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Szabla N, Maria Labecka A, Antoł A, Sobczyk Ł, Angilletta MJ, Czarnoleski M. Evolution and development of Drosophila melanogaster under different thermal conditions affected cell sizes and sensitivity to paralyzing hypoxia. JOURNAL OF INSECT PHYSIOLOGY 2024; 157:104671. [PMID: 38972633 DOI: 10.1016/j.jinsphys.2024.104671] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Revised: 06/29/2024] [Accepted: 07/04/2024] [Indexed: 07/09/2024]
Abstract
Environmental gradients cause evolutionary and developmental changes in the cellular composition of organisms, but the physiological consequences of these effects are not well understood. Here, we studied experimental populations of Drosophila melanogaster that had evolved in one of three selective regimes: constant 16 °C, constant 25 °C, or intergenerational shifts between 16 °C and 25 °C. Genotypes from each population were reared at three developmental temperatures (16 °C, 20.5 °C, and 25 °C). As adults, we measured thorax length and cell sizes in the Malpighian tubules and wing epithelia of flies from each combination of evolutionary and developmental temperatures. We also exposed flies from these treatments to a short period of nearly complete oxygen deprivation to measure hypoxia tolerance. For genotypes from any selective regime, development at a higher temperature resulted in smaller flies with smaller cells, regardless of the tissue. At every developmental temperature, genotypes from the warm selective regime had smaller bodies and smaller wing cells but had larger tubule cells than did genotypes from the cold selective regime. Genotypes from the fluctuating selective regime were similar in size to those from the cold selective regime, but their cells of either tissue were the smallest among the three regimes. Evolutionary and developmental treatments interactively affected a fly's sensitivity to short-term paralyzing hypoxia. Genotypes from the cold selective regime were less sensitive to hypoxia after developing at a higher temperature. Genotypes from the other selective regimes were more sensitive to hypoxia after developing at a higher temperature. Our results show that thermal conditions can trigger evolutionary and developmental shifts in cell size, coupled with changes in body size and hypoxia tolerance. These patterns suggest links between the cellular composition of the body, levels of hypoxia within cells, and the energetic cost of tissue maintenance. However, the patterns can be only partially explained by existing theories about the role of cell size in tissue oxygenation and metabolic performance.
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Affiliation(s)
- Natalia Szabla
- Life History Evolution Group, Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, Gronostajowa 7, 30-387 Kraków, Poland
| | - Anna Maria Labecka
- Life History Evolution Group, Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, Gronostajowa 7, 30-387 Kraków, Poland
| | - Andrzej Antoł
- Life History Evolution Group, Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, Gronostajowa 7, 30-387 Kraków, Poland; MR Consulting Sp. z o.o. Środowiskowa sp.k., Szosa Chełmińska 177-181, 87-100 Toruń, Poland
| | - Łukasz Sobczyk
- Life History Evolution Group, Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, Gronostajowa 7, 30-387 Kraków, Poland
| | | | - Marcin Czarnoleski
- Life History Evolution Group, Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, Gronostajowa 7, 30-387 Kraków, Poland.
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Ansari S, Kite ES, Ramirez R, Steele LJ, Mohseni H. Feasibility of keeping Mars warm with nanoparticles. SCIENCE ADVANCES 2024; 10:eadn4650. [PMID: 39110809 PMCID: PMC11305381 DOI: 10.1126/sciadv.adn4650] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Accepted: 07/09/2024] [Indexed: 08/10/2024]
Abstract
One-third of Mars' surface has shallow-buried H2O, but it is currently too cold for use by life. Proposals to warm Mars using greenhouse gases require a large mass of ingredients that are rare on Mars' surface. However, we show here that artificial aerosols made from materials that are readily available at Mars-for example, conductive nanorods that are ~9 micrometers long-could warm Mars >5 × 103 time smore effectively than the best gases. Such nanoparticles forward-scatter sunlight and efficiently block upwelling thermal infrared. Like the natural dust of Mars, they are swept high into Mars' atmosphere, allowing delivery from the near-surface. For a 10-year particle lifetime, two climate models indicate that sustained release at 30 liters per second would globally warm Mars by ≳30 kelvin and start to melt the ice. Therefore, if nanoparticles can be made at scale on (or delivered to) Mars, then the barrier to warming of Mars appears to be less high than previously thought.
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Affiliation(s)
- Samaneh Ansari
- Department of Electrical and Computer Engineering, Northwestern University, Evanston, IL, USA
| | - Edwin S. Kite
- Department of the Geophysical Sciences, University of Chicago, Chicago, IL, USA
| | - Ramses Ramirez
- Department of Physics, University of Central Florida, Orlando, FL, USA
| | - Liam J. Steele
- Department of the Geophysical Sciences, University of Chicago, Chicago, IL, USA
- European Center for Medium-Range Weather Forecasts, Reading, UK
| | - Hooman Mohseni
- Department of Electrical and Computer Engineering, Northwestern University, Evanston, IL, USA
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3
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Privalova V, Sobczyk Ł, Szlachcic E, Labecka AM, Czarnoleski M. Heat tolerance in Drosophila melanogaster is influenced by oxygen conditions and mutations in cell size control pathways. Philos Trans R Soc Lond B Biol Sci 2024; 379:20220490. [PMID: 38186282 PMCID: PMC10772611 DOI: 10.1098/rstb.2022.0490] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Accepted: 10/17/2023] [Indexed: 01/09/2024] Open
Abstract
Understanding metabolic performance limitations is key to explaining the past, present and future of life. We investigated whether heat tolerance in actively flying Drosophila melanogaster is modified by individual differences in cell size and the amount of oxygen in the environment. We used two mutants with loss-of-function mutations in cell size control associated with the target of rapamycin (TOR)/insulin pathways, showing reduced (mutant rictorΔ2) or increased (mutant Mnt1) cell size in different body tissues compared to controls. Flies were exposed to a steady increase in temperature under normoxia and hypoxia until they collapsed. The upper critical temperature decreased in response to each mutation type as well as under hypoxia. Females, which have larger cells than males, had lower heat tolerance than males. Altogether, mutations in cell cycle control pathways, differences in cell size and differences in oxygen availability affected heat tolerance, but existing theories on the roles of cell size and tissue oxygenation in metabolic performance can only partially explain our results. A better understanding of how the cellular composition of the body affects metabolism may depend on the development of research models that help separate various interfering physiological parameters from the exclusive influence of cell size. This article is part of the theme issue 'The evolutionary significance of variation in metabolic rates'.
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Affiliation(s)
- Valeriya Privalova
- Life History Evolution Group, Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, Gronostajowa 7, 30-387 Kraków, Poland
| | - Łukasz Sobczyk
- Life History Evolution Group, Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, Gronostajowa 7, 30-387 Kraków, Poland
| | - Ewa Szlachcic
- Life History Evolution Group, Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, Gronostajowa 7, 30-387 Kraków, Poland
| | - Anna Maria Labecka
- Life History Evolution Group, Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, Gronostajowa 7, 30-387 Kraków, Poland
| | - Marcin Czarnoleski
- Life History Evolution Group, Institute of Environmental Sciences, Faculty of Biology, Jagiellonian University, Gronostajowa 7, 30-387 Kraków, Poland
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Devoie É, Connon RF, Beddoe R, Goordial J, Quinton WL, Craig JR. Disconnected active layers and unfrozen permafrost: A discussion of permafrost-related terms and definitions. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 912:169017. [PMID: 38040371 DOI: 10.1016/j.scitotenv.2023.169017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2023] [Revised: 11/27/2023] [Accepted: 11/29/2023] [Indexed: 12/03/2023]
Abstract
Permafrost is ground that remains at or below 0 °C for two or more consecutive years. It is overlain by an active layer which thaws and freezes annually. The difference between these definitions - the active layer based on pore water phase and permafrost based on soil temperature - leads to challenges when monitoring and modelling permafrost environments. Contrary to its definition, the key properties of permafrost including hardness, bearing capacity, permeability, unfrozen water content, and energy content, depend primarily on the ice content of permafrost and not its temperature. Temperature-based measurements in permafrost systems often overlook key features, e.g. taliks and cryopegs, and comparisons between measured and modelled systems can differ energetically by up to 90 % while reporting the same temperature. Due to the shortcomings of the temperature-based definition, it is recommended that an estimate of ice content be reported alongside temperature in permafrost systems for both in-situ measurements and modelling applications. PLAIN LANGUAGE SUMMARY: Permafrost is ground that remains at or below 0 °C for two or more consecutive years. Above it sits an active layer which thaws and freezes annually (meaning that the water in the ground changes to ice each winter). The difference between these definitions - the active layer based on the state or water in the ground and permafrost based on ground temperature - leads to challenges when measuring (in the field) and modelling (using computers) permafrost environments. In addition to these challenges, the key properties of permafrost including its ability to support infrastructure, convey water, and absorb energy depend more on its ice content than its temperature. Due to the shortcomings of the temperature-based definition, it is recommended that an estimate of ice content be reported alongside temperature in permafrost systems for both field measurements and modelling applications.
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Affiliation(s)
- É Devoie
- Department of Civil Engineering, Queen's University, Canada.
| | - R F Connon
- Department of Environment and Climate Change, Government of the Northwest Territories, Canada
| | - R Beddoe
- Department of Civil Engineering, Royal Military College of Canada, Canada
| | - J Goordial
- School of Environmental Sciences, University of Guelph, Canada
| | - W L Quinton
- Cold Regions Research Centre, Wilfrid Laurier University, Canada
| | - J R Craig
- Department of Civil and Environmental Engineering, University of Waterloo, Canada
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Dey S, Folkestad SD, Paul AC, Koch H, Krylov AI. Core-ionization spectrum of liquid water. Phys Chem Chem Phys 2024; 26:1845-1859. [PMID: 38174659 DOI: 10.1039/d3cp02499g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2024]
Abstract
We present state-of-the-art calculations of the core-ionization spectrum of water. Despite significant progress in procedures developed to mitigate various experimental complications and uncertainties, the experimental determination of ionization energies of solvated species involves several non-trivial steps such as assessing the effect of the surface potential, electrolytes, and finite escape depths of photoelectrons. This provides a motivation to obtain robust theoretical values of the intrinsic bulk ionization energy and the corresponding solvent-induced shift. Here we develop theoretical protocols based on coupled-cluster theory and electrostatic embedding. Our value of the intrinsic solvent-induced shift of the 1sO ionization energy of water is -1.79 eV. The computed absolute position and the width of the 1sO peak in photoelectron spectrum of water are 538.47 eV and 1.44 eV, respectively, agreeing well with the best experimental values.
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Affiliation(s)
- Sourav Dey
- Department of Chemistry, University of Southern California, Los Angeles, CA 90089, USA.
| | - Sarai Dery Folkestad
- Department of Chemistry, University of Southern California, Los Angeles, CA 90089, USA.
| | - Alexander C Paul
- Department of Chemistry, Norwegian University of Science and Technology, 7491 Trondheim, Norway
| | - Henrik Koch
- Department of Chemistry, Norwegian University of Science and Technology, 7491 Trondheim, Norway
| | - Anna I Krylov
- Department of Chemistry, University of Southern California, Los Angeles, CA 90089, USA.
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Lingam M. Information Transmission via Molecular Communication in Astrobiological Environments. ASTROBIOLOGY 2024; 24:84-99. [PMID: 38109216 DOI: 10.1089/ast.2023.0069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/20/2023]
Abstract
The ubiquity of information transmission via molecular communication between cells is comprehensively documented on Earth; this phenomenon might even have played a vital role in the origin(s) and early evolution of life. Motivated by these considerations, a simple model for molecular communication entailing the diffusion of signaling molecules from transmitter to receiver is elucidated. The channel capacity C (maximal rate of information transmission) and an optimistic heuristic estimate of the actual information transmission rate ℐ are derived for this communication system; the two quantities, especially the latter, are demonstrated to be broadly consistent with laboratory experiments and more sophisticated theoretical models. The channel capacity exhibits a potentially weak dependence on environmental parameters, whereas the actual information transmission rate may scale with the intercellular distance d as ℐ ∝ d-4 and could vary substantially across settings. These two variables are roughly calculated for diverse astrobiological environments, ranging from Earth's upper oceans (C ∼ 3.1 × 103 bits/s; ℐ ∼ 4.7 × 10-2 bits/s) and deep sea hydrothermal vents (C ∼ 4.2 × 103 bits/s; ℐ ∼ 1.2 × 10-1 bits/s) to the hydrocarbon lakes and seas of Titan (C ∼ 3.8 × 103 bits/s; ℐ ∼ 2.6 × 10-1 bits/s).
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Affiliation(s)
- Manasvi Lingam
- Department of Aerospace, Physics and Space Sciences, Florida Institute of Technology, Melbourne, Florida, USA
- Department of Physics, The University of Texas at Austin, Austin, Texas, USA
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Ray AE, Tribbia DZ, Cowan DA, Ferrari BC. Clearing the air: unraveling past and guiding future research in atmospheric chemosynthesis. Microbiol Mol Biol Rev 2023; 87:e0004823. [PMID: 37914532 PMCID: PMC10732025 DOI: 10.1128/mmbr.00048-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2023] Open
Abstract
SUMMARY Atmospheric chemosynthesis is a recently proposed form of chemoautotrophic microbial primary production. The proposed process relies on the oxidation of trace concentrations of hydrogen (≤530 ppbv), carbon monoxide (≤90 ppbv), and methane (≤1,870 ppbv) gases using high-affinity enzymes. Atmospheric hydrogen and carbon monoxide oxidation have been primarily linked to microbial growth in desert surface soils scarce in liquid water and organic nutrients, and low in photosynthetic communities. It is well established that the oxidation of trace hydrogen and carbon monoxide gases widely supports the persistence of microbial communities in a diminished metabolic state, with the former potentially providing a reliable source of metabolic water. Microbial atmospheric methane oxidation also occurs in oligotrophic desert soils and is widespread throughout copiotrophic environments, with established links to microbial growth. Despite these findings, the direct link between trace gas oxidation and carbon fixation remains disputable. Here, we review the supporting evidence, outlining major gaps in our understanding of this phenomenon, and propose approaches to validate atmospheric chemosynthesis as a primary production process. We also explore the implications of this minimalistic survival strategy in terms of nutrient cycling, climate change, aerobiology, and astrobiology.
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Affiliation(s)
- Angelique E. Ray
- School of Biotechnology and Biomolecular Sciences, UNSW Sydney, Sydney, Australia
- Australian Centre for Astrobiology, UNSW Sydney, Sydney, Australia
| | - Dana Z. Tribbia
- School of Biotechnology and Biomolecular Sciences, UNSW Sydney, Sydney, Australia
- Australian Centre for Astrobiology, UNSW Sydney, Sydney, Australia
| | - Don A. Cowan
- Centre for Microbial Ecology and Genomics, Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, South Africa
| | - Belinda C. Ferrari
- School of Biotechnology and Biomolecular Sciences, UNSW Sydney, Sydney, Australia
- Australian Centre for Astrobiology, UNSW Sydney, Sydney, Australia
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Burke SE, Auvil ZA, Hanold KA, Continetti RE. Detection of intact amino acids with a hypervelocity ice grain impact mass spectrometer. Proc Natl Acad Sci U S A 2023; 120:e2313447120. [PMID: 38048472 PMCID: PMC10723046 DOI: 10.1073/pnas.2313447120] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2023] [Accepted: 10/23/2023] [Indexed: 12/06/2023] Open
Abstract
Astrobiology studies are a top priority in answering one of the most fundamental questions in planetary science: Is there life beyond Earth? Saturn's icy moon Enceladus is a prime target in the search for life in our solar system, identified by NASA as the second-highest priority site for a flagship mission in the next decade. The orbital sampling technique of impact ionization mass spectrometry indicated the presence of complex organics in the small icy plume particles ejected by Enceladus encountered previously by Cassini. However, high interaction velocities caused ambiguity as to the origin and identity of the organics. Laboratory validation of this technique is needed to show that biosignature molecules can survive an impact at hypervelocity speeds for detection. Here, we present results on the hypervelocity impact of organic-laden submicron ice grains for in situ mass spectrometric characterization with the first technique to accurately replicate this plume sampling scenario: the Hypervelocity Ice Grain Impact Mass Spectrometer. Our results show good agreement with Cassini data at comparable compositions. We show that amino acids entrained in ice grains can be detected intact after impact at speeds up to 4.2 km/s and that salt reduces their detectability, validating the predictions from other model systems. Our results provide a benchmark for this orbital sampling method to successfully detect signs of life and for the interpretation of past and future data. This work has implications not only for a potential Enceladus mission but also for the forthcoming Europa Clipper mission.
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Affiliation(s)
- Sally E. Burke
- Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA92093-0340
| | - Zachary A. Auvil
- Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA92093-0340
| | - Karl A. Hanold
- Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA92093-0340
| | - Robert E. Continetti
- Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA92093-0340
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Coker JA. 'All About' Extremophiles. Fac Rev 2023; 12:27. [PMID: 38027090 PMCID: PMC10630985 DOI: 10.12703/r/12-27] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2023] Open
Abstract
Despite common perception, most of Earth is what is often referred to as an 'extreme environment.' Yet to the organisms that call these places home, it is simply that (home). They have adapted to thrive in these environments and, in the process, have evolved many unique adaptations at the molecular- and 'omic-level. Scientists' interest in these organisms has typically been in how they and their products can be harnessed for biotechnological applications and the environments where they are found, while the general public's veers more toward a fascination with their deviation from the 'norm'. However, these organisms have so much more to tell us about Life and the myriad ways there are to perform 'simple' biological processes.
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Affiliation(s)
- James A Coker
- Center for Biotechnology Education, Advanced Academic Programs, Krieger School of Arts and Sciences, Johns Hopkins University, 3400 N. Charles St., Baltimore, MD 21218, USA
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Madhusudhan N, Moses JI, Rigby F, Barrier E. Chemical conditions on Hycean worlds. Faraday Discuss 2023; 245:80-111. [PMID: 37530120 DOI: 10.1039/d3fd00075c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/03/2023]
Abstract
Traditionally, the search for life on exoplanets has been predominantly focused on rocky exoplanets. The recently proposed Hycean worlds have the potential to significantly expand and accelerate the search for life elsewhere. Hycean worlds are a class of habitable sub-Neptunes with planet-wide oceans and H2-rich atmospheres. Their broad range of possible sizes and temperatures lead to a wide habitable zone and high potential for discovery and atmospheric characterization using transit spectroscopy. Over a dozen candidate Hycean planets are already known to be transiting nearby M dwarfs, making them promising targets for atmospheric characterization with the James Webb Space Telescope (JWST). In this work, we investigate possible chemical conditions on a canonical Hycean world, focusing on (a) the present and primordial molecular composition of the atmosphere, and (b) the inventory of bioessential elements for the origin and sustenance of life in the ocean. Based on photochemical and kinetic modeling for a range of conditions, we discuss the possible chemical evolution and observable present-day composition of its atmosphere. In particular, for reduced primordial conditions the early atmospheric evolution passes through a phase that is rich in organic molecules that could provide important feedstock for prebiotic chemistry. We investigate avenues for delivering bioessential metals to the ocean, considering the challenging lack of weathering from a rocky surface and the ocean separated from the rocky core by a thick icy mantle. Based on ocean depths from internal structure modelling and elemental estimates for the early Earth's oceans, we estimate the requirements for bioessential metals in such a planet. We find that the requirements can be met for plausible assumptions about impact history and atmospheric sedimentation, and supplemented by other steady state sources. We discuss the observational prospects for atmospheric characterisation of Hycean worlds with JWST and future directions of this new paradigm in the search for life on exoplanets.
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Affiliation(s)
| | | | - Frances Rigby
- Institute of Astronomy, University of Cambridge, Cambridge, UK.
| | - Edouard Barrier
- Institute of Astronomy, University of Cambridge, Cambridge, UK.
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Zupanska AK, Arena C, Zuñiga GE, Casanova-Katny A, Turnbull JD, Bravo LA, Ramos P, Sun H, Shishov VV. Editorial: Revisiting the limits of plant life - plant adaptations to extreme terrestrial environments relating to astrobiology and space biology. FRONTIERS IN PLANT SCIENCE 2023; 14:1267183. [PMID: 37662183 PMCID: PMC10472590 DOI: 10.3389/fpls.2023.1267183] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Accepted: 08/07/2023] [Indexed: 09/05/2023]
Affiliation(s)
| | - Carmen Arena
- Department of Biology, University of Naples Federico II, Naples, Italy
| | - Gustavo E. Zuñiga
- Laboratorio de Fisiología y Biotecnología Vegetal, Universidad de Santiago de Chile, Santiago, Chile
| | - Angelica Casanova-Katny
- Department of Environmental Sciences, Faculty of Natural Resources, Catholic University of Temuco, Temuco, Chile
| | - Johanna D. Turnbull
- School of Earth, Atmospheric and Life Sciences (SEALS), University of Wollongong, Wollongong, NSW, Australia
| | | | - Patricio Ramos
- Instituto de Ciencias Biológicas, Universidad de Talca, Talca, Chile
- Vicerrectoría de Investigación y Postgrado, Universidad Católica del Maule, Talca, Chile
| | - Hang Sun
- Kunming Institute of Botany, Chinese Academy of Sciences (CAS), Kunming, China
| | - Vladimir V. Shishov
- School of Fundamental Biology and Biotechnology, Siberian Federal University, Krasnoyarsk, Russia
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12
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Moors H, De Craen M, Smolders C, Provoost A, Leys N. The waterbodies of the halo-volcanic Dallol complex: earth analogs to guide us, where to look for life in the universe. Front Microbiol 2023; 14:1134760. [PMID: 37520359 PMCID: PMC10382021 DOI: 10.3389/fmicb.2023.1134760] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Accepted: 06/30/2023] [Indexed: 08/01/2023] Open
Abstract
Microbes are the Earth life forms that have the highest degree of adaptability to survive, live, or even proliferate in very hostile environments. It is even stated that microbes can cope with any extreme physico-chemical condition and are, therefore, omnipresent all over the Earth: on all the continents, inside its crust and in all its waterbodies. However, our study suggests that there exists areas and even water rich environments on Earth where no life is possible. To support the fact that water rich environments can be lifeless, we performed an extensive survey of 10 different hyper extreme waterbodies of the halo-volcanic Dallol complex (Danakil depression, Ethiopia, Horn of Africa). In our study, we combined physico-chemical analyses, mineralogical investigations, XRD and SEM-EDX analyses, ATP measurements, 16S rDNA microbial community determinations, and microbial culturing techniques. According to our findings, we suggest that the individual physico-chemical parameters, water activity, and kosmo-chaotropicity, are the two most important factors that determine whether an environment is lifeless or capable of hosting specific extreme lifeforms. Besides, waterbodies that contained saturated levels of sodium chloride but at the same time possessed extreme low pH values, appeared to be poly-extreme environments in which no life could be detected. However, we clearly discovered a low diversity microbial community in waterbodies that were fully saturated with sodium chloride and only mildly acidic. Our results can be beneficial to more precisely classify whole or certain areas of planetary bodies, including water rich environments, as either potentially habitable or factual uninhabitable environments.
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Affiliation(s)
- Hugo Moors
- Microbiology Unit, Belgian Nuclear Research Center (SCK CEN), Nuclear Medical Applications Institute (NMA), Mol, Belgium
| | - Mieke De Craen
- Research and Development Disposal, Belgian Nuclear Research Center (SCK CEN), Waste and Disposal (W&D), Mol, Belgium
- European Underground Research Infrastructure for Disposal of Nuclear Waste in Clay Environment, EIG EURIDICE, Mol, Belgium
| | - Carla Smolders
- Microbiology Unit, Belgian Nuclear Research Center (SCK CEN), Nuclear Medical Applications Institute (NMA), Mol, Belgium
| | - Ann Provoost
- Microbiology Unit, Belgian Nuclear Research Center (SCK CEN), Nuclear Medical Applications Institute (NMA), Mol, Belgium
| | - Natalie Leys
- Microbiology Unit, Belgian Nuclear Research Center (SCK CEN), Nuclear Medical Applications Institute (NMA), Mol, Belgium
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13
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Martin PR, Ghalambor CK. A Case for the "Competitive Exclusion-Tolerance Rule" as a General Cause of Species Turnover along Environmental Gradients. Am Nat 2023; 202:1-17. [PMID: 37384767 DOI: 10.1086/724683] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2023]
Abstract
AbstractClosely related, ecologically similar species often segregate their distributions along environmental gradients of time, space, and resources, but previous research suggests diverse underlying causes. Here, we review reciprocal removal studies in nature that experimentally test the role of interactions among species in determining their turnover along environmental gradients. We find consistent evidence for asymmetric exclusion coupled with differences in environmental tolerance causing the segregation of species pairs, where a dominant species excludes a subordinate from benign regions of the gradient but is unable to tolerate challenging regions to which the subordinate species is adapted. Subordinate species were consistently smaller and performed better in regions of the gradient typically occupied by the dominant species compared with their native distribution. These results extend previous ideas contrasting competitive ability with adaptation to abiotic stress to include a broader diversity of species interactions (intraguild predation, reproductive interference) and environmental gradients, including gradients of biotic challenge. Collectively, these findings suggest that adaptation to environmental challenge compromises performance in antagonistic interactions with ecologically similar species. The consistency of this pattern across diverse organisms, environments, and biomes suggests generalizable processes structuring the segregation of ecologically similar species along disparate environmental gradients, a phenomenon that we propose should be named the competitive exclusion-tolerance rule.
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Molina-Montenegro MA, Escobedo VM, Atala C. Inoculation with extreme endophytes improves performance and nutritional quality in crop species grown under exoplanetary conditions. FRONTIERS IN PLANT SCIENCE 2023; 14:1139704. [PMID: 37426965 PMCID: PMC10325655 DOI: 10.3389/fpls.2023.1139704] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/07/2023] [Accepted: 04/28/2023] [Indexed: 07/11/2023]
Abstract
Introduction Technological advances have made possible long space travels and even exoplanetary colonies in the future. Nevertheless, the success of these activities depends on our ability to produce edible plants in stressful conditions such as high radiation, extreme temperatures and low oxygen levels. Since beneficial microorganisms, such as fungal endophytes from extreme environments, have helped agriculture cope with those difficulties, endophytic fungi may be a putative tool to ensure plant growth under exoplanetary conditions. Additionally, growing crops in polyculture has been shown to increase productivity and spatial efficiency, which is essential given the likely space restrictions in such conditions. Methods We evaluated the effect of the inoculation with a mix of two fungal endophytes from the Atacama Desert on performance (survival and biomass) and nutritional quality of three crop species (lettuce, chard and spinach) grown under exoplanetary conditions. In addition, we measured the amount of antioxidants (flavonoids and phenolics) as possible mechanisms to cope with such abiotic conditions. The exoplanetary conditions were; high UV radiation, low temperature, low water availability, and low oxygen levels. These crops were put in growing chambers in monoculture, dual culture and polyculture (the three species in the same pot) for 30 days. Results and Discussion Our results show that inoculation with extreme endophytes improved survival by ca. 15 - 35% and biomass by ca. 30 - 35% in all crop species. The most evident increase was when grown in polyculture, except for survival in spinach, where inoculated plants had higher survival only in dual culture. Nutritional quality and the amount of the antioxidant compounds antioxidants increased in all crop species when inoculated with the endophytes. Overall, fungal endophytes isolated from extreme environments such as the Atacama Desert, the driest desert in the world, could be a key biotechnological tool for future space agriculture, helping plants cope with environmental stress. Additionally, inoculated plants should be grown in polyculture to increase crop turnover and space-use efficiency. Lastly, these results provide useful insights to face the future challenges of space-farming.
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Affiliation(s)
- Marco A. Molina-Montenegro
- Centre for Integrative Ecology, Instituto de Ciencias Biológicas, Universidad de Talca, Talca, Chile
- Centro de Investigación en Estudios Avanzados del Maule (CIEAM), Universidad Católica del Maule, Talca, Chile
| | - Victor M. Escobedo
- Centre for Integrative Ecology, Instituto de Ciencias Biológicas, Universidad de Talca, Talca, Chile
- Instituto de Investigación Interdisciplinaria (I), Universidad de Talca, Talca, Chile
| | - Cristian Atala
- Instituto de Biología, Facultad de Ciencias, Pontificia Universidad Católica de Valparaíso, Valparaíso, Chile
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15
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Atanasov R, Ailenei D, Bortnic R, Hirian R, Souca G, Szatmari A, Barbu-Tudoran L, Deac IG. Magnetic Properties and Magnetocaloric Effect of Polycrystalline and Nano-Manganites Pr 0.65Sr (0.35-x)Ca xMnO 3 (x ≤ 0.3). NANOMATERIALS (BASEL, SWITZERLAND) 2023; 13:1373. [PMID: 37110958 PMCID: PMC10145517 DOI: 10.3390/nano13081373] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/19/2023] [Revised: 04/10/2023] [Accepted: 04/11/2023] [Indexed: 06/19/2023]
Abstract
Here we report investigations of bulk and nano-sized Pr0.65Sr(0.35-x)CaxMnO3 compounds (x ≤ 0.3). Solid-state reaction was implemented for polycrystalline compounds and a modified sol-gel method was used for nanocrystalline compounds. X-ray diffraction disclosed diminishing cell volume with increasing Ca substitution in Pbnm space group for all samples. Optical microscopy was used for bulk surface morphology and transmission electron microscopy was utilized for nano-sized samples. Iodometric titration showed oxygen deficiency for bulk compounds and oxygen excess for nano-sized particles. Measurements of resistivity of bulk samples revealed features at temperatures associated with grain boundary condition and with ferromagnetic (FM)/paramagnetic (PM) transition. All samples exhibited negative magnetoresistivity. Magnetic critical behavior analysis suggested the polycrystalline samples are governed by a tricritical mean field model while nanocrystalline samples are governed by a mean field model. Curie temperatures values lower with increasing Ca substitution from 295 K for the parent compound to 201 K for x = 0.2. Bulk compounds exhibit high entropy change, with the highest value of 9.21 J/kgK for x = 0.2. Magnetocaloric effect and the possibility of tuning the Curie temperature by Ca substitution of Sr make the investigated bulk polycrystalline compounds promising for application in magnetic refrigeration. Nano-sized samples possess wider effective entropy change temperature (ΔTfwhm) and lower entropy changes of around 4 J/kgK which, however, puts in doubt their straightforward potential for applications as magnetocaloric materials.
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Affiliation(s)
- Roman Atanasov
- Faculty of Physics, Babes-Bolyai University, Str. Kogalniceanu 1, 400084 Cluj-Napoca, Romania; (R.A.); (D.A.); (R.B.); (R.H.); (G.S.); (A.S.)
| | - Dorin Ailenei
- Faculty of Physics, Babes-Bolyai University, Str. Kogalniceanu 1, 400084 Cluj-Napoca, Romania; (R.A.); (D.A.); (R.B.); (R.H.); (G.S.); (A.S.)
| | - Rares Bortnic
- Faculty of Physics, Babes-Bolyai University, Str. Kogalniceanu 1, 400084 Cluj-Napoca, Romania; (R.A.); (D.A.); (R.B.); (R.H.); (G.S.); (A.S.)
| | - Razvan Hirian
- Faculty of Physics, Babes-Bolyai University, Str. Kogalniceanu 1, 400084 Cluj-Napoca, Romania; (R.A.); (D.A.); (R.B.); (R.H.); (G.S.); (A.S.)
| | - Gabriela Souca
- Faculty of Physics, Babes-Bolyai University, Str. Kogalniceanu 1, 400084 Cluj-Napoca, Romania; (R.A.); (D.A.); (R.B.); (R.H.); (G.S.); (A.S.)
| | - Adam Szatmari
- Faculty of Physics, Babes-Bolyai University, Str. Kogalniceanu 1, 400084 Cluj-Napoca, Romania; (R.A.); (D.A.); (R.B.); (R.H.); (G.S.); (A.S.)
| | - Lucian Barbu-Tudoran
- National Institute for Research and Development of Isotopic and Molecular Technologies, Str. Donath 67-103, 400293 Cluj-Napoca, Romania;
| | - Iosif Grigore Deac
- Faculty of Physics, Babes-Bolyai University, Str. Kogalniceanu 1, 400084 Cluj-Napoca, Romania; (R.A.); (D.A.); (R.B.); (R.H.); (G.S.); (A.S.)
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16
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Ahmaruzzaman M. Magnetic nanocomposite adsorbents for abatement of arsenic species from water and wastewater. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:82681-82708. [PMID: 36219282 DOI: 10.1007/s11356-022-23357-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Accepted: 09/26/2022] [Indexed: 06/16/2023]
Abstract
The presence of high concentrations of arsenic species in drinking water and other water bodies has become one of the most critical environmental concerns. Therefore, decontamination of arsenic-containing water is essential for improved health and environmental concern. In recent years, nano-adsorbents have been widely used for the adsorptive removal of arsenic from water. Separating existing nano-adsorbents from treated waters, on the other hand, is a critical issue for their potential applications in natural water treatment. To address these issues and to effectively remove arsenic from water, researchers looked at iron oxide-based magnetic nanocomposite adsorbents. The magnetic nanoadsorbents have the benefit of surface functionalization, making it easier to target a specific pollutant for adsorption, and magnetic separation. In addition, magnetic nanoparticles have a large surface area, high chemical inertness, superparamagnetic, high magnetic susceptibility, small particle size, and large specific surface area, and are especially easily separated in a magnetic field. Magnetic nano-adsorbents have been discovered to have a lot of potential for eliminating arsenic from water. The recent advances in magnetic nano-absorbents for the cleanup of arsenic species from water are summarized in this paper. Future perspectives and directions were also discussed in this article. This will help budding researchers for the further advancement of magnetic nanocomposites for the treatment of water and wastewater contaminated with arsenic.
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Affiliation(s)
- Mohammed Ahmaruzzaman
- Department of Chemistry, National Institute of Technology, Silchar-788010, Assam, India.
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17
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Pascoal F, Areosa I, Torgo L, Branco P, Baptista MS, Lee CK, Cary SC, Magalhães C. The spatial distribution and biogeochemical drivers of nitrogen cycle genes in an Antarctic desert. Front Microbiol 2022; 13:927129. [PMID: 36274733 PMCID: PMC9583160 DOI: 10.3389/fmicb.2022.927129] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2022] [Accepted: 09/06/2022] [Indexed: 11/13/2022] Open
Abstract
Antarctic deserts, such as the McMurdo Dry Valleys (MDV), represent extremely cold and dry environments. Consequently, MDV are suitable for studying the environment limits on the cycling of key elements that are necessary for life, like nitrogen. The spatial distribution and biogeochemical drivers of nitrogen-cycling pathways remain elusive in the Antarctic deserts because most studies focus on specific nitrogen-cycling genes and/or organisms. In this study, we analyzed metagenome and relevant environmental data of 32 MDV soils to generate a complete picture of the nitrogen-cycling potential in MDV microbial communities and advance our knowledge of the complexity and distribution of nitrogen biogeochemistry in these harsh environments. We found evidence of nitrogen-cycling genes potentially capable of fully oxidizing and reducing molecular nitrogen, despite the inhospitable conditions of MDV. Strong positive correlations were identified between genes involved in nitrogen cycling. Clear relationships between nitrogen-cycling pathways and environmental parameters also indicate abiotic and biotic variables, like pH, water availability, and biological complexity that collectively impose limits on the distribution of nitrogen-cycling genes. Accordingly, the spatial distribution of nitrogen-cycling genes was more concentrated near the lakes and glaciers. Association rules revealed non-linear correlations between complex combinations of environmental variables and nitrogen-cycling genes. Association rules for the presence of denitrification genes presented a distinct combination of environmental variables from the remaining nitrogen-cycling genes. This study contributes to an integrative picture of the nitrogen-cycling potential in MDV.
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Affiliation(s)
- Francisco Pascoal
- Interdisciplinary Center of Marine and Environmental Research, University of Porto, Porto, Portugal
- Faculty of Sciences, University of Porto, Porto, Portugal
| | - Inês Areosa
- Faculty of Computer Science, Dalhousie University, Halifax, NS, Canada
| | - Luís Torgo
- Faculty of Computer Science, Dalhousie University, Halifax, NS, Canada
| | - Paula Branco
- School of Electrical Engineering and Computer Science, University of Ottawa, Ottawa, ON, Canada
| | - Mafalda S. Baptista
- Interdisciplinary Center of Marine and Environmental Research, University of Porto, Porto, Portugal
- International Centre for Terrestrial Antarctic Research, University of Waikato, Hamilton, New Zealand
| | - Charles K. Lee
- International Centre for Terrestrial Antarctic Research, University of Waikato, Hamilton, New Zealand
- School of Science, University of Waikato, Hamilton, New Zealand
| | - S. Craig Cary
- International Centre for Terrestrial Antarctic Research, University of Waikato, Hamilton, New Zealand
- School of Science, University of Waikato, Hamilton, New Zealand
- S. Craig Cary,
| | - Catarina Magalhães
- Interdisciplinary Center of Marine and Environmental Research, University of Porto, Porto, Portugal
- Faculty of Sciences, University of Porto, Porto, Portugal
- *Correspondence: Catarina Magalhães,
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18
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Lomas T. Stranger than we can imagine: the possibility and potential significance of non-human forms of consciousness and wellbeing. THE JOURNAL OF POSITIVE PSYCHOLOGY 2022. [DOI: 10.1080/17439760.2022.2131608] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Tim Lomas
- Human Flourishing Program, Harvard University
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19
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Wirth J, Young M. Viruses in Subsurface Environments. Annu Rev Virol 2022; 9:99-119. [PMID: 36173700 DOI: 10.1146/annurev-virology-093020-015957] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Over the past 20 years, our knowledge of virus diversity and abundance in subsurface environments has expanded dramatically through application of quantitative metagenomic approaches. In most subsurface environments, viral diversity and abundance rival viral diversity and abundance observed in surface environments. Most of these viruses are uncharacterized in terms of their hosts and replication cycles. Analysis of accessory metabolic genes encoded by subsurface viruses indicates that they evolved to replicate within the unique features of their environments. The key question remains: What role do these viruses play in the ecology and evolution of the environments in which they replicate? Undoubtedly, as more virologists examine the role of viruses in subsurface environments, new insights will emerge.
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Affiliation(s)
- Jennifer Wirth
- Department of Plant Science and Plant Pathology and Thermal Biology Institute, Montana State University, Bozeman, Montana, USA;
| | - Mark Young
- Department of Plant Science and Plant Pathology and Thermal Biology Institute, Montana State University, Bozeman, Montana, USA;
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20
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Sephus CD, Fer E, Garcia AK, Adam ZR, Schwieterman EW, Kaçar B. Earliest photic zone niches probed by ancestral microbial rhodopsins. Mol Biol Evol 2022; 39:6582242. [PMID: 35524714 PMCID: PMC9117797 DOI: 10.1093/molbev/msac100] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
Abstract
For billions of years, life has continuously adapted to dynamic physical conditions near the Earth’s surface. Fossils and other preserved biosignatures in the paleontological record are the most direct evidence for reconstructing the broad historical contours of this adaptive interplay. However, biosignatures dating to Earth’s earliest history are exceedingly rare. Here, we combine phylogenetic inference of primordial rhodopsin proteins with modeled spectral features of the Precambrian Earth environment to reconstruct the paleobiological history of this essential family of photoactive transmembrane proteins. Our results suggest that ancestral microbial rhodopsins likely acted as light-driven proton pumps and were spectrally tuned toward the absorption of green light, which would have enabled their hosts to occupy depths in a water column or biofilm where UV wavelengths were attenuated. Subsequent diversification of rhodopsin functions and peak absorption frequencies was enabled by the expansion of surface ecological niches induced by the accumulation of atmospheric oxygen. Inferred ancestors retain distinct associations between extant functions and peak absorption frequencies. Our findings suggest that novel information encoded by biomolecules can be used as “paleosensors” for conditions of ancient, inhabited niches of host organisms not represented elsewhere in the paleontological record. The coupling of functional diversification and spectral tuning of this taxonomically diverse protein family underscores the utility of rhodopsins as universal testbeds for inferring remotely detectable biosignatures on inhabited planetary bodies.
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Affiliation(s)
- Cathryn D Sephus
- NASA Center for Early Life and Evolution, University of Wisconsin-Madison, Madison, WI, USA
| | - Evrim Fer
- NASA Center for Early Life and Evolution, University of Wisconsin-Madison, Madison, WI, USA.,Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.,Microbiology Doctoral Training Program, University of Wisconsin-Madison, Madison, WI, USA
| | - Amanda K Garcia
- Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA
| | - Zachary R Adam
- Department of Geoscience, University of Wisconsin-Madison, Madison, WI, USA.,Blue Marble Space Institute of Science, Seattle, WA, USA
| | - Edward W Schwieterman
- Blue Marble Space Institute of Science, Seattle, WA, USA.,Department of Earth and Planetary Sciences, University of California, Riverside, CA, USA
| | - Betül Kaçar
- NASA Center for Early Life and Evolution, University of Wisconsin-Madison, Madison, WI, USA.,Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA
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21
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Rossetto D, Mansy SS. Metals Are Integral to Life as We Know It. Front Cell Dev Biol 2022; 10:864830. [PMID: 35309928 PMCID: PMC8930831 DOI: 10.3389/fcell.2022.864830] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2022] [Accepted: 02/18/2022] [Indexed: 11/13/2022] Open
Abstract
Investigations of biology and the origins of life regularly focus on the components of the central dogma and thus the elements that compose nucleic acids and peptides. Less attention is given to the inorganic components of a biological cell, which are required for biological polymers to function. The Earth was and continues to be rich in metals, and so investigations of the emergence and evolution of life must account for the role that metal ions play. Evolution is shaped by what is present, and not all elements of the periodic table are equally accessible. The presence of metals, the solubility of their ions, and their intrinsic reactivity all impacted the composition of the cells that emerged. Geological and bioinformatic analyses clearly show that the suite of accessible metal ions changed over the history of the Earth; however, such analyses tend to be interpreted in comparison to average oceanic conditions, which do not represent well the many niche environments present on the Earth. While there is still debate concerning the sequence of events that led to extant biology, what is clear is that life as we know it requires metals, and that past and current metal-dependent events remain, at least partially, imprinted in the chemistry of the cell.
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Affiliation(s)
| | - Sheref S Mansy
- D-CIBIO, University of Trento, Povo, Italy
- Department of Chemistry, University of Alberta, Edmonton, AB, Canada
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22
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Drewitt JWE. Liquid structure under extreme conditions: high-pressure x-ray diffraction studies. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2021; 33:503004. [PMID: 34544063 DOI: 10.1088/1361-648x/ac2865] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2021] [Accepted: 09/20/2021] [Indexed: 06/13/2023]
Abstract
Under extreme conditions of high pressure and temperature, liquids can undergo substantial structural transformations as their atoms rearrange to minimise energy within a more confined volume. Understanding the structural response of liquids under extreme conditions is important across a variety of disciplines, from fundamental physics and exotic chemistry to materials and planetary science.In situexperiments and atomistic simulations can provide crucial insight into the nature of liquid-liquid phase transitions and the complex phase diagrams and melting relations of high-pressure materials. Structural changes in natural magmas at the high-pressures experienced in deep planetary interiors can have a profound impact on their physical properties, knowledge of which is important to inform geochemical models of magmatic processes. Generating the extreme conditions required to melt samples at high-pressure, whilst simultaneously measuring their liquid structure, is a considerable challenge. The measurement, analysis, and interpretation of structural data is further complicated by the inherent disordered nature of liquids at the atomic-scale. However, recent advances in high-pressure technology mean that liquid diffraction measurements are becoming more routinely feasible at synchrotron facilities around the world. This topical review examines methods for high pressure synchrotron x-ray diffraction of liquids and the wide variety of systems which have been studied by them, from simple liquid metals and their remarkable complex behaviour at high-pressure, to molecular-polymeric liquid-liquid transitions in pnicogen and chalcogen liquids, and density-driven structural transformations in water and silicate melts.
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Affiliation(s)
- James W E Drewitt
- School of Physics, University of Bristol, H H Wills Physics Laboratory, Tyndall Avenue, Bristol, BS8 1TL, United Kingdom
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23
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Derewenda ZS. On the centennials of the discoveries of the hydrogen bond and the structure of the water molecule: the short life and work of Eustace Jean Cuy (1897-1925). ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES 2021; 77:362-378. [PMID: 34473092 DOI: 10.1107/s2053273321006987] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2021] [Accepted: 07/07/2021] [Indexed: 11/10/2022]
Abstract
The bent structure of the water molecule, and its hydrogen-bonding properties, arguably rank among the most impactful discoveries in the history of chemistry. Although the fact that the H-O-H angle must deviate from linearity was inferred early in the 20th century, notably from the existence of the electric dipole moment, it was not clear what that angle should be and why. One hundred years ago, a young PhD student at the University of California, Berkeley, Eustace J. Cuy, rationalized the V-shape structure of a water molecule using the Lewis theory of a chemical bond, i.e. a shared electron pair, and its tetrahedral stereochemistry. He was inspired, in part, by the proposal of a weak (hydrogen) bond in water by two colleagues at Berkeley, Wendell Latimer and Worth Rodebush, who published their classic paper a year earlier. Cuy went on to suggest that other molecules, notably H2S and NH3, have similar structures, and presciently predicted that this architecture has broader consequences for the structure of water as a liquid. This short, but brilliant paper has been completely forgotten, perhaps due to the tragic death of the author at the age of 28; the hydrogen-bond study is also rarely recognized. One of the most impactful publications on the structure of liquid water, a classic treatise published in 1933 by John Bernal and Ralph Fowler, does not mention either of the two pioneering papers. In this essay, the background for the two discoveries is described, including the brief history of Lewis's research on the nature of the chemical bond, and the history of the discovery of the hydrogen bond, which inspired Cuy to look at the structure of the water molecule. This is - to the best of the author's knowledge - the first biographical sketch of Eustace J. Cuy.
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Affiliation(s)
- Zygmunt S Derewenda
- Department of Molecular Physiology and Biological Physics, University of Virginia School of Medicine, 1340 Jefferson Park Avenue, Charlottesville, Virginia 22903, USA
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24
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Méndez A, Rivera-Valentín EG, Schulze-Makuch D, Filiberto J, Ramírez RM, Wood TE, Dávila A, McKay C, Ceballos KNO, Jusino-Maldonado M, Torres-Santiago NJ, Nery G, Heller R, Byrne PK, Malaska MJ, Nathan E, Simões MF, Antunes A, Martínez-Frías J, Carone L, Izenberg NR, Atri D, Chitty HIC, Nowajewski-Barra P, Rivera-Hernández F, Brown CY, Lynch KL, Catling D, Zuluaga JI, Salazar JF, Chen H, González G, Jagadeesh MK, Haqq-Misra J. Habitability Models for Astrobiology. ASTROBIOLOGY 2021; 21:1017-1027. [PMID: 34382857 DOI: 10.1089/ast.2020.2342] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Habitability has been generally defined as the capability of an environment to support life. Ecologists have been using Habitat Suitability Models (HSMs) for more than four decades to study the habitability of Earth from local to global scales. Astrobiologists have been proposing different habitability models for some time, with little integration and consistency among them, being different in function to those used by ecologists. Habitability models are not only used to determine whether environments are habitable, but they also are used to characterize what key factors are responsible for the gradual transition from low to high habitability states. Here we review and compare some of the different models used by ecologists and astrobiologists and suggest how they could be integrated into new habitability standards. Such standards will help improve the comparison and characterization of potentially habitable environments, prioritize target selections, and study correlations between habitability and biosignatures. Habitability models are the foundation of planetary habitability science, and the synergy between ecologists and astrobiologists is necessary to expand our understanding of the habitability of Earth, the Solar System, and extrasolar planets.
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Affiliation(s)
- Abel Méndez
- Planetary Habitability Laboratory, University of Puerto Rico at Arecibo, Puerto Rico, USA
| | | | - Dirk Schulze-Makuch
- Center for Astronomy and Astrophysics, Technische Universität Berlin, Berlin, Germany; German Research Centre for Geosciences, Section Geomicrobiology, Potsdam, Germany; Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Stechlin, Germany
| | | | - Ramses M Ramírez
- University of Central Florida, Department of Physics, Orlando, Florida, USA; Space Science Institute, Boulder, Colorado, USA
| | - Tana E Wood
- USDA Forest Service International Institute of Tropical Forestry, San Juan, Puerto Rico, USA
| | - Alfonso Dávila
- NASA Ames Research Center, Moffett Field, California, USA
| | - Chris McKay
- NASA Ames Research Center, Moffett Field, California, USA
| | - Kevin N Ortiz Ceballos
- Planetary Habitability Laboratory, University of Puerto Rico at Arecibo, Puerto Rico, USA
| | | | | | | | - René Heller
- Max Planck Institute for Solar System Research; Institute for Astrophysics, University of Göttingen, Germany
| | - Paul K Byrne
- North Carolina State University, Raleigh, North Carolina, USA
| | - Michael J Malaska
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, California, USA
| | - Erica Nathan
- Department of Earth, Environmental and Planetary Sciences, Brown University, Providence, Rhode Island, USA
| | - Marta Filipa Simões
- State Key Laboratory of Lunar and Planetary Sciences, Macau University of Science and Technology, Taipa, Macau SAR, China
| | - André Antunes
- State Key Laboratory of Lunar and Planetary Sciences, Macau University of Science and Technology, Taipa, Macau SAR, China
| | | | | | - Noam R Izenberg
- Johns Hopkins Applied Physics Laboratory, Laurel, Maryland, USA
| | - Dimitra Atri
- Center for Space Science, New York University Abu Dhabi, United Arab Emirates
| | | | | | | | | | - Kennda L Lynch
- Lunar and Planetary Institute, USRA, Houston, Texas, USA
| | | | - Jorge I Zuluaga
- Institute of Physics / FCEN - Universidad de Antioquia, Medellín, Colombia
| | - Juan F Salazar
- GIGA, Escuela Ambiental, Facultad de Ingeniería, Universidad de Antioquia, Medellín, Colombia
| | - Howard Chen
- Northwestern University, Evanston, Illinois, USA
| | - Grizelle González
- USDA Forest Service International Institute of Tropical Forestry, San Juan, Puerto Rico, USA
| | | | - Jacob Haqq-Misra
- Blue Marble Space Institute of Science, Seattle, Washington, USA
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Lingam M. Theoretical Constraints Imposed by Gradient Detection and Dispersal on Microbial Size in Astrobiological Environments. ASTROBIOLOGY 2021; 21:813-830. [PMID: 33902321 DOI: 10.1089/ast.2020.2392] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The capacity to sense gradients efficiently and acquire information about the ambient environment confers many advantages such as facilitating movement toward nutrient sources or away from toxic chemicals. The amplified dispersal evinced by organisms endowed with motility is possibly beneficial in related contexts. Hence, the connections between information acquisition, motility, and microbial size are explored from an explicitly astrobiological standpoint. By using prior theoretical models, the constraints on organism size imposed by gradient detection and motility are elucidated in the form of simple heuristic scaling relations. It is argued that environments such as alkaline hydrothermal vents, which are distinguished by the presence of steep gradients, might be conducive to the existence of "small" microbes (with radii of ≳0.1 μm) in principle, when only the above two factors are considered; other biological functions (e.g., metabolism and genetic exchange) could, however, regulate the lower bound on microbial size and elevate it. The derived expressions are potentially applicable to a diverse array of settings, including those entailing solvents other than water; for example, the lakes and seas of Titan. The article concludes with a brief exposition of how this formalism may be of practical and theoretical value to astrobiology.
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Affiliation(s)
- Manasvi Lingam
- Department of Aerospace, Physics and Space Science, Florida Institute of Technology, Melbourne, Florida, USA
- Institute for Theory and Computation, Harvard University, Cambridge, Massachusetts, USA
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Possibilities for an Aerial Biosphere in Temperate Sub Neptune-Sized Exoplanet Atmospheres. UNIVERSE 2021. [DOI: 10.3390/universe7060172] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
The search for signs of life through the detection of exoplanet atmosphere biosignature gases is gaining momentum. Yet, only a handful of rocky exoplanet atmospheres are suitable for observation with planned next-generation telescopes. To broaden prospects, we describe the possibilities for an aerial, liquid water cloud-based biosphere in the atmospheres of sub Neptune-sized temperate exoplanets, those receiving Earth-like irradiation from their host stars. One such planet is known (K2-18b) and other candidates are being followed up. Sub Neptunes are common and easier to study observationally than rocky exoplanets because of their larger sizes, lower densities, and extended atmospheres or envelopes. Yet, sub Neptunes lack any solid surface as we know it, so it is worthwhile considering whether their atmospheres can support an aerial biosphere. We review, synthesize, and build upon existing research. Passive microbial-like life particles must persist aloft in a region with liquid water clouds for long enough to metabolize, reproduce, and spread before downward transport to lower altitudes that may be too hot for life of any kind to survive. Dynamical studies are needed to flesh out quantitative details of life particle residence times. A sub Neptune would need to be a part of a planetary system with an unstable asteroid belt in order for meteoritic material to provide nutrients, though life would also need to efficiently reuse and recycle metals. The origin of life may be the most severe limiting challenge. Regardless of the uncertainties, we can keep an open mind to the search for biosignature gases as a part of general observational studies of sub Neptune exoplanets.
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Lafarga T, Sánchez‐Zurano A, Morillas‐España A, Acién‐Fernández FG. Extremophile microalgae as feedstock for high‐value carotenoids: A review. Int J Food Sci Technol 2021. [DOI: 10.1111/ijfs.15069] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Tomás Lafarga
- Department of Chemical Engineering University of Almería Almería 04120 Spain
| | - Ana Sánchez‐Zurano
- Department of Chemical Engineering University of Almería Almería 04120 Spain
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Bains W, Petkowski JJ, Zhan Z, Seager S. Evaluating Alternatives to Water as Solvents for Life: The Example of Sulfuric Acid. Life (Basel) 2021; 11:400. [PMID: 33925658 PMCID: PMC8145300 DOI: 10.3390/life11050400] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Revised: 04/21/2021] [Accepted: 04/24/2021] [Indexed: 12/18/2022] Open
Abstract
The chemistry of life requires a solvent, which for life on Earth is water. Several alternative solvents have been suggested, but there is little quantitative analysis of their suitability as solvents for life. To support a novel (non-terrestrial) biochemistry, a solvent must be able to form a stable solution of a diverse set of small molecules and polymers, but must not dissolve all molecules. Here, we analyze the potential of concentrated sulfuric acid (CSA) as a solvent for biochemistry. As CSA is a highly effective solvent but a reactive substance, we focused our analysis on the stability of chemicals in sulfuric acid, using a model built from a database of kinetics of reaction of molecules with CSA. We consider the sulfuric acid clouds of Venus as a test case for this approach. The large majority of terrestrial biochemicals have half-lives of less than a second at any altitude in Venus's clouds, but three sets of human-synthesized chemicals are more stable, with average half-lives of days to weeks at the conditions around 60 km altitude on Venus. We show that sufficient chemical structural and functional diversity may be available among those stable chemicals for life that uses concentrated sulfuric acid as a solvent to be plausible. However, analysis of meteoritic chemicals and possible abiotic synthetic paths suggests that postulated paths to the origin of life on Earth are unlikely to operate in CSA. We conclude that, contrary to expectation, sulfuric acid is an interesting candidate solvent for life, but further work is needed to identify a plausible route for life to originate in it.
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Affiliation(s)
- William Bains
- Department of Earth, Atmospheric, and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; (J.J.P.); (Z.Z.); (S.S.)
- School of Physics & Astronomy, Cardiff University, 4 The Parade, Cardiff CF24 3AA, UK
| | - Janusz Jurand Petkowski
- Department of Earth, Atmospheric, and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; (J.J.P.); (Z.Z.); (S.S.)
| | - Zhuchang Zhan
- Department of Earth, Atmospheric, and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; (J.J.P.); (Z.Z.); (S.S.)
| | - Sara Seager
- Department of Earth, Atmospheric, and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; (J.J.P.); (Z.Z.); (S.S.)
- Department of Physics, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
- Department of Aeronautics and Astronautics, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
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Cockell CS, Wordsworth R, Whiteford N, Higgins PM. Minimum Units of Habitability and Their Abundance in the Universe. ASTROBIOLOGY 2021; 21:481-489. [PMID: 33513037 DOI: 10.1089/ast.2020.2350] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Although the search for habitability is a much-vaunted objective in the study of planetary environments, the material requirements for an environment to be habitable can be met with relatively few ingredients. In this hypothesis paper, the minimum material requirements for habitability are first re-evaluated, necessarily based on life "as we know it." From this vantage point, we explore examples of the minimum number of material requirements for habitable conditions to arise in a planetary environment, which we illustrate with "minimum habitability diagrams." These requirements raise the hypothesis that habitable conditions may be common throughout the universe. If the hypothesis was accepted, then the discovery of life would remain an important discovery, but habitable conditions on their own would be an unremarkable feature of the material universe. We discuss how minimum units of habitability provide a parsimonious way to consider the minimum number of geological inferences about a planetary body, and the minimum number of atmospheric components that must be measured, for example in the case of exoplanets, to be able to make assessments of habitability.
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Affiliation(s)
- Charles S Cockell
- UK Centre for Astrobiology, School of Physics and Astronomy, University of Edinburgh, Edinburgh, UK
| | - Robin Wordsworth
- Department of Earth and Planetary Sciences, Harvard University, Cambridge, Massachusetts, USA
| | - Niall Whiteford
- Institute for Astronomy, Royal Observatory, Blackford Hill, Edinburgh, UK
| | - Peter M Higgins
- UK Centre for Astrobiology, School of Physics and Astronomy, University of Edinburgh, Edinburgh, UK
- Institute for Astronomy, Royal Observatory, Blackford Hill, Edinburgh, UK
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Higgins PM, Cockell CS. A bioenergetic model to predict habitability, biomass and biosignatures in astrobiology and extreme conditions. J R Soc Interface 2020; 17:20200588. [PMID: 33081642 PMCID: PMC7653372 DOI: 10.1098/rsif.2020.0588] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2020] [Accepted: 09/24/2020] [Indexed: 12/23/2022] Open
Abstract
In order to grow, reproduce and evolve life requires a supply of energy and nutrients. Astrobiology has the challenge of studying life on Earth in environments which are poorly characterized or extreme, usually both, and predicting the habitability of extraterrestrial environments. We have developed a general astrobiological model for assessing the energetic and nutrient availability of poorly characterized environments to predict their potential biological productivity. NutMEG (nutrients, maintenance, energy and growth) can be used to estimate how much biomass an environment could host, and how that life might affect the local chemistry. It requires only an overall catabolic reaction and some knowledge of the local environment to begin making estimations, with many more customizable parameters, such as microbial adaptation. In this study, the model was configured to replicate laboratory data on the growth of methanogens. It was used to predict the effect of temperature and energy/nutrient limitation on their microbial growth rates, total biomass levels, and total biosignature production in laboratory-like conditions to explore how it could be applied to astrobiological problems. As temperature rises from 280 to 330 K, NutMEG predicts exponential drops in final biomass ([Formula: see text]) and total methane production ([Formula: see text]) despite an increase in peak growth rates ([Formula: see text]) for a typical methanogen in ideal conditions. This is caused by the increasing cost of microbial maintenance diverting energy away from growth processes. Restricting energy and nutrients exacerbates this trend. With minimal assumptions NutMEG can reliably replicate microbial growth behaviour, but better understanding of the synthesis and maintenance costs life must overcome in different extremes is required to improve its results further. NutMEG can help us assess the theoretical habitability of extraterrestrial environments and predict potential biomass and biosignature production, for example on exoplanets using minimum input parameters to guide observations.
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Affiliation(s)
- P. M. Higgins
- UK Centre for Astrobiology, School of Physics and Astronomy, University of Edinburgh, Edinburgh, UK
| | - C. S. Cockell
- UK Centre for Astrobiology, School of Physics and Astronomy, University of Edinburgh, Edinburgh, UK
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Amalfitano S, Levantesi C, Copetti D, Stefani F, Locantore I, Guarnieri V, Lobascio C, Bersani F, Giacosa D, Detsis E, Rossetti S. Water and microbial monitoring technologies towards the near future space exploration. WATER RESEARCH 2020; 177:115787. [PMID: 32315899 DOI: 10.1016/j.watres.2020.115787] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2019] [Revised: 03/31/2020] [Accepted: 04/01/2020] [Indexed: 06/11/2023]
Abstract
Space exploration is demanding longer lasting human missions and water resupply from Earth will become increasingly unrealistic. In a near future, the spacecraft water monitoring systems will require technological advances to promptly identify and counteract contingent events of waterborne microbial contamination, posing health risks to astronauts with lowered immune responsiveness. The search for bio-analytical approaches, alternative to those applied on Earth by cultivation-dependent methods, is pushed by the compelling need to limit waste disposal and avoid microbial regrowth from analytical carryovers. Prospective technologies will be selected only if first validated in a flight-like environment, by following basic principles, advantages, and limitations beyond their current applications on Earth. Starting from the water monitoring activities applied on the International Space Station, we provide a critical overview of the nucleic acid amplification-based approaches (i.e., loop-mediated isothermal amplification, quantitative PCR, and high-throughput sequencing) and early-warning methods for total microbial load assessments (i.e., ATP-metry, flow cytometry), already used at a high readiness level aboard crewed space vehicles. Our findings suggest that the forthcoming space applications of mature technologies will be necessarily bounded by a compromise between analytical performances (e.g., speed to results, identification depth, reproducibility, multiparametricity) and detrimental technical requirements (e.g., reagent usage, waste production, operator skills, crew time). As space exploration progresses toward extended missions to Moon and Mars, miniaturized systems that also minimize crew involvement in their end-to-end operation are likely applicable on the long-term and suitable for the in-flight water and microbiological research.
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Affiliation(s)
- Stefano Amalfitano
- Water Research Institute - National Research Council of Italy (IRSA-CNR), Via Salaria Km 29,300, 00015, Monterotondo, Roma, Italy.
| | - Caterina Levantesi
- Water Research Institute - National Research Council of Italy (IRSA-CNR), Via Salaria Km 29,300, 00015, Monterotondo, Roma, Italy
| | - Diego Copetti
- Water Research Institute - National Research Council of Italy (IRSA-CNR), Via del Mulino 19, 20861, Brugherio, Monza-Brianza, Italy
| | - Fabrizio Stefani
- Water Research Institute - National Research Council of Italy (IRSA-CNR), Via del Mulino 19, 20861, Brugherio, Monza-Brianza, Italy
| | - Ilaria Locantore
- Thales Alenia Space Italia SpA, Strada Antica di Collegno, 253 - 10146, Turin, Italy
| | - Vincenzo Guarnieri
- Thales Alenia Space Italia SpA, Strada Antica di Collegno, 253 - 10146, Turin, Italy
| | - Cesare Lobascio
- Thales Alenia Space Italia SpA, Strada Antica di Collegno, 253 - 10146, Turin, Italy
| | - Francesca Bersani
- Centro Ricerche SMAT, Società Metropolitana Acque Torino S.p.A., C.so Unità d'Italia 235/3, 10127, Torino, Italy
| | - Donatella Giacosa
- Centro Ricerche SMAT, Società Metropolitana Acque Torino S.p.A., C.so Unità d'Italia 235/3, 10127, Torino, Italy
| | - Emmanouil Detsis
- European Science Foundation, 1 quai Lezay Marnésia, BP 90015, 67080, Strasbourg Cedex, France
| | - Simona Rossetti
- Water Research Institute - National Research Council of Italy (IRSA-CNR), Via Salaria Km 29,300, 00015, Monterotondo, Roma, Italy
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Martínez-Espinosa RM. Microorganisms and Their Metabolic Capabilities in the Context of the Biogeochemical Nitrogen Cycle at Extreme Environments. Int J Mol Sci 2020; 21:ijms21124228. [PMID: 32545812 PMCID: PMC7349289 DOI: 10.3390/ijms21124228] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2020] [Accepted: 06/12/2020] [Indexed: 12/23/2022] Open
Abstract
Extreme microorganisms (extremophile) are organisms that inhabit environments characterized by inhospitable parameters for most live beings (extreme temperatures and pH values, high or low ionic strength, pressure, or scarcity of nutrients). To grow optimally under these conditions, extremophiles have evolved molecular adaptations affecting their physiology, metabolism, cell signaling, etc. Due to their peculiarities in terms of physiology and metabolism, they have become good models for (i) understanding the limits of life on Earth, (ii) exploring the possible existence of extraterrestrial life (Astrobiology), or (iii) to look for potential applications in biotechnology. Recent research has revealed that extremophilic microbes play key roles in all biogeochemical cycles on Earth. Nitrogen cycle (N-cycle) is one of the most important biogeochemical cycles in nature; thanks to it, nitrogen is converted into multiple chemical forms, which circulate among atmospheric, terrestrial and aquatic ecosystems. This review summarizes recent knowledge on the role of extreme microorganisms in the N-cycle in extremophilic ecosystems, with special emphasis on members of the Archaea domain. Potential implications of these microbes in global warming and nitrogen balance, as well as their biotechnological applications are also discussed.
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Affiliation(s)
- Rosa María Martínez-Espinosa
- Biochemistry and Molecular Biology Division, Agrochemistry and Biochemistry Department, Faculty of Sciences, University of Alicante, Ap. 99, E-03080 Alicante, Spain; ; Tel.: +34-965903400 (ext. 1258)
- Multidisciplinary Institute for Environmental Studies “Ramón Margalef”, University of Alicante, Ap. 99, E-03080 Alicante, Spain
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Malavasi V, Soru S, Cao G. Extremophile Microalgae: the potential for biotechnological application. JOURNAL OF PHYCOLOGY 2020; 56:559-573. [PMID: 31917871 DOI: 10.1111/jpy.12965] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2019] [Accepted: 11/26/2019] [Indexed: 05/18/2023]
Abstract
Microalgae are photosynthetic microorganisms that use sunlight as an energy source, and convert water, carbon dioxide, and inorganic salts into algal biomass. The isolation and selection of microalgae, which allow one to obtain large amounts of biomass and valuable compounds, is a prerequisite for their successful industrial production. This work provides an overview of extremophile algae, where their ability to grow under harsh conditions and the corresponding accumulation of metabolites are addressed. Emphasis is placed on the high-value products of some prominent algae. Moreover, the most recent applications of these microorganisms and their potential exploitation in the context of astrobiology are taken into account.
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Affiliation(s)
- Veronica Malavasi
- Interdepartmental Center of Environmental Science and Engineering (CINSA), University of Cagliari, Via San Giorgio 12, 09124, Cagliari, Italy
| | - Santina Soru
- Interdepartmental Center of Environmental Science and Engineering (CINSA), University of Cagliari, Via San Giorgio 12, 09124, Cagliari, Italy
| | - Giacomo Cao
- Interdepartmental Center of Environmental Science and Engineering (CINSA), University of Cagliari, Via San Giorgio 12, 09124, Cagliari, Italy
- Department of Mechanical, Chemical and Materials Engineering, University of Cagliari, Via Marengo 2, 09123, Cagliari, Italy
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Kashyap Jagadeesh M, Rao Valluri S, Kari V, Kubska K, Kaczmarek Ł. Indexing Exoplanets with Physical Conditions Potentially Suitable for Rock-Dependent Extremophiles. Life (Basel) 2020; 10:life10020010. [PMID: 31991857 PMCID: PMC7175269 DOI: 10.3390/life10020010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2019] [Revised: 01/18/2020] [Accepted: 01/21/2020] [Indexed: 11/30/2022] Open
Abstract
The search for different life forms elsewhere in the universe is a fascinating area of research in astrophysics and astrobiology. Currently, according to the NASA Exoplanet Archive database, 3876 exoplanets have been discovered. The Earth Similarity Index (ESI) is defined as the geometric mean of radius, density, escape velocity, and surface temperature and ranges from 0 (dissimilar to Earth) to 1 (similar to Earth). The ESI was created to index exoplanets on the basis of their similarity to Earth. In this paper, we examined rocky exoplanets whose physical conditions are potentially suitable for the survival of rock-dependent extremophiles, such as the cyanobacteria Chroococcidiopsis and the lichen Acarospora. The Rock Similarity Index (RSI) is first introduced and then applied to 1659 rocky exoplanets. The RSI represents a measure for Earth-like planets on which physical conditions are potentially suitable for rocky extremophiles that can survive in Earth-like extreme habitats (i.e., hot deserts and cold, frozen lands).
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Affiliation(s)
- Madhu Kashyap Jagadeesh
- Department of Physics, Christ (Deemed to be university), Bengaluru, Karnataka 560029, India
- Correspondence:
| | - Sagarika Rao Valluri
- Department of Electronics and Communication, RNSIT, Bengaluru, Karnataka 560098, India;
| | - Vani Kari
- Department of Biotechnology, Sri Jayachamarajendra College of Engineering, Mysuru, Karnataka 570006, India;
| | - Katarzyna Kubska
- Department of Animal Taxonomy and Ecology, Faculty of Biology, Adam Mickiewicz University, Uniwersytetu Poznańskiego 6, Poznań 61-614, Poland; (K.K.)
| | - Łukasz Kaczmarek
- Department of Animal Taxonomy and Ecology, Faculty of Biology, Adam Mickiewicz University, Uniwersytetu Poznańskiego 6, Poznań 61-614, Poland; (K.K.)
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Abstract
Lower heating of our planet by the young Sun was compensated by higher warming from factors such as greater greenhouse gas concentrations or reduced albedo. Earth's climate history has therefore been one of increasing solar forcing through time roughly cancelled by decreasing forcing due to geological and biological processes. The current generation of coupled carbon-cycle/climate models suggests that decreasing geological forcing-due to falling rates of outgassing, continent growth, and plate spreading-can account for much of Earth's climate history. If Earth-like planets orbiting in the habitable zone of red dwarfs experience a similar history of decreasing geological forcing, their climates will cool at a faster rate than is compensated for by the relatively slow evolution of their smaller stars. As a result, they will become globally glaciated within a few billion years. The results of this paper therefore suggest that coupled carbon-cycle/climate models account, parsimoniously, for both the faint young Sun paradox and the puzzle of why Earth orbits a relatively rare and short-lived star-type.
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Affiliation(s)
- David Waltham
- Department of Earth Sciences, Royal Holloway, Egham, UK
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Belilla J, Moreira D, Jardillier L, Reboul G, Benzerara K, López-García JM, Bertolino P, López-Archilla AI, López-García P. Hyperdiverse archaea near life limits at the polyextreme geothermal Dallol area. Nat Ecol Evol 2019; 3:1552-1561. [PMID: 31666740 PMCID: PMC6837875 DOI: 10.1038/s41559-019-1005-0] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2019] [Accepted: 09/16/2019] [Indexed: 11/13/2022]
Abstract
Microbial life has adapted to various individual extreme conditions; yet, organisms simultaneously adapted to very low pH, high salt and high temperature are unknown. We combined environmental 16S/18S rRNA-gene metabarcoding, cultural approaches, fluorescence-activated cell sorting, scanning electron microscopy and chemical analyses to study samples along such unique polyextreme gradients in the Dallol-Danakil area (Ethiopia). We identify two physicochemical barriers to life in the presence of surface liquid water defined by: i) high chaotropicity-low water activity in Mg2+/Ca2+-dominated brines and ii) hyperacidity-salt combinations (pH~0/NaCl-dominated salt-saturation). When detected, life was dominated by highly diverse ultrasmall archaea widely distributed across phyla with and without previously known halophilic members. We hypothesize that high cytoplasmic K+-level was an original archaeal adaptation to hyperthermophily, subsequently exapted during multiple transitions to extreme halophily. We detect active silica encrustment/fossilization of cells but also abiotic biomorphs of varied chemistry. Our work helps circumscribing habitability and calls for cautionary interpretations of morphological biosignatures on Earth and beyond.
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Affiliation(s)
- Jodie Belilla
- Ecologie Systématique Evolution, CNRS, Université Paris-Sud, Université Paris-Saclay, AgroParisTech, Orsay, France
| | - David Moreira
- Ecologie Systématique Evolution, CNRS, Université Paris-Sud, Université Paris-Saclay, AgroParisTech, Orsay, France
| | - Ludwig Jardillier
- Ecologie Systématique Evolution, CNRS, Université Paris-Sud, Université Paris-Saclay, AgroParisTech, Orsay, France
| | - Guillaume Reboul
- Ecologie Systématique Evolution, CNRS, Université Paris-Sud, Université Paris-Saclay, AgroParisTech, Orsay, France
| | - Karim Benzerara
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie, CNRS, Sorbonne Université, Muséum National d'Histoire Naturelle, Paris, France
| | | | - Paola Bertolino
- Ecologie Systématique Evolution, CNRS, Université Paris-Sud, Université Paris-Saclay, AgroParisTech, Orsay, France
| | | | - Purificación López-García
- Ecologie Systématique Evolution, CNRS, Université Paris-Sud, Université Paris-Saclay, AgroParisTech, Orsay, France.
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The Equation of State of MH-III: A Possible Deep CH4 Reservoir in Titan, Super-Titan Exoplanets, and Moons. ACTA ACUST UNITED AC 2019. [DOI: 10.3847/1538-4357/ab2f76] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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39
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Billi D, Staibano C, Verseux C, Fagliarone C, Mosca C, Baqué M, Rabbow E, Rettberg P. Dried Biofilms of Desert Strains of Chroococcidiopsis Survived Prolonged Exposure to Space and Mars-like Conditions in Low Earth Orbit. ASTROBIOLOGY 2019; 19:1008-1017. [PMID: 30741568 DOI: 10.1089/ast.2018.1900] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Dried biofilms and dried multilayered planktonic counterparts obtained from three desert strains of Chroococcidiopsis were exposed to low Earth conditions by using the EXPOSE-R2 facility outside the International Space Station. During the space mission, samples in Tray 1 (space vacuum and solar radiation, from λ ≈ 110 nm) and Tray 2 (Mars-like UV flux, λ > 200 nm and Mars-like atmosphere) received total UV (200-400 nm) fluences of about 4.58 × 102 kJ/m2 and 4.92 × 102 kJ/m2, respectively, and 0.5 Gy of cosmic ionizing radiation. Postflight analyses were performed on 2.5-year-old samples due to the space mission duration, from launch to sample return to the lab. The occurrence of survivors was determined by evaluating cell division upon rehydration and damage to the genome and photosynthetic apparatus by polymerase chain reaction-stop assays and confocal laser scanning microscopy. Biofilms recovered better than their planktonic counterparts, accumulating less damage not only when exposed to UV radiation under space and Mars-like conditions but also when exposed in dark conditions to low Earth conditions and laboratory control conditions. This suggests that, despite the shielding provided by top-cell layers being sufficient for a certain degree of survival of the multilayered planktonic samples, the enhanced survival of biofilms was due to the presence of abundant extracellular polymeric substances and to additional features acquired upon drying.
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Affiliation(s)
- Daniela Billi
- 1University of Rome Tor Vergata, Department of Biology, Rome, Italy
| | - Clelia Staibano
- 1University of Rome Tor Vergata, Department of Biology, Rome, Italy
| | - Cyprien Verseux
- 1University of Rome Tor Vergata, Department of Biology, Rome, Italy
| | | | - Claudia Mosca
- 1University of Rome Tor Vergata, Department of Biology, Rome, Italy
| | - Mickael Baqué
- 2German Aerospace Center (DLR), Institute of Planetary Research, Management and Infrastructure, Astrobiological Laboratories Research Group, Berlin, Germany
| | - Elke Rabbow
- 3German Aerospace Center (DLR), Institute of Aerospace Medicine, Cologne, Germany
| | - Petra Rettberg
- 3German Aerospace Center (DLR), Institute of Aerospace Medicine, Cologne, Germany
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Merino N, Aronson HS, Bojanova DP, Feyhl-Buska J, Wong ML, Zhang S, Giovannelli D. Living at the Extremes: Extremophiles and the Limits of Life in a Planetary Context. Front Microbiol 2019; 10:780. [PMID: 31037068 PMCID: PMC6476344 DOI: 10.3389/fmicb.2019.00780] [Citation(s) in RCA: 218] [Impact Index Per Article: 43.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2019] [Accepted: 03/27/2019] [Indexed: 01/21/2023] Open
Abstract
Prokaryotic life has dominated most of the evolutionary history of our planet, evolving to occupy virtually all available environmental niches. Extremophiles, especially those thriving under multiple extremes, represent a key area of research for multiple disciplines, spanning from the study of adaptations to harsh conditions, to the biogeochemical cycling of elements. Extremophile research also has implications for origin of life studies and the search for life on other planetary and celestial bodies. In this article, we will review the current state of knowledge for the biospace in which life operates on Earth and will discuss it in a planetary context, highlighting knowledge gaps and areas of opportunity.
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Affiliation(s)
- Nancy Merino
- Department of Earth Sciences, University of Southern California, Los Angeles, CA, United States.,Earth-Life Science Institute, Tokyo Institute of Technology, Tokyo, Japan.,Biosciences and Biotechnology Division, Physical and Life Sciences Directorate, Lawrence Livermore National Lab, Livermore, CA, United States
| | - Heidi S Aronson
- Department of Biology, University of Southern California, Los Angeles, CA, United States
| | - Diana P Bojanova
- Department of Earth Sciences, University of Southern California, Los Angeles, CA, United States
| | - Jayme Feyhl-Buska
- Department of Earth Sciences, University of Southern California, Los Angeles, CA, United States
| | - Michael L Wong
- Department of Astronomy - Astrobiology Program, University of Washington, Seattle, WA, United States.,NASA Astrobiology Institute's Virtual Planetary Laboratory, University of Washington, Seattle, WA, United States
| | - Shu Zhang
- Section of Infection and Immunity, Herman Ostrow School of Dentistry of USC, University of Southern California, Los Angeles, CA, United States
| | - Donato Giovannelli
- Earth-Life Science Institute, Tokyo Institute of Technology, Tokyo, Japan.,Department of Biology, University of Naples "Federico II", Naples, Italy.,Department of Marine and Coastal Science, Rutgers, The State University of New Jersey, New Brunswick, NJ, United States.,Institute for Biological Resources and Marine Biotechnology, National Research Council of Italy, Ancona, Italy
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41
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Warren-Rhodes KA, Lee KC, Archer SDJ, Cabrol N, Ng-Boyle L, Wettergreen D, Zacny K, Pointing SB. Subsurface Microbial Habitats in an Extreme Desert Mars-Analog Environment. Front Microbiol 2019; 10:69. [PMID: 30873126 PMCID: PMC6403490 DOI: 10.3389/fmicb.2019.00069] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2018] [Accepted: 01/15/2019] [Indexed: 02/03/2023] Open
Abstract
Sediments in the hyper-arid core of the Atacama Desert are a terrestrial analog to Mars regolith. Understanding the distribution and drivers of microbial life in the sediment may give critical clues on how to search for biosignatures on Mars. Here, we identify the spatial distribution of highly specialized bacterial communities in previously unexplored depth horizons of subsurface sediments to a depth of 800 mm. We deployed an autonomous rover in a mission-relevant Martian drilling scenario with manual sample validation. Subsurface communities were delineated by depth related to sediment moisture. Geochemical analysis indicated soluble salts and minerology that influenced water bio-availability, particularly in deeper sediments. Colonization was also patchy and uncolonized sediment was associated with indicators of extreme osmotic challenge. The study identifies linkage between biocomplexity, moisture and geochemistry in Mars-like sediments at the limit of habitability and demonstrates feasibility of the rover-mounted drill for future Mars sample recovery.
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Affiliation(s)
- Kimberley A Warren-Rhodes
- NASA Ames Research Center, Mountain View, CA, United States.,The SETI Institute, Mountain View, CA, United States
| | - Kevin C Lee
- School of Sciences, Auckland University of Technology, Auckland, New Zealand
| | - Stephen D J Archer
- School of Sciences, Auckland University of Technology, Auckland, New Zealand
| | - Nathalie Cabrol
- NASA Ames Research Center, Mountain View, CA, United States.,The SETI Institute, Mountain View, CA, United States
| | - Linda Ng-Boyle
- College of Engineering, University of Washington, Seattle, WA, United States
| | - David Wettergreen
- Institute of Robotics, Carnegie Mellon University, Pittsburgh, PA, United States
| | - Kris Zacny
- Honeybee Robotics Spacecraft Mechanisms Corp., Pasadena, CA, United States
| | - Stephen B Pointing
- Yale-NUS College, National University of Singapore, Singapore, Singapore.,Department of Biological Sciences, National University of Singapore, Singapore, Singapore
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42
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Abstract
The existence of exoplanets orbiting low mass-stars is one of the most significant discoveries of our time. Especially intriguing to us is the possibility that Earth-sized exoplanets within a habitable zone might harbor life-forms that resemble our own RNA/DNA-based species. We further narrow this theoretical possibility with the following question: if alien life does indeed exist elsewhere, would extraterrestrial life be burdened with earthly diseases? Given that the chemistry of the universe is subject to specific rules, restraints, and predictable outcomes, we argue that cancer-signaling pathways might be programmed into the life cycle of habitable exoplanets. This hypothetical prediction is also based on evolutionary convergence, the repeated emergence of biological similarity that occurs when disparate life-forms adapt to comparable selection pressures. The possibility that mutations and nucleotide base rearrangements that drive cancer growth might be fixed in the chemical hardware of alien life provides us with the opportunity to wonder and consider the origins, evolution, and ubiquity of disease beyond Earth.
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Affiliation(s)
| | | | - Joerg R Leheste
- Epidemiology and Public Health, Minnesota College of Osteopathic Medicine, Gaylord, USA
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43
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Conway EK, Kyuberis AA, Polyansky OL, Tennyson J, Zobov NF. A highly accurate ab initio dipole moment surface for the ground electronic state of water vapour for spectra extending into the ultraviolet. J Chem Phys 2018; 149:084307. [DOI: 10.1063/1.5043545] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023] Open
Affiliation(s)
- Eamon K. Conway
- Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, United Kingdom
- Atomic and Molecular Physics Division, Harvard-Smithsonian Center for Astrophysics, Cambridge, Massachusetts 02138, USA
| | - Aleksandra A. Kyuberis
- Institute of Applied Physics, Russian Academy of Sciences, Uljanov Street 46, Nizhniy Novgorod 603950, Russia
| | - Oleg L. Polyansky
- Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, United Kingdom
- Institute of Applied Physics, Russian Academy of Sciences, Uljanov Street 46, Nizhniy Novgorod 603950, Russia
| | - Jonathan Tennyson
- Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, United Kingdom
| | - Nikolai F. Zobov
- Institute of Applied Physics, Russian Academy of Sciences, Uljanov Street 46, Nizhniy Novgorod 603950, Russia
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44
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Solon AJ, Vimercati L, Darcy JL, Arán P, Porazinska D, Dorador C, Farías ME, Schmidt SK. Microbial Communities of High-Elevation Fumaroles, Penitentes, and Dry Tephra "Soils" of the Puna de Atacama Volcanic Zone. MICROBIAL ECOLOGY 2018; 76:340-351. [PMID: 29305629 DOI: 10.1007/s00248-017-1129-1] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2017] [Accepted: 12/12/2017] [Indexed: 06/07/2023]
Abstract
The aim of this study was to understand the spatial distribution of microbial communities (18S and 16S rRNA genes) across one of the harshest terrestrial landscapes on Earth. We carried out Illumina sequencing using samples from two expeditions to the high slopes (up to 6050 m.a.s.l.) of Volcán Socompa and Llullaillaco to describe the microbial communities associated with the extremely dry tephra compared to areas that receive water from fumaroles and ice fields made up of nieves penitentes. There were strong spatial patterns relative to these landscape features with the most diverse (alpha diversity) communities being associated with fumaroles. Penitentes did not significantly increase alpha diversity compared to dry tephra at the same elevation (5825 m.a.s.l.) on Volcán Socompa, but the structure of the 18S community (beta diversity) was significantly affected by the presence of penitentes on both Socompa and Llullaillaco. In addition, the 18S community was significantly different in tephra wetted by penitentes versus dry tephra sites across many elevations on Llullaillaco. Traditional phototrophs (algae and cyanobacteria) were abundant in wetter tephra associated with fumaroles, and algae (but not cyanobacteria) were common in tephra associated with penitentes. Dry tephra had neither algae nor cyanobacteria but did host potential phototrophs in the Rhodospirillales on Volcán Llullaillaco, but not on Socompa. These results provide new insights into the distribution of microbes across one of the most extreme terrestrial environments on Earth and provide the first ever glimpse of life associated with nieves penitentes, spire-shaped ice structures that are widespread across the mostly unexplored high-elevation Andean Central Volcanic Zone.
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Affiliation(s)
- Adam J Solon
- Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, 80309, USA
| | - Lara Vimercati
- Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, 80309, USA
| | - J L Darcy
- Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, 80309, USA
| | - Pablo Arán
- Laboratorio de Complejidad Microbiana y Ecología Funcional, Instituto Antofagasta & Centre for Biotechnology and Bioengineering (CeBiB), Universidad de Antofagasta, Antofagasta, Chile
- Departamento de Biotecnología, Facultad de Ciencias del Mar y Recursos Biológicos, Universidad de Antofagasta, Antofagasta, Chile
| | - Dorota Porazinska
- Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, 80309, USA
| | - C Dorador
- Laboratorio de Complejidad Microbiana y Ecología Funcional, Instituto Antofagasta & Centre for Biotechnology and Bioengineering (CeBiB), Universidad de Antofagasta, Antofagasta, Chile
- Departamento de Biotecnología, Facultad de Ciencias del Mar y Recursos Biológicos, Universidad de Antofagasta, Antofagasta, Chile
| | - M E Farías
- Laboratorio de Investigaciones Microbiológicas de Lagunas Andinas, PROIMI, Tucumán, Argentina
| | - S K Schmidt
- Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, 80309, USA.
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45
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Abstract
The habitable zone (HZ) is the circular region around a star(s) where standing bodies of water could exist on the surface of a rocky planet. Space missions employ the HZ to select promising targets for follow-up habitability assessment. The classical HZ definition assumes that the most important greenhouse gases for habitable planets orbiting main-sequence stars are CO2 and H2O. Although the classical HZ is an effective navigational tool, recent HZ formulations demonstrate that it cannot thoroughly capture the diversity of habitable exoplanets. Here, I review the planetary and stellar processes considered in both classical and newer HZ formulations. Supplementing the classical HZ with additional considerations from these newer formulations improves our capability to filter out worlds that are unlikely to host life. Such improved HZ tools will be necessary for current and upcoming missions aiming to detect and characterize potentially habitable exoplanets.
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46
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Hand K, Yates E. Terahertz: dictating the frequency of life. Do macromolecular vibrational modes impose thermal limitations on terrestrial life? J R Soc Interface 2018; 14:rsif.2017.0673. [PMID: 29142018 DOI: 10.1098/rsif.2017.0673] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2017] [Accepted: 10/25/2017] [Indexed: 11/12/2022] Open
Abstract
Conditions on exoplanets include elevated temperatures and pressures. The response of carbon-based biological macromolecules to such conditions is then relevant to the viability of life. The capacity of proteins and ribozymes to catalyse reactions or bind receptors, and nucleic acids to convey information, depends on them sampling different conformational states. These are determined by macromolecular vibrational states, or phonon modes, accessible using terahertz (THz: 1012Hz) absorption spectroscopy. THz spectra of biological macromolecules exhibit broad absorption at approximately 6 THz (equating to approx. 280 K) corresponding to dense transitions between phonon modes. There are also troughs at approximately 10 THz (approx. 500 K) implying diminishing numbers of available conformational states at higher temperatures; hence, fewer routes by which biochemical processes can be realized, as equilibrium is approached. Could this conformational bottleneck hinder the operation of biological macromolecules at higher temperatures? We suggest that the troughs at approximately 10 THz in absorbance spectra indicate that the hydrogen bonds, charge interactions and geometry of biological macromolecules associated with terrestrial life impose fundamental vibrational properties that could limit the upper temperature at which they may function.
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Affiliation(s)
- Kieran Hand
- Department of Biochemistry, Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK
| | - Edwin Yates
- Department of Biochemistry, Institute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, UK
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47
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Meslier V, Casero MC, Dailey M, Wierzchos J, Ascaso C, Artieda O, McCullough PR, DiRuggiero J. Fundamental drivers for endolithic microbial community assemblies in the hyperarid Atacama Desert. Environ Microbiol 2018; 20:1765-1781. [DOI: 10.1111/1462-2920.14106] [Citation(s) in RCA: 58] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2017] [Accepted: 03/15/2018] [Indexed: 11/30/2022]
Affiliation(s)
- Victoria Meslier
- Department of BiologyThe Johns Hopkins UniversityBaltimore MD USA
| | | | - Micah Dailey
- Department of BiologyThe Johns Hopkins UniversityBaltimore MD USA
| | | | - Carmen Ascaso
- Museo Nacional de Ciencias Naturales, CSICMadrid Spain
| | - Octavio Artieda
- Departamento Biologica Vegetal, Ecologia y ciencias de la TierraUniversidad de ExtremaduraPlasencia Spain
| | - P. R. McCullough
- Department of Physics and AstronomyThe Johns Hopkins UniversityBaltimore MD USA
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48
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Hydrogen Bonds and Life in the Universe. Life (Basel) 2018; 8:life8010001. [PMID: 29301382 PMCID: PMC5871933 DOI: 10.3390/life8010001] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2017] [Revised: 12/18/2017] [Accepted: 12/18/2017] [Indexed: 11/17/2022] Open
Abstract
The scientific community is allocating more and more resources to space missions and astronomical observations dedicated to the search for life beyond Earth. This experimental endeavor needs to be backed by a theoretical framework aimed at defining universal criteria for the existence of life. With this aim in mind, we have explored which chemical and physical properties should be expected for life possibly different from the terrestrial one, but similarly sustained by genetic and catalytic molecules. We show that functional molecules performing genetic and catalytic tasks must feature a hierarchy of chemical interactions operating in distinct energy bands. Of all known chemical bonds and forces, only hydrogen bonds are able to mediate the directional interactions of lower energy that are needed for the operation of genetic and catalytic tasks. For this reason and because of the unique quantum properties of hydrogen bonding, the functional molecules involved in life processes are predicted to have extensive hydrogen-bonding capabilities. A molecular medium generating a hydrogen-bond network is probably essential to support the activity of the functional molecules. These hydrogen-bond requirements constrain the viability of hypothetical biochemistries alternative to the terrestrial one, provide thermal limits to life molecular processes, and offer a conceptual framework to define a transition from a “covalent-bond stage” to a “hydrogen-bond stage” in prebiotic chemistry.
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49
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Balbi A, Tombesi F. The habitability of the Milky Way during the active phase of its central supermassive black hole. Sci Rep 2017; 7:16626. [PMID: 29192275 PMCID: PMC5709466 DOI: 10.1038/s41598-017-16110-0] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2017] [Accepted: 11/03/2017] [Indexed: 12/05/2022] Open
Abstract
During the peak of their accretion phase, supermassive black holes in galactic cores are known to emit very high levels of ionizing radiation, becoming visible over intergalactic distances as quasars or active galactic nuclei (AGN). Here, we quantify the extent to which the activity of the supermassive black hole at the center of the Milky Way, known as Sagittarius A* (Sgr A*), may have affected the habitability of Earth-like planets in our Galaxy. We focus on the amount of atmospheric loss and on the possible biological damage suffered by planets exposed to X-ray and extreme ultraviolet (XUV) radiation produced during the peak of the active phase of Sgr A*. We find that terrestrial planets could lose a total atmospheric mass comparable to that of present day Earth even at large distances (~1 kiloparsec) from the galactic center. Furthermore, we find that the direct biological damage caused by Sgr A* to surface life on planets not properly screened by an atmosphere was probably significant during the AGN phase, possibly hindering the development of complex life within a few kiloparsecs from the galactic center.
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Affiliation(s)
- Amedeo Balbi
- Dipartimento di Fisica, Università degli Studi di Roma "Tor Vergata", Via della Ricerca Scientifica, 00133, Roma, Italy.
| | - Francesco Tombesi
- Dipartimento di Fisica, Università degli Studi di Roma "Tor Vergata", Via della Ricerca Scientifica, 00133, Roma, Italy
- Department of Astronomy, University of Maryland, College Park, MD 20742, USA
- NASA/Goddard Space Flight Center, Code 662, Greenbelt, MD 20771, USA
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50
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Karouia F, Peyvan K, Pohorille A. Toward biotechnology in space: High-throughput instruments for in situ biological research beyond Earth. Biotechnol Adv 2017; 35:905-932. [PMID: 28433608 DOI: 10.1016/j.biotechadv.2017.04.003] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2016] [Revised: 03/27/2017] [Accepted: 04/12/2017] [Indexed: 12/18/2022]
Abstract
Space biotechnology is a nascent field aimed at applying tools of modern biology to advance our goals in space exploration. These advances rely on our ability to exploit in situ high throughput techniques for amplification and sequencing DNA, and measuring levels of RNA transcripts, proteins and metabolites in a cell. These techniques, collectively known as "omics" techniques have already revolutionized terrestrial biology. A number of on-going efforts are aimed at developing instruments to carry out "omics" research in space, in particular on board the International Space Station and small satellites. For space applications these instruments require substantial and creative reengineering that includes automation, miniaturization and ensuring that the device is resistant to conditions in space and works independently of the direction of the gravity vector. Different paths taken to meet these requirements for different "omics" instruments are the subjects of this review. The advantages and disadvantages of these instruments and technological solutions and their level of readiness for deployment in space are discussed. Considering that effects of space environments on terrestrial organisms appear to be global, it is argued that high throughput instruments are essential to advance (1) biomedical and physiological studies to control and reduce space-related stressors on living systems, (2) application of biology to life support and in situ resource utilization, (3) planetary protection, and (4) basic research about the limits on life in space. It is also argued that carrying out measurements in situ provides considerable advantages over the traditional space biology paradigm that relies on post-flight data analysis.
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Affiliation(s)
- Fathi Karouia
- University of California San Francisco, Department of Pharmaceutical Chemistry, San Francisco, CA 94158, USA; NASA Ames Research Center, Exobiology Branch, MS239-4, Moffett Field, CA 94035, USA; NASA Ames Research Center, Flight Systems Implementation Branch, Moffett Field, CA 94035, USA.
| | | | - Andrew Pohorille
- University of California San Francisco, Department of Pharmaceutical Chemistry, San Francisco, CA 94158, USA; NASA Ames Research Center, Exobiology Branch, MS239-4, Moffett Field, CA 94035, USA.
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