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Gentili PL, Stano P. Living cells and biological mechanisms as prototypes for developing chemical artificial intelligence. Biochem Biophys Res Commun 2024; 720:150060. [PMID: 38754164 DOI: 10.1016/j.bbrc.2024.150060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2023] [Revised: 03/25/2024] [Accepted: 05/06/2024] [Indexed: 05/18/2024]
Abstract
Artificial Intelligence (AI) is having a revolutionary impact on our societies. It is helping humans in facing the global challenges of this century. Traditionally, AI is developed in software or through neuromorphic engineering in hardware. More recently, a brand-new strategy has been proposed. It is the so-called Chemical AI (CAI), which exploits molecular, supramolecular, and systems chemistry in wetware to mimic human intelligence. In this work, two promising approaches for boosting CAI are described. One regards designing and implementing neural surrogates that can communicate through optical or chemical signals and give rise to networks for computational purposes and to develop micro/nanorobotics. The other approach concerns "bottom-up synthetic cells" that can be exploited for applications in various scenarios, including future nano-medicine. Both topics are presented at a basic level, mainly to inform the broader audience of non-specialists, and so favour the rise of interest in these frontier subjects.
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Affiliation(s)
- Pier Luigi Gentili
- Department of Chemistry, Biology, and Biotechnology, Università degli Studi di Perugia, Perugia, Italy.
| | - Pasquale Stano
- Department of Biological and Environmental Sciences and Technologies (DiSTeBA), University of Salento, Lecce, Italy.
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2
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Karashchuk L, Li JS(L, Chou GM, Walling-Bell S, Brunton SL, Tuthill JC, Brunton BW. Sensorimotor delays constrain robust locomotion in a 3D kinematic model of fly walking. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.04.18.589965. [PMID: 38712226 PMCID: PMC11071299 DOI: 10.1101/2024.04.18.589965] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2024]
Abstract
Walking animals must maintain stability in the presence of external perturbations, despite significant temporal delays in neural signaling and muscle actuation. Here, we develop a 3D kinematic model with a layered control architecture to investigate how sensorimotor delays constrain robustness of walking behavior in the fruit fly, Drosophila. Motivated by the anatomical architecture of insect locomotor control circuits, our model consists of three component layers: a neural network that generates realistic 3D joint kinematics for each leg, an optimal controller that executes the joint kinematics while accounting for delays, and an inter-leg coordinator. The model generates realistic simulated walking that matches real fly walking kinematics and sustains walking even when subjected to unexpected perturbations, generalizing beyond its training data. However, we found that the model's robustness to perturbations deteriorates when sensorimotor delay parameters exceed the physiological range. These results suggest that fly sensorimotor control circuits operate close to the temporal limit at which they can detect and respond to external perturbations. More broadly, we show how a modular, layered model architecture can be used to investigate physiological constraints on animal behavior.
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Affiliation(s)
- Lili Karashchuk
- Neuroscience Graduate Program, University of Washington, Seattle
| | - Jing Shuang (Lisa) Li
- Dept of Electrical Engineering and Computer Science, University of Michigan, Ann Arbor
| | - Grant M. Chou
- Dept of Physiology & Biophysics, University of Washington, Seattle
| | | | | | - John C. Tuthill
- Dept of Physiology & Biophysics, University of Washington, Seattle
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Greene P, Bastian AJ, Schieber MH, Sarma SV. Optimal reaching subject to computational and physical constraints reveals structure of the sensorimotor control system. Proc Natl Acad Sci U S A 2024; 121:e2319313121. [PMID: 38551834 PMCID: PMC10998569 DOI: 10.1073/pnas.2319313121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2023] [Accepted: 02/13/2024] [Indexed: 04/02/2024] Open
Abstract
Optimal feedback control provides an abstract framework describing the architecture of the sensorimotor system without prescribing implementation details such as what coordinate system to use, how feedback is incorporated, or how to accommodate changing task complexity. We investigate how such details are determined by computational and physical constraints by creating a model of the upper limb sensorimotor system in which all connection weights between neurons, feedback, and muscles are unknown. By optimizing these parameters with respect to an objective function, we find that the model exhibits a preference for an intrinsic (joint angle) coordinate representation of inputs and feedback and learns to calculate a weighted feedforward and feedback error. We further show that complex reaches around obstacles can be achieved by augmenting our model with a path-planner based on via points. The path-planner revealed "avoidance" neurons that encode directions to reach around obstacles and "placement" neurons that make fine-tuned adjustments to via point placement. Our results demonstrate the surprising capability of computationally constrained systems and highlight interesting characteristics of the sensorimotor system.
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Affiliation(s)
- Patrick Greene
- Institute for Computational Medicine, The Johns Hopkins University, Baltimore, MD21218
| | - Amy J. Bastian
- Kennedy Krieger Institute, Department of Neurology, The Johns Hopkins University School of Medicine, Baltimore, MD21205
| | - Marc H. Schieber
- Department of Neurology, University of Rochester, Rochester, NY14642
| | - Sridevi V. Sarma
- Institute for Computational Medicine, The Johns Hopkins University, Baltimore, MD21218
- Department of Biomedical Engineering, The Johns Hopkins University School of Medicine & Whiting School of Engineering, Baltimore, MD21218
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Li JS, Sarma AA, Sejnowski TJ, Doyle JC. Internal feedback in the cortical perception-action loop enables fast and accurate behavior. Proc Natl Acad Sci U S A 2023; 120:e2300445120. [PMID: 37738297 PMCID: PMC10523540 DOI: 10.1073/pnas.2300445120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2023] [Accepted: 07/18/2023] [Indexed: 09/24/2023] Open
Abstract
Animals move smoothly and reliably in unpredictable environments. Models of sensorimotor control, drawing on control theory, have assumed that sensory information from the environment leads to actions, which then act back on the environment, creating a single, unidirectional perception-action loop. However, the sensorimotor loop contains internal delays in sensory and motor pathways, which can lead to unstable control. We show here that these delays can be compensated by internal feedback signals that flow backward, from motor toward sensory areas. This internal feedback is ubiquitous in neural sensorimotor systems, and we show how internal feedback compensates internal delays. This is accomplished by filtering out self-generated and other predictable changes so that unpredicted, actionable information can be rapidly transmitted toward action by the fastest components, effectively compressing the sensory input to more efficiently use feedforward pathways: Tracts of fast, giant neurons necessarily convey less accurate signals than tracts with many smaller neurons, but they are crucial for fast and accurate behavior. We use a mathematically tractable control model to show that internal feedback has an indispensable role in achieving state estimation, localization of function (how different parts of the cortex control different parts of the body), and attention, all of which are crucial for effective sensorimotor control. This control model can explain anatomical, physiological, and behavioral observations, including motor signals in the visual cortex, heterogeneous kinetics of sensory receptors, and the presence of giant cells in the cortex of humans as well as internal feedback patterns and unexplained heterogeneity in neural systems.
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Affiliation(s)
- Jing Shuang Li
- Control and Dynamical Systems, Division of Engineering and Applied Science, California Institute of Technology, Pasadena, CA91125
| | - Anish A. Sarma
- Control and Dynamical Systems, Division of Engineering and Applied Science, California Institute of Technology, Pasadena, CA91125
- School of Medicine, Vanderbilt University, Nashville, TN37232
| | - Terrence J. Sejnowski
- Department of Neurobiology, Computational Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA92037
- Department of Neurobiology, Division of Biological Sciences, University of California San Diego, La Jolla, CA92093
| | - John C. Doyle
- Control and Dynamical Systems, Division of Engineering and Applied Science, California Institute of Technology, Pasadena, CA91125
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Ijspeert AJ, Daley MA. Integration of feedforward and feedback control in the neuromechanics of vertebrate locomotion: a review of experimental, simulation and robotic studies. J Exp Biol 2023; 226:jeb245784. [PMID: 37565347 DOI: 10.1242/jeb.245784] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/12/2023]
Abstract
Animal locomotion is the result of complex and multi-layered interactions between the nervous system, the musculo-skeletal system and the environment. Decoding the underlying mechanisms requires an integrative approach. Comparative experimental biology has allowed researchers to study the underlying components and some of their interactions across diverse animals. These studies have shown that locomotor neural circuits are distributed in the spinal cord, the midbrain and higher brain regions in vertebrates. The spinal cord plays a key role in locomotor control because it contains central pattern generators (CPGs) - systems of coupled neuronal oscillators that provide coordinated rhythmic control of muscle activation that can be viewed as feedforward controllers - and multiple reflex loops that provide feedback mechanisms. These circuits are activated and modulated by descending pathways from the brain. The relative contributions of CPGs, feedback loops and descending modulation, and how these vary between species and locomotor conditions, remain poorly understood. Robots and neuromechanical simulations can complement experimental approaches by testing specific hypotheses and performing what-if scenarios. This Review will give an overview of key knowledge gained from comparative vertebrate experiments, and insights obtained from neuromechanical simulations and robotic approaches. We suggest that the roles of CPGs, feedback loops and descending modulation vary among animals depending on body size, intrinsic mechanical stability, time required to reach locomotor maturity and speed effects. We also hypothesize that distal joints rely more on feedback control compared with proximal joints. Finally, we highlight important opportunities to address fundamental biological questions through continued collaboration between experimentalists and engineers.
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Affiliation(s)
- Auke J Ijspeert
- BioRobotics Laboratory, EPFL - Ecole Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
| | - Monica A Daley
- Department of Ecology and Evolutionary Biology, University of California, Irvine, Irvine, CA 92697, USA
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Howard MW, Esfahani ZG, Le B, Sederberg PB. Foundations of a temporal RL. ARXIV 2023:arXiv:2302.10163v1. [PMID: 36866224 PMCID: PMC9980275] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Subscribe] [Scholar Register] [Indexed: 03/04/2023]
Abstract
Recent advances in neuroscience and psychology show that the brain has access to timelines of both the past and the future. Spiking across populations of neurons in many regions of the mammalian brain maintains a robust temporal memory, a neural timeline of the recent past. Behavioral results demonstrate that people can estimate an extended temporal model of the future, suggesting that the neural timeline of the past could extend through the present into the future. This paper presents a mathematical framework for learning and expressing relationships between events in continuous time. We assume that the brain has access to a temporal memory in the form of the real Laplace transform of the recent past. Hebbian associations with a diversity of synaptic time scales are formed between the past and the present that record the temporal relationships between events. Knowing the temporal relationships between the past and the present allows one to predict relationships between the present and the future, thus constructing an extended temporal prediction for the future. Both memory for the past and the predicted future are represented as the real Laplace transform, expressed as the firing rate over populations of neurons indexed by different rate constants s. The diversity of synaptic timescales allows for a temporal record over the much larger time scale of trial history. In this framework, temporal credit assignment can be assessed via a Laplace temporal difference. The Laplace temporal difference compares the future that actually follows a stimulus to the future predicted just before the stimulus was observed. This computational framework makes a number of specific neurophysiological predictions and, taken together, could provide the basis for a future iteration of RL that incorporates temporal memory as a fundamental building block.
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Sejnowski TJ. Large Language Models and the Reverse Turing Test. Neural Comput 2023; 35:309-342. [PMID: 36746144 PMCID: PMC10177005 DOI: 10.1162/neco_a_01563] [Citation(s) in RCA: 18] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2022] [Accepted: 08/21/2022] [Indexed: 02/08/2023]
Abstract
Large language models (LLMs) have been transformative. They are pretrained foundational models that are self-supervised and can be adapted with fine-tuning to a wide range of natural language tasks, each of which previously would have required a separate network model. This is one step closer to the extraordinary versatility of human language. GPT-3 and, more recently, LaMDA, both of them LLMs, can carry on dialogs with humans on many topics after minimal priming with a few examples. However, there has been a wide range of reactions and debate on whether these LLMs understand what they are saying or exhibit signs of intelligence. This high variance is exhibited in three interviews with LLMs reaching wildly different conclusions. A new possibility was uncovered that could explain this divergence. What appears to be intelligence in LLMs may in fact be a mirror that reflects the intelligence of the interviewer, a remarkable twist that could be considered a reverse Turing test. If so, then by studying interviews, we may be learning more about the intelligence and beliefs of the interviewer than the intelligence of the LLMs. As LLMs become more capable, they may transform the way we interact with machines and how they interact with each other. Increasingly, LLMs are being coupled with sensorimotor devices. LLMs can talk the talk, but can they walk the walk? A road map for achieving artificial general autonomy is outlined with seven major improvements inspired by brain systems and how LLMs could in turn be used to uncover new insights into brain function.
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Affiliation(s)
- Terrence J Sejnowski
- Salk Institute for Biological Studies, La Jolla, CA 92093, U.S.A.,Division of Biological Sciences, University of California, San Diego, La Jolla, CA 92037, U.S.A.
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Layered feedback control overcomes performance trade-off in synthetic biomolecular networks. Nat Commun 2022; 13:5393. [PMID: 36104365 PMCID: PMC9474519 DOI: 10.1038/s41467-022-33058-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Accepted: 08/31/2022] [Indexed: 11/08/2022] Open
Abstract
AbstractLayered feedback is an optimization strategy in feedback control designs widely used in engineering. Control theory suggests that layering multiple feedbacks could overcome the robustness-speed performance trade-off limit. In natural biological networks, genes are often regulated in layers to adapt to environmental perturbations. It is hypothesized layering architecture could also overcome the robustness-speed performance trade-off in genetic networks. In this work, we validate this hypothesis with a synthetic biomolecular network in living E. coli cells. We start with system dynamics analysis using models of various complexities to guide the design of a layered control architecture in living cells. Experimentally, we interrogate system dynamics under three groups of perturbations. We consistently observe that the layered control improves system performance in the robustness-speed domain. This work confirms that layered control could be adopted in synthetic biomolecular networks for performance optimization. It also provides insights into understanding genetic feedback control architectures in nature.
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White AJ. Sensory feedback expands dynamic complexity and aids in robustness against noise. BIOLOGICAL CYBERNETICS 2022; 116:267-269. [PMID: 34982224 DOI: 10.1007/s00422-021-00917-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2021] [Accepted: 12/14/2021] [Indexed: 06/14/2023]
Abstract
It has been hypothesized that sensory feedback is a critical component in determining the functionality of a central pattern generator. To test this, Yu and Thomas's recent work Yu and Thomas (Biol Cybern 115(2):135-160, 2021) built a model of a half-center oscillator coupled to a simple muscular model with sensory feedback. They showed that sensory feedback increases robustness against external noise, while simultaneously expanding the potential repertoire of functions the half-center oscillator can perform. However, they show that this comes at the cost of robustness against internal noise.
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Affiliation(s)
- Alexander J White
- Institute of Systems Neuroscience, National Tsing Hua University, Hsinchu, Taiwan.
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