-I concentration

Data from a selection experiment for residual feed intake (RFI) were used to estimate genetic correlations between measures of efficiency and performance traits with juvenile IGF-I, and to demonstrate direct and correlated responses to selection. The heritability of IGF-I was 0.28 +/- 0.06 and genetic correlations of IGF-I with feed intake (0.26 +/- 0.17), backfat (0.52 +/- 0.11), and feed conversion ratio (0.78 +/- 0.14) were moderate to large. The estimated and realized genetic correlations between RFI and IGF-I were 0.63 +/- 0.15 and 0.84. In contrast, genetic correlations between IGF-I and lifetime or test period growth did not differ (P > 0.05) significantly from zero (0.06 +/- 0.14 and -0.19 +/- 0.14). Selection for decreased RFI produced a direct response in RFI, as expected, and was accompanied by downward correlated responses in ADFI, juvenile IGF-I, backfat, and growth traits, listed in order of decreasing relative magnitude, and an increased loin muscle area. The correlated response in IGF-I to selection on RFI demonstrates that this physiological measure is genetically associated with efficiency, and is thus useful as an early information source to estimate genetic merit for efficiency before performance testing. Decreased juvenile IGF-I is associated with leaner, more efficient animals.

Effects of early weaning on growth, feed efficiency and carcass traits in Shorthorn cattle

This study aimed to examine the impact of early weaning on residual feed intake, and other production and carcass traits, in a group of cattle subjected to early or conventional weaning treatments, but otherwise managed as contemporaries. Shorthorn (n = 140) calves were randomly allocated by sex and sire to early and conventional weaning treatments. Early weaned animals (n = 69) were weaned at an average of 123 days of age and 145 kg liveweight, while conventionally weaned steers and heifers (n = 71) were 259 days old at weaning and 273 kg. Following conventional weaning, animals were managed as contemporaries through backgrounding, and entered feedlot finishing at a mean age of 353 and 408 days for heifers and steers, respectively, for finishing and feed intake testing. At the conclusion of feed intake testing hip height was measured, and animals were ultrasound scanned to assess fat depth, eye muscle area and percent intramuscular fat. Early weaned animals were significantly lighter (P < 0.001) than their conventionally weaned contemporaries, when weighed at conventional weaning. The weight difference observed at conventional weaning of 19.4 kg between treatment groups persisted throughout the experiment, with significant (P < 0.05) differences of 17.1, 15.6 and 15.8 kg at feedlot entry, and the start and end of the feed intake test period, respectively. Weaning treatment also approached significance for daily feed intake (P = 0.06), with early weaned animals tending to eat less than their conventionally weaned contemporaries (daily feed intake = 11.6 and 12.0 kg, respectively). Weaning treat\ment did not significantly affect feed efficiency whether measured as residual feed intake (P = 0.64) or feed conversion ratio (P = 0.27). None of the other traits measured were significantly affected by weaning treatment. These data showed that early weaning, as implemented for this experiment, resulted in animals that were lighter than their conventionally weaned contemporaries through backgrounding and finishing. Weaning treatment did not, however, influence feed efficiency or the post-weaning growth and carcass composition traits measured for this experiment.

Domestication and growth hormone transgenesis cause similar changes in gene expression in coho salmon (Oncorhynchus kisutch)

Domestication has been extensively used in agricultural animals to modify phenotypes such as growth rate. More recently, transgenesis of growth factor genes [primarily growth hormone (GH)] has also been explored as a rapid approach to accelerating performance of agricultural species. Growth rates of many fishes respond dramatically to GH gene transgenesis, whereas genetic engineering of domestic mammalian livestock has resulted in relatively modest gains. The most dramatic effects of GH transgenesis in fish have been seen in relatively wild strains that have undergone little or no selection for enhanced growth, whereas genetic modification of livestock necessarily has been performed in highly domesticated strains that already possess very rapid growth. Such fast-growing domesticates may be refractory to further stimulation if the same regulatory pathways are being exploited by both genetic approaches. By directly comparing gene expression in wild-type, domestic, and GH transgenic strains of coho salmon, we have found that domestication and GH transgenesis are modifying similar genetic pathways. Genes in many different physiological pathways show modified expression in domestic and GH transgenic strains relative to wild-type, but effects are strongly correlated. Genes specifically involved in growth regulation (IGF1, GHR, IGF-II, THR) are also concordantly regulated in domestic and transgenic fish, and both strains show elevated levels of circulating IGF1. Muscle expression of GH in nontransgenic strains was found to be elevated in domesticated fish relative to wild type, providing a possible mechanism for growth enhancement. These data have implications for genetic improvement of existing domesticated species and risk assessment and regulation of emerging transgenic strains.

Association of CA repeat polymorphism at intron 1 of insulin-like growth factor (IGF-I) gene with circulating IGF-I concentration, growth, and fatness in swine

Evidence is accumulating that intronic polymorphic cytosine-adenosine (CA) repeats may play a role in gene expression. In this work, we investigated whether a polymorphic CA short tandem repeat (STR) located at the first intron of the pig insulin-like growth factor I (IGF-I) gene influences plasma IGF-I concentration in pigs as well as phenotypic variation in growth and fatness traits. We measured plasma IGF-I levels at one to four time points from 35 to 215 days of age in 340 performance-tested Landrace and Duroc pigs previously genotyped for the IGF-I STR. Data were analyzed within breed with a linear mixed model with the number of CA repeats as a covariate. At least five alleles were segregating in each breed, differing in one to seven repeats. The results showed that in each breed, circulating IGF-I at 160 days of age increased with the length of the shortest allele, accounting for an average trend of 4.38 +/- 1.28 ng/ml of IGF-I per additional repeat (P = 0.001). Longer repeats were associated with early growth in Landrace boars (1.92 +/- 0.92 kg per CA at 160 days; P = 0.038) and with back fat thickness (-0.57 +/- 0.20 mm per CA; P = 0.005) and lean content (7.52 +/- 3.00 g/kg per CA at 105 kg; P = 0.013) adjusted for carcass weight in Duroc barrows, as expected from the effect of circulating IGF-I on these traits. The consistency of the results across populations supports the hypothesis that the length of the CA repeats at intron 1 of the IGF-I gene is associated with circulating IGF-I levels, and that this effect is not neutral with respect to growth and fatness.

Effect of genetic resistance to gastrointestinal nematodes on plasma concentrations of insulin-like growth factor-1 and leptin in Merino sheep

Gastrointestinal nematode infection in sheep changes the nutritional economy of the host, but little is known about the effects of infection on the hormonal systems that regulate the metabolism of the animal. This study examined two key hormones, insulin-like growth factor-1 (IGF-1) and leptin, in genetically resistant and random bred control Merino sheep in the presence or absence of nematode infection. Sixty-four 10-month-old Rylington Merino wethers, half from the parasite-resistant line and half from unselected control line, were initially maintained at two body conditions (body condition scores averaged 1.7 and 2.5) in individual pens in an animal house. The animals were kept parasite-free for 9 weeks, then ‘trickle-infected’ with Trichostrongylus colubriformis and Teladorsagia circumcincta larvae, each at a rate of 10 000 per week, for 13 weeks. Each body condition score group was subdivided into two groups at the beginning of the infection procedure and feed supply was controlled at 1× or 1.5× the maintenance metabolisable energy requirement. Plasma IGF-1 concentrations decreased marginally by day 21 of infection, then markedly by day 49, and then remained low until day 84. Plasma leptin concentrations tended to increase during the infection period. Both body condition and feed intake had significant effects on IGF-1 and leptin concentrations, and the higher concentrations were related to the good body condition or high feed intake. The parasite-resistant sheep had consistently higher concentrations of IGF-1 compared with the controls, whereas the concentrations of leptin were similar. The significant changes in IGF-1 but not leptin suggest that infection may have a more significant impact on protein anabolism, and least impact on lipid metabolism. Selection for parasite resistance appears to result in enhanced protein anabolism.

Variation in feed intake of grazing crossbred ewes and genetic correlations with production traits

Feed for maintenance of the ewe flock is a major cost in lamb production systems and a reduction in these feed requirements could have an effect on carrying capacity and both biological and economic efficiency in sheep flocks. Inclusion of feed intake in breeding programs requires knowledge of its genetic variation and genetic relationships with other production traits. This study reports on the variation in relative digestible dry matter intake (rDDMI) of 2528 mature, non-pregnant, crossbred ewes that are the progeny of 91 rams of various maternal breeds. Feed intake of pasture under grazing conditions was estimated using the faecal marker dilution technique with chromium sesquioxide controlled-release devices. There was significant variation in intake associated with liveweight, liveweight gain, prior reproductive status, fat depth, and muscle depth of the ewes. Sire breed was not significant for rDDMI, although there was a considerable range of >30% across sire progeny groups within most sire breeds, and rDDMI had an estimated heritability of 0.41 ±  0.07 (s.e.). The genetic correlations with a range of production traits (growth, carcass, wool, and reproduction) were all close to zero. The potential for inclusion of genetic improvement of efficiency of feed utilisation in breeding programs for sheep is discussed.