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Dal Corso J, Newton RJ, Zerkle AL, Chu D, Song H, Song H, Tian L, Tong J, Di Rocco T, Claire MW, Mather TA, He T, Gallagher T, Shu W, Wu Y, Bottrell SH, Metcalfe I, Cope HA, Novak M, Jamieson RA, Wignall PB. Repeated pulses of volcanism drove the end-Permian terrestrial crisis in northwest China. Nat Commun 2024; 15:7628. [PMID: 39223125 PMCID: PMC11368959 DOI: 10.1038/s41467-024-51671-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2023] [Accepted: 08/12/2024] [Indexed: 09/04/2024] Open
Abstract
The Permo-Triassic mass extinction was linked to catastrophic environmental changes and large igneous province (LIP) volcanism. In addition to the widespread marine losses, the Permo-Triassic event was the most severe terrestrial ecological crisis in Earth's history and the only known mass extinction among insects, but the cause of extinction on land remains unclear. In this study, high-resolution Hg concentration records and multiple-archive S-isotope analyses of sediments from the Junggar Basin (China) provide evidence of repeated pulses of volcanic-S (acid rain) and increased Hg loading culminating in a crisis of terrestrial biota in the Junggar Basin coeval with the interval of LIP emplacement. Minor S-isotope analyses are, however, inconsistent with total ozone layer collapse. Our data suggest that LIP volcanism repeatedly stressed end-Permian terrestrial environments in the ~300 kyr preceding the marine extinction locally via S-driven acidification and deposition of Hg, and globally via pulsed addition of CO2.
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Affiliation(s)
- Jacopo Dal Corso
- School of Earth and Environment, University of Leeds, Leeds, UK.
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences Wuhan, Wuhan, China.
| | - Robert J Newton
- School of Earth and Environment, University of Leeds, Leeds, UK.
| | - Aubrey L Zerkle
- School of Earth and Environmental Sciences and Centre for Exoplanet Science, University of St Andrews, St Andrews, UK
- Blue Marble Space Institute of Science, Seattle, WA, USA
| | - Daoliang Chu
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences Wuhan, Wuhan, China
| | - Haijun Song
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences Wuhan, Wuhan, China
| | - Huyue Song
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences Wuhan, Wuhan, China
| | - Li Tian
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences Wuhan, Wuhan, China
| | - Jinnan Tong
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences Wuhan, Wuhan, China
| | - Tommaso Di Rocco
- School of Earth and Environmental Sciences and Centre for Exoplanet Science, University of St Andrews, St Andrews, UK
- Geochemistry and Isotope Geology Department, Geosciences Center, University of Göttingen, Göttingen, Germany
| | - Mark W Claire
- School of Earth and Environmental Sciences and Centre for Exoplanet Science, University of St Andrews, St Andrews, UK
- Blue Marble Space Institute of Science, Seattle, WA, USA
| | - Tamsin A Mather
- Department of Earth Sciences, University of Oxford, Oxford, UK
| | - Tianchen He
- School of Earth and Environment, University of Leeds, Leeds, UK
- College of Oceanography, Hohai University, Nanjing, China
| | | | - Wenchao Shu
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences Wuhan, Wuhan, China
| | - Yuyang Wu
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences Wuhan, Wuhan, China
| | | | - Ian Metcalfe
- Division of Earth Science, School of Environmental and Rural Science, University of New England, Armidale, New South Wales, Australia
| | - Helen A Cope
- School of Earth and Environment, University of Leeds, Leeds, UK
| | - Martin Novak
- Department of Environmental Geochemistry and Biogeochemistry, Czech Geological Survey, Prague, Czech Republic
| | | | - Paul B Wignall
- School of Earth and Environment, University of Leeds, Leeds, UK
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Zhao C, Guo Q, Zhang T, Han X, Usman D. Procedures from samples to sulfur isotopic data: A review. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2024; 38:e9733. [PMID: 38591181 DOI: 10.1002/rcm.9733] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Revised: 01/31/2024] [Accepted: 02/18/2024] [Indexed: 04/10/2024]
Abstract
RATIONALE Sulfur isotopes have been widely used to solve some key scientific questions, especially in the last two decades with advanced instruments and analytical schemes. Different sulfur speciation and multiple isotopes analyzed in laboratories worldwide and in situ microanalysis have also been reported in many articles. However, methods of sampling to measurements are multifarious, and occasionally some inaccuracies are present in published papers. Vague methods may mislead newcomers to the field, puzzle readers, or lead to incorrect data-based correlations. METHODS We have reviewed multiple methods on sulfur isotopic analyses from the perspectives of sampling, laboratory work, and instrumental analysis in order to help reduce operational inhomogeneity and ensure the fidelity of sulfur isotopic data. We do not deem our proposed solutions as the ultimate standard methods but as a lead-in to the overall introduction and summary of the current methods used. RESULTS It has been shown that external contamination and transformation of different sulfur species should be avoided during the sampling, pretreatment, storage, and chemical treatment processes. Conversion rates and sulfur isotopic fractionations during sulfur extraction, purification, and conversion processes must be verified by researchers using standard or known samples. The unification of absence of isotopic fractionation is needed during all steps, and long-term monitoring of standard samples is recommended. CONCLUSION This review compiles more details on different methods in sampling, laboratory operation, and measurement of sulfur isotopes, which is beneficial for researchers' better practice in laboratories. Microanalyses and molecular studies are the frontier techniques that compare the bulk sample with the elemental analysis/continuous flow-gas source stable isotope ratio mass spectrometry method, but the latter is widely used. The development of sulfur isotopic measurements will lead to the innovation in scientific issues with sulfur proxies.
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Affiliation(s)
- Changqiu Zhao
- Center for Environmental Remediation, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Qingjun Guo
- Center for Environmental Remediation, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
| | - Tonggang Zhang
- College of Geosciences, China University of Petroleum, Beijing, China
| | - Xiaokun Han
- Institute of Surface-Earth System Science, School of Earth System Science, Tianjin University, Tianjin, China
| | - Dawuda Usman
- Center for Environmental Remediation, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, China
- University of Chinese Academy of Sciences, Beijing, China
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Guo L, Wang S, Jiao X, Ye X, Deng D, Liu H, Li Y, Van de Peer Y, Wu W. Convergent and/or parallel evolution of RNA-binding proteins in angiosperms after polyploidization. THE NEW PHYTOLOGIST 2024; 242:1377-1393. [PMID: 38436132 DOI: 10.1111/nph.19656] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2023] [Accepted: 02/20/2024] [Indexed: 03/05/2024]
Abstract
Increasing studies suggest that the biased retention of stress-related transcription factors (TFs) after whole-genome duplications (WGDs) could rewire gene transcriptional networks, facilitating plant adaptation to challenging environments. However, the role of posttranscriptional factors (e.g. RNA-binding proteins, RBPs) following WGDs has been largely ignored. Uncovering thousands of RBPs in 21 representative angiosperm species, we integrate genomic, transcriptomic, regulatomic, and paleotemperature datasets to unravel their evolutionary trajectories and roles in adapting to challenging environments. We reveal functional enrichments of RBP genes in stress responses and identify their convergent retention across diverse angiosperms from independent WGDs, coinciding with global cooling periods. Numerous RBP duplicates derived from WGDs are then identified as cold-induced. A significant overlap of 29 orthogroups between WGD-derived and cold-induced RBP genes across diverse angiosperms highlights a correlation between WGD and cold stress. Notably, we unveil an orthogroup (Glycine-rich RNA-binding Proteins 7/8, GRP7/8) and relevant TF duplicates (CCA1/LHY, RVE4/8, CBF2/4, etc.), co-retained in different angiosperms post-WGDs. Finally, we illustrate their roles in rewiring circadian and cold-regulatory networks at both transcriptional and posttranscriptional levels during global cooling. Altogether, we underline the adaptive evolution of RBPs in angiosperms after WGDs during global cooling, improving our understanding of plants surviving periods of environmental turmoil.
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Affiliation(s)
- Liangyu Guo
- State Key Laboratory of Subtropical Silviculture, School of Forestry and Biotechnology, Zhejiang A&F University, Lin'an, Hangzhou, 311300, China
| | - Shuo Wang
- State Key Laboratory of Subtropical Silviculture, School of Forestry and Biotechnology, Zhejiang A&F University, Lin'an, Hangzhou, 311300, China
| | - Xi Jiao
- State Key Laboratory of Subtropical Silviculture, School of Forestry and Biotechnology, Zhejiang A&F University, Lin'an, Hangzhou, 311300, China
| | - Xiaoxue Ye
- Institute of Tropical Biosciences and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101, China
| | - Deyin Deng
- State Key Laboratory of Subtropical Silviculture, School of Forestry and Biotechnology, Zhejiang A&F University, Lin'an, Hangzhou, 311300, China
| | - Hua Liu
- State Key Laboratory of Subtropical Silviculture, School of Forestry and Biotechnology, Zhejiang A&F University, Lin'an, Hangzhou, 311300, China
| | - Yan Li
- State Key Laboratory of Subtropical Silviculture, School of Forestry and Biotechnology, Zhejiang A&F University, Lin'an, Hangzhou, 311300, China
| | - Yves Van de Peer
- Department of Plant Biotechnology and Bioinformatics, VIB - UGent Center for Plant Systems Biology, Ghent University, B-9052, Ghent, Belgium
- College of Horticulture, Academy for Advanced Interdisciplinary Studies, Nanjing Agricultural University, Nanjing, 210095, China
- Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, 0028, South Africa
| | - Wenwu Wu
- State Key Laboratory of Subtropical Silviculture, School of Forestry and Biotechnology, Zhejiang A&F University, Lin'an, Hangzhou, 311300, China
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