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For: Sarai C, Tanifuji G, Nakayama T, Kamikawa R, Takahashi K, Yazaki E, Matsuo E, Miyashita H, Ishida KI, Iwataki M, Inagaki Y. Dinoflagellates with relic endosymbiont nuclei as models for elucidating organellogenesis. Proc Natl Acad Sci U S A 2020;117:5364-75. [PMID: 32094181 DOI: 10.1073/pnas.1911884117] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]  Open
Number Cited by Other Article(s)
1
Cooney EC, Jacobson DM, Wolfe GV, Bright KJ, Saldarriaga JF, Keeling PJ, Leander BS, Strom SL. Morphology, behavior, and phylogenomics of Oxytoxum lohmannii, Dinoflagellata. J Eukaryot Microbiol 2024:e13050. [PMID: 39019843 DOI: 10.1111/jeu.13050] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Revised: 07/03/2024] [Accepted: 07/03/2024] [Indexed: 07/19/2024]
2
Cooney EC, Holt CC, Hehenberger E, Adams JA, Leander BS, Keeling PJ. Investigation of heterotrophs reveals new insights in dinoflagellate evolution. Mol Phylogenet Evol 2024;196:108086. [PMID: 38677354 DOI: 10.1016/j.ympev.2024.108086] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2023] [Revised: 04/12/2024] [Accepted: 04/24/2024] [Indexed: 04/29/2024]
3
Novák Vanclová AM, Nef C, Füssy Z, Vancl A, Liu F, Bowler C, Dorrell RG. New plastids, old proteins: repeated endosymbiotic acquisitions in kareniacean dinoflagellates. EMBO Rep 2024;25:1859-1885. [PMID: 38499810 PMCID: PMC11014865 DOI: 10.1038/s44319-024-00103-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Revised: 01/19/2024] [Accepted: 02/06/2024] [Indexed: 03/20/2024]  Open
4
Harada R, Hirakawa Y, Yabuki A, Kim E, Yazaki E, Kamikawa R, Nakano K, Eliáš M, Inagaki Y. Encyclopedia of Family A DNA Polymerases Localized in Organelles: Evolutionary Contribution of Bacteria Including the Proto-Mitochondrion. Mol Biol Evol 2024;41:msae014. [PMID: 38271287 PMCID: PMC10877234 DOI: 10.1093/molbev/msae014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Revised: 01/12/2024] [Accepted: 01/19/2024] [Indexed: 01/27/2024]  Open
5
Füssy Z, Oborník M. Complex Endosymbioses I: From Primary to Complex Plastids, Serial Endosymbiotic Events. Methods Mol Biol 2024;2776:21-41. [PMID: 38502496 DOI: 10.1007/978-1-0716-3726-5_2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/21/2024]
6
Miyagishima SY. Taming the perils of photosynthesis by eukaryotes: constraints on endosymbiotic evolution in aquatic ecosystems. Commun Biol 2023;6:1150. [PMID: 37952050 PMCID: PMC10640588 DOI: 10.1038/s42003-023-05544-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2023] [Accepted: 11/03/2023] [Indexed: 11/14/2023]  Open
7
Holt CC, Hehenberger E, Tikhonenkov DV, Jacko-Reynolds VKL, Okamoto N, Cooney EC, Irwin NAT, Keeling PJ. Multiple parallel origins of parasitic Marine Alveolates. Nat Commun 2023;14:7049. [PMID: 37923716 PMCID: PMC10624901 DOI: 10.1038/s41467-023-42807-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Accepted: 10/20/2023] [Indexed: 11/06/2023]  Open
8
Park E, Cooney E, Heng Phua Y, Horiguchi T, Husnik F, Keeling P, Wakeman K, Leander B. Phylogenomics shows that novel tapeworm-like traits of haplozoan parasites evolved from within the Peridiniales (Dinoflagellata). Mol Phylogenet Evol 2023:107859. [PMID: 37329929 DOI: 10.1016/j.ympev.2023.107859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Revised: 06/08/2023] [Accepted: 06/10/2023] [Indexed: 06/19/2023]
9
Cooney EC, Leander BS, Keeling PJ. Phylogenomics shows unique traits in Noctilucales are derived rather than ancestral. PNAS NEXUS 2022;1:pgac202. [PMID: 36714854 PMCID: PMC9802342 DOI: 10.1093/pnasnexus/pgac202] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/12/2022] [Accepted: 09/19/2022] [Indexed: 02/01/2023]
10
Chen Y, Shah S, Dougan KE, van Oppen MJH, Bhattacharya D, Chan CX. Improved Cladocopium goreaui Genome Assembly Reveals Features of a Facultative Coral Symbiont and the Complex Evolutionary History of Dinoflagellate Genes. Microorganisms 2022;10:microorganisms10081662. [PMID: 36014080 PMCID: PMC9412976 DOI: 10.3390/microorganisms10081662] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2022] [Revised: 08/10/2022] [Accepted: 08/15/2022] [Indexed: 11/16/2022]  Open
11
Matsuo E, Morita K, Nakayama T, Yazaki E, Sarai C, Takahashi K, Iwataki M, Inagaki Y. Comparative Plastid Genomics of Green-Colored Dinoflagellates Unveils Parallel Genome Compaction and RNA Editing. FRONTIERS IN PLANT SCIENCE 2022;13:918543. [PMID: 35898209 PMCID: PMC9309888 DOI: 10.3389/fpls.2022.918543] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Accepted: 06/22/2022] [Indexed: 06/15/2023]
12
Judd M, Place AR. A Strategy for Gene Knockdown in Dinoflagellates. Microorganisms 2022;10:microorganisms10061131. [PMID: 35744649 PMCID: PMC9228228 DOI: 10.3390/microorganisms10061131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2022] [Revised: 05/26/2022] [Accepted: 05/27/2022] [Indexed: 02/01/2023]  Open
13
Marinov GK, Chen X, Wu T, He C, Grossman AR, Kundaje A, Greenleaf WJ. The chromatin organization of a chlorarachniophyte nucleomorph genome. Genome Biol 2022;23:65. [PMID: 35232465 PMCID: PMC8887012 DOI: 10.1186/s13059-022-02639-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Accepted: 02/17/2022] [Indexed: 12/29/2022]  Open
14
Uthanumallian K, Iha C, Repetti SI, Chan CX, Bhattacharya D, Duchene S, Verbruggen H. Tightly Constrained Genome Reduction and Relaxation of Purifying Selection during Secondary Plastid Endosymbiosis. Mol Biol Evol 2022;39:msab295. [PMID: 34613411 PMCID: PMC8763093 DOI: 10.1093/molbev/msab295] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]  Open
15
Yoshinaga M, Inagaki Y. Ubiquity and Origins of Structural Maintenance of Chromosomes (SMC) Proteins in Eukaryotes. Genome Biol Evol 2021;13:evab256. [PMID: 34894224 PMCID: PMC8665677 DOI: 10.1093/gbe/evab256] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/14/2021] [Indexed: 12/03/2022]  Open
16
Single cell genomics reveals plastid-lacking Picozoa are close relatives of red algae. Nat Commun 2021;12:6651. [PMID: 34789758 PMCID: PMC8599508 DOI: 10.1038/s41467-021-26918-0] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2021] [Accepted: 10/29/2021] [Indexed: 12/27/2022]  Open
17
Sibbald SJ, Archibald JM. Genomic Insights into Plastid Evolution. Genome Biol Evol 2021;12:978-990. [PMID: 32402068 PMCID: PMC7348690 DOI: 10.1093/gbe/evaa096] [Citation(s) in RCA: 46] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/07/2020] [Indexed: 01/16/2023]  Open
18
Signs of the plastid: Enzymes involved in plastid-localized metabolic pathways in a eugregarine species. Parasitol Int 2021;83:102364. [PMID: 33915268 DOI: 10.1016/j.parint.2021.102364] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2020] [Revised: 03/02/2021] [Accepted: 04/07/2021] [Indexed: 11/21/2022]
19
Baluška F, Miller WB, Reber AS. Biomolecular Basis of Cellular Consciousness via Subcellular Nanobrains. Int J Mol Sci 2021;22:ijms22052545. [PMID: 33802617 PMCID: PMC7961929 DOI: 10.3390/ijms22052545] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2021] [Revised: 02/24/2021] [Accepted: 02/25/2021] [Indexed: 02/07/2023]  Open
20
Koreny L, Zeeshan M, Barylyuk K, Tromer EC, van Hooff JJE, Brady D, Ke H, Chelaghma S, Ferguson DJP, Eme L, Tewari R, Waller RF. Molecular characterization of the conoid complex in Toxoplasma reveals its conservation in all apicomplexans, including Plasmodium species. PLoS Biol 2021;19:e3001081. [PMID: 33705380 PMCID: PMC7951837 DOI: 10.1371/journal.pbio.3001081] [Citation(s) in RCA: 39] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2020] [Accepted: 12/17/2020] [Indexed: 12/14/2022]  Open
21
Nakayama T, Takahashi K, Kamikawa R, Iwataki M, Inagaki Y, Tanifuji G. Putative genome features of relic green alga-derived nuclei in dinoflagellates and future perspectives as model organisms. Commun Integr Biol 2020;13:84-88. [PMID: 33014260 PMCID: PMC7518460 DOI: 10.1080/19420889.2020.1776568] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
22
Dinoflagellates with relic endosymbiont nuclei as models for elucidating organellogenesis. Proc Natl Acad Sci U S A 2020;117:5364-5375. [PMID: 32094181 DOI: 10.1073/pnas.1911884117] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]  Open
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